ONTOLOGY REPORT - ANNOTATIONS
Term: npBAF complex
Accession: GO:0071564
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Definition: A SWI/SNF-type complex that is found in neural stem or progenitor cells, and in human contains actin and proteins encoded by the ARID1A/BAF250A or ARID1B/BAF250B, SMARCD1/BAF60A, SMARCD3/BAF60C, SMARCA2/BRM/BAF190B, SMARCA4/BRG1/BAF190A, SMARCB1/BAF47, SMARCC1/BAF155, SMARCE1/BAF57, SMARCC2/BAF170, PHF10/BAF45A, ACTL6A/BAF53A genes. The npBAF complex is essential for the self-renewal/proliferative capacity of the multipotent neural stem cells.
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Actl6a
actin-like 6A
part_of
ISO
(PMID:18816825) (MGI:3775125|PMID:17640523), (PMID:23785148)
RGD
PMID:17640523 PMID:18816825 PMID:23785148
MGI:3775125
NCBI chr 2:115,492,374...115,508,401
Ensembl chr 2:115,492,285...115,508,401
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Arid1a
AT-rich interaction domain 1A
part_of
ISO
(MGI:3775125|PMID:17640523)
RGD
PMID:17640523
MGI:3775125
NCBI chr 5:145,908,173...145,981,552
Ensembl chr 5:145,908,181...145,985,564
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Phf10
PHD finger protein 10
part_of
IEA ISS ISO
GO_REF:0000002 GO_REF:0000024 (MGI:3775125|PMID:17640523)
InterPro UniProt RGD
PMID:17640523
GO_REF:0000002 GO_REF:0000024 MGI:3775125
NCBI chr 1:55,952,249...55,968,994
Ensembl chr 1:55,952,253...55,969,038
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Smarca2
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2
part_of
ISO
(MGI:3775125|PMID:17640523), (PMID:23785148)
RGD
PMID:17640523 PMID:23785148
MGI:3775125
NCBI chr 1:224,191,125...224,358,640
Ensembl chr 1:224,191,125...224,358,684
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Smarca4
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4
part_of
ISS ISO IEA
GO_REF:0000024 (PMID:18816825) GO_REF:0000107 (MGI:3775125|PMID:17640523), (PMID:23785148)
UniProt RGD Ensembl
PMID:17640523 PMID:18816825 PMID:23785148
GO_REF:0000024 GO_REF:0000107 MGI:3775125
NCBI chr 8:20,167,717...20,258,975
Ensembl chr 8:20,167,717...20,258,975
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Smarcb1
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1
part_of
ISO IBA
(MGI:3775125|PMID:17640523) GO_REF:0000033
RGD GO_Central
PMID:17640523
GO_REF:0000033 MGI:3775125
NCBI chr20:12,741,164...12,763,616
Ensembl chr20:12,741,477...12,763,620
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Smarcc1
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1
part_of
IBA ISO
GO_REF:0000033 (MGI:3775125|PMID:17640523), (PMID:23785148)
GO_Central RGD
PMID:17640523 PMID:23785148
GO_REF:0000033 MGI:3775125
NCBI chr 8:110,111,097...110,214,734
Ensembl chr 8:110,111,122...110,214,720
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Smarcc2
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2
part_of
IBA ISO
GO_REF:0000033 (MGI:3775125|PMID:17640523), (PMID:23785148)
GO_Central RGD
PMID:17640523 PMID:23785148
GO_REF:0000033 MGI:3775125
NCBI chr 7:881,844...910,090
Ensembl chr 7:881,421...909,978
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Smarcd1
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1
part_of
ISO
(MGI:3775125|PMID:17640523)
RGD
PMID:17640523
MGI:3775125
NCBI chr 7:130,829,783...130,840,323
Ensembl chr 7:130,829,768...130,840,323
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Smarcd3
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3
part_of
ISO
(PMID:18816825) (MGI:3775125|PMID:17640523), (PMID:23785148)
RGD
PMID:17640523 PMID:18816825 PMID:23785148
MGI:3775125
NCBI chr 4:10,548,693...10,580,334
Ensembl chr 4:10,548,751...10,580,326
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Smarce1
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1
part_of
ISO
(MGI:3775125|PMID:17640523)
RGD
PMID:17640523
MGI:3775125
NCBI chr10:84,159,270...84,180,547
Ensembl chr10:84,159,275...84,179,989
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Ss18
SS18 subunit of BAF chromatin remodeling complex
part_of
ISO
(PMID:23785148)
RGD
PMID:23785148
NCBI chr18:5,773,042...5,835,696
Ensembl chr18:5,773,042...5,835,333
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