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ONTOLOGY REPORT - ANNOTATIONS


Term:basement membrane organization
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Accession:GO:0071711 term browser browse the term
Definition:A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the basement membrane.
Comment:Note that this term has no relationship to 'membrane organization ; GO:0061024' because the basement membrane is not a lipid bilayer.
Synonyms:exact_synonym: basement membrane organisation


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basement membrane organization term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CAV1 caveolin 1 IEA Ensembl GO_REF:0000107 NCBI chr18:29,648,120...29,682,451
Ensembl chr18:29,649,992...29,682,465
JBrowse link
G CAV2 caveolin 2 IEA Ensembl GO_REF:0000107 NCBI chr18:29,699,012...29,707,277
Ensembl chr18:29,699,020...29,707,277
JBrowse link
G COL4A1 collagen type IV alpha 1 chain ISO (PMID:18160688), (PMID:19949034), (PMID:23065703) BHF-UCL PMID:18160688, PMID:19949034, PMID:23065703 NCBI chr11:76,858,332...76,997,409 JBrowse link
G DAG1 dystroglycan 1 IEA Ensembl GO_REF:0000107 NCBI chr13:32,028,019...32,092,450
Ensembl chr13:32,029,329...32,092,453
JBrowse link
G EXT1 exostosin glycosyltransferase 1 IEA Ensembl GO_REF:0000107 NCBI chr 4:20,645,002...20,935,769
Ensembl chr 4:20,645,809...20,935,564
JBrowse link
G FERMT1 fermitin family member 1 IEA Ensembl GO_REF:0000107 NCBI chr17:15,080,585...15,137,947
Ensembl chr17:15,080,587...15,137,753
JBrowse link
G FLRT2 fibronectin leucine rich transmembrane protein 2 IEA Ensembl GO_REF:0000107 NCBI chr 7:107,812,354...107,913,006
Ensembl chr 7:107,812,613...107,913,618
JBrowse link
G FSHR follicle stimulating hormone receptor IEA Ensembl GO_REF:0000107 NCBI chr 3:91,607,236...91,775,255
Ensembl chr 3:91,607,305...91,774,683
JBrowse link
G GAS2 growth arrest specific 2 IEA Ensembl GO_REF:0000107 NCBI chr 2:36,712,758...36,885,436
Ensembl chr 2:36,711,609...36,885,620
JBrowse link
G ITGB1 integrin subunit beta 1 IEA Ensembl GO_REF:0000107 NCBI chr10:56,078,393...56,130,608
Ensembl chr10:56,078,398...56,173,795
JBrowse link
G MMP11 matrix metallopeptidase 11 IEA Ensembl GO_REF:0000107 NCBI chr14:49,907,684...49,917,494
Ensembl chr14:49,907,694...49,917,469
JBrowse link
G PMP22 peripheral myelin protein 22 ISO (MGI:MGI:3613258|PMID:16436605) MGI PMID:16436605 MGI:MGI:3613258 NCBI chr12:58,679,773...58,734,195
Ensembl chr12:58,679,776...58,707,953
JBrowse link
G RIC8A RIC8 guanine nucleotide exchange factor A IEA Ensembl GO_REF:0000107 NCBI chr 2:32,135...37,682
Ensembl chr 2:32,215...39,360
JBrowse link
G SPINT2 serine peptidase inhibitor, Kunitz type 2 IEA Ensembl GO_REF:0000107 NCBI chr 6:47,181,772...47,210,564
Ensembl chr 6:47,181,768...47,210,561
JBrowse link
G TFAP2A transcription factor AP-2 alpha ISO (MGI:MGI:3610667|PMID:16186342) MGI PMID:16186342 MGI:MGI:3610667 NCBI chr 7:7,221,654...7,244,626
Ensembl chr 7:7,221,656...7,244,477
JBrowse link
basement membrane assembly term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LAMB1 laminin subunit beta 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 9:107,670,120...107,747,242
Ensembl chr 9:107,671,152...107,772,269
JBrowse link
G LAMB2 laminin subunit beta 2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr13:31,738,282...31,750,623
Ensembl chr13:31,738,284...31,771,220
JBrowse link
G LAMB3 laminin subunit beta 3 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 9:133,298,009...133,351,162
Ensembl chr 9:133,311,834...133,351,197
JBrowse link
G NTN4 netrin 4 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 5:87,671,153...87,784,704
Ensembl chr 5:87,671,873...87,784,704
JBrowse link
G NTNG1 netrin G1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 4:112,280,899...112,615,782
Ensembl chr 4:112,287,043...112,614,544
JBrowse link
G PLOD3 procollagen-lysine,2-oxoglutarate 5-dioxygenase 3 IEA Ensembl GO_REF:0000107 NCBI chr 3:8,911,787...8,919,525
Ensembl chr 3:8,911,787...8,919,516
JBrowse link
G RAMP2 receptor activity modifying protein 2 ISS UniProt GO_REF:0000024 NCBI chr12:20,092,204...20,094,426
Ensembl chr12:20,092,193...20,094,474
JBrowse link
basement membrane disassembly term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CTSS cathepsin S IEA Ensembl GO_REF:0000107 NCBI chr 4:98,415,273...98,442,952
Ensembl chr 4:98,390,250...98,442,936
JBrowse link
G HPN hepsin IEA Ensembl GO_REF:0000107 NCBI chr 6:44,608,076...44,628,044
Ensembl chr 6:44,608,071...44,628,049
JBrowse link
positive regulation of basement membrane assembly involved in embryonic body morphogenesis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CLASP1 cytoplasmic linker associated protein 1 IEA Ensembl GO_REF:0000107 NCBI chr15:29,782,613...30,042,727
Ensembl chr15:29,782,604...30,042,734
JBrowse link
G CLASP2 cytoplasmic linker associated protein 2 IEA Ensembl GO_REF:0000107 NCBI chr13:19,305,430...19,510,589
Ensembl chr13:19,305,180...19,510,585
JBrowse link
G DAG1 dystroglycan 1 IEA Ensembl GO_REF:0000107 NCBI chr13:32,028,019...32,092,450
Ensembl chr13:32,029,329...32,092,453
JBrowse link
G PHLDB1 pleckstrin homology like domain family B member 1 IEA Ensembl GO_REF:0000107 NCBI chr 9:45,902,099...45,949,415
Ensembl chr 9:45,902,105...45,949,417
JBrowse link
G PHLDB2 pleckstrin homology like domain family B member 2 IEA Ensembl GO_REF:0000107 NCBI chr13:147,778,420...148,025,943
Ensembl chr13:147,778,053...148,087,744
JBrowse link
G PLCXD2 phosphatidylinositol specific phospholipase C X domain containing 2 IEA Ensembl GO_REF:0000107 NCBI chr13:148,033,712...148,087,766
Ensembl chr13:147,778,053...148,087,744
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 16545
    cellular process 15777
      cellular component organization or biogenesis 5990
        cellular component organization 5822
          extracellular structure organization 299
            extracellular matrix organization 297
              basement membrane organization 29
                basement membrane assembly + 13
                basement membrane disassembly + 2
                regulation of basement membrane organization + 6
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.