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ONTOLOGY REPORT - ANNOTATIONS

Term:genomic imprinting
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Accession:GO:0071514 term browser browse the term
Definition:The establishment of epigenetic modifications (imprints) during gametogenesis, and propagation of these imprints during the organism's life. Genomic imprinting leads to an asymmetry between the maternal and paternal alleles and differential expression of the corresponding alleles. This can happen through heterochromatin formation or differential chromatin loop formation.
Synonyms:exact_synonym: DNA imprinting;   establishment of genomic imprinting;   genetic imprinting
 xref: Wikipedia:Genomic_imprinting

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genomic imprinting term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arid4a AT-rich interaction domain 4A acts_upstream_of_or_within ISO (PMID:17043311) MGI PMID:17043311 NCBI chrNW_004955466:12,017,588...12,087,667 JBrowse link
G Arid4b AT-rich interaction domain 4B acts_upstream_of_or_within ISO (PMID:17043311) MGI PMID:17043311 NCBI chrNW_004955492:4,593,335...4,730,073
Ensembl chrNW_004955492:4,593,335...4,730,073 		JBrowse link
G Cdkn1c cyclin dependent kinase inhibitor 1C acts_upstream_of_or_within ISO (PMID:19276117) MGI PMID:19276117 NCBI chrNW_004955422:14,576,971...14,578,868 JBrowse link
G Ctcf CCCTC-binding factor involved_in
acts_upstream_of_or_within		 ISO (PMID:17827499)
(PMID:12461525), (PMID:15143173)
(PMID:14716017)		 GO_Central
MGI		 PMID:12461525 PMID:14716017 PMID:15143173 PMID:17827499 NCBI chrNW_004955484:9,041,226...9,092,924
Ensembl chrNW_004955484:9,042,524...9,064,927 		JBrowse link
G Ctcfl CCCTC-binding factor like involved_in ISO (MGI:3692841|PMID:17048991) UniProt PMID:17048991 MGI:3692841 NCBI chrNW_004955445:1,944,845...1,969,502
Ensembl chrNW_004955445:1,944,789...1,970,484 		JBrowse link
G Dnmt3a DNA methyltransferase 3 alpha acts_upstream_of_or_within ISO (PMID:15215868) MGI PMID:15215868 NCBI chrNW_004955469:7,264,431...7,367,059
Ensembl chrNW_004955469:7,269,952...7,367,059 		JBrowse link
G Dnmt3l DNA methyltransferase 3 like involved_in
acts_upstream_of_or_within		 ISO (MGI:3054275|PMID:15318244)
(PMID:22723905)		 UniProt
MGI		 PMID:15318244 PMID:22723905 MGI:3054275 NCBI chrNW_004955407:41,177,582...41,186,965
Ensembl chrNW_004955407:41,177,582...41,186,965 		JBrowse link
G Eed embryonic ectoderm development acts_upstream_of_or_within ISO (PMID:12627233) MGI PMID:12627233 NCBI chrNW_004955414:6,659,144...6,685,530
Ensembl chrNW_004955414:6,659,055...6,685,530 		JBrowse link
G Kdm1b lysine demethylase 1B acts_upstream_of_or_within ISO (PMID:19727073) MGI PMID:19727073 NCBI chrNW_004955483:8,000,862...8,052,486
Ensembl chrNW_004955483:8,002,577...8,052,486 		JBrowse link
G Mecp2 methyl-CpG binding protein 2 acts_upstream_of_or_within ISO (PMID:15608638) MGI PMID:15608638 NCBI chrNW_004955580:674,014...737,586
Ensembl chrNW_004955580:679,109...735,288 		JBrowse link
G Mta2 metastasis associated 1 family member 2 acts_upstream_of_or_within ISO (PMID:20720167) MGI PMID:20720167 NCBI chrNW_004955599:587,369...595,582
Ensembl chrNW_004955599:587,425...595,060 		JBrowse link
G Ndn necdin, MAGE family member acts_upstream_of_or_within ISO (PMID:10508517) MGI PMID:10508517 NCBI chrNW_004955416:31,125,354...31,127,010
Ensembl chrNW_004955416:31,125,924...31,126,889 		JBrowse link
G Prmt7 protein arginine methyltransferase 7 involved_in ISO (MGI:3692841|PMID:17048991) UniProt PMID:17048991 MGI:3692841 NCBI chrNW_004955484:8,299,427...8,352,465
Ensembl chrNW_004955484:8,299,427...8,340,287 		JBrowse link
G Trim28 tripartite motif containing 28 acts_upstream_of_or_within ISO (PMID:22442485) MGI PMID:22442485 NCBI chrNW_004955584:1,148,903...1,156,001 JBrowse link
G Zdbf2 zinc finger DBF-type containing 2 acts_upstream_of_or_within ISO (PMID:27841881) MGI PMID:27841881 NCBI chrNW_004955457:8,660,448...8,688,116 JBrowse link
G Zfp42 ZFP42 zinc finger protein acts_upstream_of_or_within ISO (PMID:21233130) MGI PMID:21233130 NCBI chrNW_004955403:21,222,129...21,227,341
Ensembl chrNW_004955403:21,222,138...21,227,341 		JBrowse link
G Zfp57 ZFP57 zinc finger protein acts_upstream_of_or_within ISO (PMID:33500348) MGI PMID:33500348 NCBI chrNW_004955583:151,338...154,827 JBrowse link
autosome genomic imprinting term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dnmt3a DNA methyltransferase 3 alpha involved_in
acts_upstream_of_or_within		 ISO (MGI:5009774|PMID:21047779)
(PMID:11934864)		 BHF-UCL
MGI		 PMID:11934864 PMID:21047779 MGI:5009774 NCBI chrNW_004955469:7,264,431...7,367,059
Ensembl chrNW_004955469:7,269,952...7,367,059 		JBrowse link
G Dnmt3b DNA methyltransferase 3 beta acts_upstream_of_or_within ISO (PMID:11934864) MGI PMID:11934864 NCBI chrNW_004955422:28,380,595...28,427,012
Ensembl chrNW_004955422:28,380,591...28,421,301 		JBrowse link
G Dnmt3l DNA methyltransferase 3 like acts_upstream_of_or_within ISO (PMID:11934864) MGI PMID:11934864 NCBI chrNW_004955407:41,177,582...41,186,965
Ensembl chrNW_004955407:41,177,582...41,186,965 		JBrowse link
G Gsk3a glycogen synthase kinase 3 alpha acts_upstream_of_positive_effect ISO (MGI:5009774|PMID:21047779) BHF-UCL PMID:21047779 MGI:5009774 NCBI chrNW_004955555:668,641...676,351
Ensembl chrNW_004955555:667,973...676,351 		JBrowse link
G Gsk3b glycogen synthase kinase 3 beta acts_upstream_of_positive_effect ISO (MGI:5009774|PMID:21047779) BHF-UCL PMID:21047779 MGI:5009774 NCBI chrNW_004955427:19,489,972...19,671,137
Ensembl chrNW_004955427:19,495,422...19,671,137 		JBrowse link
G Mycn MYCN proto-oncogene, bHLH transcription factor acts_upstream_of_positive_effect ISO (MGI:5009774|PMID:21047779) BHF-UCL PMID:21047779 MGI:5009774 NCBI chrNW_004955487:9,219,528...9,224,818
Ensembl chrNW_004955487:9,219,528...9,224,818 		JBrowse link
G Pik3ca phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha acts_upstream_of_negative_effect ISO (MGI:5009774|PMID:21047779) BHF-UCL PMID:21047779 MGI:5009774 NCBI chrNW_004955420:8,355,415...8,427,024
Ensembl chrNW_004955420:8,356,353...8,427,024 		JBrowse link
G Zfp57 ZFP57 zinc finger protein involved_in
acts_upstream_of_or_within		 ISO (PMID:18622393)
(PMID:33500348)
(MGI:3826319|PMID:18854139)		 UniProt
MGI		 PMID:18622393 PMID:18854139 PMID:33500348 MGI:3826319 NCBI chrNW_004955583:151,338...154,827 JBrowse link
inactivation of paternal X chromosome by genomic imprinting term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Prdm14 PR/SET domain 14 acts_upstream_of_or_within ISO (PMID:24268575) MGI PMID:24268575 NCBI chrNW_004955444:9,606,310...9,626,772
Ensembl chrNW_004955444:9,612,059...9,626,817 		JBrowse link
G Smchd1 structural maintenance of chromosomes flexible hinge domain containing 1 acts_upstream_of_or_within ISO (PMID:18425126), (PMID:23754746) MGI PMID:18425126 PMID:23754746 NCBI chrNW_004955402:7,544,265...7,661,191
Ensembl chrNW_004955402:7,544,265...7,649,067 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 12346
    reproductive process 1482
      developmental process involved in reproduction 1034
        germ cell development 381
          genomic imprinting 24
            autosome genomic imprinting 8
            epigenetic programming in the central cell 0
            inactivation of paternal X chromosome by genomic imprinting 2
Path 2
Term Annotations click to browse term
  biological_process 12346
    biological regulation 8880
      regulation of biological process 8618
        regulation of cellular process 8169
          regulation of cellular metabolic process 4272
            regulation of cellular biosynthetic process 3728
              regulation of macromolecule biosynthetic process 3635
                regulation of gene expression 3524
                  epigenetic regulation of gene expression 198
                    epigenetic programming of gene expression 37
                      genomic imprinting 24
                        autosome genomic imprinting 8
                        epigenetic programming in the central cell 0
                        inactivation of paternal X chromosome by genomic imprinting 2
paths to the root