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ONTOLOGY REPORT - ANNOTATIONS

Term:npBAF complex
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Accession:GO:0071564 term browser browse the term
Definition:A SWI/SNF-type complex that is found in neural stem or progenitor cells, and in human contains actin and proteins encoded by the ARID1A/BAF250A or ARID1B/BAF250B, SMARCD1/BAF60A, SMARCD3/BAF60C, SMARCA2/BRM/BAF190B, SMARCA4/BRG1/BAF190A, SMARCB1/BAF47, SMARCC1/BAF155, SMARCE1/BAF57, SMARCC2/BAF170, PHF10/BAF45A, ACTL6A/BAF53A genes. The npBAF complex is essential for the self-renewal/proliferative capacity of the multipotent neural stem cells.


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npBAF complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Actl6a actin-like 6A part_of ISO (PMID:18816825)
(MGI:3775125|PMID:17640523), (PMID:23785148)		 RGD PMID:17640523 PMID:18816825 PMID:23785148 MGI:3775125 NCBI chr 2:115,492,374...115,508,401
Ensembl chr 2:115,492,285...115,508,401 		JBrowse link
G Arid1a AT-rich interaction domain 1A part_of ISO (MGI:3775125|PMID:17640523) RGD PMID:17640523 MGI:3775125 NCBI chr 5:145,908,173...145,981,552
Ensembl chr 5:145,908,181...145,985,564 		JBrowse link
G Phf10 PHD finger protein 10 part_of IEA
ISS
ISO		 GO_REF:0000002
GO_REF:0000024
(MGI:3775125|PMID:17640523)		 InterPro
UniProt
RGD		 PMID:17640523 GO_REF:0000002 GO_REF:0000024 MGI:3775125 NCBI chr 1:55,952,249...55,968,994
Ensembl chr 1:55,952,253...55,969,038 		JBrowse link
G Smarca2 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 part_of ISO (MGI:3775125|PMID:17640523), (PMID:23785148) RGD PMID:17640523 PMID:23785148 MGI:3775125 NCBI chr 1:224,191,125...224,358,640
Ensembl chr 1:224,191,125...224,358,684 		JBrowse link
G Smarca4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 part_of ISS
ISO
IEA		 GO_REF:0000024
(PMID:18816825)
GO_REF:0000107
(MGI:3775125|PMID:17640523), (PMID:23785148)		 UniProt
RGD
Ensembl		 PMID:17640523 PMID:18816825 PMID:23785148 GO_REF:0000024 GO_REF:0000107 MGI:3775125 NCBI chr 8:20,167,717...20,258,975
Ensembl chr 8:20,167,717...20,258,975 		JBrowse link
G Smarcb1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1 part_of ISO
IBA		 (MGI:3775125|PMID:17640523)
GO_REF:0000033		 RGD
GO_Central		 PMID:17640523 GO_REF:0000033 MGI:3775125 NCBI chr20:12,741,164...12,763,616
Ensembl chr20:12,741,477...12,763,620 		JBrowse link
G Smarcc1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1 part_of IBA
ISO		 GO_REF:0000033
(MGI:3775125|PMID:17640523), (PMID:23785148)		 GO_Central
RGD		 PMID:17640523 PMID:23785148 GO_REF:0000033 MGI:3775125 NCBI chr 8:110,111,097...110,214,734
Ensembl chr 8:110,111,122...110,214,720 		JBrowse link
G Smarcc2 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2 part_of IBA
ISO		 GO_REF:0000033
(MGI:3775125|PMID:17640523), (PMID:23785148)		 GO_Central
RGD		 PMID:17640523 PMID:23785148 GO_REF:0000033 MGI:3775125 NCBI chr 7:881,844...910,090
Ensembl chr 7:881,421...909,978 		JBrowse link
G Smarcd1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1 part_of ISO (MGI:3775125|PMID:17640523) RGD PMID:17640523 MGI:3775125 NCBI chr 7:130,829,783...130,840,323
Ensembl chr 7:130,829,768...130,840,323 		JBrowse link
G Smarcd3 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3 part_of ISO (PMID:18816825)
(MGI:3775125|PMID:17640523), (PMID:23785148)		 RGD PMID:17640523 PMID:18816825 PMID:23785148 MGI:3775125 NCBI chr 4:10,548,693...10,580,334
Ensembl chr 4:10,548,751...10,580,326 		JBrowse link
G Smarce1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 part_of ISO (MGI:3775125|PMID:17640523) RGD PMID:17640523 MGI:3775125 NCBI chr10:84,159,270...84,180,547
Ensembl chr10:84,159,275...84,179,989 		JBrowse link
G Ss18 SS18 subunit of BAF chromatin remodeling complex part_of ISO (PMID:23785148) RGD PMID:23785148 NCBI chr18:5,773,042...5,835,696
Ensembl chr18:5,773,042...5,835,333 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 21254
    protein-containing complex 6911
      nuclear protein-containing complex 1373
        SWI/SNF superfamily-type complex 102
          npBAF complex 12
Path 2
Term Annotations click to browse term
  cellular_component 21254
    cellular anatomical entity 21098
      organelle 14217
        non-membrane-bounded organelle 5314
          intracellular non-membrane-bounded organelle 5312
            chromosome 1387
              chromatin 818
                SWI/SNF superfamily-type complex 102
                  npBAF complex 12
paths to the root