Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)

ONTOLOGY REPORT - ANNOTATIONS

Term:cellular response to light stimulus
go back to main search page
Accession:GO:0071482 term browser browse the term
Definition:Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a light stimulus, electromagnetic radiation of wavelengths classified as infrared, visible or ultraviolet light.


show annotations for term's descendants           Sort by:
cellular response to light stimulus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Crb1 crumbs family member 1, photoreceptor morphogenesis associated acts_upstream_of_or_within IMP (PMID:17234588) MGI PMID:17234588 NCBI chr 1:139,101,288...139,307,262
Ensembl chr 1:139,124,794...139,304,838 		JBrowse link
G Gpr52 G protein-coupled receptor 52 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 1:160,402,287...160,407,274
Ensembl chr 1:160,403,908...160,405,544 		JBrowse link
G Gpr88 G-protein coupled receptor 88 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 3:116,043,304...116,047,123
Ensembl chr 3:116,043,303...116,047,152 		JBrowse link
G Hif1a hypoxia inducible factor 1, alpha subunit ISO RGD PMID:17475674 RGD:9068879 NCBI chr12:73,948,186...73,994,304
Ensembl chr12:73,948,149...73,994,304 		JBrowse link
G Kcne1 potassium voltage-gated channel, Isk-related subfamily, member 1 involved_in ISO
IEA 		RGD
Ensembl		 PMID:24202060 GO_REF:0000107 RGD:12910722 NCBI chr16:92,142,889...92,156,356
Ensembl chr16:92,142,870...92,156,356 		JBrowse link
G Opn1mw opsin 1 (cone pigments), medium-wave-sensitive (color blindness, deutan) involved_in IBA GO_Central GO_REF:0000033 NCBI chr  X:73,171,072...73,194,362
Ensembl chr  X:73,171,070...73,194,366 		JBrowse link
G Opn1sw opsin 1 (cone pigments), short-wave-sensitive (color blindness, tritan) involved_in IBA GO_Central GO_REF:0000033 NCBI chr 6:29,376,670...29,380,512
Ensembl chr 6:29,376,670...29,388,467 		JBrowse link
G Opn3 opsin 3 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 1:175,489,993...175,520,198
Ensembl chr 1:175,489,987...175,520,342 		JBrowse link
G Opn4 opsin 4 (melanopsin) involved_in IBA GO_Central GO_REF:0000033 NCBI chr14:34,312,575...34,322,099
Ensembl chr14:34,312,575...34,322,099 		JBrowse link
G Opn5 opsin 5 involved_in IMP
IBA 		(PMID:31607531) UniProt
GO_Central		 PMID:31607531 GO_REF:0000033 NCBI chr17:42,867,670...42,922,321
Ensembl chr17:42,867,674...42,922,286 		JBrowse link
G Rgr retinal G protein coupled receptor involved_in IBA GO_Central GO_REF:0000033 NCBI chr14:36,756,866...36,770,971
Ensembl chr14:36,756,866...36,770,921 		JBrowse link
G Rho rhodopsin acts_upstream_of_or_within
involved_in 		IMP
IBA 		(PMID:21052544) MGI
GO_Central		 PMID:21052544 GO_REF:0000033 NCBI chr 6:115,903,741...115,916,999
Ensembl chr 6:115,908,709...115,916,997 		JBrowse link
G Rp1 retinitis pigmentosa 1 (human) acts_upstream_of_or_within IMP (PMID:21052544) MGI PMID:21052544 NCBI chr 1:4,185,896...4,479,508
Ensembl chr 1:4,069,780...4,479,464 		JBrowse link
G Rpgr retinitis pigmentosa GTPase regulator acts_upstream_of_or_within IMP (PMID:10725384) MGI PMID:10725384 NCBI chr  X:10,024,455...10,083,034
Ensembl chr  X:9,939,860...10,083,159 		JBrowse link
G Rrh retinal pigment epithelium derived rhodopsin homolog involved_in IBA GO_Central GO_REF:0000033 NCBI chr 3:129,596,837...129,618,140
Ensembl chr 3:129,598,057...129,616,236 		JBrowse link
G Trpm1 transient receptor potential cation channel, subfamily M, member 1 acts_upstream_of_or_within
involved_in 		IMP
ISO 		(PMID:21052544)
(PMID:19861548)
(PMID:19966281) 		MGI
GO_Central
UniProt		 PMID:19861548 PMID:19966281 PMID:21052544 GO_REF:0000119 NCBI chr 7:63,803,583...63,923,630
Ensembl chr 7:63,803,583...63,919,523 		JBrowse link
cellular response to high light intensity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Akt2 thymoma viral proto-oncogene 2 acts_upstream_of_or_within IMP (PMID:17202487) MGI PMID:17202487 NCBI chr 7:27,290,977...27,340,251
Ensembl chr 7:27,290,977...27,340,251 		JBrowse link
G Slc24a4 solute carrier family 24 (sodium/potassium/calcium exchanger), member 4 involved_in IMP (PMID:28650316) ARUK-UCL PMID:28650316 NCBI chr12:102,094,986...102,239,562
Ensembl chr12:102,094,992...102,233,350 		JBrowse link
cellular response to UV term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Agap3 ArfGAP with GTPase domain, ankyrin repeat and PH domain 3 acts_upstream_of_or_within ISO (PMID:16461359) MGI PMID:16461359 NCBI chr 5:24,657,175...24,707,045
Ensembl chr 5:24,657,175...24,707,045 		JBrowse link
G Aqp1 aquaporin 1 involved_in ISS
ISO 		UniProt
GO_Central		 GO_REF:0000024 GO_REF:0000119 NCBI chr 6:55,313,284...55,325,540
Ensembl chr 6:55,313,417...55,325,540 		JBrowse link
G Atr ataxia telangiectasia and Rad3 related involved_in ISO GO_Central GO_REF:0000119 NCBI chr 9:95,739,655...95,834,813
Ensembl chr 9:95,739,650...95,833,834 		JBrowse link
G Aurkb aurora kinase B involved_in ISS
ISO 		UniProt
GO_Central		 GO_REF:0000024 GO_REF:0000119 NCBI chr11:68,936,477...68,942,490
Ensembl chr11:68,936,473...68,942,490 		JBrowse link
G Bak1 BCL2-antagonist/killer 1 involved_in ISO
IMP 		(PMID:15901672) GO_Central
UniProt		 PMID:15901672 GO_REF:0000119 NCBI chr17:27,238,786...27,247,601
Ensembl chr17:27,238,784...27,247,983 		JBrowse link
G Bax BCL2-associated X protein acts_upstream_of_or_within IGI (PMID:14963330) MGI PMID:14963330 NCBI chr 7:45,111,124...45,116,332
Ensembl chr 7:45,111,121...45,116,322 		JBrowse link
G Bmf BCL2 modifying factor involved_in ISO
IDA 		(PMID:23629966) GO_Central
CAFA		 PMID:23629966 GO_REF:0000119 NCBI chr 2:118,359,238...118,385,240
Ensembl chr 2:118,359,238...118,380,168 		JBrowse link
G Casp9 caspase 9 involved_in ISO
ISS 		GO_Central
UniProt		 GO_REF:0000024 GO_REF:0000119 NCBI chr 4:141,520,923...141,543,289
Ensembl chr 4:141,520,923...141,543,287 		JBrowse link
G Cdc25a cell division cycle 25A involved_in ISO GO_Central GO_REF:0000119 NCBI chr 9:109,704,545...109,722,963
Ensembl chr 9:109,704,647...109,722,963 		JBrowse link
G Cops9 COP9 signalosome subunit 9 involved_in ISO
ISS 		GO_Central
UniProt		 GO_REF:0000024 GO_REF:0000119 NCBI chr 1:92,564,867...92,569,707
Ensembl chr 1:92,564,867...92,569,707 		JBrowse link
G Crebbp CREB binding protein involved_in ISS
ISO 		UniProt
GO_Central		 GO_REF:0000024 GO_REF:0000119 NCBI chr16:3,899,198...4,031,864
Ensembl chr16:3,899,192...4,031,861 		JBrowse link
G Cul4a cullin 4A involved_in ISO
EXP 		(PMID:22118460) GO_Central
ComplexPortal		 PMID:22118460 GO_REF:0000119 NCBI chr 8:13,155,623...13,197,940
Ensembl chr 8:13,155,621...13,197,940 		JBrowse link
G Cul4b cullin 4B involved_in ISS ComplexPortal GO_REF:0000114 NCBI chr  X:37,620,493...37,665,073
Ensembl chr  X:37,622,151...37,665,073 		JBrowse link
G Ddb1 damage specific DNA binding protein 1 involved_in EXP
ISS
ISO 		(PMID:22118460) ComplexPortal
GO_Central		 PMID:22118460 GO_REF:0000114 GO_REF:0000119 NCBI chr19:10,582,961...10,607,186
Ensembl chr19:10,582,691...10,607,183 		JBrowse link
G Ddb2 damage specific DNA binding protein 2 involved_in ISO
ISS
EXP 		(PMID:22118460) GO_Central
ComplexPortal		 PMID:22118460 GO_REF:0000114 GO_REF:0000119 NCBI chr 2:91,041,924...91,067,465
Ensembl chr 2:91,041,917...91,067,327 		JBrowse link
G Ddias DNA damage-induced apoptosis suppressor acts_upstream_of_or_within IMP (PMID:17515607) MGI PMID:17515607 NCBI chr 7:92,506,734...92,523,455
Ensembl chr 7:92,506,733...92,523,455 		JBrowse link
G Dhx36 DEAH-box helicase 36 involved_in ISS
ISO 		UniProt
GO_Central		 GO_REF:0000024 GO_REF:0000119 NCBI chr 3:62,375,436...62,414,464
Ensembl chr 3:62,375,434...62,414,425 		JBrowse link
G Eif2ak4 eukaryotic translation initiation factor 2 alpha kinase 4 involved_in IDA (PMID:12176355) UniProt PMID:12176355 NCBI chr 2:118,219,065...118,305,715
Ensembl chr 2:118,219,099...118,305,715 		JBrowse link
G Eif2s1 eukaryotic translation initiation factor 2, subunit 1 alpha involved_in IDA (PMID:12176355) UniProt PMID:12176355 NCBI chr12:78,908,846...78,933,784
Ensembl chr12:78,908,593...78,933,784 		JBrowse link
G Ep300 E1A binding protein p300 involved_in ISO
ISS 		GO_Central
UniProt		 GO_REF:0000024 GO_REF:0000119 NCBI chr15:81,470,329...81,536,273
Ensembl chr15:81,469,552...81,536,278 		JBrowse link
G Ercc4 excision repair cross-complementing rodent repair deficiency, complementation group 4 involved_in ISS
ISO 		UniProt
GO_Central		 GO_REF:0000024 GO_REF:0000119 NCBI chr16:12,927,600...12,969,873
Ensembl chr16:12,927,548...12,968,481 		JBrowse link
G Fbxw7 F-box and WD-40 domain protein 7 involved_in ISO
ISS 		GO_Central
ParkinsonsUK-UCL		 GO_REF:0000024 GO_REF:0000119 NCBI chr 3:84,721,901...84,886,505
Ensembl chr 3:84,722,575...84,886,505 		JBrowse link
G Ino80 INO80 complex subunit involved_in ISO GO_Central GO_REF:0000119 NCBI chr 2:119,203,523...119,308,168
Ensembl chr 2:119,203,523...119,308,168 		JBrowse link
G Kdm1a lysine (K)-specific demethylase 1A acts_upstream_of_or_within
involved_in 		ISO
IEA 		(PMID:24217620) MGI
Ensembl		 PMID:24217620 GO_REF:0000107 NCBI chr 4:136,277,844...136,330,127
Ensembl chr 4:136,277,851...136,330,034 		JBrowse link
G Mapk13 mitogen-activated protein kinase 13 involved_in ISO
IEA 		GO_Central
Ensembl		 GO_REF:0000107 GO_REF:0000119 NCBI chr17:28,988,260...28,997,678
Ensembl chr17:28,988,271...28,999,207 		JBrowse link
G Mapk9 mitogen-activated protein kinase 9 involved_in ISO RGD
GO_Central		 PMID:8875991 GO_REF:0000096 RGD:2304246 NCBI chr11:49,737,558...49,777,248
Ensembl chr11:49,737,578...49,777,248 		JBrowse link
G Mettl3 methyltransferase 3, N6-adenosine-methyltransferase complex catalytic subunit involved_in ISS
ISO 		UniProt
GO_Central		 GO_REF:0000024 GO_REF:0000119 NCBI chr14:52,532,298...52,548,555
Ensembl chr14:52,532,298...52,542,585 		JBrowse link
G Myc myelocytomatosis oncogene involved_in ISO (PMID:17873522) UniProt PMID:17873522 NCBI chr15:61,857,190...61,862,210
Ensembl chr15:61,857,240...61,862,223 		JBrowse link
G N4bp1 NEDD4 binding protein 1 involved_in ISO
IMP 		(PMID:17592138) GO_Central
BHF-UCL		 PMID:17592138 GO_REF:0000119 NCBI chr 8:87,567,764...87,612,489
Ensembl chr 8:87,534,788...87,611,886 		JBrowse link
G Nedd4 neural precursor cell expressed, developmentally down-regulated 4 involved_in ISO GO_Central GO_REF:0000119 NCBI chr 9:72,569,613...72,657,133
Ensembl chr 9:72,569,628...72,657,134 		JBrowse link
G Nfatc4 nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 4 acts_upstream_of_or_within IGI (PMID:17242187) MGI PMID:17242187 NCBI chr14:56,062,252...56,071,400
Ensembl chr14:56,060,601...56,071,400 		JBrowse link
G Noc2l NOC2 like nucleolar associated transcriptional repressor involved_in ISO GO_Central GO_REF:0000119 NCBI chr 4:156,319,112...156,332,078
Ensembl chr 4:156,320,376...156,332,073 		JBrowse link
G Npm1 nucleophosmin 1 involved_in ISO GO_Central GO_REF:0000119 NCBI chr11:33,102,498...33,114,143
Ensembl chr11:33,102,287...33,113,206 		JBrowse link
G Nscme3l NSE3 homolog, SMC5-SMC6 complex component like involved_in ISO GO_Central GO_REF:0000119 NCBI chr19:5,552,795...5,553,815
Ensembl chr19:5,552,795...5,553,815 		JBrowse link
G Nsmce3 NSE3 homolog, SMC5-SMC6 complex component involved_in ISS
ISO 		UniProt
GO_Central		 GO_REF:0000024 GO_REF:0000119 NCBI chr 7:64,521,430...64,522,788
Ensembl chr 7:64,516,800...64,522,745 		JBrowse link
G Parp1 poly (ADP-ribose) polymerase family, member 1 involved_in ISO GO_Central GO_REF:0000119 NCBI chr 1:180,396,456...180,428,564
Ensembl chr 1:180,396,489...180,428,819 		JBrowse link
G Pbk PDZ binding kinase acts_upstream_of_or_within IMP (PMID:21715333) MGI PMID:21715333 NCBI chr14:66,043,337...66,055,271
Ensembl chr14:66,043,286...66,055,271 		JBrowse link
G Pcna proliferating cell nuclear antigen involved_in ISO
ISS 		RGD
UniProt
GO_Central		 PMID:8905661 GO_REF:0000024 GO_REF:0000119 RGD:10448977 NCBI chr 2:132,091,206...132,095,100
Ensembl chr 2:132,091,082...132,095,234 		JBrowse link
G Pik3r1 phosphoinositide-3-kinase regulatory subunit 1 acts_upstream_of_or_within IMP
IGI 		(PMID:17242187) MGI PMID:17242187 NCBI chr13:101,817,269...101,904,725
Ensembl chr13:101,817,071...101,904,725 		JBrowse link
G Pold1 polymerase (DNA directed), delta 1, catalytic subunit involved_in ISO
ISS 		GO_Central
UniProt		 GO_REF:0000024 GO_REF:0000119 NCBI chr 7:44,182,168...44,198,239
Ensembl chr 7:44,182,170...44,198,273 		JBrowse link
G Polk polymerase (DNA directed), kappa involved_in ISS
ISO 		UniProt
GO_Central		 GO_REF:0000024 GO_REF:0000119 NCBI chr13:96,617,195...96,679,087
Ensembl chr13:96,617,198...96,679,087 		JBrowse link
G Ppp1r15a protein phosphatase 1, regulatory subunit 15A ISO RGD PMID:9811446 RGD:9999409 NCBI chr 7:45,172,341...45,175,692
Ensembl chr 7:45,172,340...45,175,692 		JBrowse link
G Prkcd protein kinase C, delta involved_in ISS
ISO 		UniProt
GO_Central		 GO_REF:0000024 GO_REF:0000119 NCBI chr14:30,317,310...30,348,637
Ensembl chr14:30,317,311...30,348,167 		JBrowse link
G Ptn pleiotrophin ISO RGD PMID:17925408 RGD:10044023 NCBI chr 6:36,691,863...36,787,114
Ensembl chr 6:36,691,864...36,787,155 		JBrowse link
G Ptprk protein tyrosine phosphatase receptor type K involved_in ISO GO_Central GO_REF:0000119 NCBI chr10:27,950,406...28,473,393
Ensembl chr10:27,950,816...28,473,393 		JBrowse link
G Rbx1 ring-box 1 involved_in ISO
EXP
ISS 		(PMID:22118460) GO_Central
ComplexPortal		 PMID:22118460 GO_REF:0000114 GO_REF:0000119 NCBI chr15:81,350,517...81,360,570
Ensembl chr15:81,350,497...81,360,570 		JBrowse link
G Rbx1-ps ring-box 1, pseudogene involved_in ISO GO_Central GO_REF:0000119 NCBI chr17:36,246,354...36,246,897
Ensembl chr17:36,246,516...36,246,842 		JBrowse link
G Rhbdd1 rhomboid domain containing 1 involved_in IDA (PMID:19358743) UniProt PMID:19358743 NCBI chr 1:82,294,178...82,423,087
Ensembl chr 1:82,294,173...82,423,087 		JBrowse link
G Rhno1 RAD9-HUS1-RAD1 interacting nuclear orphan 1 involved_in ISO GO_Central GO_REF:0000119 NCBI chr 6:128,333,962...128,339,876
Ensembl chr 6:128,333,963...128,339,874 		JBrowse link
G Rnf168 ring finger protein 168 acts_upstream_of_or_within IDA (PMID:24217620) MGI PMID:24217620 NCBI chr16:32,096,279...32,120,260
Ensembl chr16:32,096,277...32,120,252 		JBrowse link
G Rpl26 ribosomal protein L26 involved_in ISO GO_Central GO_REF:0000119 NCBI chr11:68,792,392...68,795,360
Ensembl chr11:68,792,409...68,797,815 		JBrowse link
G Ruvbl2 RuvB-like AAA ATPase 2 involved_in ISO
IEA 		GO_Central
Ensembl		 GO_REF:0000107 GO_REF:0000119 NCBI chr 7:45,071,320...45,084,817
Ensembl chr 7:45,071,184...45,087,520 		JBrowse link
G Sde2 SDE2 telomere maintenance homolog (S. pombe) involved_in IEA
ISO 		Ensembl
GO_Central		 GO_REF:0000107 GO_REF:0000119 NCBI chr 1:180,678,716...180,695,678
Ensembl chr 1:180,678,692...180,695,678 		JBrowse link
G Smpd1 sphingomyelin phosphodiesterase 1, acid lysosomal involved_in ISO
ISS 		GO_Central
UniProt		 GO_REF:0000024 GO_REF:0000119 NCBI chr 7:105,203,567...105,207,596
Ensembl chr 7:105,203,567...105,207,596 		JBrowse link
G Taf1 TATA-box binding protein associated factor 1 involved_in ISO (PMID:24289924) ParkinsonsUK-UCL PMID:24289924 NCBI chr  X:100,576,335...100,644,635
Ensembl chr  X:100,576,279...100,644,640 		JBrowse link
G Tmem161a transmembrane protein 161A involved_in ISO
IEA 		GO_Central
Ensembl		 GO_REF:0000107 GO_REF:0000119 NCBI chr 8:70,624,979...70,636,331
Ensembl chr 8:70,625,006...70,636,331 		JBrowse link
G Trex1 three prime repair exonuclease 1 acts_upstream_of_or_within IDA (PMID:20511593) MGI PMID:20511593 NCBI chr 9:108,887,000...108,888,791
Ensembl chr 9:108,887,001...108,888,802 		JBrowse link
G Triap1 TP53 regulated inhibitor of apoptosis 1 involved_in IEA
ISO 		Ensembl
GO_Central		 GO_REF:0000107 GO_REF:0000119 NCBI chr 5:115,479,290...115,481,612
Ensembl chr 5:115,479,284...115,481,628 		JBrowse link
G Trp53 transformation related protein 53 acts_upstream_of_or_within
involved_in 		IGI
IDA
ISO 		(PMID:14963330)
(PMID:23629966) 		MGI
CAFA
GO_Central		 PMID:14963330 PMID:23629966 GO_REF:0000119 NCBI chr11:69,471,174...69,482,699
Ensembl chr11:69,471,185...69,482,699 		JBrowse link
G Trp53inp1 transformation related protein 53 inducible nuclear protein 1 acts_upstream_of_or_within IDA (PMID:11557757) MGI PMID:11557757 NCBI chr 4:11,156,441...11,174,379
Ensembl chr 4:11,156,431...11,174,379 		JBrowse link
G Usp28 ubiquitin specific peptidase 28 involved_in ISO GO_Central GO_REF:0000119 NCBI chr 9:48,896,577...48,953,817
Ensembl chr 9:48,896,675...48,953,817 		JBrowse link
G Yy1 YY1 transcription factor involved_in IEA
ISO 		Ensembl
GO_Central		 GO_REF:0000107 GO_REF:0000119 NCBI chr12:108,758,841...108,786,074
Ensembl chr12:108,758,899...108,786,074 		JBrowse link
G Zbtb1 zinc finger and BTB domain containing 1 involved_in ISO
IEA 		GO_Central
Ensembl		 GO_REF:0000107 GO_REF:0000119 NCBI chr12:76,416,825...76,443,729
Ensembl chr12:76,417,040...76,443,724 		JBrowse link
cellular response to UV-A term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cers1 ceramide synthase 1 involved_in ISO GO_Central GO_REF:0000119 NCBI chr 8:70,768,425...70,784,238
Ensembl chr 8:70,768,425...70,784,242 		JBrowse link
G Mme membrane metallo endopeptidase involved_in ISO
ISS 		GO_Central
UniProt		 GO_REF:0000024 GO_REF:0000119 NCBI chr 3:63,202,632...63,291,134
Ensembl chr 3:63,148,958...63,293,451 		JBrowse link
G Mmp1a matrix metallopeptidase 1a (interstitial collagenase) involved_in ISS
ISO 		UniProt
GO_Central		 GO_REF:0000024 GO_REF:0000119 NCBI chr 9:7,464,141...7,476,870
Ensembl chr 9:7,464,141...7,476,857 		JBrowse link
G Mmp1b matrix metallopeptidase 1b (interstitial collagenase) involved_in ISO GO_Central GO_REF:0000119 NCBI chr 9:7,367,670...7,388,026
Ensembl chr 9:7,368,239...7,388,047 		JBrowse link
G Mmp2 matrix metallopeptidase 2 involved_in ISO
ISS 		GO_Central
UniProt		 GO_REF:0000024 GO_REF:0000119 NCBI chr 8:93,553,920...93,580,049
Ensembl chr 8:93,553,919...93,580,048 		JBrowse link
G Mmp3 matrix metallopeptidase 3 involved_in ISO
ISS 		GO_Central
UniProt		 GO_REF:0000024 GO_REF:0000119 NCBI chr 9:7,445,845...7,455,975
Ensembl chr 9:7,445,822...7,455,975 		JBrowse link
G Mmp9 matrix metallopeptidase 9 involved_in ISO
IEA 		GO_Central
Ensembl		 GO_REF:0000107 GO_REF:0000119 NCBI chr 2:164,782,246...164,797,770
Ensembl chr 2:164,782,700...164,797,770 		JBrowse link
G Opn1sw opsin 1 (cone pigments), short-wave-sensitive (color blindness, tritan) involved_in ISS
ISO 		UniProt
GO_Central		 GO_REF:0000024 GO_REF:0000119 NCBI chr 6:29,376,670...29,380,512
Ensembl chr 6:29,376,670...29,388,467 		JBrowse link
G Opn3 opsin 3 involved_in ISO
IEA 		GO_Central
Ensembl		 GO_REF:0000107 GO_REF:0000119 NCBI chr 1:175,489,993...175,520,198
Ensembl chr 1:175,489,987...175,520,342 		JBrowse link
G Opn5 opsin 5 involved_in ISO
IEA 		GO_Central
Ensembl		 GO_REF:0000107 GO_REF:0000119 NCBI chr17:42,867,670...42,922,321
Ensembl chr17:42,867,674...42,922,286 		JBrowse link
G Ppid peptidylprolyl isomerase D (cyclophilin D) involved_in ISO
ISS 		GO_Central
UniProt		 GO_REF:0000024 GO_REF:0000119 NCBI chr 3:79,498,644...79,511,117
Ensembl chr 3:79,498,649...79,510,957 		JBrowse link
G Timp1 tissue inhibitor of metalloproteinase 1 involved_in ISS
ISO 		UniProt
GO_Central		 GO_REF:0000024 GO_REF:0000119 NCBI chr  X:20,736,524...20,740,972
Ensembl chr  X:20,736,405...20,740,974 		JBrowse link
cellular response to UV-B term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdkn1a cyclin dependent kinase inhibitor 1A involved_in IDA (PMID:25329316) UniProt PMID:25329316 NCBI chr17:29,309,953...29,319,696
Ensembl chr17:29,309,950...29,319,701 		JBrowse link
G Crip1 cysteine-rich protein 1 involved_in ISS
ISO 		(PMID:20415737) UniProt
GO_Central		 PMID:20415737 GO_REF:0000119 NCBI chr12:113,115,632...113,117,499
Ensembl chr12:113,109,936...113,117,499 		JBrowse link
G Hyal1 hyaluronoglucosaminidase 1 involved_in ISS
ISO 		UniProt
GO_Central		 GO_REF:0000024 GO_REF:0000119 NCBI chr 9:107,454,149...107,458,898
Ensembl chr 9:107,454,126...107,458,909 		JBrowse link
G Hyal2 hyaluronoglucosaminidase 2 involved_in ISS
ISO 		UniProt
GO_Central		 GO_REF:0000024 GO_REF:0000119 NCBI chr 9:107,445,096...107,449,975
Ensembl chr 9:107,445,144...107,449,978 		JBrowse link
G Hyal3 hyaluronoglucosaminidase 3 involved_in ISO
IEA 		GO_Central
Ensembl		 GO_REF:0000107 GO_REF:0000119 NCBI chr 9:107,458,495...107,464,558
Ensembl chr 9:107,458,017...107,464,558 		JBrowse link
G Map3k20 mitogen-activated protein kinase kinase kinase 20 involved_in ISS
ISO 		UniProt
GO_Central		 GO_REF:0000024 GO_REF:0000119 NCBI chr 2:72,115,970...72,272,954
Ensembl chr 2:72,115,981...72,272,954 		JBrowse link
G Mapk11 mitogen-activated protein kinase 11 involved_in ISO
IEA 		GO_Central
Ensembl		 GO_REF:0000107 GO_REF:0000119 NCBI chr15:89,026,685...89,033,809
Ensembl chr15:89,026,689...89,033,831 		JBrowse link
G Mapk14 mitogen-activated protein kinase 14 involved_in ISO
IEA 		GO_Central
Ensembl		 GO_REF:0000107 GO_REF:0000119 NCBI chr17:28,910,316...28,967,379
Ensembl chr17:28,910,303...28,967,380 		JBrowse link
G Mfap4 microfibrillar-associated protein 4 involved_in ISO
IEA 		GO_Central
Ensembl		 GO_REF:0000107 GO_REF:0000119 NCBI chr11:61,376,257...61,379,536
Ensembl chr11:61,376,257...61,379,726 		JBrowse link
G Mme membrane metallo endopeptidase involved_in ISS
ISO 		UniProt
GO_Central		 GO_REF:0000024 GO_REF:0000119 NCBI chr 3:63,202,632...63,291,134
Ensembl chr 3:63,148,958...63,293,451 		JBrowse link
G Nlrp1a NLR family, pyrin domain containing 1A involved_in ISO GO_Central GO_REF:0000119 NCBI chr11:70,982,023...71,035,780
Ensembl chr11:70,983,062...71,035,530 		JBrowse link
G Nlrp1b NLR family, pyrin domain containing 1B involved_in ISO GO_Central GO_REF:0000119 NCBI chr11:71,043,400...71,133,340
Ensembl chr11:71,043,928...71,121,559 		JBrowse link
G Rpl13a ribosomal protein L13A ISO RGD PMID:10483362 RGD:11036101 NCBI chr 7:44,774,987...44,778,169
Ensembl chr 7:44,774,982...44,778,185 		JBrowse link
G Rpl35 ribosomal protein L35 ISO RGD PMID:10483362 RGD:11036101 NCBI chr 2:38,891,593...38,895,143
Ensembl chr 2:38,891,592...38,895,636 		JBrowse link
G Stk11 serine/threonine kinase 11 involved_in IDA
ISO 		(PMID:25329316) UniProt
GO_Central		 PMID:25329316 GO_REF:0000119 NCBI chr10:79,951,602...79,966,513
Ensembl chr10:79,951,637...79,966,516 		JBrowse link
cellular response to UV-C term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ei24 etoposide induced 2.4 mRNA acts_upstream_of_or_within IGI (PMID:24014029) MGI PMID:24014029 NCBI chr 9:36,690,449...36,708,630
Ensembl chr 9:36,690,455...36,708,689 		JBrowse link
G Mdm2 transformed mouse 3T3 cell double minute 2 involved_in ISO
IEA 		RGD
Ensembl		 PMID:14558917 GO_REF:0000107 RGD:2317408 NCBI chr10:117,524,780...117,546,663
Ensembl chr10:117,524,780...117,546,663 		JBrowse link
G Pierce1 piercer of microtubule wall 1 acts_upstream_of_or_within IMP (PMID:21159655) MGI PMID:21159655 NCBI chr 2:28,352,013...28,356,336
Ensembl chr 2:28,352,013...28,356,344 		JBrowse link
G Polh polymerase (DNA directed), eta (RAD 30 related) acts_upstream_of_or_within IGI
IMP 		(PMID:17114294) MGI PMID:17114294 NCBI chr17:46,482,281...46,513,567
Ensembl chr17:46,482,281...46,513,571 		JBrowse link
G Poli polymerase (DNA directed), iota acts_upstream_of_or_within IGI
IMP 		(PMID:17114294) MGI PMID:17114294 NCBI chr18:70,641,754...70,668,021
Ensembl chr18:70,641,751...70,663,691 		JBrowse link
G Trp53 transformation related protein 53 acts_upstream_of_or_within IGI (PMID:24014029) MGI PMID:24014029 NCBI chr11:69,471,174...69,482,699
Ensembl chr11:69,471,185...69,482,699 		JBrowse link
dark adaptation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gnb5 guanine nucleotide binding protein (G protein), beta 5 acts_upstream_of_or_within IDA (PMID:23555598) MGI PMID:23555598 NCBI chr 9:75,213,570...75,253,205
Ensembl chr 9:75,213,570...75,253,158 		JBrowse link
G Rgs9 regulator of G-protein signaling 9 acts_upstream_of_or_within IDA (PMID:23555598) MGI PMID:23555598 NCBI chr11:109,116,174...109,189,013
Ensembl chr11:109,116,181...109,188,955 		JBrowse link
G Tent2 terminal nucleotidyltransferase 2 ISO RGD PMID:23700402 RGD:11041783 NCBI chr13:93,282,363...93,330,662
Ensembl chr13:93,282,790...93,328,893 		JBrowse link
DNA synthesis involved in UV-damage excision repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pola1 polymerase (DNA directed), alpha 1 NOT|involved_in ISS UniProt GO_REF:0000024 NCBI chr  X:92,348,372...92,675,993
Ensembl chr  X:92,348,373...92,675,761 		JBrowse link
G Pold3 polymerase (DNA-directed), delta 3, accessory subunit involved_in IBA GO_Central GO_REF:0000033 NCBI chr 7:99,731,317...99,770,709
Ensembl chr 7:99,731,318...99,770,772 		JBrowse link
G Trex1 three prime repair exonuclease 1 acts_upstream_of_or_within IMP (PMID:23993650) MGI PMID:23993650 NCBI chr 9:108,887,000...108,888,791
Ensembl chr 9:108,887,001...108,888,802 		JBrowse link
G protein-coupled opsin signaling pathway term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gnat1 G protein subunit alpha transducin 1 involved_in ISO
IEA 		RGD
Ensembl
GO_Central		 PMID:11931744 GO_REF:0000096 GO_REF:0000107 RGD:1599009 NCBI chr 9:107,551,636...107,556,833
Ensembl chr 9:107,551,673...107,556,911 		JBrowse link
G Pcp2 Purkinje cell protein 2 (L7) acts_upstream_of_or_within IMP (PMID:18768681) MGI PMID:18768681 NCBI chr 8:3,673,369...3,675,547
Ensembl chr 8:3,673,371...3,675,545 		JBrowse link
G Rho rhodopsin involved_in ISO
ISS 		RGD
GO_Central
UniProt		 PMID:8814134 GO_REF:0000024 GO_REF:0000096 RGD:6893595 NCBI chr 6:115,903,741...115,916,999
Ensembl chr 6:115,908,709...115,916,997 		JBrowse link
phototransduction, UV term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Opn5 opsin 5 involved_in ISO
IMP 		(PMID:22043319) GO_Central
UniProt		 PMID:22043319 GO_REF:0000119 NCBI chr17:42,867,670...42,922,321
Ensembl chr17:42,867,674...42,922,286 		JBrowse link
red, far-red light phototransduction term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rho rhodopsin involved_in ISO RGD
GO_Central		 PMID:2525480 GO_REF:0000096 RGD:6893558 NCBI chr 6:115,903,741...115,916,999
Ensembl chr 6:115,908,709...115,916,997 		JBrowse link
regulation of mRNA stability involved in cellular response to UV term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Npm1 nucleophosmin 1 involved_in ISO GO_Central GO_REF:0000119 NCBI chr11:33,102,498...33,114,143
Ensembl chr11:33,102,287...33,113,206 		JBrowse link
regulation of opsin-mediated signaling pathway term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aipl1 aryl hydrocarbon receptor-interacting protein-like 1 acts_upstream_of_or_within IMP (PMID:15365173)
(PMID:15365178) 		MGI PMID:15365173 PMID:15365178 NCBI chr11:71,919,527...71,933,184
Ensembl chr11:71,918,789...71,928,335 		JBrowse link
G Grk1 G protein-coupled receptor kinase 1 involved_in ISO
ISS 		GO_Central
UniProt		 GO_REF:0000024 GO_REF:0000119 NCBI chr 8:13,455,081...13,471,951
Ensembl chr 8:13,455,081...13,471,951 		JBrowse link
regulation of translation involved in cellular response to UV term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rpl26 ribosomal protein L26 involved_in ISO
IEA 		GO_Central
Ensembl		 GO_REF:0000107 GO_REF:0000119 NCBI chr11:68,792,392...68,795,360
Ensembl chr11:68,792,409...68,797,815 		JBrowse link
UV-damage excision repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Actr5 ARP5 actin-related protein 5 involved_in ISO GO_Central GO_REF:0000119 NCBI chr 2:158,466,800...158,481,131
Ensembl chr 2:158,466,808...158,481,131 		JBrowse link
G Cul4b cullin 4B involved_in ISO
IEA 		GO_Central
Ensembl		 GO_REF:0000107 GO_REF:0000119 NCBI chr  X:37,620,493...37,665,073
Ensembl chr  X:37,622,151...37,665,073 		JBrowse link
G Ddb1 damage specific DNA binding protein 1 involved_in ISO ComplexPortal
GO_Central		 GO_REF:0000114 GO_REF:0000119 NCBI chr19:10,582,961...10,607,186
Ensembl chr19:10,582,691...10,607,183 		JBrowse link
G Ddb2 damage specific DNA binding protein 2 involved_in ISO ComplexPortal
GO_Central		 GO_REF:0000114 GO_REF:0000119 NCBI chr 2:91,041,924...91,067,465
Ensembl chr 2:91,041,917...91,067,327 		JBrowse link
G Ercc1 excision repair cross-complementing rodent repair deficiency, complementation group 1 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 7:19,079,016...19,090,449
Ensembl chr 7:19,078,703...19,090,449 		JBrowse link
G H2ac25 H2A clustered histone 25 involved_in ISO
IEA 		GO_Central
Ensembl		 GO_REF:0000107 GO_REF:0000119 NCBI chr11:58,845,511...58,846,018
Ensembl chr11:58,845,511...58,847,656 		JBrowse link
G Ino80 INO80 complex subunit involved_in IEA
ISO 		Ensembl
GO_Central		 GO_REF:0000107 GO_REF:0000119 NCBI chr 2:119,203,523...119,308,168
Ensembl chr 2:119,203,523...119,308,168 		JBrowse link
G Mc1r melanocortin 1 receptor involved_in ISO
IEA 		GO_Central
Ensembl		 GO_REF:0000107 GO_REF:0000119 NCBI chr 8:124,133,839...124,137,483
Ensembl chr 8:124,133,846...124,137,483 		JBrowse link
G Rad23a RAD23 homolog A, nucleotide excision repair protein acts_upstream_of_or_within IDA (PMID:22431748) MGI PMID:22431748 NCBI chr 8:85,561,540...85,567,361
Ensembl chr 8:85,560,648...85,567,294 		JBrowse link
G Rad23b RAD23 homolog B, nucleotide excision repair protein acts_upstream_of_or_within IDA (PMID:22431748) MGI PMID:22431748 NCBI chr 4:55,350,042...55,392,237
Ensembl chr 4:55,350,043...55,392,237 		JBrowse link
G Sirt1 sirtuin 1 involved_in ISO
IEA 		GO_Central
Ensembl		 GO_REF:0000107 GO_REF:0000119 NCBI chr10:63,154,784...63,174,814
Ensembl chr10:63,154,784...63,217,483 		JBrowse link
G Xpa xeroderma pigmentosum, complementation group A involved_in IBA GO_Central GO_REF:0000033 NCBI chr 4:46,175,222...46,196,317
Ensembl chr 4:46,155,347...46,196,311 		JBrowse link
G Xpc xeroderma pigmentosum, complementation group C involved_in IDA
ISO 		(PMID:22431748) MGI
GO_Central		 PMID:22431748 GO_REF:0000119 NCBI chr 6:91,466,287...91,492,870
Ensembl chr 6:91,466,287...91,492,870 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 28626
    response to stimulus 11024
      response to abiotic stimulus 1679
        response to radiation 557
          response to light stimulus 385
            cellular response to light stimulus 127
              G protein-coupled opsin signaling pathway + 5
              cellular response to UV + 105
              cellular response to blue light + 0
              cellular response to light intensity + 5
              cellular response to red or far red light + 1
Path 2
Term Annotations click to browse term
  biological_process 28626
    cellular process 18393
      cellular response to stimulus 8751
        cellular response to environmental stimulus 498
          cellular response to abiotic stimulus 498
            cellular response to radiation 216
              cellular response to light stimulus 127
                G protein-coupled opsin signaling pathway + 5
                cellular response to UV + 105
                cellular response to blue light + 0
                cellular response to light intensity + 5
                cellular response to red or far red light + 1
paths to the root