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ONTOLOGY REPORT - ANNOTATIONS


Term:cellular response to vitamin
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Accession:GO:0071295 term browser browse the term
Definition:Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a vitamin stimulus.



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cellular response to vitamin term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BRIP1 BRCA1 interacting helicase 1 ISO RGD PMID:16771696 RGD:2326085 NCBI chr 9:34,804,285...34,984,640
Ensembl chr 9:34,806,535...34,983,788
JBrowse link
cellular response to folic acid term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LOC476816 folate receptor beta involved_in IEA GOC
GOC
GO_REF:0000108 NCBI chr21:25,917,476...25,923,267 JBrowse link
G LOC609612 folate receptor alpha involved_in IEA GOC
Ensembl
GOC
GO_REF:0000107 GO_REF:0000108 NCBI chr21:25,944,350...25,951,010 JBrowse link
cellular response to L-ascorbic acid term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ELN elastin ISO RGD PMID:2859894 RGD:9585689 NCBI chr 6:6,299,524...6,331,425
Ensembl chr 6:6,300,727...6,331,325
JBrowse link
G LEP leptin ISO RGD PMID:20400526 RGD:5128594 NCBI chr14:8,115,396...8,130,946
Ensembl chr14:8,116,122...8,131,395
JBrowse link
cellular response to menadione term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DCPS decapping enzyme, scavenger involved_in ISO (PMID:16140270) UniProt PMID:16140270 NCBI chr 5:8,168,887...8,212,582
Ensembl chr 5:8,172,313...8,212,832
JBrowse link
G NDOR1 NADPH dependent diflavin oxidoreductase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:48,456,256...48,464,930
Ensembl chr 9:48,455,260...48,464,970
JBrowse link
cellular response to vitamin A term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LTC4S leukotriene C4 synthase ISO RGD PMID:12767051 RGD:724432 NCBI chr11:1,893,927...1,897,028
Ensembl chr11:1,894,380...1,897,752
JBrowse link
cellular response to vitamin B1 term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G MDM2 MDM2 proto-oncogene ISO RGD PMID:15656374 RGD:2317394 NCBI chr10:10,936,288...10,963,118
Ensembl chr10:10,893,719...10,962,596
JBrowse link
cellular response to vitamin B3 term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SIRT1 sirtuin 1 ISO RGD PMID:23555824 RGD:10047117 NCBI chr 4:19,188,616...19,220,031
Ensembl chr 4:19,188,675...19,218,279
JBrowse link
cellular response to vitamin D term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ADAMTS1 ADAM metallopeptidase with thrombospondin type 1 motif 1 ISO RGD PMID:11108265 RGD:9681746 NCBI chr31:22,169,821...22,178,879
Ensembl chr31:22,170,381...22,178,945
JBrowse link
G ATP2B1 ATPase plasma membrane Ca2+ transporting 1 ISO RGD PMID:11277270 RGD:2317730 NCBI chr15:30,547,009...30,674,094
Ensembl chr15:30,547,015...30,616,429
JBrowse link
G BGLAP bone gamma-carboxyglutamate protein ISO RGD PMID:3257212 PMID:6607920 RGD:2316174 RGD:6483560 NCBI chr 7:41,630,092...41,630,976
Ensembl chr 7:41,630,098...41,665,791
JBrowse link
G CASR calcium sensing receptor ISO 1,25-dihydroxycholecalciferol (calcitriol) RGD PMID:21940515 RGD:7205697 NCBI chr33:25,340,822...25,432,814
Ensembl chr33:25,405,846...25,432,559
JBrowse link
G CYP24A1 cytochrome P450 family 24 subfamily A member 1 ISO RGD PMID:28104492 RGD:151665513 NCBI chr24:39,861,018...39,878,161
Ensembl chr24:39,862,355...39,878,216
JBrowse link
G FES FES proto-oncogene, tyrosine kinase involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 3:53,346,975...53,356,547
Ensembl chr 3:53,347,012...53,356,516
JBrowse link
G FGF23 fibroblast growth factor 23 ISO RGD PMID:23263654 RGD:10044209 NCBI chr27:40,501,655...40,511,785
Ensembl chr27:40,501,731...40,509,766
JBrowse link
G FZD1 frizzled class receptor 1 ISO RGD PMID:1334084 RGD:61590 NCBI chr14:17,046,911...17,050,515
Ensembl chr14:17,047,382...17,049,337
JBrowse link
G FZD2 frizzled class receptor 2 ISO RGD PMID:1334084 RGD:61590 NCBI chr 9:18,888,711...18,890,549
Ensembl chr 9:18,888,696...18,890,525
JBrowse link
G GDAP1 ganglioside induced differentiation associated protein 1 ISO RGD PMID:25449168 RGD:12738378 NCBI chr29:22,805,468...22,835,909
Ensembl chr29:22,804,965...22,833,069
JBrowse link
G IL15 interleukin 15 ISO RGD PMID:15637289 RGD:2311387 NCBI chr19:1,339,607...1,364,762
Ensembl chr19:1,339,967...1,364,762
JBrowse link
G ITGB1 integrin subunit beta 1 ISO calcitriol RGD PMID:20304064 RGD:2325261 NCBI chr 2:3,728,472...3,757,696
Ensembl chr 2:3,670,596...3,756,961
JBrowse link
G KDM6A lysine demethylase 6A ISO RGD PMID:31907922 RGD:151665135 NCBI chr  X:38,745,854...38,964,029
Ensembl chr  X:38,745,854...38,959,842
JBrowse link
G LTBP1 latent transforming growth factor beta binding protein 1 ISO RGD PMID:10025676 RGD:10412059 NCBI chr17:26,129,528...26,521,782
Ensembl chr17:26,130,781...26,521,779
JBrowse link
G MIR125B-1 microRNA mir-125b-1 involved_in ISO (PMID:28389358) ARUK-UCL PMID:28389358 NCBI chr 5:12,097,672...12,097,732
Ensembl chr 5:12,097,658...12,097,745
JBrowse link
G MIR125B-2 microRNA mir-125b-2 involved_in ISO (PMID:28389358) ARUK-UCL PMID:28389358 NCBI chr31:13,304,980...13,305,040
Ensembl chr31:13,304,964...13,305,052
JBrowse link
G MMP1 matrix metallopeptidase 1 ISO RGD PMID:22064970 RGD:7207281 NCBI chr 5:28,978,385...28,986,644
Ensembl chr 5:28,978,473...28,986,648
JBrowse link
G NOS2 nitric oxide synthase 2 ISO RGD PMID:18534083 RGD:4891908 NCBI chr 9:42,171,821...42,210,217
Ensembl chr 9:42,171,821...42,208,588
JBrowse link
G PDIA3 protein disulfide isomerase family A member 3 ISO RGD PMID:15862831 RGD:9999173 NCBI chr30:10,487,926...10,513,437
Ensembl chr30:10,487,921...10,513,397
JBrowse link
G PENK proenkephalin ISO RGD PMID:8584038 RGD:10003035 NCBI chr29:7,757,543...7,763,137
Ensembl chr29:7,757,857...7,762,398
JBrowse link
G PHEX phosphate regulating endopeptidase X-linked ISO RGD PMID:15337762 RGD:11556251 NCBI chr  X:17,830,714...18,038,755
Ensembl chr  X:17,829,158...18,035,775
JBrowse link
G PTN pleiotrophin ISO RGD PMID:21153232 RGD:9831436 NCBI chr16:11,283,078...11,382,820
Ensembl chr16:11,283,077...11,382,814
JBrowse link
G SFRP1 secreted frizzled related protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:24,262,451...24,306,162
Ensembl chr16:24,261,946...24,302,964
JBrowse link
G TNC tenascin C ISO RGD PMID:10502285 RGD:4889620 NCBI chr11:69,077,532...69,169,673
Ensembl chr11:69,077,535...69,170,281
JBrowse link
G TREM1 triggering receptor expressed on myeloid cells 1 ISO RGD PMID:29331667 RGD:127284861 NCBI chr12:9,990,678...10,000,195
Ensembl chr12:9,990,679...10,000,236
JBrowse link
G VDR vitamin D receptor ISO RGD PMID:9753201 RGD:8158092 NCBI chr27:6,852,915...6,909,466
Ensembl chr27:6,852,723...6,909,470
JBrowse link
cellular response to vitamin E term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G COL1A1 collagen type I alpha 1 chain ISO RGD PMID:23722449 RGD:8552711 NCBI chr 9:26,183,852...26,199,927
Ensembl chr 9:26,183,852...26,199,927
JBrowse link
G COL2A1 collagen type II alpha 1 chain ISO RGD PMID:23722449 RGD:8552711 NCBI chr27:6,756,994...6,787,733
Ensembl chr27:6,756,994...6,787,733
JBrowse link
G PAWR pro-apoptotic WT1 regulator ISO RGD PMID:10428045 RGD:9835341 NCBI chr15:22,114,014...22,159,287 JBrowse link
G PPARG peroxisome proliferator activated receptor gamma ISO RGD PMID:11752099 RGD:8553036 NCBI chr20:6,134,618...6,265,481
Ensembl chr20:6,050,357...6,207,981
JBrowse link
cellular response to vitamin K term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CCL5 C-C motif chemokine ligand 5 ISO menadione (K3) RGD PMID:19291322 RGD:4889997 NCBI chr 9:37,817,409...37,823,852
Ensembl chr 9:37,817,305...37,823,852
JBrowse link
G GAS6 growth arrest specific 6 involved_in ISO (PMID:16359517) UniProt PMID:16359517 NCBI chr22:60,975,196...61,005,869
Ensembl chr22:60,974,849...61,005,875
JBrowse link
G POSTN periostin involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr25:3,167,319...3,208,970
Ensembl chr25:3,167,359...3,208,411
JBrowse link
negative regulation of vitamin D receptor signaling pathway term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G KANK2 KN motif and ankyrin repeat domains 2 involved_in IBA
IEA
(PMID:21873635) GO_Central
Ensembl
PMID:21873635 GO_REF:0000107 NCBI chr20:50,067,749...50,093,377
Ensembl chr20:50,067,760...50,091,320
JBrowse link
G SNAI2 snail family transcriptional repressor 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr29:1,154,132...1,156,653
Ensembl chr29:1,154,036...1,156,653
JBrowse link
positive regulation of vitamin D receptor signaling pathway term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CYP27B1 cytochrome P450 family 27 subfamily B member 1 involved_in ISO (PMID:16549446) BHF-UCL PMID:16549446 NCBI chr10:1,825,224...1,830,845
Ensembl chr10:1,826,046...1,829,911
JBrowse link
G MN1 MN1 proto-oncogene, transcriptional regulator involved_in ISO (PMID:15890672) UniProt PMID:15890672 NCBI chr26:21,216,912...21,261,518
Ensembl chr26:21,216,837...21,261,031
JBrowse link
G RXRA retinoid X receptor alpha involved_in ISO (PMID:20171278) ComplexPortal PMID:20171278 NCBI chr 9:50,525,195...50,575,720
Ensembl chr 9:50,484,567...50,573,119
JBrowse link
G SNW1 SNW domain containing 1 involved_in ISO (PMID:11514567), (PMID:9632709) UniProt PMID:9632709 PMID:11514567 NCBI chr 8:50,478,924...50,512,360
Ensembl chr 8:50,479,338...50,512,243
JBrowse link
G VDR vitamin D receptor involved_in IEA Ensembl GO_REF:0000107 NCBI chr27:6,852,915...6,909,466
Ensembl chr27:6,852,723...6,909,470
JBrowse link
regulation of vitamin D receptor signaling pathway term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G MED1 mediator complex subunit 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3655015|PMID:16324150) Ensembl
MGI
PMID:16324150 GO_REF:0000107 MGI:3655015 NCBI chr 9:22,989,257...23,019,350
Ensembl chr 9:22,989,301...23,019,349
JBrowse link
G SNW1 SNW domain containing 1 involved_in ISO (PMID:14985122) UniProt PMID:14985122 NCBI chr 8:50,478,924...50,512,360
Ensembl chr 8:50,479,338...50,512,243
JBrowse link
G TRIM24 tripartite motif containing 24 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3776949|PMID:18287084) MGI
Ensembl
PMID:18287084 GO_REF:0000107 MGI:3776949 NCBI chr16:10,033,993...10,133,450
Ensembl chr16:10,034,390...10,133,435
JBrowse link
vitamin D receptor signaling pathway term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PIM1 Pim-1 proto-oncogene, serine/threonine kinase involved_in ISO (PMID:22720752) CACAO PMID:22720752 NCBI chr12:6,213,504...6,217,933
Ensembl chr12:6,211,867...6,217,933
JBrowse link
G VDR vitamin D receptor involved_in IEA Ensembl GO_REF:0000107 NCBI chr27:6,852,915...6,909,466
Ensembl chr27:6,852,723...6,909,470
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 17341
    response to stimulus 9193
      response to chemical 5193
        response to nutrient 307
          response to vitamin 181
            cellular response to vitamin 52
              cellular response to L-ascorbic acid 2
              cellular response to biotin 0
              cellular response to cobalamin 0
              cellular response to folic acid 2
              cellular response to vitamin A 1
              cellular response to vitamin B1 1
              cellular response to vitamin B2 0
              cellular response to vitamin B3 1
              cellular response to vitamin B6 0
              cellular response to vitamin D + 35
              cellular response to vitamin E 4
              cellular response to vitamin K + 5
Path 2
Term Annotations click to browse term
  biological_process 17341
    response to stimulus 9193
      response to external stimulus 3031
        cellular response to external stimulus 447
          cellular response to extracellular stimulus 328
            cellular response to nutrient levels 291
              cellular response to nutrient 68
                cellular response to vitamin 52
                  cellular response to L-ascorbic acid 2
                  cellular response to biotin 0
                  cellular response to cobalamin 0
                  cellular response to folic acid 2
                  cellular response to vitamin A 1
                  cellular response to vitamin B1 1
                  cellular response to vitamin B2 0
                  cellular response to vitamin B3 1
                  cellular response to vitamin B6 0
                  cellular response to vitamin D + 35
                  cellular response to vitamin E 4
                  cellular response to vitamin K + 5
paths to the root