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ONTOLOGY REPORT - ANNOTATIONS


Term:otic vesicle development
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Accession:GO:0071599 term browser browse the term
Definition:The process whose specific outcome is the progression of the otic vesicle over time, from its formation to the mature structure. The otic vesicle is a transient embryonic structure formed during development of the vertebrate inner ear.



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otic vesicle development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AHI1 Abelson helper integration site 1 involved_in ISS UniProt
UniProt
GO_REF:0000024 NCBI chr 1:28,566,279...28,760,471
Ensembl chr 1:28,566,266...28,760,468
JBrowse link
G COL2A1 collagen type II alpha 1 chain involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:9119111) Ensembl
Ensembl
UniProt
PMID:9119111 GO_REF:0000107 NCBI chr 5:78,350,131...78,380,893
Ensembl chr 5:78,350,220...78,380,924
JBrowse link
G EYA1 EYA transcriptional coactivator and phosphatase 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5319720|PMID:22513373) MGI
Ensembl
PMID:22513373 GO_REF:0000107 MGI:5319720 NCBI chr 4:63,970,939...64,328,107
Ensembl chr 4:63,970,511...64,328,105
JBrowse link
G GATA3 GATA binding protein 3 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:1928163|PMID:11135239) Ensembl
Ensembl
MGI
PMID:11135239 GO_REF:0000107 MGI:1928163 NCBI chr10:63,367,684...63,397,977
Ensembl chr10:63,367,660...63,388,859
JBrowse link
G GET1 guided entry of tail-anchored proteins factor 1 acts_upstream_of_or_within ISO (MGI:5817553|PMID:27458190) MGI PMID:27458190 MGI:5817553 NCBI chr13:202,962,652...202,978,390
Ensembl chr13:202,962,664...202,988,859
JBrowse link
G SIX1 SIX homeobox 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3702803|PMID:16916509)
(MGI:5319720|PMID:22513373)
Ensembl
Ensembl
MGI
PMID:16916509 PMID:22513373 GO_REF:0000107 MGI:3702803 MGI:5319720 NCBI chr 1:189,620,430...189,624,652
Ensembl chr 1:189,619,853...189,628,187
JBrowse link
G SOX9 SRY-box transcription factor 9 acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:9119111) UniProt
Ensembl
PMID:9119111 GO_REF:0000107 NCBI chr12:8,642,154...8,647,315
Ensembl chr12:8,642,158...8,647,315
JBrowse link
otic vesicle formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FGF10 fibroblast growth factor 10 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:2683889|PMID:14623822) Ensembl
Ensembl
MGI
PMID:14623822 GO_REF:0000107 MGI:2683889 NCBI chr16:28,695,465...28,779,953
Ensembl chr16:28,695,469...28,777,541
JBrowse link
G FGF3 fibroblast growth factor 3 acts_upstream_of_or_within ISO (MGI:3720541|PMID:17601531) MGI PMID:17601531 MGI:3720541 NCBI chr 2:3,489,208...3,496,532
Ensembl chr 2:3,489,208...3,496,532
JBrowse link
G FGF8 fibroblast growth factor 8 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3720541|PMID:17601531) Ensembl
Ensembl
MGI
PMID:17601531 GO_REF:0000107 MGI:3720541 NCBI chr14:112,808,215...112,814,225
Ensembl chr14:112,808,210...112,814,134
JBrowse link
G FGFR2 fibroblast growth factor receptor 2 acts_upstream_of_or_within
involved_in
ISO
ISS
(MGI:1197797|PMID:9435295) MGI
UniProt
PMID:9435295 GO_REF:0000024 MGI:1197797 NCBI chr14:131,183,095...131,285,001
Ensembl chr14:131,181,710...131,579,703
JBrowse link
G HESX1 HESX homeobox 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:1206234|PMID:9620767) Ensembl
Ensembl
MGI
PMID:9620767 GO_REF:0000107 MGI:1206234 NCBI chr13:39,046,961...39,088,926
Ensembl chr13:39,046,465...39,088,875
JBrowse link
G SOX9 SRY-box transcription factor 9 involved_in
acts_upstream_of_or_within
IEA
ISO
ISS
(MGI:3795349|PMID:18377888) Ensembl
MGI
UniProt
Ensembl
UniProt
PMID:18377888 GO_REF:0000024 GO_REF:0000107 MGI:3795349 NCBI chr12:8,642,154...8,647,315
Ensembl chr12:8,642,158...8,647,315
JBrowse link
G TCAP titin-cap acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:9817758) BHF-UCL
Ensembl
PMID:9817758 GO_REF:0000107 NCBI chr12:22,651,666...22,652,904
Ensembl chr12:22,651,666...22,653,453
JBrowse link
otic vesicle morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G EYA1 EYA transcriptional coactivator and phosphatase 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3702803|PMID:16916509) Ensembl
Ensembl
MGI
PMID:16916509 GO_REF:0000107 MGI:3702803 NCBI chr 4:63,970,939...64,328,107
Ensembl chr 4:63,970,511...64,328,105
JBrowse link
G TBX1 T-box transcription factor 1 acts_upstream_of_or_within ISO (MGI:3703494|PMID:17074316) MGI PMID:17074316 MGI:3703494 NCBI chr14:51,289,376...51,297,110
Ensembl chr14:51,289,143...51,296,725
JBrowse link
positive regulation of otic vesicle morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G STOX1 storkhead box 1 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr14:71,927,387...71,985,239
Ensembl chr14:71,928,399...71,985,233
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 17268
    developmental process 6613
      anatomical structure development 6166
        tube development 1278
          otic vesicle development 15
            otic vesicle morphogenesis + 10
Path 2
Term Annotations click to browse term
  biological_process 17268
    developmental process 6613
      anatomical structure development 6166
        animal organ development 4039
          sensory organ development 707
            ear development 272
              inner ear development 242
                otic vesicle development 15
                  otic vesicle morphogenesis + 10
paths to the root