Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources

ONTOLOGY REPORT - ANNOTATIONS

Term:phytosphingosine biosynthetic process
go back to main search page
Accession:GO:0071602 term browser browse the term
Definition:The chemical reactions and pathways resulting in the formation of phytosphingosine, (2S,3S,4R)-2-aminooctadecane-1,3,4-triol.
Synonyms:exact_synonym: phytosphingosine anabolism;   phytosphingosine biosynthesis;   phytosphingosine formation;   phytosphingosine synthesis


show annotations for term's descendants           Sort by:
phytosphingosine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acer3 alkaline ceramidase 3 involved_in ISO
IBA		 (PMID:11356846), (PMID:20068046)
GO_REF:0000033		 RGD
GO_Central		 PMID:11356846 PMID:20068046 GO_REF:0000033 NCBI chr 1:152,504,180...152,606,596
Ensembl chr 1:152,504,186...152,606,591 		JBrowse link
G ENSRNOG00000069695 involved_in IEA GO_REF:0000118 TreeGrafter GO_REF:0000118 Ensembl chr14:25,729,638...25,730,194 JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20292
    cellular process 18769
      cellular metabolic process 10279
        cellular biosynthetic process 8211
          cellular nitrogen compound biosynthetic process 555
            phytosphingosine biosynthetic process 2
Path 2
Term Annotations click to browse term
  biological_process 20292
    metabolic process 11720
      primary metabolic process 10271
        lipid metabolic process 1483
          cellular lipid metabolic process 1100
            membrane lipid metabolic process 211
              sphingolipid metabolic process 158
                sphingolipid biosynthetic process 103
                  sphingoid biosynthetic process 16
                    phytosphingosine biosynthetic process 2
paths to the root