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ONTOLOGY REPORT - ANNOTATIONS

Term:protein localization to chromatin
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Accession:GO:0071168 term browser browse the term
Definition:Any process in which a protein is transported to, or maintained at, a part of a chromosome that is organized into chromatin.
Synonyms:exact_synonym: protein localisation to chromatin

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protein localization to chromatin term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Carm1 coactivator-associated arginine methyltransferase 1 acts_upstream_of_or_within ISO (MGI:3613433|PMID:15616592) RGD PMID:15616592 MGI:3613433 NCBI chr 8:22,577,723...22,622,555
Ensembl chr 8:22,577,715...22,622,560 		JBrowse link
G Chmp7 charged multivesicular body protein 7 involved_in ISO (PMID:28242692) RGD PMID:28242692 NCBI chr15:51,385,373...51,400,606
Ensembl chr15:51,385,386...51,400,606 		JBrowse link
G Daxx death-domain associated protein involved_in ISO UniProtKB:Q60953 (MGI:5882889|PMID:17081986) RGD PMID:17081986 MGI:5882889 NCBI chr20:5,480,103...5,485,962
Ensembl chr20:5,480,103...5,485,926 		JBrowse link
G Esco2 establishment of sister chromatid cohesion N-acetyltransferase 2 acts_upstream_of_or_within ISO MGI:5308063 (MGI:5306174|PMID:22101327) RGD PMID:22101327 MGI:5306174 NCBI chr15:42,500,929...42,519,019
Ensembl chr15:42,500,929...42,518,855 		JBrowse link
G Esr1 estrogen receptor 1 involved_in ISO
IEA		 (PMID:20388878)
GO_REF:0000107		 RGD
Ensembl		 PMID:20388878 GO_REF:0000107 NCBI chr 1:41,192,029...41,594,799
Ensembl chr 1:41,192,824...41,594,796 		JBrowse link
G Ezh2 enhancer of zeste 2 polycomb repressive complex 2 subunit acts_upstream_of_or_within ISO MGI:3805309 (MGI:3788959|PMID:18311137) RGD PMID:18311137 MGI:3788959 NCBI chr 4:77,284,404...77,347,011
Ensembl chr 4:77,284,404...77,347,011 		JBrowse link
G Fam47e family with sequence similarity 47, member E involved_in ISO (PMID:33376131) RGD PMID:33376131 NCBI chr14:16,991,496...17,027,563 JBrowse link
G Lemd2 LEM domain nuclear envelope protein 2 involved_in ISO (PMID:28242692) RGD PMID:28242692 NCBI chr20:5,779,742...5,786,213
Ensembl chr20:6,545,083...6,556,350 		JBrowse link
G Mcm8 minichromosome maintenance 8 homologous recombination repair factor involved_in ISO (PMID:23401855) RGD PMID:23401855 NCBI chr 3:125,470,499...125,500,795
Ensembl chr 3:125,470,551...125,500,795 		JBrowse link
G Mcm9 minichromosome maintenance 9 homologous recombination repair factor involved_in ISO (PMID:23401855), (PMID:26300262) RGD PMID:23401855 PMID:26300262 NCBI chr20:34,818,093...34,930,157
Ensembl chr20:34,846,804...34,929,965 		JBrowse link
G Mrnip MRN complex interacting protein involved_in ISO (PMID:27568553) RGD PMID:27568553 NCBI chr10:35,680,687...35,704,685
Ensembl chr10:35,680,658...35,704,776 		JBrowse link
G Msh2 mutS homolog 2 involved_in ISO
IEA		 (PMID:26300262)
GO_REF:0000107		 RGD
Ensembl		 PMID:26300262 GO_REF:0000107 NCBI chr 6:11,215,951...11,274,916
Ensembl chr 6:11,215,963...11,274,932 		JBrowse link
G Plk1 polo-like kinase 1 involved_in IEA
ISS
ISO		 GO_REF:0000107
GO_REF:0000024
(PMID:21111234)		 Ensembl
UniProt
RGD		 PMID:21111234 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:192,115,990...192,125,969
Ensembl chr 1:192,115,966...192,125,989 		JBrowse link
G Rad21 RAD21 cohesin complex component involved_in ISO (PMID:21111234) RGD PMID:21111234 NCBI chr 7:91,511,755...91,538,673
Ensembl chr 7:91,511,756...91,538,673 		JBrowse link
G Wapl WAPL cohesin release factor involved_in ISO (PMID:21111234) RGD PMID:21111234 NCBI chr16:11,029,325...11,108,867
Ensembl chr16:11,032,531...11,106,589 		JBrowse link
cohesin loading term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mau2 MAU2 sister chromatid cohesion factor involved_in ISO (PMID:22628566) RGD PMID:22628566 NCBI chr16:21,132,115...21,163,257
Ensembl chr16:21,132,147...21,163,257 		JBrowse link
G Nipbl NIPBL, cohesin loading factor involved_in ISO (PMID:22628566)
(MGI:6102971|PMID:29094699)		 RGD PMID:22628566 PMID:29094699 MGI:6102971 NCBI chr 2:57,508,830...57,676,197
Ensembl chr 2:57,509,428...57,600,820 		JBrowse link
establishment of protein localization to chromatin term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G H1f5 H1.5 linker histone, cluster member involved_in ISO (PMID:22956909) RGD PMID:22956909 NCBI chr17:44,766,313...44,766,981
Ensembl chr17:44,766,313...44,766,981 		JBrowse link
G Lrwd1 leucine-rich repeats and WD repeat domain containing 1 involved_in ISO
IBA		 (PMID:20932478)
PMID:21873635		 RGD PMID:20932478, PMID:21873635 RGD:13792537 NCBI chr12:23,574,234...23,587,262
Ensembl chr12:23,574,187...23,587,276 		JBrowse link
G Macroh2a1 macroH2A.1 histone involved_in ISO (PMID:19734898) RGD PMID:19734898 NCBI chr17:9,282,109...9,344,698
Ensembl chr17:9,282,675...9,344,678 		JBrowse link
G Macroh2a2 macroH2A.2 histone involved_in ISO (PMID:19734898) RGD PMID:19734898 NCBI chr20:31,352,924...31,402,483
Ensembl chr20:31,352,960...31,402,483 		JBrowse link
G Mir208b microRNA 208b acts_upstream_of_or_within ISO (MGI:5576864|PMID:24137001) RGD PMID:24137001 MGI:5576864 NCBI chr15:33,639,510...33,639,621
Ensembl chr15:33,639,510...33,639,621 		JBrowse link
G Nipbl NIPBL, cohesin loading factor involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:57,508,830...57,676,197
Ensembl chr 2:57,509,428...57,600,820 		JBrowse link
G Pih1d1 PIH1 domain containing 1 involved_in ISO (PMID:22368283) RGD PMID:22368283 NCBI chr 1:101,151,240...101,156,806
Ensembl chr 1:101,152,734...101,156,805 		JBrowse link
G Ruvbl2 RuvB-like AAA ATPase 2 involved_in ISO (PMID:23637611) RGD PMID:23637611 NCBI chr 1:101,413,766...101,426,970
Ensembl chr 1:101,413,766...101,426,852 		JBrowse link
negative regulation of protein localization to chromatin term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Spi1 Spi-1 proto-oncogene involved_in IEA
ISO		 GO_REF:0000107
(MGI:6381024|PMID:30911105)		 Ensembl
RGD		 PMID:30911105 GO_REF:0000107 MGI:6381024 NCBI chr 3:79,918,127...79,937,708
Ensembl chr 3:79,918,969...79,938,301 		JBrowse link
positive regulation of mitotic cohesin loading term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nipbl NIPBL, cohesin loading factor involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:57,508,830...57,676,197
Ensembl chr 2:57,509,428...57,600,820 		JBrowse link
protein localization to heterochromatin term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pphln1 periphilin 1 involved_in IBA
ISO		 PMID:21873635
(PMID:28581500)		 RGD PMID:28581500, PMID:21873635 RGD:13792537 NCBI chr 7:134,602,109...134,693,807
Ensembl chr 7:134,603,121...134,695,864 		JBrowse link
G Tasor transcription activation suppressor involved_in ISO (PMID:28581500) RGD PMID:28581500 NCBI chr16:3,050,506...3,108,168
Ensembl chr16:3,051,449...3,105,531 		JBrowse link
regulation of cohesin loading term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdca5 cell division cycle associated 5 involved_in IBA
ISO		 PMID:21873635
(PMID:17349791)		 RGD PMID:17349791, PMID:21873635 RGD:13792537 NCBI chr 1:221,448,661...221,462,235
Ensembl chr 1:221,448,661...221,462,233 		JBrowse link
G Hdac8 histone deacetylase 8 involved_in ISO
ISS		 (PMID:22885700)
GO_REF:0000024		 RGD
UniProt		 PMID:22885700 GO_REF:0000024 NCBI chr  X:72,163,777...72,370,058
Ensembl chr  X:72,163,777...72,370,044 		JBrowse link
G Rb1 RB transcriptional corepressor 1 involved_in ISO
IEA		 (PMID:20551165)
GO_REF:0000107		 RGD
Ensembl		 PMID:20551165 GO_REF:0000107 NCBI chr15:55,081,582...55,209,060
Ensembl chr15:55,083,140...55,209,342 		JBrowse link
G Wapl WAPL cohesin release factor involved_in
acts_upstream_of_or_within		 IBA
ISO		 PMID:21873635
MGI:5551791|MGI:5551807 (MGI:5544860|PMID:23975099)
(PMID:17113138)		 RGD PMID:17113138 PMID:23975099, PMID:21873635 MGI:5544860, RGD:13792537 NCBI chr16:11,029,325...11,108,867
Ensembl chr16:11,032,531...11,106,589 		JBrowse link
regulation of protein localization to chromatin term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Setd2 SET domain containing 2, histone lysine methyltransferase involved_in ISO (PMID:24843002) RGD PMID:24843002 NCBI chr 8:118,802,478...118,888,224
Ensembl chr 8:118,803,075...118,888,224 		JBrowse link
G Vcp valosin-containing protein involved_in ISS
ISO		 GO_REF:0000024
(PMID:32152270)		 UniProt
RGD		 PMID:32152270 GO_REF:0000024 NCBI chr 5:58,426,548...58,445,953
Ensembl chr 5:58,426,549...58,445,953 		JBrowse link
G Vcpip1 valosin containing protein interacting protein 1 involved_in ISO
ISS		 (PMID:32649882)
GO_REF:0000024		 RGD
UniProt		 PMID:32649882 GO_REF:0000024 NCBI chr 5:9,231,180...9,257,821
Ensembl chr 5:9,230,984...9,257,934 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19612
    localization 6449
      macromolecule localization 3004
        protein localization 2564
          cellular protein localization 1837
            protein localization to organelle 935
              protein localization to chromosome 98
                protein localization to chromatin 33
                  cohesin loading + 6
                  establishment of protein localization to chromatin + 8
                  negative regulation of protein localization to chromatin + 1
                  positive regulation of protein localization to chromatin + 1
                  protein localization to CENP-A containing chromatin 0
                  protein localization to euchromatin + 0
                  protein localization to heterochromatin + 2
                  regulation of protein localization to chromatin + 9
paths to the root