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ONTOLOGY REPORT - ANNOTATIONS


Term:cellular response to vitamin
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Accession:GO:0071295 term browser browse the term
Definition:Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a vitamin stimulus.



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cellular response to vitamin term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Brip1 BRCA1 interacting protein C-terminal helicase 1 ISO RGD PMID:16771696 RGD:2326085 NCBI chr11:85,948,957...86,092,041
Ensembl chr11:85,948,964...86,092,019
JBrowse link
cellular response to folic acid term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Folr1 folate receptor 1 (adult) involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 7:101,507,538...101,519,995
Ensembl chr 7:101,507,538...101,519,995
JBrowse link
G Folr2 folate receptor 2 (fetal) acts_upstream_of_or_within TAS (MGI:1928152|PMID:11111049) GOC PMID:11111049 MGI:1928152 NCBI chr 7:101,489,195...101,506,397
Ensembl chr 7:101,489,195...101,506,401
JBrowse link
cellular response to L-ascorbic acid term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Eln elastin ISO RGD PMID:2859894 RGD:9585689 NCBI chr 5:134,731,449...134,776,300
Ensembl chr 5:134,731,447...134,776,177
JBrowse link
G Lep leptin ISO RGD PMID:20400526 RGD:5128594 NCBI chr 6:29,060,220...29,073,875
Ensembl chr 6:29,060,219...29,073,876
JBrowse link
cellular response to menadione term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dcps decapping enzyme, scavenger involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 9:35,035,710...35,087,283
Ensembl chr 9:35,035,704...35,087,357
JBrowse link
G Ndor1 NADPH dependent diflavin oxidoreductase 1 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 2:25,134,825...25,145,458
Ensembl chr 2:25,134,833...25,146,034
Ensembl chr 2:25,134,833...25,146,034
Ensembl chr 2:25,134,833...25,146,034
JBrowse link
cellular response to vitamin A term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ltc4s leukotriene C4 synthase ISO RGD PMID:12767051 RGD:724432 NCBI chr11:50,127,288...50,129,378
Ensembl chr11:50,127,288...50,129,443
JBrowse link
cellular response to vitamin B1 term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mdm2 transformed mouse 3T3 cell double minute 2 ISO RGD PMID:15656374 RGD:2317394 NCBI chr10:117,524,780...117,546,663
Ensembl chr10:117,524,780...117,546,663
JBrowse link
cellular response to vitamin B3 term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sirt1 sirtuin 1 ISO RGD PMID:23555824 RGD:10047117 NCBI chr10:63,154,784...63,174,814
Ensembl chr10:63,154,784...63,217,483
JBrowse link
cellular response to vitamin D term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adamts1 a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 1 ISO RGD PMID:11108265 RGD:9681746 NCBI chr16:85,590,715...85,600,001
Ensembl chr16:85,590,715...85,600,001
JBrowse link
G Atp2b1 ATPase, Ca++ transporting, plasma membrane 1 ISO RGD PMID:11277270 RGD:2317730 NCBI chr10:98,750,243...98,862,005
Ensembl chr10:98,750,268...98,862,005
JBrowse link
G Bglap bone gamma carboxyglutamate protein ISO RGD PMID:3257212 PMID:6607920 RGD:2316174 RGD:6483560 NCBI chr 3:88,290,802...88,291,773
Ensembl chr 3:88,290,808...88,291,771
JBrowse link
G Casr calcium-sensing receptor ISO 1,25-dihydroxycholecalciferol (calcitriol) RGD PMID:21940515 RGD:7205697 NCBI chr16:36,310,947...36,382,605
Ensembl chr16:36,314,058...36,382,503
JBrowse link
G Cyp24a1 cytochrome P450, family 24, subfamily a, polypeptide 1 ISO RGD PMID:28104492 RGD:151665513 NCBI chr 2:170,324,877...170,339,065
Ensembl chr 2:170,324,628...170,339,065
JBrowse link
G Fes feline sarcoma oncogene involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 7:80,027,506...80,037,702
Ensembl chr 7:80,027,504...80,037,694
JBrowse link
G Fgf23 fibroblast growth factor 23 ISO RGD PMID:23263654 RGD:10044209 NCBI chr 6:127,049,865...127,059,259
Ensembl chr 6:127,049,865...127,058,371
JBrowse link
G Fzd1 frizzled class receptor 1 ISO RGD PMID:1334084 RGD:61590 NCBI chr 5:4,803,839...4,808,216
Ensembl chr 5:4,803,839...4,808,035
JBrowse link
G Fzd2 frizzled class receptor 2 ISO RGD PMID:1334084 RGD:61590 NCBI chr11:102,495,257...102,498,884
Ensembl chr11:102,495,222...102,498,884
JBrowse link
G Gdap1 ganglioside-induced differentiation-associated-protein 1 ISO RGD PMID:25449168 RGD:12738378 NCBI chr 1:17,202,028...17,234,495
Ensembl chr 1:17,215,586...17,234,495
JBrowse link
G Il15 interleukin 15 ISO RGD PMID:15637289 RGD:2311387 NCBI chr 8:83,058,253...83,129,883
Ensembl chr 8:83,058,261...83,129,851
JBrowse link
G Itgb1 integrin beta 1 (fibronectin receptor beta) ISO calcitriol RGD PMID:20304064 RGD:2325261 NCBI chr 8:129,412,135...129,460,060
Ensembl chr 8:129,412,135...129,459,681
JBrowse link
G Kdm6a lysine (K)-specific demethylase 6A involved_in ISO RGD
MGI
PMID:31907922 GO_REF:0000096 MGI:4417868 RGD:151665135 NCBI chr  X:18,027,101...18,146,175
Ensembl chr  X:18,028,814...18,146,175
JBrowse link
G Ltbp1 latent transforming growth factor beta binding protein 1 ISO RGD PMID:10025676 RGD:10412059 NCBI chr17:75,312,475...75,699,507
Ensembl chr17:75,312,563...75,699,507
JBrowse link
G Mir125b-1 microRNA 125b-1 involved_in ISO (PMID:28389358) ARUK-UCL PMID:28389358 NCBI chr 9:41,493,222...41,493,298
Ensembl chr 9:41,493,222...41,493,298
JBrowse link
G Mir125b-2 microRNA 125b-2 involved_in ISO (PMID:28389358) ARUK-UCL PMID:28389358 NCBI chr16:77,443,161...77,443,231
Ensembl chr16:77,443,161...77,443,231
JBrowse link
G Mmp1b matrix metallopeptidase 1b (interstitial collagenase) ISO RGD PMID:22064970 RGD:7207281 NCBI chr 9:7,367,670...7,388,026
Ensembl chr 9:7,368,239...7,388,047
JBrowse link
G Nos2 nitric oxide synthase 2, inducible ISO RGD PMID:18534083 RGD:4891908 NCBI chr11:78,811,613...78,851,052
Ensembl chr11:78,811,613...78,851,080
JBrowse link
G Pdia3 protein disulfide isomerase associated 3 involved_in ISO RGD
MGI
PMID:15862831 GO_REF:0000096 MGI:4417868 RGD:9999173 NCBI chr 2:121,244,383...121,269,168
Ensembl chr 2:121,244,256...121,269,168
JBrowse link
G Penk preproenkephalin ISO RGD PMID:8584038 RGD:10003035 NCBI chr 4:4,133,536...4,138,815
Ensembl chr 4:4,133,531...4,138,819
JBrowse link
G Phex phosphate regulating endopeptidase homolog, X-linked ISO RGD PMID:15337762 RGD:11556251 NCBI chr  X:155,945,071...156,198,282
Ensembl chr  X:155,945,071...156,198,308
JBrowse link
G Ptn pleiotrophin ISO RGD PMID:21153232 RGD:9831436 NCBI chr 6:36,691,859...36,787,114
Ensembl chr 6:36,691,864...36,787,155
JBrowse link
G Sfrp1 secreted frizzled-related protein 1 involved_in ISO (PMID:16149051) UniProt PMID:16149051 NCBI chr 8:23,901,401...23,939,648
Ensembl chr 8:23,901,518...23,939,648
JBrowse link
G Sult2a1 sulfotransferase family 2A, dehydroepiandrosterone (DHEA)-preferring, member 1 ISO RGD PMID:14978251 RGD:2317006 NCBI chr 7:13,530,171...13,571,335
Ensembl chr 7:13,530,171...13,571,334
JBrowse link
G Tnc tenascin C ISO RGD PMID:10502285 RGD:4889620 NCBI chr 4:63,878,022...63,965,554
Ensembl chr 4:63,878,022...63,965,252
JBrowse link
G Trem1 triggering receptor expressed on myeloid cells 1 ISO RGD PMID:29331667 RGD:127284861 NCBI chr17:48,539,763...48,553,955
Ensembl chr17:48,539,796...48,553,952
JBrowse link
G Vdr vitamin D (1,25-dihydroxyvitamin D3) receptor ISO RGD PMID:9753201 RGD:8158092 NCBI chr15:97,752,308...97,806,177
Ensembl chr15:97,752,306...97,808,511
JBrowse link
cellular response to vitamin E term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Col1a1 collagen, type I, alpha 1 ISO RGD PMID:23722449 RGD:8552711 NCBI chr11:94,827,050...94,843,868
Ensembl chr11:94,827,050...94,843,868
JBrowse link
G Col2a1 collagen, type II, alpha 1 ISO RGD PMID:23722449 RGD:8552711 NCBI chr15:97,873,483...97,902,722
Ensembl chr15:97,873,483...97,902,576
JBrowse link
G Pawr PRKC, apoptosis, WT1, regulator ISO RGD PMID:10428045 RGD:9835341 NCBI chr10:108,168,050...108,250,708
Ensembl chr10:108,167,982...108,250,101
JBrowse link
G Pparg peroxisome proliferator activated receptor gamma ISO RGD PMID:11752099 RGD:8553036 NCBI chr 6:115,337,840...115,467,365
Ensembl chr 6:115,337,912...115,467,360
JBrowse link
cellular response to vitamin K term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ccl5 chemokine (C-C motif) ligand 5 ISO menadione (K3) RGD PMID:19291322 RGD:4889997 NCBI chr11:83,416,604...83,421,344
Ensembl chr11:83,416,604...83,421,344
JBrowse link
G Gas6 growth arrest specific 6 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 8:13,515,374...13,544,535
Ensembl chr 8:13,515,374...13,544,490
JBrowse link
G Postn periostin, osteoblast specific factor involved_in IDA
ISO
(MGI:3804342|PMID:18450759) UniProt
MGI
PMID:18450759 GO_REF:0000096 MGI:3804342 MGI:4834177 NCBI chr 3:54,266,688...54,298,462
Ensembl chr 3:54,268,530...54,298,458
JBrowse link
negative regulation of vitamin D receptor signaling pathway term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Kank2 KN motif and ankyrin repeat domains 2 involved_in IBA
ISO
(MGI:6201960|PMID:21873635) GO_Central
MGI
PMID:21873635 GO_REF:0000096 MGI:4834177 MGI:6201960 NCBI chr 9:21,678,069...21,709,842
Ensembl chr 9:21,678,080...21,710,040
JBrowse link
G Snai2 snail family zinc finger 2 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr16:14,523,716...14,527,259
Ensembl chr16:14,523,716...14,527,249
JBrowse link
positive regulation of vitamin D receptor signaling pathway term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cyp27b1 cytochrome P450, family 27, subfamily b, polypeptide 1 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr10:126,884,115...126,891,897
Ensembl chr10:126,884,119...126,888,875
JBrowse link
G Mn1 meningioma 1 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 5:111,565,166...111,604,896
Ensembl chr 5:111,565,228...111,604,899
JBrowse link
G Rxra retinoid X receptor alpha involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 2:27,566,457...27,653,331
Ensembl chr 2:27,566,452...27,652,969
JBrowse link
G Snw1 SNW domain containing 1 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr12:87,496,680...87,519,069
Ensembl chr12:87,495,845...87,519,044
JBrowse link
G Vdr vitamin D (1,25-dihydroxyvitamin D3) receptor involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr15:97,752,308...97,806,177
Ensembl chr15:97,752,306...97,808,511
JBrowse link
regulation of vitamin D receptor signaling pathway term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Med1 mediator complex subunit 1 acts_upstream_of_or_within IMP (MGI:3655015|PMID:16324150) MGI PMID:16324150 MGI:3655015 NCBI chr11:98,042,980...98,084,121
Ensembl chr11:98,042,980...98,084,119
JBrowse link
G Snw1 SNW domain containing 1 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr12:87,496,680...87,519,069
Ensembl chr12:87,495,845...87,519,044
JBrowse link
G Trim24 tripartite motif-containing 24 acts_upstream_of_or_within IMP (MGI:3776949|PMID:18287084) MGI PMID:18287084 MGI:3776949 NCBI chr 6:37,846,816...37,945,380
Ensembl chr 6:37,847,746...37,943,231
JBrowse link
vitamin D receptor signaling pathway term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pim1 proviral integration site 1 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr17:29,709,759...29,715,085
Ensembl chr17:29,709,727...29,715,086
JBrowse link
G Vdr vitamin D (1,25-dihydroxyvitamin D3) receptor involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr15:97,752,308...97,806,177
Ensembl chr15:97,752,306...97,808,511
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 28745
    response to stimulus 10811
      response to chemical 5246
        response to nutrient 321
          response to vitamin 190
            cellular response to vitamin 53
              cellular response to L-ascorbic acid 2
              cellular response to biotin 0
              cellular response to cobalamin 0
              cellular response to folic acid 2
              cellular response to vitamin A 1
              cellular response to vitamin B1 1
              cellular response to vitamin B2 0
              cellular response to vitamin B3 1
              cellular response to vitamin B6 0
              cellular response to vitamin D + 36
              cellular response to vitamin E 4
              cellular response to vitamin K + 5
Path 2
Term Annotations click to browse term
  biological_process 28745
    response to stimulus 10811
      response to external stimulus 3598
        cellular response to external stimulus 493
          cellular response to extracellular stimulus 355
            cellular response to nutrient levels 314
              cellular response to nutrient 71
                cellular response to vitamin 53
                  cellular response to L-ascorbic acid 2
                  cellular response to biotin 0
                  cellular response to cobalamin 0
                  cellular response to folic acid 2
                  cellular response to vitamin A 1
                  cellular response to vitamin B1 1
                  cellular response to vitamin B2 0
                  cellular response to vitamin B3 1
                  cellular response to vitamin B6 0
                  cellular response to vitamin D + 36
                  cellular response to vitamin E 4
                  cellular response to vitamin K + 5
paths to the root