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ONTOLOGY REPORT - ANNOTATIONS


Term:genomic imprinting
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Accession:GO:0071514 term browser browse the term
Definition:The establishment of epigenetic modifications (imprints) during gametogenesis, and propagation of these imprints during the organism's life. Genomic imprinting leads to an asymmetry between the maternal and paternal alleles and differential expression of the corresponding alleles. This can happen through heterochromatin formation or differential chromatin loop formation.
Synonyms:exact_synonym: DNA imprinting;   establishment of genomic imprinting;   genetic imprinting
 xref: Wikipedia:Genomic_imprinting



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genomic imprinting term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arid4a AT-rich interaction domain 4A acts_upstream_of_or_within ISO MGI:2137512 (MGI:3686546|PMID:17043311) RGD PMID:17043311 MGI:3686546 NCBI chr 6:89,522,459...89,593,868
Ensembl chr 6:89,522,442...89,593,510
JBrowse link
G Arid4b AT-rich interaction domain 4B acts_upstream_of_or_within
involved_in
ISO
IEA
MGI:2444354 (MGI:3686546|PMID:17043311)
GO_REF:0000107
RGD
Ensembl
PMID:17043311 GO_REF:0000107 MGI:3686546 NCBI chr17:51,138,419...51,262,894
Ensembl chr17:51,138,535...51,262,906
JBrowse link
G Cdkn1c cyclin-dependent kinase inhibitor 1C acts_upstream_of_or_within ISO MGI:1933758|MGI:3840687 (MGI:3839493|PMID:19276117) RGD PMID:19276117 MGI:3839493 NCBI chr 1:198,655,394...198,658,097
Ensembl chr 1:198,655,407...198,658,048
JBrowse link
G Ctcf CCCTC-binding factor involved_in
acts_upstream_of_or_within
ISO
IEA
(PMID:17827499)
GO_REF:0000107
(MGI:2450195|PMID:12461525), (MGI:3044090|PMID:14716017), (MGI:3045676|PMID:15143173)
RGD
Ensembl
PMID:12461525 PMID:14716017 PMID:15143173 PMID:17827499 GO_REF:0000107 MGI:2450195 MGI:3044090 MGI:3045676 NCBI chr19:33,521,726...33,571,124
Ensembl chr19:33,529,319...33,571,123
JBrowse link
G Ctcfl1 CCCTC-binding factor like 1 involved_in ISO (MGI:3692841|PMID:17048991) RGD PMID:17048991 MGI:3692841 NCBI chr 3:161,868,306...161,890,949
Ensembl chr 3:161,868,306...161,890,949
JBrowse link
G Dnmt3a DNA methyltransferase 3 alpha acts_upstream_of_or_within ISO MGI:3047552|MGI:3047824 (MGI:3045942|PMID:15215868) RGD PMID:15215868 MGI:3045942 NCBI chr 6:26,791,517...26,902,161
Ensembl chr 6:26,822,609...26,896,687
JBrowse link
G Dnmt3l DNA methyltransferase 3 like involved_in ISS
ISO
GO_REF:0000024
(MGI:3054275|PMID:15318244)
UniProt
RGD
PMID:15318244 GO_REF:0000024 MGI:3054275 NCBI chr20:10,614,933...10,629,337
Ensembl chr20:10,614,934...10,629,516
JBrowse link
G Eed embryonic ectoderm development acts_upstream_of_or_within ISO MGI:1856856 (MGI:2655036|PMID:12627233) RGD PMID:12627233 MGI:2655036 NCBI chr 1:143,867,875...143,895,008
Ensembl chr 1:143,867,875...143,894,974
JBrowse link
G Gnas GNAS complex locus acts_upstream_of_or_within
involved_in
ISO
IEA
MGI:4459474 (MGI:4454202|PMID:20427744)
GO_REF:0000107
RGD
Ensembl
PMID:20427744 GO_REF:0000107 MGI:4454202 NCBI chr 3:163,071,003...163,136,350
Ensembl chr 3:163,071,417...163,127,262
Ensembl chr 3:163,071,417...163,127,262
JBrowse link
G H19 H19 imprinted maternally expressed transcript acts_upstream_of_or_within ISO (MGI:1096753|PMID:9294195) RGD PMID:9294195 MGI:1096753 NCBI chr 1:197,730,698...197,733,374
Ensembl chr 1:197,730,698...197,733,134
JBrowse link
G Kdm1b lysine demethylase 1B acts_upstream_of_or_within ISO MGI:4359289 (MGI:4358629|PMID:19727073) RGD PMID:19727073 MGI:4358629 NCBI chr17:17,602,961...17,643,865
Ensembl chr17:17,602,961...17,643,800
JBrowse link
G Mecp2 methyl CpG binding protein 2 acts_upstream_of_or_within ISO MGI:2137311 (MGI:3530434|PMID:15608638)
(PMID:15608638)
RGD PMID:15608638 MGI:3530434 NCBI chr  X:151,781,177...151,844,687
Ensembl chr  X:151,789,930...151,844,689
JBrowse link
G Meg3 maternally expressed 3 acts_upstream_of_or_within ISO (MGI:5465388|PMID:23195472) RGD PMID:23195472 MGI:5465388 NCBI chr 6:128,491,808...128,524,010 JBrowse link
G Mta2 metastasis associated 1 family, member 2 acts_upstream_of_or_within ISO (MGI:4888087|PMID:20720167) RGD PMID:20720167 MGI:4888087 NCBI chr 1:205,838,181...205,846,903
Ensembl chr 1:205,837,964...205,846,946
JBrowse link
G Ndn necdin, MAGE family member acts_upstream_of_or_within ISO MGI:2653045|MGI:2653048 (MGI:1345919|PMID:10508517) RGD PMID:10508517 MGI:1345919 NCBI chr 1:115,849,168...115,850,767
Ensembl chr 1:115,849,105...115,850,767
JBrowse link
G Prmt7 protein arginine methyltransferase 7 involved_in ISS
ISO
IEA
GO_REF:0000024
(MGI:3692841|PMID:17048991)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:17048991 GO_REF:0000024 GO_REF:0000107 MGI:3692841 NCBI chr19:34,110,724...34,161,531
Ensembl chr19:34,110,747...34,162,577
JBrowse link
G Trim28 tripartite motif-containing 28 acts_upstream_of_or_within ISO MGI:1928907 (MGI:5314261|PMID:22442485) RGD PMID:22442485 MGI:5314261 NCBI chr 1:73,652,441...73,659,388
Ensembl chr 1:73,652,709...73,659,380
JBrowse link
G Zdbf2 zinc finger, DBF-type containing 2 acts_upstream_of_or_within
involved_in
ISO
IBA
MGI:6161219 (MGI:6151717|PMID:27841881)
GO_REF:0000033
RGD
GO_Central
PMID:27841881 GO_REF:0000033 MGI:6151717 NCBI chr 9:64,672,974...64,748,446
Ensembl chr 9:64,709,880...64,744,265
JBrowse link
G Zfp42 zinc finger protein 42 acts_upstream_of_or_within ISO MGI:4125334 (MGI:4940138|PMID:21233130) RGD PMID:21233130 MGI:4940138 NCBI chr16:48,836,463...48,845,443
Ensembl chr16:48,836,648...48,845,401
JBrowse link
G Zfp57 zinc finger protein 57 acts_upstream_of_or_within ISO MGI:3826984 (MGI:6506156|PMID:33500348) RGD PMID:33500348 MGI:6506156 NCBI chr20:1,521,323...1,534,884
Ensembl chr20:1,521,323...1,529,846
JBrowse link
autosome genomic imprinting term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dnmt3a DNA methyltransferase 3 alpha acts_upstream_of_or_within
involved_in
ISO MGI:2182412 (MGI:2178074|PMID:11934864)
(MGI:5009774|PMID:21047779)
RGD PMID:11934864 PMID:21047779 MGI:2178074 MGI:5009774 NCBI chr 6:26,791,517...26,902,161
Ensembl chr 6:26,822,609...26,896,687
JBrowse link
G Dnmt3b DNA methyltransferase 3 beta acts_upstream_of_or_within ISO MGI:2182410|MGI:2182414 (MGI:2178074|PMID:11934864) RGD PMID:11934864 MGI:2178074 NCBI chr 3:142,130,588...142,169,128
Ensembl chr 3:142,130,592...142,169,124
JBrowse link
G Dnmt3l DNA methyltransferase 3 like acts_upstream_of_or_within
involved_in
ISO
IEA
MGI:2447127 (MGI:2178074|PMID:11934864)
GO_REF:0000107
RGD
Ensembl
PMID:11934864 GO_REF:0000107 MGI:2178074 NCBI chr20:10,614,933...10,629,337
Ensembl chr20:10,614,934...10,629,516
JBrowse link
G Gsk3a glycogen synthase kinase 3 alpha involved_in
acts_upstream_of_positive_effect
IEA
ISO
GO_REF:0000107
(MGI:5009774|PMID:21047779)
Ensembl
RGD
PMID:21047779 GO_REF:0000107 MGI:5009774 NCBI chr 1:80,815,843...80,825,732
Ensembl chr 1:80,815,850...80,825,802
JBrowse link
G Gsk3b glycogen synthase kinase 3 beta acts_upstream_of_positive_effect ISO (MGI:5009774|PMID:21047779) RGD PMID:21047779 MGI:5009774 NCBI chr11:62,498,997...62,648,665
Ensembl chr11:62,504,316...62,648,646
JBrowse link
G Mycn MYCN proto-oncogene, bHLH transcription factor involved_in
acts_upstream_of_positive_effect
IEA
ISO
GO_REF:0000107
(MGI:5009774|PMID:21047779)
Ensembl
RGD
PMID:21047779 GO_REF:0000107 MGI:5009774 NCBI chr 6:35,717,764...35,723,590
Ensembl chr 6:35,717,764...35,723,590
JBrowse link
G Pik3ca phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit alpha acts_upstream_of_negative_effect ISO (MGI:5009774|PMID:21047779) RGD PMID:21047779 MGI:5009774 NCBI chr 2:115,175,275...115,249,034
Ensembl chr 2:115,174,984...115,249,032
JBrowse link
G Zfp57 zinc finger protein 57 involved_in ISO
ISS
(PMID:18622393)
GO_REF:0000024
(MGI:3826319|PMID:18854139)
RGD
UniProt
PMID:18622393 PMID:18854139 GO_REF:0000024 MGI:3826319 NCBI chr20:1,521,323...1,534,884
Ensembl chr20:1,521,323...1,529,846
JBrowse link
inactivation of paternal X chromosome by genomic imprinting term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Prdm14 PR/SET domain 14 acts_upstream_of_or_within ISO MGI:3805889 (MGI:5548017|PMID:24268575) RGD PMID:24268575 MGI:5548017 NCBI chr 5:6,082,163...6,092,712
Ensembl chr 5:6,082,442...6,092,712
JBrowse link
G Smchd1 structural maintenance of chromosomes flexible hinge domain containing 1 acts_upstream_of_or_within ISO MGI:3586547 (MGI:3821390|PMID:18425126), (MGI:5532809|PMID:23754746) RGD PMID:18425126 PMID:23754746 MGI:3821390 MGI:5532809 NCBI chr 9:111,243,445...111,387,272
Ensembl chr 9:111,247,702...111,349,665
JBrowse link
G Xist X inactive specific transcript acts_upstream_of_or_within ISO MGI:1336196|MGI:2445460 (MGI:3582103|PMID:15992549), (MGI:5429141|PMID:22573614), (MGI:5506833|PMID:23658530) RGD PMID:15992549 PMID:22573614 PMID:23658530 MGI:3582103 MGI:5429141 MGI:5506833 NCBI chr  X:68,474,987...68,492,500 JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20350
    cellular process 18813
      cellular process involved in reproduction in multicellular organism 588
        genomic imprinting 28
          autosome genomic imprinting 8
          epigenetic programming in the central cell 0
          inactivation of paternal X chromosome by genomic imprinting 3
Path 2
Term Annotations click to browse term
  biological_process 20350
    biological regulation 13628
      regulation of biological process 13221
        regulation of cellular process 12678
          regulation of cellular metabolic process 6110
            regulation of cellular biosynthetic process 5375
              regulation of macromolecule biosynthetic process 5232
                regulation of gene expression 5117
                  epigenetic regulation of gene expression 248
                    genomic imprinting 28
                      autosome genomic imprinting 8
                      epigenetic programming in the central cell 0
                      inactivation of paternal X chromosome by genomic imprinting 3
paths to the root