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ONTOLOGY REPORT - ANNOTATIONS


Term:cellular response to low-density lipoprotein particle stimulus
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Accession:GO:0071404 term browser browse the term
Definition:Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a low-density lipoprotein particle stimulus.
Synonyms:broad_synonym: response to low density lipoprotein particle;   response to low-density lipoprotein particle stimulus
 alt_id: GO:0055098



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cellular response to low-density lipoprotein particle stimulus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ABCA1 ATP binding cassette subfamily A member 1 involved_in NAS (PMID:15358760) BHF-UCL PMID:15358760 NCBI chr 9:104,781,006...104,928,155
Ensembl chr 9:104,781,006...104,928,155
JBrowse link
G CASR calcium sensing receptor involved_in ISO
IEA
oxidized LDL RGD
Ensembl
PMID:22083546 GO_REF:0000107 RGD:7205681 NCBI chr 3:122,183,668...122,291,629
Ensembl chr 3:122,183,668...122,291,629
JBrowse link
G CD36 CD36 molecule (CD36 blood group) involved_in ISS
IEA
UniProt
Ensembl
GO_REF:0000024 GO_REF:0000107 NCBI chr 7:80,602,207...80,679,274
Ensembl chr 7:80,369,575...80,679,277
JBrowse link
G CD81 CD81 molecule involved_in IEA
ISS
Ensembl
UniProt
GO_REF:0000024 GO_REF:0000107 NCBI chr11:2,376,180...2,397,397
Ensembl chr11:2,376,177...2,397,802
JBrowse link
G CD9 CD9 molecule involved_in ISS
IEA
UniProt
Ensembl
GO_REF:0000024 GO_REF:0000107 NCBI chr12:6,199,946...6,238,266
Ensembl chr12:6,199,715...6,238,271
JBrowse link
G CES1 carboxylesterase 1 involved_in IMP (PMID:18762277) ARUK-UCL PMID:18762277 NCBI chr16:55,802,851...55,833,096
Ensembl chr16:55,802,851...55,833,337
JBrowse link
G F3 coagulation factor III, tissue factor ISO RGD PMID:10190887 RGD:2313771 NCBI chr 1:94,529,173...94,541,759
Ensembl chr 1:94,529,173...94,541,759
JBrowse link
G FCER1G Fc epsilon receptor Ig involved_in ISS UniProt GO_REF:0000024 NCBI chr 1:161,215,295...161,219,245
Ensembl chr 1:161,215,234...161,220,699
JBrowse link
G FGF21 fibroblast growth factor 21 involved_in ISO
IEA
RGD
Ensembl
PMID:22166524 GO_REF:0000107 RGD:10401877 NCBI chr19:48,755,524...48,758,330
Ensembl chr19:48,755,524...48,758,333
JBrowse link
G HMGCS1 3-hydroxy-3-methylglutaryl-CoA synthase 1 ISO RGD PMID:16260 RGD:2302235 NCBI chr 5:43,287,470...43,313,412
Ensembl chr 5:43,287,470...43,313,512
JBrowse link
G ITGB1 integrin subunit beta 1 involved_in ISS
IEA
UniProt
Ensembl
GO_REF:0000024 GO_REF:0000107 NCBI chr10:32,900,318...32,958,230
Ensembl chr10:32,887,273...33,005,792
JBrowse link
G ITGB2 integrin subunit beta 2 involved_in ISS UniProt GO_REF:0000024 NCBI chr21:44,885,953...44,928,815
Ensembl chr21:44,885,953...44,931,989
JBrowse link
G LDLR low density lipoprotein receptor involved_in IMP (PMID:6299582) BHF-UCL PMID:6299582 NCBI chr19:11,089,463...11,133,820
Ensembl chr19:11,089,418...11,133,820
JBrowse link
G MFN2 mitofusin 2 ISO RGD PMID:26062420 RGD:13204747 NCBI chr 1:11,980,444...12,013,508
Ensembl chr 1:11,980,181...12,015,211
JBrowse link
G MIR135A1 microRNA 135a-1 involved_in IGI (PMID:31545249) BHF-UCL PMID:31545249 NCBI chr 3:52,294,219...52,294,308
Ensembl chr 3:52,294,219...52,294,308
JBrowse link
G MIR135A2 microRNA 135a-2 involved_in IGI (PMID:31545249) BHF-UCL PMID:31545249 NCBI chr12:97,563,812...97,563,911
Ensembl chr12:97,563,812...97,563,911
JBrowse link
G MIR302A microRNA 302a involved_in IDA (PMID:25524771) BHF-UCL PMID:25524771 NCBI chr 4:112,648,183...112,648,251
Ensembl chr 4:112,648,183...112,648,251
JBrowse link
G MIR4286 microRNA 4286 involved_in IMP (PMID:32141990) BHF-UCL PMID:32141990 NCBI chr 8:10,666,978...10,667,070
Ensembl chr 8:10,666,978...10,667,070
JBrowse link
G MIR758 microRNA 758 involved_in IDA (PMID:21885853) BHF-UCL PMID:21885853 NCBI chr14:101,026,020...101,026,107
Ensembl chr14:101,026,020...101,026,107
JBrowse link
G MIR92A1 microRNA 92a-1 involved_in IDA (PMID:24255059) BHF-UCL PMID:24255059 NCBI chr13:91,351,314...91,351,391
Ensembl chr13:91,351,314...91,351,391
JBrowse link
G MIR92A2 microRNA 92a-2 involved_in IDA (PMID:24255059) BHF-UCL PMID:24255059 NCBI chr  X:134,169,538...134,169,612
Ensembl chr  X:134,169,538...134,169,612
JBrowse link
G MMP9 matrix metallopeptidase 9 ISO RGD PMID:19554388 RGD:2325827 NCBI chr20:46,008,908...46,016,561
Ensembl chr20:46,008,908...46,016,561
JBrowse link
G NOS3 nitric oxide synthase 3 ISO RGD PMID:29161690 RGD:13504739 NCBI chr 7:150,991,017...151,014,588
Ensembl chr 7:150,991,017...151,014,588
JBrowse link
G NPC1 NPC intracellular cholesterol transporter 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3706740|PMID:10787428) MGI
Ensembl
PMID:10787428 GO_REF:0000107 MGI:3706740 NCBI chr18:23,506,184...23,586,506
Ensembl chr18:23,506,184...23,586,506
JBrowse link
G PPARG peroxisome proliferator activated receptor gamma involved_in IDA (PMID:9568716) BHF-UCL PMID:9568716 NCBI chr 3:12,287,368...12,434,344
Ensembl chr 3:12,287,368...12,434,356
JBrowse link
G SERPINE1 serpin family E member 1 ISO RGD PMID:11057874 RGD:8547812 NCBI chr 7:101,127,104...101,139,247
Ensembl chr 7:101,127,104...101,139,247
JBrowse link
G SOCS5 suppressor of cytokine signaling 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 2:46,698,937...46,763,129
Ensembl chr 2:46,698,952...46,780,245
JBrowse link
G SREBF2 sterol regulatory element binding transcription factor 2 involved_in IEP (PMID:15358760) BHF-UCL PMID:15358760 NCBI chr22:41,833,105...41,907,305
Ensembl chr22:41,833,105...41,907,306
JBrowse link
G SYK spleen associated tyrosine kinase involved_in IEA
ISS
Ensembl
UniProt
GO_REF:0000024 GO_REF:0000107 NCBI chr 9:90,801,600...90,898,549
Ensembl chr 9:90,801,787...90,898,549
JBrowse link
G TGFB1 transforming growth factor beta 1 involved_in IMP (PMID:32141990) BHF-UCL PMID:32141990 NCBI chr19:41,330,323...41,353,922
Ensembl chr19:41,301,587...41,353,922
JBrowse link
cellular response to oxidised low-density lipoprotein particle stimulus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ADTRP androgen dependent TFPI regulating protein involved_in IMP (PMID:28341552) BHF-UCL PMID:28341552 NCBI chr 6:11,713,523...11,778,803
Ensembl chr 6:11,712,054...11,807,046
JBrowse link
G AKT1 AKT serine/threonine kinase 1 involved_in IMP (PMID:28341552) BHF-UCL PMID:28341552 NCBI chr14:104,769,349...104,795,748
Ensembl chr14:104,769,349...104,795,751
JBrowse link
G CD36 CD36 molecule (CD36 blood group) involved_in IMP (PMID:27607416) ARUK-UCL PMID:27607416 NCBI chr 7:80,602,207...80,679,274
Ensembl chr 7:80,369,575...80,679,277
JBrowse link
G CD68 CD68 molecule involved_in ISS ARUK-UCL GO_REF:0000024 NCBI chr17:7,579,638...7,582,111
Ensembl chr17:7,579,491...7,582,111
JBrowse link
G MIA3 MIA SH3 domain ER export factor 3 involved_in IMP (PMID:28341552) BHF-UCL PMID:28341552 NCBI chr 1:222,618,097...222,668,007
Ensembl chr 1:222,618,097...222,668,007
JBrowse link
G MIR146A microRNA 146a involved_in IDA (PMID:21329689) ARUK-UCL PMID:21329689 NCBI chr 5:160,485,352...160,485,450
Ensembl chr 5:160,485,352...160,485,450
JBrowse link
G MIR20A microRNA 20a involved_in IDA (PMID:29653364) ARUK-UCL PMID:29653364 NCBI chr13:91,351,065...91,351,135
Ensembl chr13:91,351,065...91,351,135
JBrowse link
G MYD88 MYD88 innate immune signal transduction adaptor involved_in ISS
IEA
ARUK-UCL
Ensembl
GO_REF:0000024 GO_REF:0000107 NCBI chr 3:38,138,661...38,143,022
Ensembl chr 3:38,138,552...38,143,024
JBrowse link
G SMPD3 sphingomyelin phosphodiesterase 3 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:4440357|PMID:20352118) MGI
Ensembl
PMID:20352118 GO_REF:0000107 MGI:4440357 NCBI chr16:68,358,327...68,448,508
Ensembl chr16:68,358,327...68,448,508
JBrowse link
G TICAM1 TIR domain containing adaptor molecule 1 involved_in IEA
ISS
Ensembl
ARUK-UCL
GO_REF:0000024 GO_REF:0000107 NCBI chr19:4,815,932...4,831,712
Ensembl chr19:4,815,932...4,831,712
JBrowse link
G TLR4 toll like receptor 4 involved_in IDA
IEA
ISS
(PMID:20037584) ComplexPortal
Ensembl
ARUK-UCL
PMID:20037584 GO_REF:0000024 GO_REF:0000107 NCBI chr 9:117,704,403...117,724,735
Ensembl chr 9:117,704,175...117,724,735
JBrowse link
G TLR6 toll like receptor 6 involved_in IDA
ISS
(PMID:20037584) ComplexPortal
ARUK-UCL
PMID:20037584 GO_REF:0000024 NCBI chr 4:38,822,897...38,868,390
Ensembl chr 4:38,822,897...38,856,817
JBrowse link
G TREM2 triggering receptor expressed on myeloid cells 2 involved_in IDA (PMID:31902528) ARUK-UCL PMID:31902528 NCBI chr 6:41,158,508...41,163,116
Ensembl chr 6:41,158,506...41,163,186
JBrowse link
G TXNIP thioredoxin interacting protein involved_in TAS (PMID:29653364) ARUK-UCL PMID:29653364 NCBI chr 1:145,992,435...145,996,579
Ensembl chr 1:145,992,435...145,996,579
JBrowse link
low-density lipoprotein particle mediated signaling term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G APP amyloid beta precursor protein involved_in IDA (PMID:26005850) ARUK-UCL PMID:26005850 NCBI chr21:25,880,550...26,171,128
Ensembl chr21:25,880,535...26,171,128
JBrowse link
G CD36 CD36 molecule (CD36 blood group) involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:80,602,207...80,679,274
Ensembl chr 7:80,369,575...80,679,277
JBrowse link
G CDH13 cadherin 13 involved_in IDA (PMID:16013438) BHF-UCL PMID:16013438 NCBI chr16:82,626,969...83,800,640
Ensembl chr16:82,626,965...83,800,640
JBrowse link
G LPL lipoprotein lipase involved_in IMP (PMID:25149060) BHF-UCL PMID:25149060 NCBI chr 8:19,939,253...19,967,259
Ensembl chr 8:19,901,717...19,967,259
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19761
    cellular process 18444
      cellular response to stimulus 8443
        cellular response to lipoprotein particle stimulus 52
          cellular response to low-density lipoprotein particle stimulus 46
            cellular response to oxidised low-density lipoprotein particle stimulus 14
            low-density lipoprotein particle mediated signaling 4
Path 2
Term Annotations click to browse term
  biological_process 19761
    response to stimulus 10241
      response to chemical 5161
        response to nitrogen compound 1710
          response to organonitrogen compound 1588
            response to lipoprotein particle 47
              cellular response to low-density lipoprotein particle stimulus 46
                cellular response to oxidised low-density lipoprotein particle stimulus 14
                low-density lipoprotein particle mediated signaling 4
paths to the root