ONTOLOGY REPORT - ANNOTATIONS
Term: tumor necrosis factor superfamily cytokine production
Accession: GO:0071706
browse the term
Definition: The appearance of any member of the TNF superfamily due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels.
Comment: Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select one of the 'regulation' children terms.
Synonyms: exact_synonym: TNFSF cytokine production
related_synonym: TNF superfamily production
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Acp5
acid phosphatase 5, tartrate resistant
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:2180086 (PMID:11168643)
Ensembl RGD
PMID:11168643
GO_REF:0000107
NCBI chr 8:20,663,984...20,670,604
Ensembl chr 8:20,663,985...20,667,929
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Adipoq
adiponectin, C1Q and collagen domain containing
involved_in
ISO ISS
(PMID:10961870) GO_REF:0000024
RGD UniProt
PMID:10961870
GO_REF:0000024
NCBI chr11:77,721,912...77,735,644
Ensembl chr11:77,721,912...77,735,564
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Adrb2
adrenoceptor beta 2
ISO
RGD
PMID:11096136
RGD:8548521
NCBI chr18:55,642,459...55,644,501
Ensembl chr18:55,502,903...55,644,512
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Akap8
A-kinase anchoring protein 8
involved_in
ISO
(MGI:5763364|PMID:19531803)
RGD
PMID:19531803
MGI:5763364
NCBI chr 7:11,316,224...11,332,523
Ensembl chr 7:11,316,228...11,332,399
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Arg2
arginase 2
involved_in
IEA ISO
GO_REF:0000107 (MGI:5908771|PMID:27074721) (PMID:28614294)
Ensembl RGD
PMID:27074721 PMID:28614294
GO_REF:0000107 MGI:5908771
NCBI chr 6:97,936,002...97,961,379
Ensembl chr 6:97,936,002...97,961,378
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Arrb2
arrestin, beta 2
involved_in
ISO IEA
(MGI:3662828|PMID:16378096) GO_REF:0000107
RGD Ensembl
PMID:16378096
GO_REF:0000107 MGI:3662828
NCBI chr10:55,146,887...55,154,854
Ensembl chr10:55,146,818...55,154,850
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Axl
Axl receptor tyrosine kinase
acts_upstream_of_or_within
ISO
MGI:107670 (PMID:16831897)
RGD
PMID:16831897
NCBI chr 1:81,265,088...81,296,278
Ensembl chr 1:81,265,088...81,296,265
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Bcl3
BCL3, transcription coactivator
acts_upstream_of_or_within
ISO
(PMID:15465827)
RGD
PMID:15465827
NCBI chr 1:79,471,368...79,485,908
Ensembl chr 1:79,471,369...79,485,607
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Bpi
bactericidal/permeability-increasing protein
involved_in
ISO IBA IEA
(PMID:8409400) GO_REF:0000033 GO_REF:0000118
RGD GO_Central TreeGrafter
PMID:8409400
GO_REF:0000033 GO_REF:0000118
NCBI chr 3:146,909,626...146,936,487
Ensembl chr 3:146,909,629...146,936,221
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C5ar2
complement C5a receptor 2
involved_in
ISO ISS
(PMID:16204243) GO_REF:0000024
RGD UniProt
PMID:16204243
GO_REF:0000024
NCBI chr 1:76,930,381...76,945,432
Ensembl chr 1:76,930,383...76,959,517
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Cactin
cactin, spliceosome C complex subunit
involved_in
ISO
(PMID:20829348)
RGD
PMID:20829348
NCBI chr 7:8,391,396...8,397,219
Ensembl chr 7:8,391,397...8,396,829
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Cd24
CD24 molecule
involved_in
ISO
(MGI:5913663|PMID:19264983)
RGD
PMID:19264983
MGI:5913663
NCBI chr20:47,074,353...47,079,662
Ensembl chr20:47,073,512...47,079,662
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Cd33
CD33 molecule
involved_in
ISO
(PMID:15597323)
RGD
PMID:15597323
NCBI chr 1:93,935,418...93,940,452
Ensembl chr 1:93,930,971...93,950,149
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Chrna7
cholinergic receptor nicotinic alpha 7 subunit
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:1888407 (PMID:12508119), (PMID:16785311)
Ensembl RGD
PMID:12508119 PMID:16785311
GO_REF:0000107
NCBI chr 1:116,711,559...116,837,269
Ensembl chr 1:116,714,711...116,837,240
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Cidea
cell death-inducing DFFA-like effector a
involved_in
ISO
(PMID:15919794)
RGD
PMID:15919794
NCBI chr18:60,894,917...60,920,485
Ensembl chr18:60,894,874...60,920,481
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Clec4a
C-type lectin domain family 4, member A
involved_in
ISS
GO_REF:0000024
UniProt
GO_REF:0000024
NCBI chr 4:156,340,439...156,434,212
Ensembl chr 4:156,414,688...156,432,402
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Clec4a3
C-type lectin domain family 4, member A3
involved_in
ISO
(PMID:18258799)
RGD
PMID:18258799
NCBI chr 4:156,214,030...156,224,818
Ensembl chr 4:156,214,718...156,224,817
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Cx3cl1
C-X3-C motif chemokine ligand 1
involved_in
ISO
(PMID:10652441)
RGD
PMID:10652441
NCBI chr19:10,227,337...10,237,826
Ensembl chr19:10,227,340...10,236,833
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Dicer1
dicer 1 ribonuclease III
acts_upstream_of
ISO
(PMID:26435691)
RGD
PMID:26435691
NCBI chr 6:123,627,529...123,692,278
Ensembl chr 6:123,631,250...123,693,965
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Elf4
E74 like ETS transcription factor 4
involved_in
ISO
(PMID:35266071) (MGI:7341386|PMID:35266071)
RGD
PMID:35266071
MGI:7341386
NCBI chr X:127,587,401...127,639,063
Ensembl chr X:127,590,650...127,630,200
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Errfi1
ERBB receptor feedback inhibitor 1
IMP
RGD
PMID:19204184
RGD:9685562
NCBI chr 5:161,323,981...161,337,289
Ensembl chr 5:161,323,998...161,337,282
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Flt3
Fms related receptor tyrosine kinase 3
acts_upstream_of_or_within
ISO
MGI:3628823 (PMID:20457904)
RGD
PMID:20457904
NCBI chr12:7,623,930...7,699,474
Ensembl chr12:7,623,930...7,699,474
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Foxp3
forkhead box P3
acts_upstream_of_or_within
ISO
MGI:3696705 (PMID:16275384)
RGD
PMID:16275384
NCBI chr X:14,908,494...14,924,994
Ensembl chr X:14,908,494...14,923,838
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Fxr1
FMR1 autosomal homolog 1
involved_in
ISS IEA ISO
GO_REF:0000024 GO_REF:0000107 (MGI:3573966|PMID:15548538)
UniProt Ensembl RGD
PMID:15548538
GO_REF:0000024 GO_REF:0000107 MGI:3573966
NCBI chr 2:116,884,167...116,937,590
Ensembl chr 2:116,884,248...116,937,590
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Gas6
growth arrest specific 6
involved_in
ISO ISS
(PMID:19657094), (PMID:20103767) GO_REF:0000024
RGD UniProt
PMID:19657094 PMID:20103767
GO_REF:0000024
NCBI chr16:76,045,430...76,075,904
Ensembl chr16:76,045,426...76,075,904
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Ghrl
ghrelin and obestatin prepropeptide
involved_in
IDA ISS ISO
GO_REF:0000024 (PMID:15232612)
UniProt RGD
PMID:15232612 PMID:19620309
GO_REF:0000024, RGD:12905041
NCBI chr 4:146,865,712...146,869,621
Ensembl chr 4:146,865,712...146,869,621
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Ghsr
growth hormone secretagogue receptor
involved_in
IMP ISS ISO
GO_REF:0000024 (PMID:15232612)
UniProt RGD
PMID:15232612 PMID:17911350
GO_REF:0000024, RGD:12907501
NCBI chr 2:110,268,489...110,271,865
Ensembl chr 2:110,268,489...110,271,865
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Gpnmb
glycoprotein nmb
involved_in
ISO
(MGI:3836695|PMID:17475886)
RGD
PMID:17475886
MGI:3836695
NCBI chr 4:78,010,247...78,031,491
Ensembl chr 4:78,010,197...78,049,367
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Gpr18
G protein-coupled receptor 18
acts_upstream_of_or_within
ISO
MGI:5708707 (PMID:25348153)
RGD
PMID:25348153
NCBI chr15:98,997,427...99,001,177
Ensembl chr15:98,997,259...99,001,470
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Gstp1
glutathione S-transferase pi 1
involved_in
ISS ISO
GO_REF:0000024 (MGI:5009376|PMID:18962899), (MGI:5009411|PMID:16023107) (PMID:18962899)
BHF-UCL RGD
PMID:16023107 PMID:18962899
GO_REF:0000024 MGI:5009376 MGI:5009411
NCBI chr 1:201,337,762...201,340,230
Ensembl chr 1:201,321,672...201,340,226
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H19
H19 imprinted maternally expressed transcript
IMP
RGD
PMID:27796346
RGD:156430325
NCBI chr 1:197,730,698...197,733,374
Ensembl chr 1:197,730,698...197,733,134
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Havcr2
hepatitis A virus cellular receptor 2
involved_in
ISO
UniProtKB:O00182 (PMID:25578313)
RGD
PMID:25578313
NCBI chr10:30,882,484...30,914,018
Ensembl chr10:30,882,606...30,909,137
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Hdac3
histone deacetylase 3
IMP
RGD
PMID:22772764
RGD:9590127
NCBI chr18:29,770,637...29,789,850
Ensembl chr18:29,770,636...29,793,856
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Hsf1
heat shock transcription factor 1
acts_upstream_of_or_within
ISO
MGI:2155444 (PMID:10545106)
RGD
PMID:10545106
NCBI chr 7:108,196,040...108,223,011
Ensembl chr 7:108,196,056...108,223,011
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Igf1
insulin-like growth factor 1
involved_in
ISO IEA
RNAcentral:URS000034B6F5_9606 (PMID:27277332) GO_REF:0000107
RGD Ensembl
PMID:27277332
GO_REF:0000107
NCBI chr 7:22,282,895...22,361,972
Ensembl chr 7:22,282,930...22,359,296
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Il10
interleukin 10
acts_upstream_of_or_within
IDA ISO
MGI:1857199 (PMID:12452830)
RGD
PMID:12452830 PMID:17017555
RGD:1598631
NCBI chr13:42,472,625...42,477,308
Ensembl chr13:42,472,839...42,477,313
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Il27ra
interleukin 27 receptor subunit alpha
involved_in
ISO
UniProtKB:P35951 (MGI:5581894|PMID:22927332)
RGD
PMID:22927332
MGI:5581894
NCBI chr19:24,109,963...24,121,977
Ensembl chr19:24,109,972...24,121,938
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Il4
interleukin 4
involved_in
ISO
(MGI:6304699|PMID:29061364)
RGD
PMID:29061364
MGI:6304699
NCBI chr10:37,771,203...37,776,750
Ensembl chr10:37,771,203...37,776,750
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Ilrun
inflammation and lipid regulator with UBA-like and NBR1-like domains
involved_in
ISO
(PMID:29802199)
RGD
PMID:29802199
NCBI chr20:5,809,931...5,876,197
Ensembl chr20:5,809,936...5,876,012
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Irak3
interleukin-1 receptor-associated kinase 3
involved_in
ISO IBA
(PMID:15728517) GO_REF:0000033 (MGI:2183694|PMID:12150927)
RGD GO_Central
PMID:12150927 PMID:15728517
GO_REF:0000033 MGI:2183694
NCBI chr 7:55,653,949...55,714,371
Ensembl chr 7:55,653,962...55,713,121
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Lbp
lipopolysaccharide binding protein
involved_in
ISO IEA
(PMID:11739189) GO_REF:0000107
RGD Ensembl
PMID:11739189
GO_REF:0000107
NCBI chr 3:146,953,889...146,981,032
Ensembl chr 3:146,954,015...146,981,586
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Lgals9
galectin 9
involved_in
ISO
UniProtKB:Q8TDQ0 (PMID:25578313)
RGD
PMID:25578313
NCBI chr10:63,907,018...63,930,224
Ensembl chr10:63,907,018...63,930,045
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Lilrb4
leukocyte immunoglobulin like receptor B4
involved_in
ISO
(PMID:19833736)
RGD
PMID:19833736
NCBI chr 1:69,805,020...69,810,628
Ensembl chr 1:69,805,250...69,810,660
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Mc1r
melanocortin 1 receptor
involved_in
ISO
(PMID:10233018)
RGD
PMID:10233018
NCBI chr19:51,452,448...51,455,375
Ensembl chr19:51,453,239...51,454,192
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Mir101-2
microRNA 101-2
acts_upstream_of
ISO
(PMID:26022377)
RGD
PMID:26022377
NCBI chr 1:226,860,371...226,860,467
Ensembl chr 1:226,860,371...226,860,467
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Mir101a
microRNA 101a
acts_upstream_of
ISO
(PMID:26022377)
RGD
PMID:26022377
NCBI chr 5:115,966,332...115,966,406
Ensembl chr 5:115,966,328...115,966,410
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Mir105
microRNA 105
acts_upstream_of
ISO
(PMID:19509287)
RGD
PMID:19509287
NCBI chr X:150,438,529...150,438,601
Ensembl chr X:150,438,529...150,438,601
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Mir125b1
microRNA 125b-1
involved_in
ISO
(PMID:26435691)
RGD
PMID:26435691
NCBI chr 8:41,952,966...41,953,052
Ensembl chr 8:41,952,966...41,953,052
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Mir125b2
microRNA 125b-2
involved_in
ISO
(PMID:26435691)
RGD
PMID:26435691
NCBI chr11:16,245,620...16,245,707
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Mir130a
microRNA 130a
involved_in
ISO
(PMID:26435691)
RGD
PMID:26435691
NCBI chr 3:69,822,542...69,822,629
Ensembl chr 3:69,822,542...69,822,629
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Mir140
microRNA 140
acts_upstream_of
ISO IMP
(PMID:30321456)
RGD
PMID:30321456 PMID:32519270 PMID:31376096
RGD:329347827 , RGD:329337378
NCBI chr19:35,465,577...35,465,675
Ensembl chr19:35,465,577...35,465,675
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Mir154
microRNA 154
IMP
RGD
PMID:31746418
RGD:152995474
NCBI chr 6:128,752,947...128,753,030
Ensembl chr 6:128,752,947...128,753,030
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Mir181a2
microRNA 181a-2
involved_in
ISO
(PMID:23516523)
RGD
PMID:23516523
NCBI chr 3:22,615,845...22,615,961
Ensembl chr 3:22,615,845...22,615,961
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Mir185
microRNA 185
acts_upstream_of
ISO
(PMID:24803541)
RGD
PMID:24803541
NCBI chr11:82,664,716...82,664,795
Ensembl chr11:82,664,716...82,664,795
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Mir204
microRNA 204
acts_upstream_of
ISO
(PMID:29441883)
RGD
PMID:29441883
NCBI chr 1:220,316,931...220,317,040
Ensembl chr 1:220,316,931...220,317,040
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Mir488
microRNA 488
involved_in
ISO
(PMID:28915828)
RGD
PMID:28915828
NCBI chr13:70,683,064...70,683,142
Ensembl chr13:70,683,064...70,683,142
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Mir494
microRNA 494
IDA
RGD
PMID:30783439
RGD:150527846
NCBI chr 6:128,728,710...128,728,792
Ensembl chr 6:128,728,709...128,728,793
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Mir708
microRNA 708
acts_upstream_of
ISO
(PMID:31599428)
RGD
PMID:31599428
NCBI chr 1:150,599,876...150,599,963
Ensembl chr 1:150,599,876...150,599,963
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Mir98
microRNA 98
acts_upstream_of
ISO
(PMID:31886314)
RGD
PMID:31886314
NCBI chr X:20,981,235...20,981,342
Ensembl chr X:20,981,235...20,981,342
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Nfkbil1
NFKB inhibitor like 1
involved_in
ISS ISO
GO_REF:0000024 (PMID:20829348)
UniProt RGD
PMID:20829348
GO_REF:0000024
NCBI chr20:3,589,974...3,608,348
Ensembl chr20:3,590,642...3,605,616
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Nlrc3
NLR family, CARD domain containing 3
involved_in
ISO
(PMID:22863753) (MGI:5437524|PMID:22863753)
RGD
PMID:22863753
MGI:5437524
NCBI chr10:11,551,378...11,585,027
Ensembl chr10:11,551,356...11,584,398
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Nod2
nucleotide-binding oligomerization domain containing 2
acts_upstream_of_or_within
ISO
MGI:3529594 (PMID:19139201)
RGD
PMID:19139201
NCBI chr19:18,382,369...18,422,817
Ensembl chr19:18,382,439...18,417,177
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Nr1h4
nuclear receptor subfamily 1, group H, member 4
involved_in
ISO IEA
(PMID:21242261) GO_REF:0000107 (MGI:5707586|PMID:18972444)
RGD Ensembl
PMID:18972444 PMID:21242261
GO_REF:0000107 MGI:5707586
NCBI chr 7:23,846,122...23,942,085
Ensembl chr 7:23,846,122...23,942,047
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Orm1
orosomucoid 1
involved_in
ISO
(PMID:23973664)
RGD
PMID:23973664
NCBI chr 5:76,766,637...76,776,149
Ensembl chr 5:76,772,941...76,776,154
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Pomc
proopiomelanocortin
involved_in
ISO IEA
(PMID:10233018) GO_REF:0000107
RGD Ensembl
PMID:10233018
GO_REF:0000107
NCBI chr 6:26,939,844...26,945,666
Ensembl chr 6:26,939,837...26,945,664
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Ptger4
prostaglandin E receptor 4
IMP
RGD
PMID:15560120
RGD:10043380
NCBI chr 2:54,330,563...54,347,451
Ensembl chr 2:54,335,424...54,346,670
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Ptpn22
protein tyrosine phosphatase, non-receptor type 22
involved_in
ISO
(PMID:23991106) (MGI:5640942|PMID:23991106)
RGD
PMID:23991106
MGI:5640942
NCBI chr 2:191,366,761...191,414,782
Ensembl chr 2:191,366,808...191,414,779
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Ptpn6
protein tyrosine phosphatase, non-receptor type 6
involved_in
IEA ISO
GO_REF:0000107 UniProtKB:P97797 (MGI:3760575|PMID:17954568)
Ensembl RGD
PMID:17954568
GO_REF:0000107 MGI:3760575
NCBI chr 4:157,526,034...157,550,783
Ensembl chr 4:157,526,035...157,550,984
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Rad21
RAD21 cohesin complex component
IMP
RGD
PMID:36538854
RGD:243065265
NCBI chr 7:83,287,867...83,314,810
Ensembl chr 7:83,287,870...83,314,817
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Rara
retinoic acid receptor, alpha
involved_in
ISO
(PMID:18416830)
RGD
PMID:18416830
NCBI chr10:83,883,490...83,928,932
Ensembl chr10:83,893,384...83,928,142
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Selenos
selenoprotein S
involved_in
IEA ISO
GO_REF:0000107 (MGI:3773781|PMID:16227999)
Ensembl RGD
PMID:16227999
GO_REF:0000107 MGI:3773781
NCBI chr 1:119,659,779...119,669,546
Ensembl chr 1:119,659,751...119,669,833
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Sirpa
signal-regulatory protein alpha
involved_in
ISO
(MGI:3760575|PMID:17954568)
RGD
PMID:17954568
MGI:3760575
NCBI chr 3:116,819,730...116,858,099
Ensembl chr 3:116,819,726...116,858,098
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Sirt1
sirtuin 1
IMP
RGD
PMID:19299582
RGD:9585771
NCBI chr20:25,307,225...25,329,273
Ensembl chr20:25,306,917...25,329,260
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Slamf1
signaling lymphocytic activation molecule family member 1
involved_in
ISO
(PMID:16317102)
RGD
PMID:16317102
NCBI chr13:84,270,316...84,305,497
Ensembl chr13:84,270,316...84,305,497
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Syt11
synaptotagmin 11
involved_in
ISS IEA ISO
GO_REF:0000024 GO_REF:0000107 (MGI:5468041|PMID:23303671), (MGI:5780534|PMID:25063865), (MGI:5913303|PMID:28686317)
UniProt Ensembl RGD
PMID:23303671 PMID:25063865 PMID:28686317
GO_REF:0000024 GO_REF:0000107 MGI:5468041 MGI:5780534 MGI:5913303
NCBI chr 2:174,206,032...174,232,540
Ensembl chr 2:174,206,191...174,231,964
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Tlr4
toll-like receptor 4
involved_in
IEA ISO
GO_REF:0000107 (MGI:4421230|PMID:20051628)
Ensembl RGD
PMID:20051628
GO_REF:0000107 MGI:4421230
NCBI chr 5:80,145,867...80,159,501
Ensembl chr 5:80,145,826...80,159,628
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Tlr6
toll-like receptor 6
involved_in
ISO
ComplexPortal:CPX-1134 (MGI:5307186|PMID:22198949)
RGD
PMID:22198949
MGI:5307186
NCBI chr14:43,362,164...43,374,500
Ensembl chr14:43,362,164...43,375,685
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Tnfaip3
TNF alpha induced protein 3
involved_in
ISO
(MGI:4946158|PMID:21088135)
RGD
PMID:21088135
MGI:4946158
NCBI chr 1:13,709,211...13,724,291
Ensembl chr 1:13,709,206...13,725,282
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Trem2
triggering receptor expressed on myeloid cells 2
involved_in
ISO
(MGI:6294162|PMID:28592261)
RGD
PMID:28592261
MGI:6294162
NCBI chr 9:12,647,605...12,654,190
Ensembl chr 9:12,647,259...12,654,170
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Trim27
tripartite motif-containing 27
involved_in
ISO
(PMID:22128329)
RGD
PMID:22128329
NCBI chr17:43,538,282...43,550,633
Ensembl chr17:43,538,285...43,550,643
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Tspo
translocator protein
IDA
RGD
PMID:14678758
RGD:2317158
NCBI chr 7:114,720,188...114,730,450
Ensembl chr 7:114,720,188...114,730,450
G
Twist1
twist family bHLH transcription factor 1
acts_upstream_of_or_within
ISO
MGI:104685 (PMID:16831897)
RGD
PMID:16831897
NCBI chr 6:50,674,910...50,676,904
Ensembl chr 6:50,674,678...50,677,653
G
Twist2
twist family bHLH transcription factor 2
acts_upstream_of_or_within
ISO
MGI:3044412|MGI:98872 (PMID:16831897)
RGD
PMID:16831897
NCBI chr 9:92,374,740...92,419,222
Ensembl chr 9:92,374,574...92,419,222
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Vsir
V-set immunoregulatory receptor
involved_in
ISO
(PMID:24691993)
RGD
PMID:24691993
NCBI chr20:28,281,582...28,307,262
Ensembl chr20:28,281,596...28,303,878
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Zc3h12a
zinc finger CCCH type containing 12A
involved_in
ISS ISO
GO_REF:0000024 (MGI:5142149|PMID:21616078) (PMID:18178554)
UniProt RGD
PMID:18178554 PMID:21616078
GO_REF:0000024 MGI:5142149
NCBI chr 5:137,376,562...137,385,351
Ensembl chr 5:137,376,564...137,385,351
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Cd274
CD274 molecule
involved_in
ISO
(PMID:24187568)
RGD
PMID:24187568
NCBI chr 1:227,116,674...227,137,379
Ensembl chr 1:227,116,649...227,134,450
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Il17f
interleukin 17F
involved_in
ISO IEA
(PMID:11591732) GO_REF:0000107
RGD Ensembl
PMID:11591732
GO_REF:0000107
NCBI chr 9:23,190,094...23,201,482
Ensembl chr 9:23,190,100...23,201,482
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RT1-A2
RT1 class Ia, locus A2
involved_in
ISO
(PMID:25631937)
RGD
PMID:25631937
NCBI chr20:4,870,939...4,910,183
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Tnfrsf8
TNF receptor superfamily member 8
involved_in
ISO
(PMID:16108830)
RGD
PMID:16108830
NCBI chr 5:157,123,183...157,168,421
Ensembl chr 5:157,123,185...157,168,421
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Adam8
ADAM metallopeptidase domain 8
involved_in
ISO
(MGI:5009349|PMID:20683884)
RGD
PMID:20683884
MGI:5009349
NCBI chr 1:194,776,559...194,789,330
Ensembl chr 1:194,770,060...194,788,801
G
Ccn1
cellular communication network factor 1
IMP
RGD
PMID:27653023
RGD:150429754
NCBI chr 2:234,562,410...234,565,370
Ensembl chr 2:234,562,408...234,565,484
G
Ifng
interferon gamma
involved_in
ISO
(PMID:16220542)
RGD
PMID:16220542
NCBI chr 7:53,903,339...53,907,375
Ensembl chr 7:53,903,337...53,907,375
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Abcc8
ATP binding cassette subfamily C member 8
IMP
RGD
PMID:18854840
RGD:2325137
NCBI chr 1:96,598,568...96,679,563
Ensembl chr 1:96,598,647...96,679,510
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Ager
advanced glycosylation end product-specific receptor
involved_in
ISO IEA
UniProtKB:P05067 (MGI:5424311|PMID:22406537) GO_REF:0000107
RGD Ensembl
PMID:22406537
GO_REF:0000107 MGI:5424311
NCBI chr20:4,148,150...4,151,361
Ensembl chr20:4,147,890...4,151,078
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Akap12
A-kinase anchoring protein 12
IMP
RGD
PMID:19937403 PMID:17873284
RGD:14348968 , RGD:14348969
NCBI chr 1:40,730,123...40,819,863
Ensembl chr 1:40,730,123...40,819,886
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App
amyloid beta precursor protein
involved_in
ISO IEA
UniProtKB:P49768|UniProtKB:Q62151|UniProtKB:Q9QUN7 (PMID:22198949), (PMID:22406537), (PMID:29061364) GO_REF:0000107 UniProtKB:Q62151 (PMID:12808450) UniProtKB:Q62151 (MGI:6271381|PMID:12808450)
RGD Ensembl
PMID:12808450 PMID:22198949 PMID:22406537 PMID:29061364
GO_REF:0000107 MGI:6271381
NCBI chr11:24,019,774...24,236,584
Ensembl chr11:24,019,778...24,236,561
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Arfgef2
ADP ribosylation factor guanine nucleotide exchange factor 2
involved_in
ISS ISO
GO_REF:0000024 (PMID:17276987)
UniProt RGD
PMID:17276987
GO_REF:0000024
NCBI chr 3:155,547,504...155,633,652
Ensembl chr 3:155,547,538...155,630,856
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Arhgef2
Rho/Rac guanine nucleotide exchange factor 2
involved_in
ISS IEA ISO
GO_REF:0000024 GO_REF:0000107 (PMID:21887730)
UniProt Ensembl RGD
PMID:21887730
GO_REF:0000024 GO_REF:0000107
NCBI chr 2:174,061,126...174,118,355
Ensembl chr 2:174,062,976...174,118,355
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Arid5a
AT-rich interaction domain 5A
involved_in
ISO
(MGI:5887181|PMID:27671645)
RGD
PMID:27671645
MGI:5887181
NCBI chr 9:38,534,612...38,549,467
Ensembl chr 9:38,534,590...38,547,597
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Btk
Bruton tyrosine kinase
IMP
RGD
PMID:28352114
RGD:151665126
NCBI chr X:97,722,796...97,762,315
Ensembl chr X:97,722,802...97,761,853
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C1qtnf4
C1q and TNF related 4
involved_in
ISO
(PMID:21658842)
RGD
PMID:21658842
NCBI chr 3:76,854,368...76,872,991
Ensembl chr 3:76,857,735...76,874,139
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Card9
caspase recruitment domain family, member 9
acts_upstream_of_or_within
ISO
MGI:3698412 (PMID:17187069)
RGD
PMID:17187069
NCBI chr 3:9,171,814...9,180,310
Ensembl chr 3:9,171,815...9,180,237
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Ccl19
C-C motif chemokine ligand 19
involved_in
ISO
(MGI:3576832|PMID:15845453)
RGD
PMID:15845453
MGI:3576832
NCBI chr 5:56,963,364...56,965,308
Ensembl chr 5:56,963,364...56,965,308
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Ccl2
C-C motif chemokine ligand 2
IMP
RGD
PMID:24826069
RGD:8661667
NCBI chr10:67,005,424...67,007,222
Ensembl chr10:67,005,424...67,007,226
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Ccl3
C-C motif chemokine ligand 3
involved_in
ISS ISO
GO_REF:0000024 UniProtKB:P22893 (MGI:5301204|PMID:21784977)
UniProt RGD
PMID:21784977
GO_REF:0000024 MGI:5301204
NCBI chr10:68,451,388...68,452,938
Ensembl chr10:68,451,388...68,452,938
G
Ccl4
C-C motif chemokine ligand 4
IMP
RGD
PMID:10679105
RGD:68880
NCBI chr10:68,466,394...68,468,229
Ensembl chr10:68,452,052...68,468,231
G
Ccn1
cellular communication network factor 1
IMP
RGD
PMID:27653023
RGD:150429754
NCBI chr 2:234,562,410...234,565,370
Ensembl chr 2:234,562,408...234,565,484
G
Ccr2
C-C motif chemokine receptor 2
involved_in
IMP ISO ISS
(MGI:3814510|PMID:18832716) GO_REF:0000024
RGD BHF-UCL
PMID:18832716 PMID:24826069
GO_REF:0000024 MGI:3814510 , RGD:8661667
NCBI chr 8:123,734,465...123,742,483
Ensembl chr 8:123,734,430...123,742,100
G
Ccr5
C-C motif chemokine receptor 5
IMP
RGD
PMID:16790532
RGD:1598562
NCBI chr 8:123,752,423...123,757,538
Ensembl chr 8:123,752,325...123,759,260
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Cd14
CD14 molecule
involved_in acts_upstream_of_or_within
ISS ISO
GO_REF:0000024 (PMID:8612135) (PMID:12594207) (MGI:80217|PMID:8612135)
UniProt RGD
PMID:8612135 PMID:12594207
GO_REF:0000024 MGI:80217
NCBI chr18:28,335,522...28,337,383
Ensembl chr18:28,335,340...28,337,261
G
Cd2
Cd2 molecule
involved_in
ISO
(PMID:19109405)
RGD
PMID:19109405
NCBI chr 2:188,710,895...188,724,044
Ensembl chr 2:188,710,900...188,724,026
G
Cd36
CD36 molecule
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:2447190|MGI:3573941 (PMID:15690042), (PMID:16061696)
Ensembl RGD
PMID:15690042 PMID:16061696
GO_REF:0000107
NCBI chr 4:17,317,343...17,410,084
Ensembl chr 4:17,354,466...17,513,903
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Cd84
CD84 molecule
involved_in
ISO IBA
(MGI:5700297|PMID:20628063) GO_REF:0000033
RGD GO_Central
PMID:20628063
GO_REF:0000033 MGI:5700297
NCBI chr13:84,327,580...84,367,153
Ensembl chr13:84,327,553...84,362,076
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Clec4m
C-type lectin domain family 4 member M
acts_upstream_of_or_within
ISO
(PMID:14707091)
RGD
PMID:14707091
NCBI chr12:1,915,902...1,924,529
Ensembl chr12:1,915,919...1,924,539
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Clec7a
C-type lectin domain containing 7A
involved_in acts_upstream_of_or_within
ISO
(PMID:19358895) (PMID:12719478), (PMID:14707091) (MGI:3844414|PMID:19136564)
RGD
PMID:12719478 PMID:14707091 PMID:19136564 PMID:19358895
MGI:3844414
NCBI chr 4:162,902,731...162,913,931
Ensembl chr 4:162,902,732...162,913,897
G
Clu
clusterin
involved_in
ISO ISS IEA
(PMID:15857407) GO_REF:0000024 GO_REF:0000107
RGD Alzheimers_University_of_Toronto Ensembl
PMID:15857407
GO_REF:0000024 GO_REF:0000107
NCBI chr15:40,161,068...40,200,315
Ensembl chr15:40,174,617...40,200,315
G
Csf1r
colony stimulating factor 1 receptor
IMP
RGD
PMID:18434589
RGD:151665814
NCBI chr18:54,546,673...54,590,418
Ensembl chr18:54,546,659...54,590,415
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Cyba
cytochrome b-245 alpha chain
involved_in
ISO IEA
(PMID:22423966) GO_REF:0000107
RGD Ensembl
PMID:22423966
GO_REF:0000107
NCBI chr19:50,487,598...50,495,669
Ensembl chr19:50,487,597...50,495,721
G
Cybb
cytochrome b-245 beta chain
IMP
RGD
PMID:19318376
RGD:11040691
NCBI chr X:13,358,101...13,392,570
Ensembl chr X:13,359,430...13,392,586
G
Cyp2j4
cytochrome P450, family 2, subfamily j, polypeptide 4
IMP
RGD
PMID:25840911 PMID:29656108
RGD:12904676 , RGD:150520032
NCBI chr 5:111,179,981...111,207,490
Ensembl chr 5:111,178,703...111,244,794
G
Ddt
D-dopachrome tautomerase
involved_in
ISO
(PMID:21817065)
RGD
PMID:21817065
NCBI chr20:12,884,216...12,886,687
Ensembl chr20:12,884,243...12,888,482
G
Dhx9
DExH-box helicase 9
involved_in
ISO
(PMID:20696886), (PMID:21957149)
RGD
PMID:20696886 PMID:21957149
NCBI chr13:65,602,322...65,639,098
Ensembl chr13:65,602,323...65,639,069
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Ephb2
Eph receptor B2
involved_in
ISO
(PMID:24803541)
RGD
PMID:24803541
NCBI chr 5:148,889,574...149,077,027
Ensembl chr 5:148,897,246...149,077,059
G
Fadd
Fas associated via death domain
involved_in
ISO
(PMID:16127453)
RGD
PMID:16127453
NCBI chr 1:199,743,200...199,745,746
Ensembl chr 1:199,739,994...199,745,653
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Fcer1g
Fc epsilon receptor Ig
acts_upstream_of_or_within
ISO
MGI:1857165|MGI:2384004 (PMID:10229794), (PMID:14764707)
RGD
PMID:10229794 PMID:14764707
NCBI chr13:83,649,447...83,654,248
Ensembl chr13:83,649,449...83,671,443
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Fcgr2a
Fc gamma receptor 2A
involved_in acts_upstream_of_or_within
IBA ISO
GO_REF:0000033 MGI:1861924 (PMID:10229794)
GO_Central RGD
PMID:10229794
GO_REF:0000033
NCBI chr13:83,280,782...83,297,535
Ensembl chr13:83,280,784...83,295,967
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Fcgr2al1
Fc gamma receptor 2A like 1
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr13:83,302,874...83,315,744
Ensembl chr13:83,280,790...83,484,920
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Fcgr2b
Fc gamma receptor 2B
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr13:83,191,253...83,207,778
Ensembl chr13:83,193,163...83,207,778
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Fcgr3a
Fc gamma receptor 3A
involved_in
ISO
(PMID:10728755)
RGD
PMID:10728755
NCBI chr13:83,249,905...83,259,921
Ensembl chr13:83,249,872...83,259,921
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Frmd8
FERM domain containing 8
involved_in
ISS ISO
GO_REF:0000024 (PMID:29897333), (PMID:29897336)
UniProt RGD
PMID:29897333 PMID:29897336
GO_REF:0000024
NCBI chr 1:203,143,216...203,163,868
Ensembl chr 1:203,143,218...203,163,870
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Fzd5
frizzled class receptor 5
involved_in
IEA ISO
GO_REF:0000107 ComplexPortal:CPX-1134|UniProtKB:P22725 (MGI:5291547|PMID:21857966)
Ensembl RGD
PMID:21857966
GO_REF:0000107 MGI:5291547
NCBI chr 9:66,113,096...66,120,276
Ensembl chr 9:66,113,112...66,121,457
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Havcr2
hepatitis A virus cellular receptor 2
involved_in
ISO
(PMID:18006747) (MGI:3763563|PMID:18006747)
RGD
PMID:18006747
MGI:3763563
NCBI chr10:30,882,484...30,914,018
Ensembl chr10:30,882,606...30,909,137
G
Hdac1
histone deacetylase 1
IMP
RGD
PMID:22772764
RGD:9590127
NCBI chr 5:141,853,992...141,881,057
Ensembl chr 5:141,853,989...141,881,111
G
Hdac2
histone deacetylase 2
IMP
RGD
PMID:22772764
RGD:9590127
NCBI chr20:40,548,244...40,571,609
Ensembl chr20:40,548,250...40,571,609
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Hmgb1
high mobility group box 1
involved_in
IMP ISO IDA
(PMID:12765338) PMID:10952726 (MGI:4367121|PMID:19890330), (MGI:5913663|PMID:19264983)
RGD
PMID:12765338 PMID:19264983 PMID:19890330 PMID:22514737 PMID:10952726
MGI:4367121 MGI:5913663 , RGD:10402175 , RGD:10054071
NCBI chr12:5,972,950...5,979,658
Ensembl chr12:5,901,586...5,978,565 Ensembl chr16:5,901,586...5,978,565
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Hspb1
heat shock protein family B (small) member 1
involved_in
IEA ISO
GO_REF:0000107 (MGI:5050077|PMID:12385642)
Ensembl RGD
PMID:12385642
GO_REF:0000107 MGI:5050077
NCBI chr12:20,794,014...20,795,675
Ensembl chr12:20,794,028...20,795,743
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Hspd1
heat shock protein family D (Hsp60) member 1
IMP
RGD
PMID:23447644
RGD:10402845
NCBI chr 9:56,579,195...56,590,011
Ensembl chr 9:56,579,201...56,589,662
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Ifih1
interferon induced with helicase C domain 1
involved_in
ISO
(PMID:21957149)
RGD
PMID:21957149
NCBI chr 3:47,228,980...47,275,403
Ensembl chr 3:47,227,364...47,275,456
G
Ifng
interferon gamma
involved_in
ISO
ComplexPortal:CPX-1062|UniProtKB:P05067|UniProtKB:P15261|UniProtKB:P49768 (MGI:3697769|PMID:17255335), (MGI:4942276|PMID:2502420), (MGI:4943415|PMID:1845803), (MGI:5776417|PMID:26227742), (MGI:6304699|PMID:29061364), (MGI:6305053|PMID:7715705)
RGD
PMID:1845803 PMID:2502420 PMID:7715705 PMID:17255335 PMID:26227742 PMID:29061364 More...
MGI:3697769 MGI:4942276 MGI:4943415 MGI:5776417 MGI:6304699 MGI:6305053
NCBI chr 7:53,903,339...53,907,375
Ensembl chr 7:53,903,337...53,907,375
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Ifngr1
interferon gamma receptor 1
involved_in
ISO
UniProtKB:P01579 (MGI:3697769|PMID:17255335)
RGD
PMID:17255335
MGI:3697769
NCBI chr 1:14,333,167...14,351,799
Ensembl chr 1:14,333,187...14,351,785
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Il12b
interleukin 12B
involved_in
ISO
(PMID:16751425)
RGD
PMID:16751425
NCBI chr10:28,888,832...28,903,802
Ensembl chr10:28,893,008...28,902,903
G
Il17a
interleukin 17A
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 (PMID:29734196)
Ensembl RGD
PMID:29734196
GO_REF:0000107
NCBI chr 9:23,144,402...23,147,889
Ensembl chr 9:23,144,402...23,147,889
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Il18
interleukin 18
IMP
RGD
PMID:17623049
RGD:4889480
NCBI chr 8:50,904,630...50,932,887
Ensembl chr 8:50,906,960...50,932,887
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Il1a
interleukin 1 alpha
acts_upstream_of
IMP
PMID:31172560
ARUK-UCL
PMID:31172560
RGD:15023467
NCBI chr 3:116,526,601...116,537,055
Ensembl chr 3:116,526,604...116,536,822
G
Il23a
interleukin 23 subunit alpha
involved_in
ISO
(PMID:16751425)
RGD
PMID:16751425
NCBI chr 7:721,809...723,923
Ensembl chr 7:721,809...723,923
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Il33
interleukin 33
involved_in acts_upstream_of acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 (MGI:6414704|PMID:26936882)
Ensembl RGD
PMID:26936882
GO_REF:0000107 MGI:6414704
NCBI chr 1:227,701,964...227,736,374
Ensembl chr 1:227,721,435...227,736,373
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Il6
interleukin 6
involved_in
ISO
(PMID:31886314)
RGD
PMID:31886314
NCBI chr 4:5,214,602...5,219,178
Ensembl chr 4:5,213,394...5,219,178
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Isl1
ISL LIM homeobox 1
involved_in
ISO IEA
(MGI:5437583|PMID:22727192) GO_REF:0000107
RGD Ensembl
PMID:22727192
GO_REF:0000107 MGI:5437583
NCBI chr 2:48,079,412...48,090,704
Ensembl chr 2:48,080,522...48,095,584
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Jak2
Janus kinase 2
involved_in
ISO
UniProtKB:P01580 (MGI:5009182|PMID:12426001), (MGI:5776417|PMID:26227742)
RGD
PMID:12426001 PMID:26227742
MGI:5009182 MGI:5776417
NCBI chr 1:226,995,334...227,054,381
Ensembl chr 1:226,995,334...227,054,189
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Lbp
lipopolysaccharide binding protein
involved_in acts_upstream_of_or_within
ISS ISO IEA
GO_REF:0000024 MGI:1857975 (PMID:12055258) GO_REF:0000107 (PMID:12594207) (PMID:24120359), (PMID:8409400) (MGI:1097829|PMID:9338787), (MGI:3807766|PMID:12932360), (MGI:5645195|PMID:24380872)
UniProt RGD Ensembl
PMID:8409400 PMID:9338787 PMID:12055258 PMID:12594207 PMID:12932360 PMID:24120359 PMID:24380872 More...
GO_REF:0000024 GO_REF:0000107 MGI:1097829 MGI:3807766 MGI:5645195
NCBI chr 3:146,953,889...146,981,032
Ensembl chr 3:146,954,015...146,981,586
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Lep
leptin
involved_in
ISS ISO
GO_REF:0000024 (MGI:3690675|PMID:9438411)
UniProt RGD
PMID:9438411
GO_REF:0000024 MGI:3690675
NCBI chr 4:57,661,127...57,675,262
Ensembl chr 4:57,661,131...57,675,262
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Lgals9
galectin 9
involved_in
ISO
(PMID:20209097) (MGI:5645190|PMID:25158758)
RGD
PMID:20209097 PMID:25158758
MGI:5645190
NCBI chr10:63,907,018...63,930,224
Ensembl chr10:63,907,018...63,930,045
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Lilra5
leukocyte immunoglobulin like receptor A5
involved_in
ISO
(PMID:12393390), (PMID:19009525)
RGD
PMID:12393390 PMID:19009525
NCBI chr 1:69,973,292...69,978,750
Ensembl chr 1:69,973,292...70,001,718
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Lpl
lipoprotein lipase
involved_in
ISO IEA
RNAcentral:URS00005C83FD_10090 (MGI:6282927|PMID:22963823) GO_REF:0000107
RGD Ensembl
PMID:22963823
GO_REF:0000107 MGI:6282927
NCBI chr16:20,830,055...20,853,855
Ensembl chr16:20,829,465...20,855,249
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Lrrfip2
LRR binding FLII interacting protein 2
acts_upstream_of_or_within
ISO
(PMID:19265123)
RGD
PMID:19265123
NCBI chr 8:111,091,453...111,193,947
Ensembl chr 8:111,091,503...111,193,255
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Lrrk2
leucine-rich repeat kinase 2
IMP
RGD
PMID:22302802
RGD:13462052
NCBI chr 7:122,826,696...122,987,711
Ensembl chr 7:122,826,696...122,987,703
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Ly96
lymphocyte antigen 96
involved_in
ISO
(MGI:5645195|PMID:24380872)
RGD
PMID:24380872
MGI:5645195
NCBI chr 5:2,582,233...2,612,357
Ensembl chr 5:2,582,254...2,612,386
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Mapkapk2
MAPK activated protein kinase 2
acts_upstream_of_or_within
ISO
(PMID:24020373)
RGD
PMID:24020373
NCBI chr13:42,513,762...42,560,061
Ensembl chr13:42,513,762...42,560,457
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Mavs
mitochondrial antiviral signaling protein
involved_in
ISS ISO
GO_REF:0000024 (PMID:16127453), (PMID:21957149)
UniProt RGD
PMID:16127453 PMID:21957149
GO_REF:0000024
NCBI chr 3:118,451,650...118,466,094
Ensembl chr 3:118,451,743...118,466,094
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Mif
macrophage migration inhibitory factor
involved_in
ISO
(PMID:21817065)
RGD
PMID:21817065
NCBI chr20:12,790,919...12,791,784
Ensembl chr20:12,790,902...12,799,504
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Mir144
microRNA 144
involved_in
ISO
(PMID:24733347)
RGD
PMID:24733347
NCBI chr10:62,961,348...62,961,430
Ensembl chr10:62,961,348...62,961,430
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Mir206
microRNA 206
involved_in
ISO
(PMID:27277332)
RGD
PMID:27277332
NCBI chr 9:23,094,249...23,094,332
Ensembl chr 9:23,094,249...23,094,332
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Mir23a
microRNA 23a
IMP
RGD
PMID:33403590
RGD:155882539
NCBI chr19:23,954,997...23,955,071
Ensembl chr19:23,954,997...23,955,071
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Mir27b
microRNA 27b
acts_upstream_of
ISO
(PMID:20164187)
RGD
PMID:20164187
NCBI chr17:1,813,427...1,813,523
Ensembl chr17:1,813,426...1,813,529
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Mmp8
matrix metallopeptidase 8
involved_in
IEA ISO IMP
GO_REF:0000107 (PMID:25049354) (MGI:6201889|PMID:25049354)
Ensembl RGD
PMID:25049354 PMID:25049354
GO_REF:0000107 MGI:6201889 , RGD:13792525
NCBI chr 8:4,724,009...4,733,864
Ensembl chr 8:4,724,029...4,733,520
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Myd88
MYD88, innate immune signal transduction adaptor
acts_upstream_of_or_within
ISO
MGI:2147032|MGI:2385681 (PMID:10607756), (PMID:11067888), (PMID:12719478), (PMID:12872135)
RGD
PMID:10607756 PMID:11067888 PMID:12719478 PMID:12872135
NCBI chr 8:119,074,439...119,078,508
Ensembl chr 8:119,074,437...119,079,415
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Ncl
nucleolin
IMP
RGD
PMID:21309751
RGD:9686449
NCBI chr 9:86,999,588...87,008,112
Ensembl chr 9:86,998,019...87,008,136
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Nfatc4
nuclear factor of activated T-cells 4
acts_upstream_of_or_within
ISO
(PMID:17242187)
RGD
PMID:17242187
NCBI chr15:29,286,998...29,314,610
Ensembl chr15:29,305,535...29,314,610
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Nod1
nucleotide-binding oligomerization domain containing 1
acts_upstream_of_or_within
IMP ISO
MGI:2429397|MGI:2674231 (PMID:18261938)
RGD
PMID:18261938 PMID:22450316
RGD:9831170
NCBI chr 4:84,060,871...84,111,668
Ensembl chr 4:84,060,880...84,111,404
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Nod2
nucleotide-binding oligomerization domain containing 2
involved_in acts_upstream_of_or_within
ISO
(PMID:21040358) MGI:1341839|MGI:2680581|MGI:3529594 (PMID:15220916), (PMID:18261938) (PMID:17187069)
RGD
PMID:15220916 PMID:17187069 PMID:18261938 PMID:21040358
NCBI chr19:18,382,369...18,422,817
Ensembl chr19:18,382,439...18,417,177
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Oas1a
2'-5' oligoadenylate synthetase 1A
involved_in
ISO
(PMID:30822544)
RGD
PMID:30822544
NCBI chr12:35,669,798...35,680,505
Ensembl chr12:35,669,801...35,680,517
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Oas2
2'-5' oligoadenylate synthetase 2
involved_in
ISO IEA
(PMID:30822544) GO_REF:0000107
RGD Ensembl
PMID:30822544
GO_REF:0000107
NCBI chr12:35,802,824...35,830,778
Ensembl chr12:35,806,759...35,829,371
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Oas3
2'-5'-oligoadenylate synthetase 3
involved_in
ISO IEA
(PMID:30822544) GO_REF:0000107
RGD Ensembl
PMID:30822544
GO_REF:0000107
NCBI chr12:35,779,028...35,802,781
Ensembl chr12:35,779,022...35,802,781
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Orm1
orosomucoid 1
involved_in
ISO
(PMID:8774350)
RGD
PMID:8774350
NCBI chr 5:76,766,637...76,776,149
Ensembl chr 5:76,772,941...76,776,154
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Pf4
platelet factor 4
involved_in
ISO
(PMID:10666185)
RGD
PMID:10666185
NCBI chr14:17,298,304...17,299,220
Ensembl chr14:17,298,308...17,299,365
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Pik3r1
phosphoinositide-3-kinase regulatory subunit 1
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 (PMID:17242187)
Ensembl RGD
PMID:17242187
GO_REF:0000107
NCBI chr 2:32,878,942...32,963,668
Ensembl chr 2:32,882,032...32,963,631
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Plcg2
phospholipase C, gamma 2
involved_in
IEA ISO
GO_REF:0000107 (MGI:3844414|PMID:19136564), (MGI:5300086|PMID:22041900)
Ensembl RGD
PMID:19136564 PMID:22041900
GO_REF:0000107 MGI:3844414 MGI:5300086
NCBI chr19:45,547,416...45,683,930
Ensembl chr19:45,547,416...45,683,930
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Psen1
presenilin 1
involved_in
ISO
UniProtKB:P05067 (PMID:29061364)
RGD
PMID:29061364
NCBI chr 6:103,323,052...103,375,088
Ensembl chr 6:103,323,120...103,371,650
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Ptafr
platelet-activating factor receptor
IMP
RGD
PMID:2545780
RGD:10043183
NCBI chr 5:144,765,770...144,795,057
Ensembl chr 5:144,765,976...144,795,251
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Pten
phosphatase and tensin homolog
IMP
RGD
PMID:30783439
RGD:150527846
NCBI chr 1:230,630,443...230,697,070
Ensembl chr 1:230,630,338...230,696,838
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Ptpn11
protein tyrosine phosphatase, non-receptor type 11
involved_in
ISO IEA
UniProtKB:P97797 (MGI:3760575|PMID:17954568) GO_REF:0000107
RGD Ensembl
PMID:17954568
GO_REF:0000107 MGI:3760575
NCBI chr12:35,365,436...35,424,925
Ensembl chr12:35,383,144...35,424,925
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Ptprc
protein tyrosine phosphatase, receptor type, C
involved_in
ISO
UniProtKB:Q64455 (MGI:3774343|PMID:18249142)
RGD
PMID:18249142
MGI:3774343
NCBI chr13:49,596,193...49,708,283
Ensembl chr13:49,596,193...49,708,692
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Ptprj
protein tyrosine phosphatase, receptor type, J
involved_in
ISO
UniProtKB:P06800 (MGI:3774343|PMID:18249142)
RGD
PMID:18249142
MGI:3774343
NCBI chr 3:76,405,917...76,561,842
Ensembl chr 3:76,405,927...76,562,260
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Pycard
PYD and CARD domain containing
involved_in
ISO
(PMID:16982856), (PMID:21487011)
RGD
PMID:16982856 PMID:21487011
NCBI chr 1:182,601,657...182,603,013
Ensembl chr 1:182,601,174...182,602,955
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Rasgrp1
RAS guanyl releasing protein 1
involved_in
ISO IEA
(PMID:19933860) GO_REF:0000107
RGD Ensembl
PMID:19933860
GO_REF:0000107
NCBI chr 3:104,168,549...104,230,107
Ensembl chr 3:104,170,013...104,230,056
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Rig1
RNA sensor RIG-1
involved_in
ISO
(PMID:21957149)
RGD
PMID:21957149
NCBI chr 5:55,321,351...55,369,947
Ensembl chr 5:55,321,235...55,370,819
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Ripk1
receptor interacting serine/threonine kinase 1
involved_in
ISO
(PMID:16127453)
RGD
PMID:16127453
NCBI chr17:30,839,639...30,871,824
Ensembl chr17:30,839,650...30,871,824
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Ripk2
receptor-interacting serine-threonine kinase 2
involved_in acts_upstream_of_or_within
ISO
(MGI:5543891|PMID:21887730) MGI:2660793 (PMID:11894098), (PMID:18261938)
RGD
PMID:11894098 PMID:18261938 PMID:21887730
MGI:5543891
NCBI chr 5:29,630,806...29,662,804
Ensembl chr 5:29,631,570...29,662,657
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RT1-A2
RT1 class Ia, locus A2
involved_in
ISO
(PMID:25631937)
RGD
PMID:25631937
NCBI chr20:4,870,939...4,910,183
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Sash3
SAM and SH3 domain containing 3
acts_upstream_of_or_within
ISO
MGI:3716944 (PMID:16227612)
RGD
PMID:16227612
NCBI chr X:127,326,815...127,341,521
Ensembl chr X:127,326,859...127,341,519
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Selenok
selenoprotein K
involved_in
ISO
(MGI:4939970|PMID:21220695)
RGD
PMID:21220695
MGI:4939970
NCBI chr16:5,152,066...5,160,648
Ensembl chr16:5,152,066...5,159,188
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Setd4
SET domain containing 4
involved_in
ISO
(MGI:6694359|PMID:31376731)
RGD
PMID:31376731
MGI:6694359
NCBI chr11:32,829,509...32,859,162
Ensembl chr11:32,838,063...32,858,243
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Sphk2
sphingosine kinase 2
involved_in
ISO
(MGI:3703830|PMID:17346996)
RGD
PMID:17346996
MGI:3703830
NCBI chr 1:96,180,872...96,188,592
Ensembl chr 1:96,180,887...96,188,391
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Spn
sialophorin
acts_upstream_of_or_within
ISO
(PMID:10899905) MGI:1857246 (PMID:10899905)
RGD
PMID:10899905
NCBI chr 1:181,746,937...181,759,564
Ensembl chr 1:181,746,429...181,759,628
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Spon2
spondin 2
acts_upstream_of_or_within
ISO
MGI:3026870 (PMID:14691481)
RGD
PMID:14691481
NCBI chr14:77,505,695...77,518,001
Ensembl chr14:77,511,901...77,517,996
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Stat3
signal transducer and activator of transcription 3
involved_in
ISO IEA
RNAcentral:URS00004E0808_9606|UniProtKB:P05231 (PMID:31886314) GO_REF:0000107
RGD Ensembl
PMID:31886314
GO_REF:0000107
NCBI chr10:85,811,206...85,863,057
Ensembl chr10:85,811,218...85,863,057
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Syk
spleen associated tyrosine kinase
involved_in
ISO IEA
(PMID:19358895) GO_REF:0000107
RGD Ensembl
PMID:19358895
GO_REF:0000107
NCBI chr17:12,604,615...12,678,437
Ensembl chr17:12,604,619...12,661,410
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Tgfb1
transforming growth factor, beta 1
involved_in
ISO
(PMID:32141990)
RGD
PMID:32141990
NCBI chr 1:81,196,532...81,212,848
Ensembl chr 1:81,196,532...81,212,847
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Thbs1
thrombospondin 1
involved_in
ISO
(PMID:18726995)
RGD
PMID:18726995
NCBI chr 3:105,056,293...105,071,445
Ensembl chr 3:105,056,292...105,071,440
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Ticam1
TIR domain containing adaptor molecule 1
acts_upstream_of_or_within
ISO
MGI:108005|MGI:2679794|MGI:3029019 (PMID:12855817), (PMID:12872135)
RGD
PMID:12855817 PMID:12872135
NCBI chr 9:1,102,559...1,111,023
Ensembl chr 9:1,102,366...1,123,147
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Tirap
TIR domain containing adaptor protein
involved_in acts_upstream_of_or_within
ISO IBA
(PMID:16301656), (PMID:19509286) MGI:3573942 (PMID:15690042) GO_REF:0000033 (MGI:3531416|PMID:12447442), (MGI:3713420|PMID:16301656)
RGD GO_Central
PMID:12447442 PMID:15690042 PMID:16301656 PMID:19509286
GO_REF:0000033 MGI:3531416 MGI:3713420
NCBI chr 8:33,531,724...33,548,508
Ensembl chr 8:33,531,725...33,547,432
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Tlr1
toll-like receptor 1
involved_in
ISO
(MGI:3609367|PMID:12077222)
RGD
PMID:12077222
MGI:3609367
NCBI chr14:43,384,127...43,396,765
Ensembl chr14:43,384,932...43,397,125
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Tlr2
toll-like receptor 2
involved_in acts_upstream_of_or_within
ISO
ComplexPortal:CPX-1134|UniProtKB:P05067|UniProtKB:P49768 (MGI:4456948|PMID:15356140), (MGI:5307186|PMID:22198949) MGI:2178675|MGI:2674036 (PMID:10549626), (PMID:11067888), (PMID:12719478), (PMID:15690042), (PMID:16239543)
RGD
PMID:10549626 PMID:11067888 PMID:12719478 PMID:15356140 PMID:15690042 PMID:16239543 PMID:22198949 More...
MGI:4456948 MGI:5307186
NCBI chr 2:169,200,620...169,206,819
Ensembl chr 2:169,197,419...169,206,630
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Tlr3
toll-like receptor 3
involved_in acts_upstream_of_or_within
ISO
(MGI:4456948|PMID:15356140) MGI:2653138 (PMID:17008311)
RGD
PMID:15356140 PMID:17008311
MGI:4456948
NCBI chr16:46,821,980...46,837,900
Ensembl chr16:46,822,039...46,836,545
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Tlr4
toll-like receptor 4
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:1857718|MGI:1860755|MGI:1860885 (PMID:10549626), (PMID:10607756), (PMID:10623794), (PMID:14691481), (PMID:18261938) (MGI:4456948|PMID:15356140) (PMID:17951129), (PMID:30321456)
Ensembl RGD
PMID:10549626 PMID:10607756 PMID:10623794 PMID:14691481 PMID:15356140 PMID:17951129 PMID:18261938 PMID:30321456 More...
GO_REF:0000107 MGI:4456948
NCBI chr 5:80,145,867...80,159,501
Ensembl chr 5:80,145,826...80,159,628
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Tlr9
toll-like receptor 9
involved_in
ISO
(MGI:3828189|PMID:18931679), (MGI:4456948|PMID:15356140)
RGD
PMID:15356140 PMID:18931679
MGI:3828189 MGI:4456948
NCBI chr 8:106,864,680...106,868,796
Ensembl chr 8:106,864,680...106,868,796
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Tmem106a
transmembrane protein 106A
involved_in
ISS ISO
GO_REF:0000024 (MGI:6216178|PMID:26215746)
UniProt RGD
PMID:26215746
GO_REF:0000024 MGI:6216178
NCBI chr10:86,506,908...86,515,915
Ensembl chr10:86,506,936...86,515,892
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Tnfrsf1a
TNF receptor superfamily member 1A
IMP
RGD
PMID:20967881
RGD:5130945
NCBI chr 4:158,150,815...158,163,592
Ensembl chr 4:158,150,820...158,163,591
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Tnfrsf8
TNF receptor superfamily member 8
involved_in
ISO
(PMID:16108830)
RGD
PMID:16108830
NCBI chr 5:157,123,183...157,168,421
Ensembl chr 5:157,123,185...157,168,421
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Twist1
twist family bHLH transcription factor 1
involved_in
ISO
(PMID:20007935)
RGD
PMID:20007935
NCBI chr 6:50,674,910...50,676,904
Ensembl chr 6:50,674,678...50,677,653
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Tyrobp
transmembrane immune signaling adaptor Tyrobp
involved_in
ISO
(MGI:5638298|PMID:25690660)
RGD
PMID:25690660
MGI:5638298
NCBI chr 1:85,672,931...85,676,856
Ensembl chr 1:85,672,994...85,676,848
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Wnt5a
Wnt family member 5A
involved_in
ISO IEA
ComplexPortal:CPX-1134|UniProtKB:Q9EQD0 (MGI:5291547|PMID:21857966) GO_REF:0000107
RGD Ensembl
PMID:21857966
GO_REF:0000107 MGI:5291547
NCBI chr16:3,697,032...3,718,230
Ensembl chr16:3,697,032...3,718,234
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Zbtb20
zinc finger and BTB domain containing 20
involved_in
ISO
(MGI:5619432|PMID:23776228)
RGD
PMID:23776228
MGI:5619432
NCBI chr11:57,052,129...57,791,214
Ensembl chr11:57,072,880...57,510,210
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Park7
Parkinsonism associated deglycase
NOT|involved_in
ISO
(PMID:21785459)
RGD
PMID:21785459
NCBI chr 5:161,353,718...161,376,993
Ensembl chr 5:161,353,719...161,376,970
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Angpt1
angiopoietin 1
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 (PMID:20060382)
Ensembl RGD
PMID:20060382
GO_REF:0000107
NCBI chr 7:73,528,345...73,783,953
Ensembl chr 7:73,531,486...73,784,067
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Card9
caspase recruitment domain family, member 9
acts_upstream_of_or_within
ISO
MGI:3663486 (PMID:16862125)
RGD
PMID:16862125
NCBI chr 3:9,171,814...9,180,310
Ensembl chr 3:9,171,815...9,180,237
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Cd300ld
Cd300 molecule-like family member D
acts_upstream_of_or_within
ISO
(PMID:17543387)
RGD
PMID:17543387
NCBI chr10:100,082,957...100,115,853
Ensembl chr10:100,083,490...100,115,821
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Cd47
Cd47 molecule
involved_in
ISO
(PMID:11509594)
RGD
PMID:11509594
NCBI chr11:50,906,052...50,970,000
Ensembl chr11:50,906,177...50,969,425
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Cx3cr1
C-X3-C motif chemokine receptor 1
involved_in
ISO
UniProtKB:P05067 (MGI:6162390|PMID:23499256)
RGD
PMID:23499256
MGI:6162390
NCBI chr 8:119,785,726...119,799,431
Ensembl chr 8:119,782,595...119,800,014
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Fcgr2a
Fc gamma receptor 2A
IMP
RGD
PMID:22184119
RGD:11041001
NCBI chr13:83,280,782...83,297,535
Ensembl chr13:83,280,784...83,295,967
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Foxp1
forkhead box P1
involved_in
ISO
(PMID:18799727)
RGD
PMID:18799727
NCBI chr 4:131,559,599...132,155,092
Ensembl chr 4:131,564,756...132,112,258
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Kcnn4
potassium calcium-activated channel subfamily N member 4
IMP
RGD
PMID:25715999
RGD:401794570
NCBI chr 1:79,956,380...79,974,354
Ensembl chr 1:79,959,322...79,974,340
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Ltf
lactotransferrin
involved_in
ISO
(PMID:20345905)
RGD
PMID:20345905
NCBI chr 8:110,999,948...111,022,795
Ensembl chr 8:110,999,948...111,022,795
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Mapkapk2
MAPK activated protein kinase 2
involved_in
ISO
(PMID:15014438) (MGI:1352048|PMID:10559880)
RGD
PMID:10559880 PMID:15014438
MGI:1352048
NCBI chr13:42,513,762...42,560,061
Ensembl chr13:42,513,762...42,560,457
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Mir361
microRNA 361
involved_in
ISO
(PMID:28444107)
RGD
PMID:28444107
NCBI chr X:78,246,206...78,246,275
Ensembl chr X:78,246,206...78,246,275
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Myd88
MYD88, innate immune signal transduction adaptor
acts_upstream_of_or_within
ISO
MGI:4421295 (PMID:25084278)
RGD
PMID:25084278
NCBI chr 8:119,074,439...119,078,508
Ensembl chr 8:119,074,437...119,079,415
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Sirpa
signal-regulatory protein alpha
involved_in
IMP ISO
PMID:16055727 UniProtKB:Q08722 (PMID:11509594)
RGD
PMID:11509594 PMID:16055727
RGD:13792550
NCBI chr 3:116,819,730...116,858,099
Ensembl chr 3:116,819,726...116,858,098
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Tbc1d23
TBC1 domain family, member 23
acts_upstream_of_or_within
ISO
MGI:3857844 (PMID:22312129)
RGD
PMID:22312129
NCBI chr11:43,303,355...43,361,507
Ensembl chr11:43,303,355...43,361,503
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Tlr4
toll-like receptor 4
IMP
RGD
PMID:24199847
RGD:12910488
NCBI chr 5:80,145,867...80,159,501
Ensembl chr 5:80,145,826...80,159,628
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Tlr5
toll-like receptor 5
involved_in
IEA
GO_REF:0000117
UniProt
GO_REF:0000117
NCBI chr13:94,634,778...94,658,992
Ensembl chr13:94,634,801...94,657,738
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Tnfsf18
TNF superfamily member 18
NOT|involved_in
ISO
(MGI:5551556|PMID:24107315)
RGD
PMID:24107315
MGI:5551556
NCBI chr13:73,833,478...73,907,249
Ensembl chr13:73,831,252...73,843,169
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Trex1
three prime repair exonuclease 1
acts_upstream_of_or_within
ISO
MGI:3052754 (PMID:24218451)
RGD
PMID:24218451
NCBI chr 8:109,706,613...109,707,913
Ensembl chr 8:109,706,613...109,708,796
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Ube2j1
ubiquitin-conjugating enzyme E2, J1
acts_upstream_of_or_within
ISO
MGI:109298 (PMID:24020373)
RGD
PMID:24020373
NCBI chr 5:47,422,476...47,441,476
Ensembl chr 5:47,422,587...47,441,461
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Zfp36
zinc finger protein 36
involved_in
ISS ISO
GO_REF:0000024 (PMID:15014438)
UniProt RGD
PMID:15014438
GO_REF:0000024
NCBI chr 1:83,669,084...83,671,564
Ensembl chr 1:83,669,084...83,671,564
Term paths to the root one shortest all shortest one longest all longest one shortest and longest all