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ONTOLOGY REPORT - ANNOTATIONS


Term:cellular response to vitamin
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Accession:GO:0071295 term browser browse the term
Definition:Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a vitamin stimulus.



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cellular response to vitamin term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BRIP1 BRCA1 interacting helicase 1 ISO RGD PMID:16771696 RGD:2326085 NCBI chr12:36,498,138...36,639,847
Ensembl chr12:36,498,205...36,635,973
JBrowse link
cellular response to folic acid term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FOLR1 folate receptor alpha involved_in IEA GOC
Ensembl
GOC
GO_REF:0000107 GO_REF:0000108 NCBI chr 9:6,753,513...6,760,433
Ensembl chr 9:6,757,040...6,760,402
JBrowse link
G FOLR1 folate receptor alpha involved_in IEA GOC
GOC
Ensembl
GO_REF:0000107 GO_REF:0000108 NCBI chr 9:6,746,014...6,750,431
Ensembl chr 9:6,746,007...6,760,433
JBrowse link
G FOLR2 folate receptor 2 (fetal) involved_in IEA GOC
GOC
GO_REF:0000108 NCBI chr 9:6,785,308...6,790,466
Ensembl chr 9:6,785,303...6,790,465
JBrowse link
cellular response to L-ascorbic acid term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ELN elastin ISO RGD PMID:2859894 RGD:9585689 NCBI chr 3:11,214,194...11,245,891
Ensembl chr 3:11,214,205...11,244,897
JBrowse link
G LEP leptin ISO RGD PMID:20400526 RGD:5128594 NCBI chr18:20,106,867...20,124,071
Ensembl chr18:20,106,868...20,123,323
JBrowse link
cellular response to menadione term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DCPS decapping enzyme, scavenger involved_in ISS
IEA
UniProt
UniProt
Ensembl
GO_REF:0000024 GO_REF:0000107 NCBI chr 9:53,400,750...53,437,161
Ensembl chr 9:53,400,755...53,437,548
JBrowse link
G NDOR1 NADPH dependent diflavin oxidoreductase 1 involved_in IEA Ensembl GO_REF:0000107
cellular response to vitamin A term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LTC4S leukotriene C4 synthase ISO RGD PMID:12767051 RGD:724432 NCBI chr 2:78,799,446...78,802,281
Ensembl chr 2:78,799,449...78,802,285
JBrowse link
cellular response to vitamin B1 term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G MDM2 MDM2 proto-oncogene ISO RGD PMID:15656374 RGD:2317394 NCBI chr 5:33,105,717...33,137,602
Ensembl chr 5:33,105,759...33,137,739
JBrowse link
cellular response to vitamin B3 term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SIRT1 sirtuin 1 ISO RGD PMID:23555824 RGD:10047117 NCBI chr14:71,091,167...71,126,351
Ensembl chr14:71,091,167...71,123,297
JBrowse link
cellular response to vitamin D term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ADAMTS1 ADAM metallopeptidase with thrombospondin type 1 motif 1 ISO RGD PMID:11108265 RGD:9681746 NCBI chr13:190,277,175...190,285,957
Ensembl chr13:190,276,430...190,286,214
JBrowse link
G ATP2B1 ATPase plasma membrane Ca2+ transporting 1 ISO RGD PMID:11277270 RGD:2317730 NCBI chr 5:92,935,688...93,061,406
Ensembl chr 5:92,935,694...93,061,405
JBrowse link
G CASR calcium sensing receptor ISO 1,25-dihydroxycholecalciferol (calcitriol) RGD PMID:21940515 RGD:7205697 NCBI chr13:138,279,785...138,364,934
Ensembl chr13:138,280,364...138,364,252
JBrowse link
G CYP24A1 cytochrome P450 family 24 subfamily A member 1 ISO RGD PMID:28104492 RGD:151665513 NCBI chr17:55,110,546...55,130,328
Ensembl chr17:55,110,590...55,130,363
JBrowse link
G FES FES proto-oncogene, tyrosine kinase involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 7:53,472,947...53,485,084
Ensembl chr 7:53,472,947...53,485,082
JBrowse link
G FGF23 fibroblast growth factor 23 ISO RGD PMID:23263654 RGD:10044209 NCBI chr 5:66,028,591...66,038,078
Ensembl chr 5:66,028,776...66,038,740
JBrowse link
G FZD1 frizzled class receptor 1 ISO RGD PMID:1334084 RGD:61590 NCBI chr 9:71,346,994...71,356,488
Ensembl chr 9:71,349,988...71,352,104
JBrowse link
G FZD2 frizzled class receptor 2 ISO RGD PMID:1334084 RGD:61590 NCBI chr12:18,740,417...18,742,301
Ensembl chr12:18,740,653...18,742,420
JBrowse link
G GDAP1 ganglioside induced differentiation associated protein 1 ISO RGD PMID:25449168 RGD:12738378 NCBI chr 4:61,577,413...61,596,106
Ensembl chr 4:61,577,112...61,596,049
JBrowse link
G IL15 interleukin 15 ISO RGD PMID:15637289 RGD:2311387 NCBI chr 8:85,666,963...85,740,980
Ensembl chr 8:85,667,321...85,678,461
JBrowse link
G ITGB1 integrin subunit beta 1 ISO calcitriol RGD PMID:20304064 RGD:2325261 NCBI chr10:56,078,393...56,130,608
Ensembl chr10:56,078,396...56,173,326
JBrowse link
G KDM6A lysine demethylase 6A ISO RGD PMID:31907922 RGD:151665135 NCBI chr  X:39,953,764...40,154,197
Ensembl chr  X:39,953,814...40,154,029
JBrowse link
G LTBP1 latent transforming growth factor beta binding protein 1 ISO RGD PMID:10025676 RGD:10412059 NCBI chr 3:106,300,748...106,724,538
Ensembl chr 3:106,300,750...106,724,737
JBrowse link
G MIR125B-1 microRNA mir-125b-1 involved_in ISO (PMID:28389358) ARUK-UCL PMID:28389358 NCBI chr 9:49,109,435...49,109,514
Ensembl chr 9:49,109,435...49,109,514
JBrowse link
G MMP1 matrix metallopeptidase 1 ISO RGD PMID:22064970 RGD:7207281 NCBI chr 9:33,411,738...33,420,205
Ensembl chr 9:33,411,065...33,420,076
JBrowse link
G NOS2 nitric oxide synthase 2 ISO RGD PMID:18534083 RGD:4891908 NCBI chr12:44,174,944...44,219,875
Ensembl chr12:44,174,948...44,218,146
JBrowse link
G PDIA3 protein disulfide isomerase family A member 3 ISO RGD PMID:15862831 RGD:9999173 NCBI chr 1:127,786,174...127,814,096
Ensembl chr 1:127,785,772...127,814,196
JBrowse link
G PENK proenkephalin ISO RGD PMID:8584038 RGD:10003035 NCBI chr 4:75,525,497...75,530,403
Ensembl chr 4:75,525,555...75,530,876
JBrowse link
G PHEX phosphate regulating endopeptidase X-linked ISO RGD PMID:15337762 RGD:11556251 NCBI chr  X:18,199,396...18,420,985
Ensembl chr  X:18,203,174...18,418,004
JBrowse link
G PTN pleiotrophin ISO RGD PMID:21153232 RGD:9831436 NCBI chr18:12,219,708...12,309,045
Ensembl chr18:12,219,787...12,309,044
JBrowse link
G SFRP1 secreted frizzled related protein 1 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr17:10,436,414...10,489,773
Ensembl chr17:10,436,426...10,489,748
JBrowse link
G SULT2A1 sulfotransferase family 2A member 1 ISO RGD PMID:14978251 RGD:2317006 NCBI chr 6:53,525,496...53,536,723
Ensembl chr 6:53,524,787...53,536,718
JBrowse link
G TNC tenascin C ISO RGD PMID:10502285 RGD:4889620 NCBI chr 1:255,533,235...255,630,381
Ensembl chr 1:255,533,238...255,630,376
JBrowse link
G TREM1 triggering receptor expressed on myeloid cells 1 ISO RGD PMID:29331667 RGD:127284861 NCBI chr 7:36,510,253...36,531,796
Ensembl chr 7:36,510,253...36,531,796
JBrowse link
G VDR vitamin D receptor ISO RGD PMID:9753201 RGD:8158092 NCBI chr 5:78,205,807...78,266,505
Ensembl chr 5:78,205,810...78,266,475
JBrowse link
cellular response to vitamin E term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G COL1A1 collagen type I alpha 1 chain ISO RGD PMID:23722449 RGD:8552711 NCBI chr12:26,379,087...26,397,180
Ensembl chr12:26,379,090...26,397,004
JBrowse link
G COL2A1 collagen type II alpha 1 chain ISO RGD PMID:23722449 RGD:8552711 NCBI chr 5:78,350,131...78,380,893
Ensembl chr 5:78,350,137...78,380,718
JBrowse link
G PAWR pro-apoptotic WT1 regulator ISO RGD PMID:10428045 RGD:9835341 NCBI chr 5:101,693,145...101,797,842
Ensembl chr 5:101,693,246...101,797,838
JBrowse link
G PPARG peroxisome proliferator activated receptor gamma ISO RGD PMID:11752099 RGD:8553036 NCBI chr13:68,301,566...68,433,951
Ensembl chr13:68,302,322...68,433,944
JBrowse link
cellular response to vitamin K term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CCL5 C-C motif chemokine ligand 5 ISO menadione (K3) RGD PMID:19291322 RGD:4889997 NCBI chr12:39,652,731...39,659,121
Ensembl chr12:39,648,598...39,659,118
JBrowse link
G GAS6 growth arrest specific 6 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr11:78,848,797...78,880,733
Ensembl chr11:78,848,797...78,881,284
JBrowse link
G POSTN periostin involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr11:13,225,183...13,258,973
Ensembl chr11:13,224,959...13,258,978
JBrowse link
negative regulation of vitamin D receptor signaling pathway term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G KANK2 KN motif and ankyrin repeat domains 2 involved_in IBA
IEA
(PMID:21873635) GO_Central
Ensembl
GO_Central
Ensembl
PMID:21873635 GO_REF:0000107 NCBI chr 2:69,896,116...69,925,194
Ensembl chr 2:69,896,120...69,924,919
JBrowse link
G SNAI2 snail family transcriptional repressor 2 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 4:79,264,880...79,268,475
Ensembl chr 4:79,264,880...79,268,475
JBrowse link
positive regulation of vitamin D receptor signaling pathway term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CYP27B1 cytochrome P450 family 27 subfamily B member 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:23,053,129...23,058,865
Ensembl chr 5:23,053,892...23,058,470
JBrowse link
G METTL1 methyltransferase 1, tRNA methylguanosine involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:23,059,001...23,063,025
Ensembl chr 5:23,058,982...23,062,991
JBrowse link
G MN1 MN1 proto-oncogene, transcriptional regulator involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr14:45,093,660...45,142,476
Ensembl chr14:45,096,485...45,140,570
JBrowse link
G RXRA retinoid X receptor alpha involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:273,698,842...273,797,622
Ensembl chr 1:273,705,505...273,797,620
JBrowse link
G SNW1 SNW domain containing 1 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 7:100,718,298...100,749,414
Ensembl chr 7:100,718,036...100,749,356
JBrowse link
G VDR vitamin D receptor involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 5:78,205,807...78,266,505
Ensembl chr 5:78,205,810...78,266,475
JBrowse link
regulation of vitamin D receptor signaling pathway term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G MED1 mediator complex subunit 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3655015|PMID:16324150) Ensembl
Ensembl
MGI
PMID:16324150 GO_REF:0000107 MGI:3655015 NCBI chr12:22,830,405...22,872,420
Ensembl chr12:22,841,205...22,872,409
JBrowse link
G SNW1 SNW domain containing 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:100,718,298...100,749,414
Ensembl chr 7:100,718,036...100,749,356
JBrowse link
G TRIM24 tripartite motif containing 24 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3776949|PMID:18287084) Ensembl
Ensembl
MGI
PMID:18287084 GO_REF:0000107 MGI:3776949 NCBI chr18:11,055,211...11,151,755
Ensembl chr18:11,055,213...11,151,404
JBrowse link
vitamin D receptor signaling pathway term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PIM1 Pim-1 proto-oncogene, serine/threonine kinase involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:32,788,246...32,793,882
Ensembl chr 7:32,788,291...32,793,878
JBrowse link
G VDR vitamin D receptor involved_in ISS
IEA
UniProt
Ensembl
UniProt
Ensembl
GO_REF:0000024 GO_REF:0000107 NCBI chr 5:78,205,807...78,266,505
Ensembl chr 5:78,205,810...78,266,475
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 17427
    response to stimulus 9703
      response to chemical 5659
        response to nutrient 311
          response to vitamin 186
            cellular response to vitamin 53
              cellular response to L-ascorbic acid 2
              cellular response to biotin 0
              cellular response to cobalamin 0
              cellular response to folic acid 3
              cellular response to vitamin A 1
              cellular response to vitamin B1 1
              cellular response to vitamin B2 0
              cellular response to vitamin B3 1
              cellular response to vitamin B6 0
              cellular response to vitamin D + 35
              cellular response to vitamin E 4
              cellular response to vitamin K + 5
Path 2
Term Annotations click to browse term
  biological_process 17427
    response to stimulus 9703
      response to external stimulus 3052
        cellular response to external stimulus 448
          cellular response to extracellular stimulus 331
            cellular response to nutrient levels 295
              cellular response to nutrient 69
                cellular response to vitamin 53
                  cellular response to L-ascorbic acid 2
                  cellular response to biotin 0
                  cellular response to cobalamin 0
                  cellular response to folic acid 3
                  cellular response to vitamin A 1
                  cellular response to vitamin B1 1
                  cellular response to vitamin B2 0
                  cellular response to vitamin B3 1
                  cellular response to vitamin B6 0
                  cellular response to vitamin D + 35
                  cellular response to vitamin E 4
                  cellular response to vitamin K + 5
paths to the root