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ONTOLOGY REPORT - ANNOTATIONS


Term:cellular response to light stimulus
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Accession:GO:0071482 term browser browse the term
Definition:Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a light stimulus, electromagnetic radiation of wavelengths classified as infrared, visible or ultraviolet light.



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cellular response to light stimulus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CRB1 crumbs cell polarity complex component 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3696487|PMID:17234588) Ensembl
Ensembl
MGI
PMID:17234588 GO_REF:0000107 MGI:3696487 NCBI chr 1:197,201,504...197,478,455
Ensembl chr 1:197,268,204...197,478,455
JBrowse link
G GPR52 G protein-coupled receptor 52 involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr 1:174,447,964...174,449,545
Ensembl chr 1:174,447,964...174,449,545
JBrowse link
G GPR88 G protein-coupled receptor 88 involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr 1:100,538,139...100,542,021
Ensembl chr 1:100,538,139...100,542,021
JBrowse link
G HIF1A hypoxia inducible factor 1 subunit alpha ISO RGD PMID:17475674 RGD:9068879 NCBI chr14:61,695,513...61,748,258
Ensembl chr14:61,695,513...61,748,259
JBrowse link
G KCNE1 potassium voltage-gated channel subfamily E regulatory subunit 1 involved_in ISO
IEA
RGD
Ensembl
PMID:24202060 GO_REF:0000107 RGD:12910722 NCBI chr21:34,446,688...34,512,210
Ensembl chr21:34,446,688...34,512,214
JBrowse link
G OPN1LW opsin 1, long wave sensitive involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr  X:154,144,243...154,159,032
Ensembl chr  X:154,144,243...154,159,032
JBrowse link
G OPN1MW opsin 1, medium wave sensitive involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr  X:154,182,596...154,196,861
Ensembl chr  X:154,182,596...154,196,861
JBrowse link
G OPN1MW2 opsin 1, medium wave sensitive 2 involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr  X:154,219,756...154,233,286
Ensembl chr  X:154,219,756...154,233,286
JBrowse link
G OPN1MW3 opsin 1, medium wave sensitive 3 involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr  X:154,257,582...154,271,090
Ensembl chr  X:154,257,582...154,271,090
JBrowse link
G OPN1SW opsin 1, short wave sensitive involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr 7:128,772,485...128,775,794
Ensembl chr 7:128,772,485...128,775,794
JBrowse link
G OPN3 opsin 3 involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr 1:241,593,124...241,640,369
Ensembl chr 1:241,590,102...241,677,376
Ensembl chr 1:241,590,102...241,677,376
JBrowse link
G OPN4 opsin 4 involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr10:86,654,547...86,666,460
Ensembl chr10:86,654,518...86,666,460
JBrowse link
G OPN5 opsin 5 involved_in ISS
IBA
IEA
(PMID:21873635) UniProt
GO_Central
UniProt
Ensembl
GO_Central
PMID:21873635 GO_REF:0000024 GO_REF:0000107 NCBI chr 6:47,782,032...47,826,381
Ensembl chr 6:47,781,982...47,832,780
JBrowse link
G RGR retinal G protein coupled receptor involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr10:84,245,053...84,259,960
Ensembl chr10:84,230,666...84,259,960
JBrowse link
G RHO rhodopsin acts_upstream_of_or_within
involved_in
ISO
IBA
IEA
(MGI:4849309|PMID:21052544)
(PMID:21873635)
MGI
GO_Central
Ensembl
GO_Central
PMID:21052544 PMID:21873635 GO_REF:0000107 MGI:4849309 NCBI chr 3:129,528,639...129,535,344
Ensembl chr 3:129,528,639...129,535,344
JBrowse link
G RP1 RP1 axonemal microtubule associated involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:4849309|PMID:21052544) Ensembl
Ensembl
MGI
PMID:21052544 GO_REF:0000107 MGI:4849309 NCBI chr 8:54,559,185...54,871,234
Ensembl chr 8:54,509,422...54,871,720
JBrowse link
G RPGR retinitis pigmentosa GTPase regulator acts_upstream_of_or_within ISO (MGI:1354839|PMID:10725384) MGI PMID:10725384 MGI:1354839 NCBI chr  X:38,269,163...38,327,509
Ensembl chr  X:38,269,163...38,327,544
JBrowse link
G RRH retinal pigment epithelium-derived rhodopsin homolog involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr 4:109,827,972...109,844,942
Ensembl chr 4:109,827,972...109,849,123
JBrowse link
G TRPM1 transient receptor potential cation channel subfamily M member 1 involved_in
acts_upstream_of_or_within
IEA
IMP
ISO
(PMID:19896109)
(MGI:4849309|PMID:21052544)
(MGI:4420740|PMID:19966281)
InterPro
UniProt
MGI
UniProt
PMID:19896109 PMID:19966281 PMID:21052544 GO_REF:0000002 MGI:4420740 MGI:4849309 NCBI chr15:31,001,065...31,161,160
Ensembl chr15:31,001,061...31,161,273
JBrowse link
adaptation of rhodopsin mediated signaling term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G RDH11 retinol dehydrogenase 11 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3584215|PMID:15790565) MGI
Ensembl
PMID:15790565 GO_REF:0000107 MGI:3584215 NCBI chr14:67,676,800...67,695,764
Ensembl chr14:67,676,800...67,695,793
JBrowse link
G RS1 retinoschisin 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3055638|PMID:15326152) Ensembl
Ensembl
MGI
PMID:15326152 GO_REF:0000107 MGI:3055638 NCBI chr  X:18,639,688...18,672,108
Ensembl chr  X:18,639,688...18,672,108
JBrowse link
blue light signaling pathway term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CRY1 cryptochrome circadian regulator 1 involved_in NAS (PMID:8909283) UniProt
UniProt
PMID:8909283 NCBI chr12:106,991,364...107,093,549
Ensembl chr12:106,991,364...107,093,549
JBrowse link
G CRY2 cryptochrome circadian regulator 2 involved_in NAS (PMID:8909283) UniProt
UniProt
PMID:8909283 NCBI chr11:45,847,118...45,883,244
Ensembl chr11:45,847,118...45,883,248
JBrowse link
cellular response to high light intensity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AKT2 AKT serine/threonine kinase 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3695811|PMID:17202487) Ensembl
Ensembl
MGI
PMID:17202487 GO_REF:0000107 MGI:3695811 NCBI chr19:40,230,317...40,285,345
Ensembl chr19:40,230,317...40,285,536
JBrowse link
G SLC24A2 solute carrier family 24 member 2 involved_in ISS ARUK-UCL GO_REF:0000024 NCBI chr 9:19,507,455...20,307,892
Ensembl chr 9:19,507,452...19,789,037
JBrowse link
G SLC24A4 solute carrier family 24 member 4 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr14:92,322,581...92,501,481
Ensembl chr14:92,322,581...92,501,481
JBrowse link
cellular response to UV term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AQP1 aquaporin 1 (Colton blood group) involved_in IDA (PMID:19424603) UniProt
UniProt
PMID:19424603 NCBI chr 7:30,911,853...30,925,516
Ensembl chr 7:30,911,853...30,925,517
JBrowse link
G ATF4 activating transcription factor 4 involved_in ISS UniProt
UniProt
GO_REF:0000024 NCBI chr22:39,520,559...39,522,686
Ensembl chr22:39,519,695...39,522,683
JBrowse link
G ATR ATR serine/threonine kinase involved_in IMP (PMID:9925639) BHF-UCL
BHF-UCL
PMID:9925639 NCBI chr 3:142,449,235...142,578,733
Ensembl chr 3:142,449,007...142,578,733
JBrowse link
G AURKB aurora kinase B involved_in IDA (PMID:20959462) UniProt
UniProt
PMID:20959462 NCBI chr17:8,204,731...8,210,575
Ensembl chr17:8,204,733...8,210,600
JBrowse link
G BAK1 BCL2 antagonist/killer 1 involved_in ISS
IMP
IEA
(PMID:15901672) BHF-UCL
UniProt
BHF-UCL
Ensembl
UniProt
PMID:15901672 GO_REF:0000024 GO_REF:0000107 NCBI chr 6:33,572,552...33,580,276
Ensembl chr 6:33,572,547...33,580,293
JBrowse link
G BAX BCL2 associated X, apoptosis regulator involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3042308|PMID:14963330) Ensembl
MGI
Ensembl
PMID:14963330 GO_REF:0000107 MGI:3042308 NCBI chr19:48,954,875...48,961,798
Ensembl chr19:48,954,815...48,961,798
JBrowse link
G BMF Bcl2 modifying factor involved_in IDA (PMID:23629966) CAFA
CAFA
PMID:23629966 NCBI chr15:40,087,890...40,108,879
Ensembl chr15:40,087,890...40,108,892
JBrowse link
G CASP9 caspase 9 involved_in IDA (PMID:15657060) UniProt
UniProt
PMID:15657060 NCBI chr 1:15,491,401...15,524,912
Ensembl chr 1:15,490,832...15,526,534
JBrowse link
G CDC25A cell division cycle 25A involved_in IDA (PMID:19966869) UniProt
UniProt
PMID:19966869 NCBI chr 3:48,157,146...48,188,417
Ensembl chr 3:48,157,146...48,188,417
JBrowse link
G COPS9 COP9 signalosome subunit 9 involved_in IDA (PMID:26456823) UniProt
UniProt
PMID:26456823 NCBI chr 2:240,126,548...240,136,347
Ensembl chr 2:240,126,563...240,136,807
JBrowse link
G CREBBP CREB binding protein involved_in IDA (PMID:24939902) UniProt
UniProt
PMID:24939902 NCBI chr16:3,725,054...3,880,713
Ensembl chr16:3,725,054...3,880,713
JBrowse link
G CUL4A cullin 4A involved_in EXP (PMID:22118460) ComplexPortal PMID:22118460 NCBI chr13:113,208,193...113,267,108
Ensembl chr13:113,208,193...113,267,108
JBrowse link
G CUL4B cullin 4B involved_in ISS ComplexPortal GO_REF:0000114 NCBI chr  X:120,523,858...120,575,532
Ensembl chr  X:120,505,920...120,604,074
JBrowse link
G DDB1 damage specific DNA binding protein 1 involved_in ISS
EXP
(PMID:22118460) ComplexPortal PMID:22118460 GO_REF:0000114 NCBI chr11:61,299,451...61,333,105
Ensembl chr11:61,299,451...61,342,596
JBrowse link
G DDB2 damage specific DNA binding protein 2 involved_in ISS
EXP
(PMID:22118460) ComplexPortal PMID:22118460 GO_REF:0000114 NCBI chr11:47,214,454...47,239,217
Ensembl chr11:47,214,465...47,239,217
JBrowse link
G DDIAS DNA damage induced apoptosis suppressor acts_upstream_of_or_within ISO (MGI:3718924|PMID:17515607) MGI PMID:17515607 MGI:3718924 NCBI chr11:82,901,736...82,934,659
Ensembl chr11:82,899,975...82,958,277
JBrowse link
G DHX36 DEAH-box helicase 36 involved_in IMP (PMID:27940037) UniProt
UniProt
PMID:27940037 NCBI chr 3:154,272,546...154,324,487
Ensembl chr 3:154,272,546...154,324,487
JBrowse link
G EIF2AK4 eukaryotic translation initiation factor 2 alpha kinase 4 involved_in ISS UniProt
UniProt
GO_REF:0000024 NCBI chr15:39,934,115...40,035,591
Ensembl chr15:39,934,115...40,035,591
JBrowse link
G EIF2S1 eukaryotic translation initiation factor 2 subunit alpha involved_in ISS
IEA
UniProt
Ensembl
UniProt
GO_REF:0000024 GO_REF:0000107 NCBI chr14:67,360,328...67,386,516
Ensembl chr14:67,360,328...67,386,516
JBrowse link
G EP300 E1A binding protein p300 involved_in IDA (PMID:24939902) UniProt
UniProt
PMID:24939902 NCBI chr22:41,092,592...41,180,077
Ensembl chr22:41,092,592...41,180,077
JBrowse link
G ERCC4 ERCC excision repair 4, endonuclease catalytic subunit involved_in IGI
IDA
(PMID:17055345)
(PMID:32034146)
BHF-UCL
UniProt
BHF-UCL
PMID:17055345 PMID:32034146 NCBI chr16:13,920,154...13,952,348
Ensembl chr16:13,920,138...13,952,348
JBrowse link
G FBXW7 F-box and WD repeat domain containing 7 involved_in IDA (PMID:17873522) UniProt
UniProt
PMID:17873522 NCBI chr 4:152,320,544...152,536,092
Ensembl chr 4:152,320,544...152,536,092
JBrowse link
G FMR1 fragile X messenger ribonucleoprotein 1 involved_in ISS UniProt GO_REF:0000024 NCBI chr  X:147,911,919...147,951,125
Ensembl chr  X:147,911,919...147,951,125
JBrowse link
G INO80 INO80 complex ATPase subunit involved_in IMP (PMID:18026119) UniProt
UniProt
PMID:18026119 NCBI chr15:40,978,880...41,116,280
Ensembl chr15:40,978,880...41,116,280
JBrowse link
G KDM1A lysine demethylase 1A acts_upstream_of_or_within IDA (PMID:24217620) MGI
MGI
PMID:24217620 NCBI chr 1:23,019,468...23,083,689
Ensembl chr 1:23,019,443...23,083,689
JBrowse link
G MAPK13 mitogen-activated protein kinase 13 involved_in IDA (PMID:9218798) UniProt
UniProt
PMID:9218798 NCBI chr 6:36,130,513...36,144,521
Ensembl chr 6:36,127,809...36,144,524
JBrowse link
G MAPK9 mitogen-activated protein kinase 9 ISO RGD PMID:8875991 RGD:2304246 NCBI chr 5:180,233,143...180,292,083
Ensembl chr 5:180,233,143...180,292,099
JBrowse link
G METTL3 methyltransferase 3, N6-adenosine-methyltransferase complex catalytic subunit involved_in IDA (PMID:28297716) UniProt
UniProt
PMID:28297716 NCBI chr14:21,498,138...21,511,340
Ensembl chr14:21,498,133...21,511,342
JBrowse link
G MYC MYC proto-oncogene, bHLH transcription factor involved_in IEP (PMID:17873522) UniProt
UniProt
PMID:17873522 NCBI chr 8:127,735,434...127,742,951
Ensembl chr 8:127,735,434...127,742,951
JBrowse link
G N4BP1 NEDD4 binding protein 1 involved_in IMP
IEA
(PMID:17592138) BHF-UCL
Ensembl
BHF-UCL
PMID:17592138 GO_REF:0000107 NCBI chr16:48,538,726...48,610,180
Ensembl chr16:48,538,726...48,620,148
JBrowse link
G NEDD4 NEDD4 E3 ubiquitin protein ligase involved_in IMP (PMID:17996703) BHF-UCL
BHF-UCL
PMID:17996703 NCBI chr15:55,826,917...55,993,612
Ensembl chr15:55,826,922...55,993,660
JBrowse link
G NFATC4 nuclear factor of activated T cells 4 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3709926|PMID:17242187) Ensembl
Ensembl
MGI
PMID:17242187 GO_REF:0000107 MGI:3709926 NCBI chr14:24,366,911...24,379,604
Ensembl chr14:24,365,673...24,379,604
JBrowse link
G NOC2L NOC2 like nucleolar associated transcriptional repressor involved_in IDA (PMID:20959462) UniProt
UniProt
PMID:20959462 NCBI chr 1:944,203...959,256
Ensembl chr 1:944,203...959,309
JBrowse link
G NPM1 nucleophosmin 1 involved_in IDA (PMID:19160485) CAFA
CAFA
PMID:19160485 NCBI chr 5:171,387,116...171,410,900
Ensembl chr 5:171,387,116...171,411,810
JBrowse link
G NSMCE3 NSE3 homolog, SMC5-SMC6 complex component involved_in IMP (PMID:27427983) UniProt
UniProt
PMID:27427983 NCBI chr15:29,264,989...29,269,822
Ensembl chr15:29,264,989...29,269,822
JBrowse link
G PARP1 poly(ADP-ribose) polymerase 1 involved_in IMP (PMID:24289924) BHF-UCL
BHF-UCL
PMID:24289924 NCBI chr 1:226,360,691...226,408,093
Ensembl chr 1:226,360,210...226,408,154
JBrowse link
G PBK PDZ binding kinase involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5293269|PMID:21715333) Ensembl
Ensembl
MGI
PMID:21715333 GO_REF:0000107 MGI:5293269 NCBI chr 8:27,809,624...27,837,817
Ensembl chr 8:27,809,624...27,838,082
JBrowse link
G PCNA proliferating cell nuclear antigen involved_in IDA
IEA
ISO
(PMID:24939902) UniProt
UniProt
Ensembl
RGD
PMID:8905661 PMID:24939902 GO_REF:0000107 RGD:10448977 NCBI chr20:5,114,953...5,126,622
Ensembl chr20:5,114,953...5,126,626
JBrowse link
G PIK3R1 phosphoinositide-3-kinase regulatory subunit 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3709926|PMID:17242187) Ensembl
Ensembl
MGI
PMID:17242187 GO_REF:0000107 MGI:3709926 NCBI chr 5:68,215,756...68,301,821
Ensembl chr 5:68,215,740...68,301,821
JBrowse link
G POLD1 DNA polymerase delta 1, catalytic subunit involved_in IDA (PMID:24939902) UniProt
UniProt
PMID:24939902 NCBI chr19:50,384,323...50,418,018
Ensembl chr19:50,384,204...50,418,018
JBrowse link
G POLK DNA polymerase kappa involved_in IDA (PMID:28297716) UniProt
UniProt
PMID:28297716 NCBI chr 5:75,511,891...75,609,991
Ensembl chr 5:75,511,756...75,601,144
JBrowse link
G PPP1R15A protein phosphatase 1 regulatory subunit 15A ISO RGD PMID:9811446 RGD:9999409 NCBI chr19:48,872,421...48,876,058
Ensembl chr19:48,872,212...48,876,059
JBrowse link
G PRKCD protein kinase C delta involved_in IDA (PMID:17303575) UniProt
UniProt
PMID:17303575 NCBI chr 3:53,161,209...53,192,717
Ensembl chr 3:53,156,009...53,192,717
JBrowse link
G PTGS2 prostaglandin-endoperoxide synthase 2 involved_in ISO
IEA
RGD
Ensembl
Ensembl
PMID:22306367 GO_REF:0000107 RGD:5688265 NCBI chr 1:186,671,791...186,680,423
Ensembl chr 1:186,671,791...186,680,922
JBrowse link
G PTN pleiotrophin ISO RGD PMID:17925408 RGD:10044023 NCBI chr 7:137,227,341...137,343,733
Ensembl chr 7:137,227,341...137,343,774
JBrowse link
G PTPRK protein tyrosine phosphatase receptor type K involved_in IDA (PMID:16849327) UniProt
UniProt
PMID:16849327 NCBI chr 6:127,968,785...128,520,599
Ensembl chr 6:127,968,785...128,520,616
JBrowse link
G RBX1 ring-box 1 involved_in ISS
EXP
(PMID:22118460) ComplexPortal PMID:22118460 GO_REF:0000114 NCBI chr22:40,951,378...40,973,309
Ensembl chr22:40,951,347...40,973,309
JBrowse link
G RHBDD1 rhomboid domain containing 1 involved_in ISS
IEA
UniProt
Ensembl
UniProt
GO_REF:0000024 GO_REF:0000107 NCBI chr 2:226,800,159...226,999,210
Ensembl chr 2:226,835,581...226,999,215
JBrowse link
G RHNO1 RAD9-HUS1-RAD1 interacting nuclear orphan 1 involved_in IDA (PMID:21659603) UniProt
UniProt
PMID:21659603 NCBI chr12:2,876,265...2,889,524
Ensembl chr12:2,876,258...2,889,524
JBrowse link
G RNF168 ring finger protein 168 acts_upstream_of_or_within ISO (MGI:5562615|PMID:24217620) MGI PMID:24217620 MGI:5562615 NCBI chr 3:196,468,783...196,503,768
Ensembl chr 3:196,468,783...196,503,768
JBrowse link
G RPL26 ribosomal protein L26 involved_in IMP (PMID:16213212) CAFA
CAFA
PMID:16213212 NCBI chr17:8,377,516...8,383,193
Ensembl chr17:8,377,516...8,383,213
JBrowse link
G RUVBL2 RuvB like AAA ATPase 2 involved_in IMP (PMID:18026119) UniProt
UniProt
PMID:18026119 NCBI chr19:48,993,448...49,015,995
Ensembl chr19:48,993,562...49,015,970
JBrowse link
G SDE2 SDE2 telomere maintenance homolog involved_in IDA (PMID:27906959) UniProt
UniProt
PMID:27906959 NCBI chr 1:225,982,702...225,999,343
Ensembl chr 1:225,982,702...225,999,343
JBrowse link
G SMPD1 sphingomyelin phosphodiesterase 1 involved_in IDA (PMID:17303575) UniProt
UniProt
PMID:17303575 NCBI chr11:6,390,474...6,394,996
Ensembl chr11:6,390,440...6,394,998
JBrowse link
G TAF1 TATA-box binding protein associated factor 1 involved_in IDA (PMID:24289924) ParkinsonsUK-UCL
ParkinsonsUK-UCL
PMID:24289924 NCBI chr  X:71,366,357...71,530,525
Ensembl chr  X:71,366,222...71,532,374
JBrowse link
G TMEM161A transmembrane protein 161A involved_in IDA (PMID:16551573) BHF-UCL
BHF-UCL
PMID:16551573 NCBI chr19:19,119,169...19,138,478
Ensembl chr19:19,119,169...19,138,513
JBrowse link
G TP53 tumor protein p53 involved_in
acts_upstream_of_or_within
IDA
IEA
ISO
(PMID:16213212), (PMID:23629966)
(MGI:3042308|PMID:14963330)
CAFA
CAFA
Ensembl
MGI
PMID:14963330 PMID:16213212 PMID:23629966 GO_REF:0000107 MGI:3042308 NCBI chr17:7,668,421...7,687,490
Ensembl chr17:7,661,779...7,687,538
JBrowse link
G TP53INP1 tumor protein p53 inducible nuclear protein 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:2153600|PMID:11557757) Ensembl
Ensembl
MGI
PMID:11557757 GO_REF:0000107 MGI:2153600 NCBI chr 8:94,925,972...94,949,378
Ensembl chr 8:94,925,972...94,949,378
JBrowse link
G TREX1 three prime repair exonuclease 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5014018|PMID:20511593) MGI
Ensembl
PMID:20511593 GO_REF:0000107 MGI:5014018 NCBI chr 3:48,465,830...48,467,645
Ensembl chr 3:48,465,811...48,467,645
JBrowse link
G TRIAP1 TP53 regulated inhibitor of apoptosis 1 involved_in IDA (PMID:15735003) BHF-UCL
BHF-UCL
PMID:15735003 NCBI chr12:120,443,964...120,446,384
Ensembl chr12:120,443,964...120,446,384
JBrowse link
G USP28 ubiquitin specific peptidase 28 involved_in IDA (PMID:17873522) UniProt
UniProt
PMID:17873522 NCBI chr11:113,797,875...113,875,572
Ensembl chr11:113,797,874...113,875,572
JBrowse link
G USP47 ubiquitin specific peptidase 47 involved_in ISS
IEA
(PMID:19966869) UniProt
UniProt
Ensembl
PMID:19966869 GO_REF:0000107 NCBI chr11:11,841,972...11,961,887
Ensembl chr11:11,841,423...11,961,887
JBrowse link
G YY1 YY1 transcription factor involved_in IMP (PMID:18026119) UniProt
UniProt
PMID:18026119 NCBI chr14:100,239,144...100,282,788
Ensembl chr14:100,238,298...100,282,788
JBrowse link
G ZBTB1 zinc finger and BTB domain containing 1 involved_in IMP (PMID:24657165) UniProt
UniProt
PMID:24657165 NCBI chr14:64,503,716...64,533,693
Ensembl chr14:64,503,712...64,533,690
JBrowse link
cellular response to UV-A term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CERS1 ceramide synthase 1 involved_in IDA (PMID:19800881) UniProt
UniProt
PMID:19800881 NCBI chr19:18,868,545...18,896,982
Ensembl chr19:18,868,545...18,896,727
JBrowse link
G MME membrane metalloendopeptidase involved_in IDA (PMID:20876573) UniProt
UniProt
PMID:20876573 NCBI chr 3:155,024,202...155,183,729
Ensembl chr 3:155,024,124...155,183,704
JBrowse link
G MMP1 matrix metallopeptidase 1 involved_in IDA (PMID:31380578) UniProt
UniProt
PMID:31380578 NCBI chr11:102,789,919...102,798,160
Ensembl chr11:102,789,401...102,798,160
JBrowse link
G MMP2 matrix metallopeptidase 2 involved_in IDA (PMID:31380578) UniProt
UniProt
PMID:31380578 NCBI chr16:55,478,830...55,506,691
Ensembl chr16:55,389,700...55,506,691
JBrowse link
G MMP3 matrix metallopeptidase 3 involved_in IDA (PMID:31380578) UniProt
UniProt
PMID:31380578 NCBI chr11:102,835,801...102,843,609
Ensembl chr11:102,835,801...102,843,609
JBrowse link
G MMP9 matrix metallopeptidase 9 involved_in IDA (PMID:31380578) UniProt
UniProt
PMID:31380578 NCBI chr20:46,008,908...46,016,561
Ensembl chr20:46,008,908...46,016,561
JBrowse link
G OPN1SW opsin 1, short wave sensitive involved_in IDA (PMID:31380578) UniProt
UniProt
PMID:31380578 NCBI chr 7:128,772,485...128,775,794
Ensembl chr 7:128,772,485...128,775,794
JBrowse link
G OPN3 opsin 3 involved_in IDA (PMID:31380578) UniProt
UniProt
PMID:31380578 NCBI chr 1:241,593,124...241,640,369
Ensembl chr 1:241,590,102...241,677,376
Ensembl chr 1:241,590,102...241,677,376
JBrowse link
G OPN5 opsin 5 involved_in IDA (PMID:31380578) UniProt
UniProt
PMID:31380578 NCBI chr 6:47,782,032...47,826,381
Ensembl chr 6:47,781,982...47,832,780
JBrowse link
G PPID peptidylprolyl isomerase D involved_in IMP (PMID:23220213) UniProt
UniProt
PMID:23220213 NCBI chr 4:158,709,127...158,723,396
Ensembl chr 4:158,709,127...158,723,396
JBrowse link
G TIMP1 TIMP metallopeptidase inhibitor 1 involved_in IDA (PMID:31380578) UniProt
UniProt
PMID:31380578 NCBI chr  X:47,582,436...47,586,789
Ensembl chr  X:47,582,408...47,586,789
JBrowse link
cellular response to UV-B term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CDKN1A cyclin dependent kinase inhibitor 1A involved_in ISS
IEA
UniProt
Ensembl
UniProt
GO_REF:0000024 GO_REF:0000107 NCBI chr 6:36,676,463...36,687,332
Ensembl chr 6:36,676,460...36,687,337
JBrowse link
G CRIP1 cysteine rich protein 1 involved_in IDA (PMID:20415737) UniProt
UniProt
PMID:20415737 NCBI chr14:105,486,886...105,488,947
Ensembl chr14:105,486,317...105,488,947
JBrowse link
G HYAL1 hyaluronidase 1 involved_in IDA (PMID:21699545) UniProt
UniProt
PMID:21699545 NCBI chr 3:50,299,893...50,312,381
Ensembl chr 3:50,299,890...50,312,381
JBrowse link
G HYAL2 hyaluronidase 2 involved_in IDA (PMID:21699545) UniProt
UniProt
PMID:21699545 NCBI chr 3:50,317,808...50,322,745
Ensembl chr 3:50,317,790...50,322,782
JBrowse link
G HYAL3 hyaluronidase 3 involved_in IDA (PMID:21699545) UniProt
UniProt
PMID:21699545 NCBI chr 3:50,292,832...50,299,405
Ensembl chr 3:50,292,831...50,299,405
JBrowse link
G MAP3K20 mitogen-activated protein kinase kinase kinase 20 involved_in IDA (PMID:35857590) UniProt PMID:35857590 NCBI chr 2:173,075,517...173,268,015
Ensembl chr 2:173,075,435...173,268,015
JBrowse link
G MAPK11 mitogen-activated protein kinase 11 involved_in IDA (PMID:35857590) UniProt PMID:35857590 NCBI chr22:50,263,713...50,270,380
Ensembl chr22:50,263,713...50,270,767
JBrowse link
G MAPK14 mitogen-activated protein kinase 14 involved_in IDA (PMID:35857590) UniProt PMID:35857590 NCBI chr 6:36,027,808...36,124,214
Ensembl chr 6:36,027,782...36,111,236
JBrowse link
G MFAP4 microfibril associated protein 4 involved_in IDA (PMID:22355679) BHF-UCL
BHF-UCL
PMID:22355679 NCBI chr17:19,383,445...19,387,190
Ensembl chr17:19,383,442...19,387,190
JBrowse link
G MME membrane metalloendopeptidase involved_in IDA (PMID:20876573) UniProt
UniProt
PMID:20876573 NCBI chr 3:155,024,202...155,183,729
Ensembl chr 3:155,024,124...155,183,704
JBrowse link
G NLRP1 NLR family pyrin domain containing 1 involved_in IMP (PMID:30096351) UniProt PMID:30096351 NCBI chr17:5,501,396...5,584,509
Ensembl chr17:5,499,415...5,619,424
JBrowse link
G RPL13A ribosomal protein L13a ISO RGD PMID:10483362 RGD:11036101 NCBI chr19:49,487,608...49,492,308
Ensembl chr19:49,487,510...49,493,057
JBrowse link
G RPL35 ribosomal protein L35 ISO RGD PMID:10483362 RGD:11036101 NCBI chr 9:124,857,883...124,861,957
Ensembl chr 9:124,857,880...124,861,981
JBrowse link
G STK11 serine/threonine kinase 11 involved_in IDA
IEA
(PMID:25329316) UniProt
Ensembl
UniProt
PMID:25329316 GO_REF:0000107 NCBI chr19:1,205,778...1,228,431
Ensembl chr19:1,177,558...1,228,431
JBrowse link
cellular response to UV-C term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CARD16 caspase recruitment domain family member 16 involved_in IDA (PMID:16920334) UniProt
UniProt
PMID:16920334 NCBI chr11:105,041,563...105,045,335
Ensembl chr11:105,041,326...105,101,431
JBrowse link
G EI24 EI24 autophagy associated transmembrane protein acts_upstream_of_or_within ISO (MGI:5543725|PMID:24014029) MGI PMID:24014029 MGI:5543725 NCBI chr11:125,569,477...125,584,684
Ensembl chr11:125,569,280...125,584,684
JBrowse link
G IMPACT impact RWD domain protein involved_in ISS
IEA
UniProt
UniProt
Ensembl
GO_REF:0000024 GO_REF:0000107 NCBI chr18:24,426,670...24,453,531
Ensembl chr18:24,426,634...24,453,531
JBrowse link
G MDM2 MDM2 proto-oncogene ISO RGD PMID:14558917 RGD:2317408 NCBI chr12:68,808,172...68,850,686
Ensembl chr12:68,808,177...68,845,544
JBrowse link
G PIERCE1 piercer of microtubule wall 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:4868626|PMID:21159655) Ensembl
Ensembl
MGI
PMID:21159655 GO_REF:0000107 MGI:4868626 NCBI chr 9:135,495,181...135,499,869
Ensembl chr 9:135,495,181...135,501,734
JBrowse link
G POLH DNA polymerase eta involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3695544|PMID:17114294) Ensembl
Ensembl
MGI
PMID:17114294 GO_REF:0000107 MGI:3695544 NCBI chr 6:43,576,185...43,620,523
Ensembl chr 6:43,576,185...43,620,523
JBrowse link
G POLI DNA polymerase iota acts_upstream_of_or_within ISO (MGI:3695544|PMID:17114294) MGI PMID:17114294 MGI:3695544 NCBI chr18:54,269,479...54,321,266
Ensembl chr18:54,269,517...54,321,266
JBrowse link
G ST20 suppressor of tumorigenicity 20 involved_in IMP (PMID:11857354) UniProt
UniProt
PMID:11857354 NCBI chr15:79,898,842...79,923,752
Ensembl chr15:79,898,840...79,923,702
JBrowse link
G TP53 tumor protein p53 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5543725|PMID:24014029) Ensembl
MGI
Ensembl
PMID:24014029 GO_REF:0000107 MGI:5543725 NCBI chr17:7,668,421...7,687,490
Ensembl chr17:7,661,779...7,687,538
JBrowse link
dark adaptation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GNB5 G protein subunit beta 5 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5507748|PMID:23555598) MGI
Ensembl
Ensembl
PMID:23555598 GO_REF:0000107 MGI:5507748 NCBI chr15:52,115,100...52,191,392
Ensembl chr15:52,115,100...52,191,392
JBrowse link
G RGS9 regulator of G protein signaling 9 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5507748|PMID:23555598) MGI
Ensembl
Ensembl
PMID:23555598 GO_REF:0000107 MGI:5507748 NCBI chr17:65,137,370...65,227,703
Ensembl chr17:65,100,812...65,227,703
JBrowse link
G TENT2 terminal nucleotidyltransferase 2 involved_in IEA
ISO
Ensembl
RGD
Ensembl
PMID:23700402 GO_REF:0000107 RGD:11041783 NCBI chr 5:79,612,441...79,688,246
Ensembl chr 5:79,612,120...79,688,246
JBrowse link
DNA synthesis involved in UV-damage excision repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G POLA1 DNA polymerase alpha 1, catalytic subunit NOT|involved_in IMP (PMID:1730053) UniProt
UniProt
PMID:1730053 NCBI chr  X:24,693,918...24,996,986
Ensembl chr  X:24,693,873...24,996,986
JBrowse link
G POLD3 DNA polymerase delta 3, accessory subunit involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr11:74,592,582...74,669,341
Ensembl chr11:74,493,851...74,669,117
JBrowse link
G TREX1 three prime repair exonuclease 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5562498|PMID:23993650) Ensembl
Ensembl
MGI
PMID:23993650 GO_REF:0000107 MGI:5562498 NCBI chr 3:48,465,830...48,467,645
Ensembl chr 3:48,465,811...48,467,645
JBrowse link
negative regulation of transcription from RNA polymerase II promoter in response to UV-induced DNA damage term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NEDD4 NEDD4 E3 ubiquitin protein ligase involved_in IMP (PMID:17996703) BHF-UCL
BHF-UCL
PMID:17996703 NCBI chr15:55,826,917...55,993,612
Ensembl chr15:55,826,922...55,993,660
JBrowse link
phototransduction, UV term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G OPN5 opsin 5 involved_in IMP
IEA
(PMID:22043319) UniProt
UniProt
Ensembl
PMID:22043319 GO_REF:0000107 NCBI chr 6:47,782,032...47,826,381
Ensembl chr 6:47,781,982...47,832,780
JBrowse link
red, far-red light phototransduction term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G RHO rhodopsin ISO RGD PMID:2525480 RGD:6893558 NCBI chr 3:129,528,639...129,535,344
Ensembl chr 3:129,528,639...129,535,344
JBrowse link
regulation of mRNA stability involved in cellular response to UV term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NPM1 nucleophosmin 1 involved_in IMP (PMID:12080348) UniProt
UniProt
PMID:12080348 NCBI chr 5:171,387,116...171,410,900
Ensembl chr 5:171,387,116...171,411,810
JBrowse link
regulation of rhodopsin mediated signaling pathway term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AIPL1 aryl hydrocarbon receptor interacting protein like 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3054134|PMID:15365178)
(MGI:3054118|PMID:15365173)
Ensembl
Ensembl
MGI
PMID:15365173 PMID:15365178 GO_REF:0000107 MGI:3054118 MGI:3054134 NCBI chr17:6,423,738...6,435,121
Ensembl chr17:6,393,693...6,435,199
JBrowse link
G CAMKMT calmodulin-lysine N-methyltransferase involved_in TAS Reactome
Reactome
Reactome:R-HSA-2514859 NCBI chr 2:44,361,947...44,772,592
Ensembl chr 2:44,361,947...44,772,592
JBrowse link
G GNAT1 G protein subunit alpha transducin 1 involved_in TAS Reactome
Reactome
Reactome:R-HSA-2514859 NCBI chr 3:50,191,610...50,197,696
Ensembl chr 3:50,191,610...50,197,696
JBrowse link
G GRK1 G protein-coupled receptor kinase 1 involved_in IDA
IEA
TAS
(PMID:15946941) UniProt
InterPro
Reactome
UniProt
Reactome
InterPro
PMID:15946941 GO_REF:0000002 Reactome:R-HSA-2514859 NCBI chr13:113,648,199...113,737,736
Ensembl chr13:113,667,219...113,737,736
JBrowse link
G GRK4 G protein-coupled receptor kinase 4 involved_in TAS Reactome
Reactome
Reactome:R-HSA-2514859 NCBI chr 4:2,963,571...3,040,760
Ensembl chr 4:2,963,571...3,040,760
JBrowse link
G GRK7 G protein-coupled receptor kinase 7 involved_in TAS Reactome
Reactome
Reactome:R-HSA-2514859 NCBI chr 3:141,749,984...141,819,352
Ensembl chr 3:141,763,408...141,819,352
JBrowse link
G GUCY2D guanylate cyclase 2D, retinal involved_in TAS Reactome
Reactome
Reactome:R-HSA-2514859 NCBI chr17:8,002,615...8,020,342
Ensembl chr17:8,002,615...8,020,342
JBrowse link
G GUCY2F guanylate cyclase 2F, retinal involved_in TAS Reactome
Reactome
Reactome:R-HSA-2514859 NCBI chr  X:109,372,906...109,482,086
Ensembl chr  X:109,372,906...109,482,086
JBrowse link
G NMT1 N-myristoyltransferase 1 involved_in TAS Reactome
Reactome
Reactome:R-HSA-2514859 NCBI chr17:45,061,317...45,109,016
Ensembl chr17:44,957,992...45,109,016
JBrowse link
G NMT2 N-myristoyltransferase 2 involved_in TAS Reactome
Reactome
Reactome:R-HSA-2514859 NCBI chr10:15,105,700...15,168,693
Ensembl chr10:15,102,584...15,168,693
JBrowse link
regulation of transcription from RNA polymerase II promoter in response to UV-induced DNA damage term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CHEK1 checkpoint kinase 1 involved_in ISS
IEA
UniProt
Ensembl
UniProt
GO_REF:0000024 GO_REF:0000107 NCBI chr11:125,625,136...125,681,124
Ensembl chr11:125,625,163...125,676,255
JBrowse link
regulation of translation involved in cellular response to UV term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G RPL26 ribosomal protein L26 involved_in IMP (PMID:16213212) CAFA
CAFA
PMID:16213212 NCBI chr17:8,377,516...8,383,193
Ensembl chr17:8,377,516...8,383,213
JBrowse link
rhodopsin mediated signaling pathway term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GNAT1 G protein subunit alpha transducin 1 involved_in ISO
IEA
RGD
Ensembl
Ensembl
PMID:11931744 GO_REF:0000107 RGD:1599009 NCBI chr 3:50,191,610...50,197,696
Ensembl chr 3:50,191,610...50,197,696
JBrowse link
G GRK1 G protein-coupled receptor kinase 1 involved_in TAS (PMID:1656454), (PMID:9147475)
(PMID:1656454), (PMID:9147475), (PMID:9478965)
PINC
UniProt
PMID:1656454 PMID:9147475 PMID:9478965 NCBI chr13:113,648,199...113,737,736
Ensembl chr13:113,667,219...113,737,736
JBrowse link
G OPN4 opsin 4 acts_upstream_of_or_within ISO (MGI:4438311|PMID:19793992) MGI PMID:19793992 MGI:4438311 NCBI chr10:86,654,547...86,666,460
Ensembl chr10:86,654,518...86,666,460
JBrowse link
G PCP2 Purkinje cell protein 2 acts_upstream_of_or_within ISO (MGI:3817370|PMID:18768681) MGI PMID:18768681 MGI:3817370 NCBI chr19:7,631,615...7,637,006
Ensembl chr19:7,631,611...7,633,719
JBrowse link
G RHO rhodopsin involved_in ISS
TAS
ISO
(PMID:8107847) UniProt
UniProt
PINC
RGD
PMID:8107847 PMID:8814134 GO_REF:0000024 RGD:6893595 NCBI chr 3:129,528,639...129,535,344
Ensembl chr 3:129,528,639...129,535,344
JBrowse link
G SAG S-antigen visual arrestin involved_in TAS (PMID:2550422), (PMID:7670478) PINC
PINC
PMID:2550422 PMID:7670478 NCBI chr 2:233,307,816...233,347,055
Ensembl chr 2:233,307,816...233,347,055
JBrowse link
UV-damage excision repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACTR5 actin related protein 5 involved_in IMP (PMID:20855601) UniProt
UniProt
PMID:20855601 NCBI chr20:38,748,460...38,772,520
Ensembl chr20:38,748,460...38,772,520
JBrowse link
G CUL4B cullin 4B involved_in IDA (PMID:22334663) UniProt
UniProt
PMID:22334663 NCBI chr  X:120,523,858...120,575,532
Ensembl chr  X:120,505,920...120,604,074
JBrowse link
G DDB1 damage specific DNA binding protein 1 involved_in IDA (PMID:14751237), (PMID:22334663) UniProt
UniProt
PMID:14751237 PMID:22334663 NCBI chr11:61,299,451...61,333,105
Ensembl chr11:61,299,451...61,342,596
JBrowse link
G DDB2 damage specific DNA binding protein 2 involved_in IDA (PMID:14751237), (PMID:22334663) UniProt
ComplexPortal
PMID:14751237 PMID:22334663 NCBI chr11:47,214,454...47,239,217
Ensembl chr11:47,214,465...47,239,217
JBrowse link
G ERCC1 ERCC excision repair 1, endonuclease non-catalytic subunit involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr19:45,407,334...45,451,547
Ensembl chr19:45,407,334...45,478,828
JBrowse link
G H2AC25 H2A clustered histone 25 involved_in IMP (PMID:22334663) UniProt
UniProt
PMID:22334663 NCBI chr 1:228,457,364...228,457,873
Ensembl chr 1:228,434,777...228,457,873
JBrowse link
G INO80 INO80 complex ATPase subunit involved_in IMP (PMID:20855601) UniProt
UniProt
PMID:20855601 NCBI chr15:40,978,880...41,116,280
Ensembl chr15:40,978,880...41,116,280
JBrowse link
G MC1R melanocortin 1 receptor involved_in IDA (PMID:18292087) BHF-UCL
BHF-UCL
PMID:18292087 NCBI chr16:89,918,862...89,920,972
Ensembl chr16:89,912,119...89,920,973
JBrowse link
G SIRT1 sirtuin 1 involved_in IMP (PMID:20670893) CACAO
CACAO
PMID:20670893 NCBI chr10:67,884,656...67,918,390
Ensembl chr10:67,884,656...67,918,390
JBrowse link
G XPA XPA, DNA damage recognition and repair factor involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr 9:97,654,398...97,697,340
Ensembl chr 9:97,674,909...97,697,340
JBrowse link
G XPC XPC complex subunit, DNA damage recognition and repair factor involved_in IDA
IEA
(PMID:8077226) CACAO
Ensembl
CACAO
PMID:8077226 GO_REF:0000107 NCBI chr 3:14,145,147...14,178,601
Ensembl chr 3:14,145,147...14,178,621
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19769
    response to stimulus 10195
      response to abiotic stimulus 1687
        response to radiation 597
          response to light stimulus 406
            cellular response to light stimulus 144
              cellular response to UV + 106
              cellular response to blue light + 2
              cellular response to light intensity + 6
              cellular response to red or far red light + 1
              rhodopsin mediated signaling pathway + 16
Path 2
Term Annotations click to browse term
  biological_process 19769
    cellular process 18047
      cellular response to stimulus 8433
        cellular response to environmental stimulus 473
          cellular response to abiotic stimulus 473
            cellular response to radiation 220
              cellular response to light stimulus 144
                cellular response to UV + 106
                cellular response to blue light + 2
                cellular response to light intensity + 6
                cellular response to red or far red light + 1
                rhodopsin mediated signaling pathway + 16
paths to the root