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ONTOLOGY REPORT - ANNOTATIONS


Term:otic vesicle development
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Accession:GO:0071599 term browser browse the term
Definition:The process whose specific outcome is the progression of the otic vesicle over time, from its formation to the mature structure. The otic vesicle is a transient embryonic structure formed during development of the vertebrate inner ear.



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otic vesicle development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AHI1 Abelson helper integration site 1 involved_in ISS UniProt GO_REF:0000024 NCBI chr 1:27,966,101...28,199,163
Ensembl chr 1:27,998,874...28,198,351
JBrowse link
G COL2A1 collagen type II alpha 1 chain acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:9119111) UniProt
Ensembl
PMID:9119111 GO_REF:0000107 NCBI chr27:6,756,994...6,787,733
Ensembl chr27:6,756,994...6,787,733
JBrowse link
G EYA1 EYA transcriptional coactivator and phosphatase 1 acts_upstream_of_or_within ISO (MGI:5319720|PMID:22513373) MGI PMID:22513373 MGI:5319720 NCBI chr29:20,176,306...20,595,131
Ensembl chr29:20,177,014...20,525,653
JBrowse link
G GATA3 GATA binding protein 3 acts_upstream_of_or_within ISO (MGI:1928163|PMID:11135239) MGI PMID:11135239 MGI:1928163 NCBI chr 2:28,068,143...28,098,445
Ensembl chr 2:28,069,051...28,087,760
JBrowse link
G GET1 guided entry of tail-anchored proteins factor 1 acts_upstream_of_or_within ISO (MGI:5817553|PMID:27458190) MGI PMID:27458190 MGI:5817553 NCBI chr31:34,282,650...34,299,916 JBrowse link
G PAX8 paired box 8 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr17:37,307,130...37,331,729
Ensembl chr17:37,306,033...37,363,178
JBrowse link
G SIX1 SIX homeobox 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3702803|PMID:16916509)
(MGI:5319720|PMID:22513373)
Ensembl
Ensembl
MGI
PMID:16916509 PMID:22513373 GO_REF:0000107 MGI:3702803 MGI:5319720 NCBI chr 8:35,676,705...35,679,534
Ensembl chr 8:35,676,479...35,679,534
JBrowse link
G SOX9 SRY-box transcription factor 9 acts_upstream_of_or_within ISO (PMID:9119111) UniProt PMID:9119111 NCBI chr 9:8,275,049...8,278,172
Ensembl chr 9:8,275,049...8,278,172
JBrowse link
otic vesicle formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FGF10 fibroblast growth factor 10 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:2683889|PMID:14623822) Ensembl
Ensembl
MGI
PMID:14623822 GO_REF:0000107 MGI:2683889 NCBI chr 4:65,851,130...65,930,944
Ensembl chr 4:65,851,069...65,928,192
JBrowse link
G FGF3 fibroblast growth factor 3 acts_upstream_of_or_within ISO (MGI:3720541|PMID:17601531) MGI PMID:17601531 MGI:3720541 NCBI chr18:48,382,819...48,388,453
Ensembl chr18:48,383,222...48,389,009
JBrowse link
G FGF8 fibroblast growth factor 8 acts_upstream_of_or_within ISO (MGI:3720541|PMID:17601531) MGI PMID:17601531 MGI:3720541 NCBI chr28:14,362,407...14,367,109
Ensembl chr28:14,362,109...14,367,468
JBrowse link
G FGFR2 fibroblast growth factor receptor 2 acts_upstream_of_or_within
involved_in
ISO
ISS
(MGI:1197797|PMID:9435295) MGI
UniProt
PMID:9435295 GO_REF:0000024 MGI:1197797 NCBI chr28:31,303,882...31,411,015
Ensembl chr28:31,303,894...31,411,621
JBrowse link
G HESX1 HESX homeobox 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:1206234|PMID:9620767) MGI
Ensembl
PMID:9620767 GO_REF:0000107 MGI:1206234 NCBI chr20:33,193,813...33,197,226
Ensembl chr20:33,195,123...33,196,601
JBrowse link
G SOX9 SRY-box transcription factor 9 involved_in
acts_upstream_of_or_within
ISS
ISO
(MGI:3795349|PMID:18377888) UniProt
MGI
UniProt
PMID:18377888 GO_REF:0000024 MGI:3795349 NCBI chr 9:8,275,049...8,278,172
Ensembl chr 9:8,275,049...8,278,172
JBrowse link
G TCAP titin-cap involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:9817758) Ensembl
Ensembl
BHF-UCL
PMID:9817758 GO_REF:0000107 NCBI chr 9:22,811,792...22,812,980
Ensembl chr 9:22,794,177...22,813,012
JBrowse link
otic vesicle morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G EYA1 EYA transcriptional coactivator and phosphatase 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3702803|PMID:16916509) Ensembl
MGI
PMID:16916509 GO_REF:0000107 MGI:3702803 NCBI chr29:20,176,306...20,595,131
Ensembl chr29:20,177,014...20,525,653
JBrowse link
G TBX1 T-box transcription factor 1 acts_upstream_of_or_within ISO (MGI:3703494|PMID:17074316) MGI PMID:17074316 MGI:3703494 NCBI chr26:29,529,071...29,533,240
Ensembl chr26:29,528,878...29,532,784
JBrowse link
positive regulation of otic vesicle morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G STOX1 storkhead box 1 involved_in ISO (MGI:5635320|PMID:25677106) UniProt PMID:25677106 MGI:5635320 NCBI chr 4:20,013,893...20,065,480
Ensembl chr 4:20,014,007...20,060,394
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 16445
    developmental process 6561
      anatomical structure development 6134
        tube development 1287
          otic vesicle development 16
            otic vesicle morphogenesis + 10
Path 2
Term Annotations click to browse term
  biological_process 16445
    developmental process 6561
      anatomical structure development 6134
        animal organ development 4020
          sensory organ development 709
            ear development 274
              inner ear development 244
                otic vesicle development 16
                  otic vesicle morphogenesis + 10
paths to the root