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ONTOLOGY REPORT - ANNOTATIONS


Term:otic vesicle development
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Accession:GO:0071599 term browser browse the term
Definition:The process whose specific outcome is the progression of the otic vesicle over time, from its formation to the mature structure. The otic vesicle is a transient embryonic structure formed during development of the vertebrate inner ear.



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otic vesicle development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AHI1 Abelson helper integration site 1 involved_in ISS UniProt
UniProt
GO_REF:0000024 NCBI chr 6:135,283,532...135,497,740
Ensembl chr 6:135,283,407...135,498,434
JBrowse link
G COL2A1 collagen type II alpha 1 chain involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:9119111) Ensembl
Ensembl
UniProt
PMID:9119111 GO_REF:0000107 NCBI chr12:47,972,967...48,006,212
Ensembl chr12:47,972,967...48,004,554
JBrowse link
G EYA1 EYA transcriptional coactivator and phosphatase 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5319720|PMID:22513373) MGI
Ensembl
PMID:22513373 GO_REF:0000107 MGI:5319720 NCBI chr 8:71,197,433...71,548,094
Ensembl chr 8:71,197,433...71,592,025
JBrowse link
G GATA3 GATA binding protein 3 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:1928163|PMID:11135239) Ensembl
Ensembl
MGI
PMID:11135239 GO_REF:0000107 MGI:1928163 NCBI chr10:8,045,333...8,075,198
Ensembl chr10:8,045,378...8,075,198
JBrowse link
G GET1 guided entry of tail-anchored proteins factor 1 acts_upstream_of_or_within ISO (MGI:5817553|PMID:27458190) MGI PMID:27458190 MGI:5817553 NCBI chr21:39,380,326...39,428,528
Ensembl chr21:39,377,698...39,428,528
JBrowse link
G PAX8 paired box 8 involved_in IEP (PMID:15494458) UniProt
UniProt
PMID:15494458 NCBI chr 2:113,215,997...113,278,921
Ensembl chr 2:113,215,997...113,278,921
JBrowse link
G SIX1 SIX homeobox 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3702803|PMID:16916509)
(MGI:5319720|PMID:22513373)
Ensembl
Ensembl
MGI
PMID:16916509 PMID:22513373 GO_REF:0000107 MGI:3702803 MGI:5319720 NCBI chr14:60,643,421...60,649,477
Ensembl chr14:60,643,421...60,658,259
JBrowse link
G SOX9 SRY-box transcription factor 9 acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:9119111) UniProt
Ensembl
PMID:9119111 GO_REF:0000107 NCBI chr17:72,121,020...72,126,416
Ensembl chr17:72,121,020...72,126,416
JBrowse link
otic placode formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PROX1 prospero homeobox 1 involved_in ISS (PMID:11789987) BHF-UCL
BHF-UCL
PMID:11789987 NCBI chr 1:213,983,151...214,041,510
Ensembl chr 1:213,983,181...214,041,510
JBrowse link
otic vesicle formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CEP290 centrosomal protein 290 involved_in ISS (PMID:16682973) HGNC-UCL
HGNC-UCL
PMID:16682973 NCBI chr12:88,049,016...88,142,088
Ensembl chr12:88,049,016...88,142,099
JBrowse link
G FGF10 fibroblast growth factor 10 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:2683889|PMID:14623822) Ensembl
Ensembl
MGI
PMID:14623822 GO_REF:0000107 MGI:2683889 NCBI chr 5:44,300,247...44,389,420
Ensembl chr 5:44,300,247...44,389,706
JBrowse link
G FGF3 fibroblast growth factor 3 acts_upstream_of_or_within ISO (MGI:3720541|PMID:17601531) MGI PMID:17601531 MGI:3720541 NCBI chr11:69,809,968...69,819,416
Ensembl chr11:69,809,968...69,819,416
JBrowse link
G FGF8 fibroblast growth factor 8 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3720541|PMID:17601531) Ensembl
Ensembl
MGI
PMID:17601531 GO_REF:0000107 MGI:3720541 NCBI chr10:101,770,109...101,780,369
Ensembl chr10:101,770,109...101,780,371
JBrowse link
G FGFR2 fibroblast growth factor receptor 2 involved_in
acts_upstream_of_or_within
ISS
ISO
(MGI:1197797|PMID:9435295) UniProt
UniProt
MGI
PMID:9435295 GO_REF:0000024 MGI:1197797 NCBI chr10:121,478,330...121,598,458
Ensembl chr10:121,478,332...121,598,458
JBrowse link
G HESX1 HESX homeobox 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:1206234|PMID:9620767) Ensembl
Ensembl
MGI
PMID:9620767 GO_REF:0000107 MGI:1206234 NCBI chr 3:57,197,838...57,227,615
Ensembl chr 3:57,197,838...57,227,606
JBrowse link
G SOX9 SRY-box transcription factor 9 involved_in
acts_upstream_of_or_within
ISS
ISO
IEA
(MGI:3795349|PMID:18377888) UniProt
MGI
Ensembl
UniProt
PMID:18377888 GO_REF:0000024 GO_REF:0000107 MGI:3795349 NCBI chr17:72,121,020...72,126,416
Ensembl chr17:72,121,020...72,126,416
JBrowse link
G TCAP titin-cap involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:9817758) Ensembl
Ensembl
BHF-UCL
PMID:9817758 GO_REF:0000107 NCBI chr17:39,665,349...39,666,554
Ensembl chr17:39,665,349...39,666,554
JBrowse link
otic vesicle morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G EYA1 EYA transcriptional coactivator and phosphatase 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3702803|PMID:16916509) Ensembl
Ensembl
MGI
PMID:16916509 GO_REF:0000107 MGI:3702803 NCBI chr 8:71,197,433...71,548,094
Ensembl chr 8:71,197,433...71,592,025
JBrowse link
G TBX1 T-box transcription factor 1 acts_upstream_of_or_within ISO (MGI:3703494|PMID:17074316) MGI PMID:17074316 MGI:3703494 NCBI chr22:19,756,703...19,783,593
Ensembl chr22:19,756,703...19,783,593
JBrowse link
positive regulation of otic vesicle morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G STOX1 storkhead box 1 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr10:68,827,531...68,895,432
Ensembl chr10:68,827,531...68,895,432
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19656
    developmental process 7517
      anatomical structure development 6877
        tube development 1394
          otic vesicle development 18
            otic vesicle morphogenesis + 12
Path 2
Term Annotations click to browse term
  biological_process 19656
    developmental process 7517
      anatomical structure development 6877
        animal organ development 4448
          sensory organ development 731
            ear development 280
              inner ear development 249
                otic vesicle development 18
                  otic vesicle morphogenesis + 12
paths to the root