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ONTOLOGY REPORT - ANNOTATIONS


Term:DNA conformation change
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Accession:GO:0071103 term browser browse the term
Definition:A cellular process that results in a change in the spatial configuration of a DNA molecule. A conformation change can bend DNA, or alter the, twist, writhe, or linking number of a DNA molecule.
Synonyms:exact_synonym: DNA conformation modification



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DNA conformation change term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ABL1 ABL proto-oncogene 1, non-receptor tyrosine kinase involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:270,761,641...270,906,708
Ensembl chr 1:270,761,668...270,906,711
JBrowse link
G HHEX hematopoietically expressed homeobox involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:104,194,424...104,199,684
Ensembl chr14:104,194,343...104,200,221
JBrowse link
apoptotic chromosome condensation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACIN1 apoptotic chromatin condensation inducer 1 involved_in ISO (PMID:10490026) UniProt PMID:10490026 NCBI chr 7:75,951,203...75,989,234
Ensembl chr 7:75,951,203...75,989,231
JBrowse link
G DFFB DNA fragmentation factor subunit beta involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:65,310,868...65,323,816
Ensembl chr 6:65,310,863...65,323,816
JBrowse link
G ERN2 endoplasmic reticulum to nucleus signaling 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:22,510,067...22,537,872
Ensembl chr 3:22,509,773...22,537,868
JBrowse link
G GPER1 G protein-coupled estrogen receptor 1 involved_in ISO PMID:23907461 UniProt PMID:23907461 RGD:8553942 NCBI chr 3:711,427...715,982
Ensembl chr 3:712,160...715,982
JBrowse link
G TOP2A DNA topoisomerase II alpha involved_in IEA
IBA
(PMID:21873635) Ensembl
GO_Central
PMID:21873635 GO_REF:0000107 NCBI chr12:22,001,300...22,028,452
Ensembl chr12:22,001,336...22,028,454
JBrowse link
CENP-A containing chromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CENPP centromere protein P involved_in IEA InterPro GO_REF:0000002 NCBI chr 3:42,053,074...42,309,745
Ensembl chr 3:42,053,058...42,308,381
JBrowse link
G HJURP Holliday junction recognition protein involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr15:134,106,561...134,123,163
Ensembl chr15:134,106,569...134,123,107
JBrowse link
G MIS18A MIS18 kinetochore protein A acts_upstream_of_or_within
involved_in
ISO
IBA
(MGI:5438906|PMID:22516971)
(PMID:21873635)
MGI
GO_Central
PMID:21873635 PMID:22516971 MGI:5438906 NCBI chr13:195,912,044...195,928,309
Ensembl chr13:195,911,299...195,928,292
JBrowse link
G NASP nuclear autoantigenic sperm protein involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 6:165,773,964...165,804,978
Ensembl chr 6:165,770,055...165,805,369
JBrowse link
G OIP5 Opa interacting protein 5 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 1:130,036,478...130,054,058
Ensembl chr 1:130,036,480...130,047,043
JBrowse link
chromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CDAN1 codanin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:128,641,411...128,655,556
Ensembl chr 1:128,641,430...128,655,554
JBrowse link
G CHAF1A chromatin assembly factor 1 subunit A involved_in ISO (PMID:8858152) UniProt PMID:8858152 NCBI chr 2:74,380,706...74,411,875
Ensembl chr 2:74,380,708...74,411,825
JBrowse link
G CHAF1B chromatin assembly factor 1 subunit B involved_in ISO (PMID:8858152) UniProt PMID:8858152 NCBI chr13:200,048,096...200,074,902
Ensembl chr13:200,048,131...200,072,556
JBrowse link
G HMGB1 high mobility group box 1 involved_in ISO (MGI:3807115|PMID:18650382) UniProt PMID:18650382 MGI:3807115 NCBI chr11:7,195,556...7,321,071 JBrowse link
G NOC2L NOC2 like nucleolar associated transcriptional repressor involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:63,307,703...63,320,799
Ensembl chr 6:63,308,187...63,340,917
JBrowse link
G RBBP4 RB binding protein 4, chromatin remodeling factor involved_in ISO (PMID:8858152) UniProt PMID:8858152 NCBI chr 6:88,987,092...89,006,815 JBrowse link
G TP53 tumor protein p53 involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:52,939,643...52,953,786
Ensembl chr12:52,939,643...52,953,819
JBrowse link
chromosome condensation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BANF1 BAF nuclear assembly factor 1 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 2:6,333,451...6,335,326 JBrowse link
G BANF2 BANF family member 2 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr17:26,138,520...26,175,665
Ensembl chr17:26,131,001...26,175,669
JBrowse link
G CDK1 cyclin dependent kinase 1 ISO RGD PMID:15695611 RGD:2301352 NCBI chr14:64,233,945...64,255,290
Ensembl chr14:64,233,988...64,395,453
JBrowse link
G H1-3 H1.3 linker histone, cluster member involved_in IBA (PMID:21873635) GO_Central PMID:21873635 Ensembl chr 7:20,862,942...20,882,693 JBrowse link
G H1-4 H1.4 linker histone, cluster member involved_in IBA (PMID:21873635) GO_Central PMID:21873635 Ensembl chr 7:20,819,639...20,854,590 JBrowse link
G H1-6 H1.6 linker histone, cluster member involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 7:20,774,135...20,777,244 JBrowse link
G H1FOO oocyte-specific H1 histone involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr13:68,921,491...68,943,061
Ensembl chr13:68,938,024...68,942,744
JBrowse link
G LOC100510904 histone H1.0 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 5:10,038,944...10,041,242
Ensembl chr 5:10,038,951...10,041,080
JBrowse link
G PRM1 protamine 1 involved_in IEA UniProt GO_REF:0000043 NCBI chr 3:31,861,087...31,861,529
Ensembl chr 3:31,861,128...31,861,385
JBrowse link
G PRM2 protamine 2 involved_in IEA UniProt GO_REF:0000043 NCBI chr 3:31,864,350...31,864,959
Ensembl chr 3:31,864,323...31,865,023
JBrowse link
G SMC2 structural maintenance of chromosomes 2 involved_in IEA UniProt GO_REF:0000043 NCBI chr 1:245,409,559...245,459,032
Ensembl chr 1:245,410,146...245,484,780
JBrowse link
G SMC5 structural maintenance of chromosomes 5 acts_upstream_of_or_within ISO (MGI:5882483|PMID:26919979) MGI PMID:26919979 MGI:5882483 NCBI chr 1:223,560,271...223,653,370 JBrowse link
G TOP2A DNA topoisomerase II alpha acts_upstream_of_or_within ISO (MGI:2158879|PMID:11835580) MGI PMID:11835580 MGI:2158879 NCBI chr12:22,001,300...22,028,452
Ensembl chr12:22,001,336...22,028,454
JBrowse link
DNA duplex unwinding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ANXA1 annexin A1 involved_in IBA
ISO
(PMID:21873635) GO_Central
RGD
PMID:20655937 PMID:21873635 RGD:7421590 NCBI chr 1:226,414,200...226,431,963
Ensembl chr 1:226,414,307...226,432,287
JBrowse link
G ASCC3 activating signal cointegrator 1 complex subunit 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:67,331,939...67,657,080
Ensembl chr 1:67,331,941...67,657,085
JBrowse link
G ATRX ATRX chromatin remodeler involved_in IEA GOC GO_REF:0000108 NCBI chr  X:61,584,028...61,872,341
Ensembl chr  X:61,584,848...61,872,288
JBrowse link
G BLM BLM RecQ like helicase involved_in IEA
IBA
(PMID:21873635) GOC
GO_Central
Ensembl
PMID:21873635 GO_REF:0000107 GO_REF:0000108 NCBI chr 7:53,317,515...53,412,649
Ensembl chr 7:53,317,540...53,412,647
JBrowse link
G BRIP1 BRCA1 interacting helicase 1 involved_in IEA GOC GO_REF:0000108 NCBI chr12:36,498,138...36,639,847
Ensembl chr12:36,443,697...36,634,088
JBrowse link
G CHD1 chromodomain helicase DNA binding protein 1 involved_in IEA GOC GO_REF:0000108 NCBI chr 2:105,113,149...105,205,303
Ensembl chr 2:105,113,668...105,203,152
JBrowse link
G CHD1L chromodomain helicase DNA binding protein 1 like involved_in IEA GOC GO_REF:0000108 NCBI chr 4:100,264,963...100,425,728
Ensembl chr 4:100,264,967...100,436,529
JBrowse link
G CHD2 chromodomain helicase DNA binding protein 2 involved_in IEA GOC GO_REF:0000108 NCBI chr 7:85,980,759...86,107,886 JBrowse link
G CHD3 chromodomain helicase DNA binding protein 3 involved_in IEA GOC GO_REF:0000108 NCBI chr12:53,135,767...53,163,244
Ensembl chr12:53,112,230...53,165,653
JBrowse link
G CHD4 chromodomain helicase DNA binding protein 4 involved_in IEA GOC GO_REF:0000108 NCBI chr 5:64,071,627...64,105,212
Ensembl chr 5:64,072,697...64,105,198
JBrowse link
G CHD5 chromodomain helicase DNA binding protein 5 involved_in IEA GOC GO_REF:0000108 NCBI chr 6:67,017,410...67,086,685
Ensembl chr 6:67,017,425...67,087,043
JBrowse link
G CHD6 chromodomain helicase DNA binding protein 6 involved_in IEA GOC GO_REF:0000108 NCBI chr17:44,048,056...44,265,472
Ensembl chr17:44,047,803...44,265,431
JBrowse link
G CHD7 chromodomain helicase DNA binding protein 7 involved_in IEA GOC GO_REF:0000108 NCBI chr 4:72,572,455...72,754,443
Ensembl chr 4:72,571,874...72,754,432
JBrowse link
G CHD8 chromodomain helicase DNA binding protein 8 involved_in IEA GOC GO_REF:0000108 NCBI chr 7:77,719,476...77,780,148
Ensembl chr 7:77,719,554...77,780,147
JBrowse link
G CHD9 chromodomain helicase DNA binding protein 9 involved_in IEA GOC GO_REF:0000108 NCBI chr 6:31,829,870...32,071,975
Ensembl chr 6:31,830,505...32,013,734
JBrowse link
G CHTF18 chromosome transmission fidelity factor 18 involved_in IEA GOC GO_REF:0000108 NCBI chr 3:41,000,688...41,009,588
Ensembl chr 3:40,996,991...41,009,562
JBrowse link
G DDX1 DEAD-box helicase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:121,818,400...121,856,667
Ensembl chr 3:121,818,406...121,853,958
JBrowse link
G DDX11 DEAD/H-box helicase 11 involved_in IBA
IEA
(PMID:21873635) GO_Central
GOC
PMID:21873635 GO_REF:0000108 NCBI chr 5:67,359,399...67,395,739
Ensembl chr 5:67,321,132...67,397,111
JBrowse link
G DDX3X DEAD-box helicase 3 X-linked involved_in IEA GOC GO_REF:0000108 NCBI chr  X:36,988,031...37,005,496
Ensembl chr  X:36,988,031...37,044,769
JBrowse link
G DHX36 DEAH-box helicase 36 involved_in IEA GOC GO_REF:0000108 NCBI chr13:94,298,790...94,350,333
Ensembl chr13:94,298,790...94,350,312
JBrowse link
G DHX9 DExH-box helicase 9 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:124,141,929...124,183,838
Ensembl chr 9:124,093,667...124,185,352
JBrowse link
G DNA2 DNA replication helicase/nuclease 2 involved_in IEA GOC GO_REF:0000108 NCBI chr14:71,550,405...71,607,067
Ensembl chr14:71,549,815...71,651,089
JBrowse link
G DSCC1 DNA replication and sister chromatid cohesion 1 involved_in IEA GOC GO_REF:0000108 NCBI chr 4:19,161,063...19,180,002
Ensembl chr 4:19,161,006...19,267,412
JBrowse link
G ERCC2 ERCC excision repair 2, TFIIH core complex helicase subunit involved_in IEA GOC GO_REF:0000108 NCBI chr 6:51,734,318...51,757,508
Ensembl chr 6:51,734,319...51,779,624
JBrowse link
G ERCC3 ERCC excision repair 3, TFIIH core complex helicase subunit involved_in IEA GOC GO_REF:0000108 NCBI chr15:25,189,644...25,224,381
Ensembl chr15:25,189,663...25,228,066
JBrowse link
G FANCM FA complementation group M involved_in IEA GOC GO_REF:0000108 NCBI chr 1:175,333,965...175,402,065
Ensembl chr 1:175,334,047...175,445,650
JBrowse link
G FBH1 F-box DNA helicase 1 involved_in IEA GOC GO_REF:0000108 NCBI chr10:65,060,714...65,108,975
Ensembl chr10:64,955,189...65,108,380
JBrowse link
G G3BP1 G3BP stress granule assembly factor 1 involved_in IEA GOC GO_REF:0000108 NCBI chr16:71,236,025...71,276,111
Ensembl chr16:71,236,025...71,276,078
JBrowse link
G GTF2F2 general transcription factor IIF subunit 2 involved_in IEA GOC GO_REF:0000108 NCBI chr11:21,987,410...22,144,921
Ensembl chr11:21,983,822...22,144,954
JBrowse link
G HELB DNA helicase B involved_in IEA GOC GO_REF:0000108 NCBI chr 5:30,645,378...30,696,488
Ensembl chr 5:30,645,634...30,697,232
JBrowse link
G HELQ helicase, POLQ like involved_in IEA GOC GO_REF:0000108 NCBI chr 8:135,026,117...135,061,051
Ensembl chr 8:135,026,315...135,061,162
JBrowse link
G HFM1 helicase for meiosis 1 involved_in IEA GOC GO_REF:0000108 NCBI chr 4:125,522,300...125,614,296
Ensembl chr 4:125,522,317...125,606,882
JBrowse link
G IGHMBP2 immunoglobulin mu DNA binding protein 2 involved_in IEA GOC GO_REF:0000108 NCBI chr 2:4,169,510...4,194,699 JBrowse link
G MCM3 minichromosome maintenance complex component 3 involved_in IEA InterPro GO_REF:0000002 NCBI chr 7:46,084,648...46,104,425
Ensembl chr 7:46,084,661...46,104,375
JBrowse link
G MCM4 minichromosome maintenance complex component 4 involved_in IEA InterPro GO_REF:0000002 NCBI chr 4:79,674,737...79,686,964
Ensembl chr 4:79,674,737...79,687,307
JBrowse link
G MCM5 minichromosome maintenance complex component 5 involved_in IEA InterPro GO_REF:0000002
G MCM6 minichromosome maintenance complex component 6 involved_in IEA InterPro GO_REF:0000002 NCBI chr15:15,923,638...15,978,587
Ensembl chr15:15,917,042...15,985,405
JBrowse link
G MCM7 minichromosome maintenance complex component 7 involved_in IEA InterPro GO_REF:0000002 NCBI chr 3:8,005,890...8,014,047
Ensembl chr 3:8,005,900...8,014,053
JBrowse link
G MCM8 minichromosome maintenance 8 homologous recombination repair factor involved_in IEA InterPro GO_REF:0000002 NCBI chr17:14,790,398...14,837,420 JBrowse link
G MCM9 minichromosome maintenance 9 homologous recombination repair factor involved_in ISO (PMID:26300262) UniProt PMID:26300262 NCBI chr 1:43,171,906...43,268,533 JBrowse link
G MCMDC2 minichromosome maintenance domain containing 2 involved_in IEA InterPro GO_REF:0000002 NCBI chr 4:67,850,585...67,892,438
Ensembl chr 4:67,847,817...67,895,867
JBrowse link
G MRE11 MRE11 homolog, double strand break repair nuclease involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:26,572,352...26,634,596
Ensembl chr 9:26,572,360...26,634,568
JBrowse link
G NAV2 neuron navigator 2 involved_in IEA GOC GO_REF:0000108 NCBI chr 2:39,263,939...40,083,539
Ensembl chr 2:39,266,913...40,077,925
JBrowse link
G NBN nibrin involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 4:46,787,664...46,854,331
Ensembl chr 4:46,787,659...46,903,999
JBrowse link
G PIF1 PIF1 5'-to-3' DNA helicase involved_in IBA
IEA
(PMID:21873635) GO_Central
GOC
PMID:21873635 GO_REF:0000108 NCBI chr 1:107,218,580...107,227,171
Ensembl chr 1:107,218,657...107,227,171
JBrowse link
G POLQ DNA polymerase theta involved_in IEA GOC GO_REF:0000108 NCBI chr13:138,962,634...139,108,499
Ensembl chr13:138,978,463...139,108,502
JBrowse link
G POT1 protection of telomeres 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr18:22,885,704...22,981,893
Ensembl chr18:22,827,029...22,981,890
JBrowse link
G RAD50 RAD50 double strand break repair protein involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 2:134,844,460...134,939,188 JBrowse link
G RECQL RecQ like helicase involved_in IEA
IBA
(PMID:21873635) GOC
GO_Central
PMID:21873635 GO_REF:0000108 NCBI chr 5:51,953,460...51,995,619
Ensembl chr 5:51,953,184...52,003,742
JBrowse link
G RECQL4 RecQ like helicase 4 involved_in ISO (PMID:19177149) UniProt PMID:19177149 NCBI chr 4:287,206...293,629 JBrowse link
G RECQL5 RecQ like helicase 5 involved_in IEA
IBA
(PMID:21873635) GOC
GO_Central
PMID:21873635 GO_REF:0000108 NCBI chr12:5,732,336...5,770,136
Ensembl chr12:5,732,348...5,770,136
JBrowse link
G RFC2 replication factor C subunit 2 involved_in IEA GOC GO_REF:0000108 NCBI chr 3:11,373,489...11,392,690
Ensembl chr 3:11,373,489...11,392,695
JBrowse link
G RFC3 replication factor C subunit 3 involved_in IEA GOC GO_REF:0000108 NCBI chr11:10,145,927...10,524,472
Ensembl chr11:10,145,974...10,527,268
JBrowse link
G RFC4 replication factor C subunit 4 involved_in IEA GOC GO_REF:0000108 NCBI chr13:124,589,292...124,604,421
Ensembl chr13:124,589,295...124,604,426
JBrowse link
G RFC5 replication factor C subunit 5 involved_in IEA GOC GO_REF:0000108 NCBI chr14:34,630,374...34,642,598
Ensembl chr14:34,613,943...34,642,588
JBrowse link
G RTEL1 regulator of telomere elongation helicase 1 involved_in IBA
IEA
(PMID:21873635) GO_Central
GOC
PMID:21873635 GO_REF:0000108 NCBI chr17:62,611,844...62,636,628 JBrowse link
G RUVBL1 RuvB like AAA ATPase 1 involved_in IEA GOC GO_REF:0000108 NCBI chr13:72,196,219...72,246,514
Ensembl chr13:72,200,511...72,248,582
JBrowse link
G RUVBL2 RuvB like AAA ATPase 2 involved_in IEA GOC GO_REF:0000108 NCBI chr 6:54,250,494...54,263,492
Ensembl chr 6:54,250,515...54,266,893
JBrowse link
G SUPV3L1 Suv3 like RNA helicase involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:72,245,526...72,272,948
Ensembl chr14:72,245,600...72,277,049
JBrowse link
G TMEM169 transmembrane protein 169 involved_in IEA GOC GO_REF:0000108 NCBI chr15:118,335,915...118,352,713
Ensembl chr15:118,335,925...118,452,296
JBrowse link
G TREX1 three prime repair exonuclease 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5637600|PMID:25848017) Ensembl
MGI
PMID:25848017 GO_REF:0000107 MGI:5637600 NCBI chr13:31,177,604...31,180,764
Ensembl chr13:31,178,601...31,180,592
JBrowse link
G TWNK twinkle mtDNA helicase involved_in IEA GOC GO_REF:0000108 NCBI chr14:112,068,463...112,076,169
Ensembl chr14:112,066,846...112,075,822
JBrowse link
G WRN WRN RecQ like helicase involved_in IEA
IBA
(PMID:21873635) GOC
GO_Central
PMID:21873635 GO_REF:0000108 NCBI chr15:53,966,968...54,094,855
Ensembl chr15:53,966,972...54,094,587
JBrowse link
G WRNIP1 WRN helicase interacting protein 1 involved_in IEA GOC GO_REF:0000108 NCBI chr 7:1,656,952...1,667,885
Ensembl chr 7:1,656,442...1,667,879
JBrowse link
G XRCC5 X-ray repair cross complementing 5 involved_in IEA GOC GO_REF:0000108 NCBI chr15:118,354,943...118,451,974
Ensembl chr15:118,335,925...118,452,296
JBrowse link
G XRCC6 X-ray repair cross complementing 6 involved_in IEA GOC GO_REF:0000108 NCBI chr 5:6,903,496...6,929,162
Ensembl chr 5:6,903,496...6,929,083
JBrowse link
DNA geometric change term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HMGB1 high mobility group box 1 involved_in
acts_upstream_of_or_within
ISS
ISO
PMID:10962007 AgBase
MGI
PMID:10962007 GO_REF:0000024 RGD:8554262 NCBI chr11:7,195,556...7,321,071 JBrowse link
G HMGB2 high mobility group box 2 involved_in ISS AgBase GO_REF:0000024 NCBI chr14:16,709,966...16,712,288
Ensembl chr14:16,710,047...16,717,126
JBrowse link
G MTERF1 mitochondrial transcription termination factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:71,287,587...71,853,866
Ensembl chr 9:71,843,231...71,853,845
JBrowse link
DNA packaging term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LOC100152135 histone H2B type 1-A-like acts_upstream_of_or_within ISO (MGI:3702345|PMID:17261847) MGI PMID:17261847 MGI:3702345 NCBI chr 7:20,465,043...20,466,398
Ensembl chr 7:20,465,129...20,465,512
JBrowse link
G PRM2 protamine 2 involved_in IEA InterPro GO_REF:0000002 NCBI chr 3:31,864,350...31,864,959
Ensembl chr 3:31,864,323...31,865,023
JBrowse link
DNA replication-dependent chromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ASF1A anti-silencing function 1A histone chaperone involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 1:43,200,339...43,215,019
Ensembl chr 1:43,200,414...43,214,913
JBrowse link
G ASF1B anti-silencing function 1B histone chaperone involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 2:65,063,186...65,072,681
Ensembl chr 2:65,062,766...65,072,681
JBrowse link
G CHAF1A chromatin assembly factor 1 subunit A involved_in IEA Ensembl GO_REF:0000107 NCBI chr 2:74,380,706...74,411,875
Ensembl chr 2:74,380,708...74,411,825
JBrowse link
G CHAF1B chromatin assembly factor 1 subunit B involved_in IEA Ensembl GO_REF:0000107 NCBI chr13:200,048,096...200,074,902
Ensembl chr13:200,048,131...200,072,556
JBrowse link
G HAT1 histone acetyltransferase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr15:78,022,147...78,079,669
Ensembl chr15:78,022,154...78,079,665
JBrowse link
G HIST1H3E histone cluster 1, H3e involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:20,853,945...20,855,172
Ensembl chr 7:20,896,374...20,896,784
JBrowse link
G IPO4 importin 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:75,103,971...75,110,027
Ensembl chr 7:75,100,272...75,118,741
JBrowse link
G IPO4 importin 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:75,109,844...75,118,739
Ensembl chr 7:75,100,272...75,118,741
JBrowse link
G LOC106504121 histone H3.1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:20,872,535...20,875,411
Ensembl chr 7:20,896,374...20,896,784
JBrowse link
G LOC110261477 histone H4 involved_in ISO (PMID:14718166) UniProt PMID:14718166 NCBI chr 7:20,773,579...20,773,986 JBrowse link
G LOC110261673 histone H4 involved_in ISO (PMID:14718166) UniProt PMID:14718166 NCBI chr 7:20,910,487...20,912,374
Ensembl chr 7:20,908,345...20,912,379
JBrowse link
G LOC110261674 histone H4 involved_in ISO (PMID:14718166) UniProt PMID:14718166 NCBI chr 7:21,224,973...21,225,379 JBrowse link
G NASP nuclear autoantigenic sperm protein involved_in
acts_upstream_of_or_within
IBA
ISO
IEA
(PMID:21873635)
(MGI:3694318|PMID:16728391)
GO_Central
UniProt
Ensembl
PMID:16728391 PMID:21873635 GO_REF:0000107 MGI:3694318 NCBI chr 6:165,773,964...165,804,978
Ensembl chr 6:165,770,055...165,805,369
JBrowse link
G RBBP4 RB binding protein 4, chromatin remodeling factor involved_in ISO (PMID:14718166) UniProt PMID:14718166 NCBI chr 6:88,987,092...89,006,815 JBrowse link
DNA replication-independent chromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ASF1A anti-silencing function 1A histone chaperone involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 1:43,200,339...43,215,019
Ensembl chr 1:43,200,414...43,214,913
JBrowse link
G ASF1B anti-silencing function 1B histone chaperone involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 2:65,063,186...65,072,681
Ensembl chr 2:65,062,766...65,072,681
JBrowse link
G ATRX ATRX chromatin remodeler involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:61,584,028...61,872,341
Ensembl chr  X:61,584,848...61,872,288
JBrowse link
G CABIN1 calcineurin binding protein 1 involved_in IEA InterPro
Ensembl
GO_REF:0000002 GO_REF:0000107 NCBI chr14:49,686,196...49,787,723
Ensembl chr14:49,686,197...49,787,688
JBrowse link
G H3-3A H3 histone, family 3A involved_in ISO (PMID:14718166) UniProt PMID:14718166 NCBI chr10:13,939,938...13,947,976
Ensembl chr10:13,939,594...13,948,000
JBrowse link
G HAT1 histone acetyltransferase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr15:78,022,147...78,079,669
Ensembl chr15:78,022,154...78,079,665
JBrowse link
G HIRA histone cell cycle regulator involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr14:51,029,117...51,102,409
Ensembl chr14:51,029,126...51,102,506
JBrowse link
G IPO4 importin 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:75,103,971...75,110,027
Ensembl chr 7:75,100,272...75,118,741
JBrowse link
G IPO4 importin 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:75,109,844...75,118,739
Ensembl chr 7:75,100,272...75,118,741
JBrowse link
G LOC100521680 histone H3.3 involved_in ISO (PMID:14718166) UniProt PMID:14718166 NCBI chr12:5,632,326...5,634,977
Ensembl chr12:5,632,365...5,634,726
JBrowse link
G LOC110261477 histone H4 involved_in ISO (PMID:14718166) UniProt PMID:14718166 NCBI chr 7:20,773,579...20,773,986 JBrowse link
G LOC110261673 histone H4 involved_in ISO (PMID:14718166) UniProt PMID:14718166 NCBI chr 7:20,910,487...20,912,374
Ensembl chr 7:20,908,345...20,912,379
JBrowse link
G LOC110261674 histone H4 involved_in ISO (PMID:14718166) UniProt PMID:14718166 NCBI chr 7:21,224,973...21,225,379 JBrowse link
G NASP nuclear autoantigenic sperm protein involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:165,773,964...165,804,978
Ensembl chr 6:165,770,055...165,805,369
JBrowse link
G RBBP4 RB binding protein 4, chromatin remodeling factor involved_in ISO (PMID:14718166) UniProt PMID:14718166 NCBI chr 6:88,987,092...89,006,815 JBrowse link
G UBN1 ubinuclein 1 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 3:37,512,306...37,555,255
Ensembl chr 3:37,512,314...37,555,185
JBrowse link
G UBN2 ubinuclein 2 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr18:10,371,121...10,451,243
Ensembl chr18:10,381,209...10,451,255
JBrowse link
DNA rewinding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ZRANB3 zinc finger RANBP2-type containing 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr15:16,414,291...16,727,659
Ensembl chr15:16,414,757...16,727,842
JBrowse link
DNA topological change term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ERCC3 ERCC excision repair 3, TFIIH core complex helicase subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chr15:25,189,644...25,224,381
Ensembl chr15:25,189,663...25,228,066
JBrowse link
G HMGB2 high mobility group box 2 involved_in IDA (PMID:11275566) AgBase PMID:11275566 NCBI chr14:16,709,966...16,712,288
Ensembl chr14:16,710,047...16,717,126
JBrowse link
G TOP1 DNA topoisomerase I involved_in
acts_upstream_of_or_within
IBA
ISO
(PMID:21873635)
(MGI:3612364|PMID:16261531), (MGI:70738|PMID:7842491)
GO_Central
MGI
RGD
PMID:1332866 PMID:7842491 PMID:16261531 PMID:21873635 MGI:3612364 MGI:70738 RGD:1580856 NCBI chr17:43,710,270...43,799,700
Ensembl chr17:43,710,290...43,799,700
JBrowse link
G TOP1MT DNA topoisomerase I mitochondrial involved_in IBA
IEA
(PMID:21873635) GO_Central
UniProt
PMID:21873635 GO_REF:0000104 NCBI chr 4:1,134,179...1,188,149 JBrowse link
G TOP2A DNA topoisomerase II alpha involved_in
acts_upstream_of_or_within
IEA
ISO
ISS
(MGI:51613|PMID:1331984), (MGI:895157|PMID:9224616) UniProt
MGI
RGD
PMID:1331984 PMID:9224616 PMID:11334111 GO_REF:0000024 GO_REF:0000104 MGI:51613 MGI:895157 RGD:1580614 NCBI chr12:22,001,300...22,028,452
Ensembl chr12:22,001,336...22,028,454
JBrowse link
G TOP2B DNA topoisomerase II beta involved_in IEA UniProt GO_REF:0000104 NCBI chr13:12,507,738...12,575,042
Ensembl chr13:12,507,138...12,575,583
JBrowse link
G TOP3A DNA topoisomerase III alpha involved_in IBA
IEA
(PMID:21873635) GO_Central
InterPro
PMID:21873635 GO_REF:0000002 NCBI chr12:60,443,592...60,468,968
Ensembl chr12:60,443,731...60,469,040
JBrowse link
DNA unwinding involved in DNA replication term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BLM BLM RecQ like helicase involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 7:53,317,515...53,412,649
Ensembl chr 7:53,317,540...53,412,647
JBrowse link
G MCM2 minichromosome maintenance complex component 2 involved_in
acts_upstream_of_or_within
IBA
ISO
IEA
(PMID:21873635)
(MGI:2156014|PMID:10531422)
GO_Central
MGI
UniProt
PMID:10531422 PMID:21873635 GO_REF:0000104 MGI:2156014 NCBI chr13:72,630,378...72,651,270
Ensembl chr13:72,630,380...72,657,620
JBrowse link
G MCM4 minichromosome maintenance complex component 4 involved_in
acts_upstream_of_or_within
IBA
ISO
(PMID:21873635)
(MGI:3582148|PMID:15917436)
GO_Central
MGI
PMID:15917436 PMID:21873635 MGI:3582148 NCBI chr 4:79,674,737...79,686,964
Ensembl chr 4:79,674,737...79,687,307
JBrowse link
G MCM6 minichromosome maintenance complex component 6 involved_in
acts_upstream_of_or_within
IBA
ISO
(PMID:21873635)
(MGI:3582148|PMID:15917436)
GO_Central
MGI
PMID:15917436 PMID:21873635 MGI:3582148 NCBI chr15:15,923,638...15,978,587
Ensembl chr15:15,917,042...15,985,405
JBrowse link
G MCM7 minichromosome maintenance complex component 7 involved_in
acts_upstream_of_or_within
IBA
ISO
(PMID:21873635)
(MGI:3582148|PMID:15917436)
GO_Central
MGI
PMID:15917436 PMID:21873635 MGI:3582148 NCBI chr 3:8,005,890...8,014,047
Ensembl chr 3:8,005,900...8,014,053
JBrowse link
G PURA purine rich element binding protein A involved_in IEA Ensembl GO_REF:0000107 NCBI chr 2:141,877,775...141,899,259
Ensembl chr 2:141,884,354...141,886,330
JBrowse link
G RAD51 RAD51 recombinase involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:130,592,414...130,640,326
Ensembl chr 1:130,586,647...130,640,136
JBrowse link
G RECQL RecQ like helicase involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 5:51,953,460...51,995,619
Ensembl chr 5:51,953,184...52,003,742
JBrowse link
G RECQL5 RecQ like helicase 5 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr12:5,732,336...5,770,136
Ensembl chr12:5,732,348...5,770,136
JBrowse link
G SSBP1 single stranded DNA binding protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr18:8,084,292...8,167,983
Ensembl chr18:8,151,029...8,167,971
JBrowse link
G TWNK twinkle mtDNA helicase involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:2136707|PMID:11431692) Ensembl
MGI
PMID:11431692 GO_REF:0000107 MGI:2136707 NCBI chr14:112,068,463...112,076,169
Ensembl chr14:112,066,846...112,075,822
JBrowse link
G WRN WRN RecQ like helicase involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr15:53,966,968...54,094,855
Ensembl chr15:53,966,972...54,094,587
JBrowse link
G-quadruplex DNA unwinding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BLM BLM RecQ like helicase involved_in IEA
IBA
(PMID:21873635) Ensembl
GO_Central
PMID:21873635 GO_REF:0000107 NCBI chr 7:53,317,515...53,412,649
Ensembl chr 7:53,317,540...53,412,647
JBrowse link
G DDX11 DEAD/H-box helicase 11 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:67,359,399...67,395,739
Ensembl chr 5:67,321,132...67,397,111
JBrowse link
G DHX36 DEAH-box helicase 36 involved_in IEA Ensembl GO_REF:0000107 NCBI chr13:94,298,790...94,350,333
Ensembl chr13:94,298,790...94,350,312
JBrowse link
G DHX9 DExH-box helicase 9 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:124,141,929...124,183,838
Ensembl chr 9:124,093,667...124,185,352
JBrowse link
G HNRNPA2B1 heterogeneous nuclear ribonucleoprotein A2/B1 involved_in ISO PMID:23184978 BHF-UCL PMID:23184978 RGD:11567256 NCBI chr18:46,205,164...46,215,861
Ensembl chr18:46,205,418...46,215,858
JBrowse link
G WRN WRN RecQ like helicase involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr15:53,966,968...54,094,855
Ensembl chr15:53,966,972...54,094,587
JBrowse link
histone H3-S10 phosphorylation involved in chromosome condensation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CCNB1 cyclin B1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5494393|PMID:22053081) Ensembl
MGI
PMID:22053081 GO_REF:0000107 MGI:5494393 NCBI chr16:47,338,239...47,348,385
Ensembl chr16:47,338,110...47,348,381
JBrowse link
G MIR744 microRNA mir-744 acts_upstream_of_or_within ISO (MGI:5494393|PMID:22053081) MGI PMID:22053081 MGI:5494393 NCBI chr12:56,464,848...56,464,927
Ensembl chr12:56,464,848...56,464,927
JBrowse link
meiotic chromosome condensation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G INCENP inner centromere protein involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 2:9,411,942...9,445,825
Ensembl chr 2:9,411,942...9,445,832
JBrowse link
G MASTL microtubule associated serine/threonine kinase like involved_in IMP (PMID:23843240) AgBase PMID:23843240 NCBI chr10:48,855,895...48,877,504
Ensembl chr10:48,856,072...48,880,475
JBrowse link
G NCAPD2 non-SMC condensin I complex subunit D2 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 5:64,136,505...64,167,410
Ensembl chr 5:64,136,505...64,167,410
JBrowse link
G NCAPD3 non-SMC condensin II complex subunit D3 involved_in IEA
IBA
(PMID:21873635) UniProt
GO_Central
PMID:21873635 GO_REF:0000104 NCBI chr 9:60,712,416...60,785,907
Ensembl chr 9:60,712,420...60,785,901
JBrowse link
G NCAPH non-SMC condensin I complex subunit H involved_in
acts_upstream_of_or_within
ISO (MGI:5784807|PMID:25961503)
(MGI:5317363|PMID:21795393)
MGI PMID:21795393 PMID:25961503 MGI:5317363 MGI:5784807 NCBI chr 3:46,852,388...46,893,008
Ensembl chr 3:46,852,392...46,899,186
JBrowse link
G NCAPH2 non-SMC condensin II complex subunit H2 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 5:222,784...233,491
Ensembl chr 5:221,466...233,475
JBrowse link
G SMC2 structural maintenance of chromosomes 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5317363|PMID:21795393) Ensembl
MGI
PMID:21795393 GO_REF:0000107 MGI:5317363 NCBI chr 1:245,409,559...245,459,032
Ensembl chr 1:245,410,146...245,484,780
JBrowse link
G SMC4 structural maintenance of chromosomes 4 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5317363|PMID:21795393) Ensembl
MGI
PMID:21795393 GO_REF:0000107 MGI:5317363 NCBI chr13:100,078,149...100,120,907
Ensembl chr13:100,078,158...100,133,166
JBrowse link
mitotic chromosome condensation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AKAP8 A-kinase anchoring protein 8 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3512088|PMID:12082153) Ensembl
MGI
PMID:12082153 GO_REF:0000107 MGI:3512088 NCBI chr 2:62,222,060...62,241,631
Ensembl chr 2:62,222,249...62,241,611
JBrowse link
G AKAP8L A-kinase anchoring protein 8 like involved_in IEA Ensembl GO_REF:0000107 NCBI chr 2:62,184,735...62,241,631
Ensembl chr 2:62,155,437...62,221,936
JBrowse link
G CDCA5 cell division cycle associated 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 2:7,103,648...7,112,772
Ensembl chr 2:7,102,982...7,113,202
JBrowse link
G CHMP1A charged multivesicular body protein 1A involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:351,878...358,655
Ensembl chr 6:351,922...358,655
JBrowse link
G NCAPD2 non-SMC condensin I complex subunit D2 involved_in IBA
IEA
(PMID:21873635) GO_Central
InterPro
PMID:21873635 GO_REF:0000002 NCBI chr 5:64,136,505...64,167,410
Ensembl chr 5:64,136,505...64,167,410
JBrowse link
G NCAPD3 non-SMC condensin II complex subunit D3 involved_in IBA
IEA
(PMID:21873635) GO_Central
UniProt
PMID:21873635 GO_REF:0000104 NCBI chr 9:60,712,416...60,785,907
Ensembl chr 9:60,712,420...60,785,901
JBrowse link
G NCAPG non-SMC condensin I complex subunit G involved_in IEA
IBA
(PMID:21873635) InterPro
GO_Central
PMID:21873635 GO_REF:0000002 NCBI chr 8:12,759,225...12,807,164
Ensembl chr 8:12,759,639...12,810,050
JBrowse link
G NCAPH non-SMC condensin I complex subunit H involved_in IEA
IBA
(PMID:21873635) InterPro
GO_Central
PMID:21873635 GO_REF:0000002 NCBI chr 3:46,852,388...46,893,008
Ensembl chr 3:46,852,392...46,899,186
JBrowse link
G NCAPH2 non-SMC condensin II complex subunit H2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:222,784...233,491
Ensembl chr 5:221,466...233,475
JBrowse link
G NUSAP1 nucleolar and spindle associated protein 1 involved_in
acts_upstream_of_or_within
IBA
ISO
(PMID:21873635)
(PMID:12963707)
GO_Central
MGI
PMID:12963707 PMID:21873635 NCBI chr 1:129,992,797...130,065,641 JBrowse link
G PHF13 PHD finger protein 13 involved_in IEA
IBA
(PMID:21873635) Ensembl
GO_Central
PMID:21873635 GO_REF:0000107 NCBI chr 6:67,445,960...67,452,144
Ensembl chr 6:67,445,977...67,454,191
JBrowse link
G SMC2 structural maintenance of chromosomes 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:245,409,559...245,459,032
Ensembl chr 1:245,410,146...245,484,780
JBrowse link
G SMC4 structural maintenance of chromosomes 4 involved_in IBA
IEA
(PMID:21873635) GO_Central
Ensembl
PMID:21873635 GO_REF:0000107 NCBI chr13:100,078,149...100,120,907
Ensembl chr13:100,078,158...100,133,166
JBrowse link
G TTN titin involved_in ISO (PMID:9548712) BHF-UCL PMID:9548712 NCBI chr15:84,226,953...84,501,320 JBrowse link
negative regulation of chromosome condensation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G H3-3A H3 histone, family 3A acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5502235|PMID:23903189) MGI
Ensembl
PMID:23903189 GO_REF:0000107 MGI:5502235 NCBI chr10:13,939,938...13,947,976
Ensembl chr10:13,939,594...13,948,000
JBrowse link
G LOC100521680 histone H3.3 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5502235|PMID:23903189) MGI
Ensembl
PMID:23903189 GO_REF:0000107 MGI:5502235 NCBI chr12:5,632,326...5,634,977
Ensembl chr12:5,632,365...5,634,726
JBrowse link
negative regulation of DNA duplex unwinding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G TOP2A DNA topoisomerase II alpha involved_in ISS
IEA
UniProt
Ensembl
GO_REF:0000024 GO_REF:0000107 NCBI chr12:22,001,300...22,028,452
Ensembl chr12:22,001,336...22,028,454
JBrowse link
negative regulation of DNA helicase activity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G MCM2 minichromosome maintenance complex component 2 involved_in IEA UniProt GO_REF:0000104 NCBI chr13:72,630,378...72,651,270
Ensembl chr13:72,630,380...72,657,620
JBrowse link
G MNAT1 MNAT1 component of CDK activating kinase involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:189,690,343...189,908,144
Ensembl chr 1:189,690,354...189,910,589
JBrowse link
negative regulation of ribosomal DNA heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PHF2 PHD finger protein 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:42,988,607...43,078,811
Ensembl chr 3:42,988,634...43,078,813
JBrowse link
G PHF8 PHD finger protein 8 involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:46,648,164...46,761,192
Ensembl chr  X:46,648,165...46,759,248
JBrowse link
nucleosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ASF1A anti-silencing function 1A histone chaperone acts_upstream_of_or_within ISO (PMID:11897662) MGI PMID:11897662 NCBI chr 1:43,200,339...43,215,019
Ensembl chr 1:43,200,414...43,214,913
JBrowse link
G ASF1B anti-silencing function 1B histone chaperone acts_upstream_of_or_within ISO (MGI:2675150|PMID:12842904) MGI PMID:12842904 MGI:2675150 NCBI chr 2:65,063,186...65,072,681
Ensembl chr 2:65,062,766...65,072,681
JBrowse link
G ATRX ATRX chromatin remodeler involved_in ISO (PMID:20651253) UniProt PMID:20651253 NCBI chr  X:61,584,028...61,872,341
Ensembl chr  X:61,584,848...61,872,288
JBrowse link
G BRD2 bromodomain containing 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:25,096,579...25,162,591
Ensembl chr 7:25,150,658...25,165,433
JBrowse link
G CHAF1B chromatin assembly factor 1 subunit B involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr13:200,048,096...200,074,902
Ensembl chr13:200,048,131...200,072,556
JBrowse link
G DAXX death domain associated protein involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 7:29,676,854...29,681,145
Ensembl chr 7:29,676,854...29,681,110
JBrowse link
G DNAJC9 DnaJ heat shock protein family (Hsp40) member C9 involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:76,064,598...76,070,301
Ensembl chr14:76,061,446...76,074,604
JBrowse link
G GRWD1 glutamate rich WD repeat containing 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:53,849,673...53,856,229
Ensembl chr 6:53,849,850...53,859,385
JBrowse link
G H1-3 H1.3 linker histone, cluster member involved_in IEA InterPro GO_REF:0000002 Ensembl chr 7:20,862,942...20,882,693 JBrowse link
G H1-4 H1.4 linker histone, cluster member involved_in IEA InterPro GO_REF:0000002 Ensembl chr 7:20,819,639...20,854,590 JBrowse link
G H1-6 H1.6 linker histone, cluster member involved_in IEA InterPro GO_REF:0000002 NCBI chr 7:20,774,135...20,777,244 JBrowse link
G H1FOO oocyte-specific H1 histone involved_in IEA InterPro GO_REF:0000002 NCBI chr13:68,921,491...68,943,061
Ensembl chr13:68,938,024...68,942,744
JBrowse link
G H2AFY H2A histone family, member Y involved_in IEA UniProt GO_REF:0000104 NCBI chr 2:137,535,128...137,623,886
Ensembl chr 2:137,535,131...137,623,889
JBrowse link
G H2BC11 H2B clustered histone 11 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 Ensembl chr 7:21,219,627...21,227,153 JBrowse link
G H3-3A H3 histone, family 3A involved_in ISO (PMID:25615412)
(PMID:21636898)
UniProt PMID:21636898 PMID:25615412 NCBI chr10:13,939,938...13,947,976
Ensembl chr10:13,939,594...13,948,000
JBrowse link
G HIST1H2BD histone cluster 1, H2bd involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 7:20,821,090...20,829,491
Ensembl chr 7:20,821,091...20,829,493
JBrowse link
G HIST1H3E histone cluster 1, H3e involved_in ISO (PMID:20498094), (PMID:21636898), (PMID:24699735)
(PMID:25615412)
UniProt PMID:20498094 PMID:21636898 PMID:24699735 PMID:25615412 NCBI chr 7:20,853,945...20,855,172
Ensembl chr 7:20,896,374...20,896,784
JBrowse link
G HMGB1 high mobility group box 1 involved_in IDA (PMID:2465778) AgBase PMID:2465778 NCBI chr11:7,195,556...7,321,071 JBrowse link
G HMGB2 high mobility group box 2 involved_in IDA (PMID:2465778) AgBase PMID:2465778 NCBI chr14:16,709,966...16,712,288
Ensembl chr14:16,710,047...16,717,126
JBrowse link
G HP1BP3 heterochromatin protein 1 binding protein 3 involved_in IEA InterPro GO_REF:0000002 NCBI chr 6:78,975,551...79,007,921
Ensembl chr 6:78,975,550...79,007,214
JBrowse link
G KAT6B lysine acetyltransferase 6B involved_in IEA InterPro GO_REF:0000002 NCBI chr14:77,390,790...77,597,674
Ensembl chr14:77,375,758...77,597,674
JBrowse link
G LOC100152135 histone H2B type 1-A-like involved_in
acts_upstream_of_or_within
IBA
ISO
(PMID:21873635)
(MGI:3702345|PMID:17261847)
GO_Central
MGI
PMID:17261847 PMID:21873635 MGI:3702345 NCBI chr 7:20,465,043...20,466,398
Ensembl chr 7:20,465,129...20,465,512
JBrowse link
G LOC100152878 histone H2B type 1-A involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 7:20,467,395...20,471,314 JBrowse link
G LOC100155267 histone H2B type 2-F-like involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr14:45,760,877...45,761,561 JBrowse link
G LOC100156127 histone H2B type 1-M involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 7:20,842,185...20,842,659 JBrowse link
G LOC100156937 histone H2B type 1 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 7:20,862,784...20,863,395
Ensembl chr 7:20,897,623...20,907,522
JBrowse link
G LOC100158117 histone H4 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 7:21,595,863...21,596,243 JBrowse link
G LOC100510904 histone H1.0 involved_in IEA InterPro GO_REF:0000002 NCBI chr 5:10,038,944...10,041,242
Ensembl chr 5:10,038,951...10,041,080
JBrowse link
G LOC100515302 histone H2B type 3-B involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 2:51,687,852...51,694,237
Ensembl chr 2:51,693,136...51,693,516
JBrowse link
G LOC100517800 histone H2A-Bbd type 2/3 involved_in ISO (PMID:22795134) UniProt PMID:22795134 NCBI chr  X:125,277,575...125,280,752 JBrowse link
G LOC100519930 histone H2B subacrosomal variant-like involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr16:49,000,352...49,001,341 JBrowse link
G LOC100521680 histone H3.3 involved_in ISO (PMID:21636898)
(PMID:25615412)
UniProt PMID:21636898 PMID:25615412 NCBI chr12:5,632,326...5,634,977
Ensembl chr12:5,632,365...5,634,726
JBrowse link
G LOC100525798 nucleosome assembly protein 1-like 2 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr  X:58,969,577...59,176,807
Ensembl chr  X:58,966,830...58,972,091
JBrowse link
G LOC100625034 testis-specific Y-encoded protein 4-like involved_in IEA InterPro GO_REF:0000002 NCBI chr  Y:40,190,400...40,192,431 JBrowse link
G LOC100738859 histone H2B type 2-E involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 4:99,169,471...99,171,665
Ensembl chr 4:99,169,485...99,186,310
JBrowse link
G LOC102160938 late histone H2B.L4-like involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr18:6,017,053...6,022,069
Ensembl chr18:6,019,516...6,022,049
JBrowse link
G LOC102161782 histone H3 involved_in ISO (PMID:21636898), (PMID:25615412) UniProt PMID:21636898 PMID:25615412 NCBI chr 4:99,187,225...99,187,722 JBrowse link
G LOC102162202 histone H2B type 2-E involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 4:99,189,505...99,191,226
Ensembl chr 4:99,169,485...99,186,310
JBrowse link
G LOC106504121 histone H3.1 involved_in ISO (PMID:20498094), (PMID:21636898), (PMID:24699735)
(PMID:25615412)
UniProt PMID:20498094 PMID:21636898 PMID:24699735 PMID:25615412 NCBI chr 7:20,872,535...20,875,411
Ensembl chr 7:20,896,374...20,896,784
JBrowse link
G LOC106506652 putative testis-specific Y-encoded-like protein 3 involved_in IEA InterPro GO_REF:0000002 NCBI chr17:35,836,203...35,838,807 JBrowse link
G LOC110259305 histone H3.1 involved_in ISO (PMID:25615412)
(PMID:20498094)
UniProt PMID:20498094 PMID:25615412 NCBI chr 2:51,709,942...51,710,952 JBrowse link
G LOC110261477 histone H4 involved_in ISO (PMID:20498094), (PMID:21636898), (PMID:24699735), (PMID:25615412) UniProt PMID:20498094 PMID:21636898 PMID:24699735 PMID:25615412 NCBI chr 7:20,773,579...20,773,986 JBrowse link
G LOC110261673 histone H4 involved_in ISO (PMID:20498094), (PMID:21636898), (PMID:24699735), (PMID:25615412) UniProt PMID:20498094 PMID:21636898 PMID:24699735 PMID:25615412 NCBI chr 7:20,910,487...20,912,374
Ensembl chr 7:20,908,345...20,912,379
JBrowse link
G LOC110261674 histone H4 involved_in ISO (PMID:20498094), (PMID:21636898), (PMID:24699735), (PMID:25615412) UniProt PMID:20498094 PMID:21636898 PMID:24699735 PMID:25615412 NCBI chr 7:21,224,973...21,225,379 JBrowse link
G MACROH2A2 macroH2A.2 histone involved_in IEA UniProt GO_REF:0000104 NCBI chr14:73,002,385...73,055,228
Ensembl chr14:73,003,117...73,055,226
JBrowse link
G MCM2 minichromosome maintenance complex component 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:2156014|PMID:10531422) Ensembl
MGI
PMID:10531422 GO_REF:0000107 MGI:2156014 NCBI chr13:72,630,378...72,651,270
Ensembl chr13:72,630,380...72,657,620
JBrowse link
G NAA60 N-alpha-acetyltransferase 60, NatF catalytic subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:38,763,444...38,812,862
Ensembl chr 3:38,755,420...38,782,056
JBrowse link
G NAP1L1 nucleosome assembly protein 1 like 1 involved_in IEA
IBA
(PMID:21873635) InterPro
GO_Central
PMID:21873635 GO_REF:0000002 NCBI chr 5:39,329,628...39,363,699
Ensembl chr 5:39,328,051...39,363,711
JBrowse link
G NAP1L4 nucleosome assembly protein 1 like 4 involved_in IBA
IEA
(PMID:21873635) GO_Central
InterPro
PMID:21873635 GO_REF:0000002 NCBI chr 2:2,070,140...2,117,503
Ensembl chr 2:2,067,870...2,117,487
JBrowse link
G NASP nuclear autoantigenic sperm protein involved_in ISO (PMID:25615412) UniProt PMID:25615412 NCBI chr 6:165,773,964...165,804,978
Ensembl chr 6:165,770,055...165,805,369
JBrowse link
G NEFH neurofilament heavy chain involved_in IEA InterPro GO_REF:0000002 NCBI chr14:46,559,698...46,568,686
Ensembl chr14:46,559,860...46,569,910
JBrowse link
G NPM1 nucleophosmin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:52,767,263...52,781,862
Ensembl chr16:52,765,296...52,781,740
JBrowse link
G PADI4 peptidyl arginine deiminase 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:75,935,909...75,966,275
Ensembl chr 6:75,935,903...75,966,169
JBrowse link
G RSF1 remodeling and spacing factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:12,121,824...12,278,120
Ensembl chr 9:12,121,825...12,278,120
JBrowse link
G SART3 spliceosome associated factor 3, U4/U6 recycling protein involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:42,223,752...42,259,992
Ensembl chr14:42,223,725...42,297,113
JBrowse link
G SET SET nuclear proto-oncogene involved_in IEA InterPro GO_REF:0000002 NCBI chr 1:269,050,447...269,064,462 JBrowse link
G SHPRH SNF2 histone linker PHD RING helicase involved_in IEA InterPro GO_REF:0000002 NCBI chr 1:19,612,915...19,697,444
Ensembl chr 1:19,612,823...19,695,272
JBrowse link
G SMARCA5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:84,184,572...84,224,943
Ensembl chr 8:84,184,575...84,224,871
JBrowse link
G SMYD3 SET and MYND domain containing 3 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5500979|PMID:23752591) Ensembl
MGI
PMID:23752591 GO_REF:0000107 MGI:5500979 NCBI chr10:18,267,598...19,019,520
Ensembl chr10:18,267,603...19,019,537
JBrowse link
G SOX9 SRY-box transcription factor 9 involved_in IEA
ISS
Ensembl
UniProt
GO_REF:0000024 GO_REF:0000107 NCBI chr12:8,642,154...8,647,315
Ensembl chr12:8,642,158...8,647,315
JBrowse link
G SPTY2D1 SPT2 chromatin protein domain containing 1 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 2:40,581,816...40,604,040 JBrowse link
G TSPYL1 TSPY like 1 involved_in IEA InterPro GO_REF:0000002 NCBI chr 1:81,906,168...81,909,461
Ensembl chr 1:81,908,075...81,909,613
JBrowse link
G TSPYL2 TSPY like 2 involved_in IEA InterPro GO_REF:0000002 NCBI chr  X:45,909,688...45,916,859
Ensembl chr  X:45,909,686...45,916,941
JBrowse link
G TSPYL5 TSPY like 5 involved_in IEA InterPro GO_REF:0000002 NCBI chr 4:39,362,945...39,367,405
Ensembl chr 4:39,362,962...39,369,885
JBrowse link
nucleosome positioning term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CTCF CCCTC-binding factor involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:28,188,002...28,261,009
Ensembl chr 6:28,195,668...28,261,009
JBrowse link
G H1-2 H1.2 linker histone, cluster member acts_upstream_of_or_within ISO (MGI:2664444|PMID:12808097) MGI PMID:12808097 MGI:2664444 NCBI chr 7:20,743,716...20,744,356
Ensembl chr 7:20,743,716...20,744,356
JBrowse link
G H1-3 H1.3 linker histone, cluster member involved_in IBA (PMID:21873635) GO_Central PMID:21873635 Ensembl chr 7:20,862,942...20,882,693 JBrowse link
G H1-4 H1.4 linker histone, cluster member involved_in IBA (PMID:21873635) GO_Central PMID:21873635 Ensembl chr 7:20,819,639...20,854,590 JBrowse link
G H1-6 H1.6 linker histone, cluster member involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 7:20,774,135...20,777,244 JBrowse link
G H1FOO oocyte-specific H1 histone involved_in ISS
IBA
(PMID:21873635) UniProt
GO_Central
PMID:21873635 GO_REF:0000024 NCBI chr13:68,921,491...68,943,061
Ensembl chr13:68,938,024...68,942,744
JBrowse link
G LOC100510904 histone H1.0 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 5:10,038,944...10,041,242
Ensembl chr 5:10,038,951...10,041,080
JBrowse link
G PAF1 PAF1 homolog, Paf1/RNA polymerase II complex component involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:48,046,487...48,053,631
Ensembl chr 6:48,046,691...48,059,035
JBrowse link
G RSF1 remodeling and spacing factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:12,121,824...12,278,120
Ensembl chr 9:12,121,825...12,278,120
JBrowse link
G SMARCA5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:84,184,572...84,224,943
Ensembl chr 8:84,184,575...84,224,871
JBrowse link
nucleotide-excision repair, DNA duplex unwinding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ERCC2 ERCC excision repair 2, TFIIH core complex helicase subunit involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 6:51,734,318...51,757,508
Ensembl chr 6:51,734,319...51,779,624
JBrowse link
G ERCC3 ERCC excision repair 3, TFIIH core complex helicase subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chr15:25,189,644...25,224,381
Ensembl chr15:25,189,663...25,228,066
JBrowse link
pericentric heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CENPV centromere protein V involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr12:59,200,041...59,215,941
Ensembl chr12:59,200,031...59,209,664
JBrowse link
G DICER1 dicer 1, ribonuclease III acts_upstream_of_or_within ISO (MGI:3528782|PMID:15713842) MGI PMID:15713842 MGI:3528782 NCBI chr 7:116,361,630...116,436,471
Ensembl chr 7:116,361,630...116,436,519
JBrowse link
G H3-3A H3 histone, family 3A acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5694896|PMID:26159997) MGI
Ensembl
PMID:26159997 GO_REF:0000107 MGI:5694896 NCBI chr10:13,939,938...13,947,976
Ensembl chr10:13,939,594...13,948,000
JBrowse link
G HELLS helicase, lymphoid specific involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr14:105,923,727...105,967,003
Ensembl chr14:105,923,552...105,966,998
JBrowse link
G LOC100521680 histone H3.3 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5694896|PMID:26159997) MGI
Ensembl
PMID:26159997 GO_REF:0000107 MGI:5694896 NCBI chr12:5,632,326...5,634,977
Ensembl chr12:5,632,365...5,634,726
JBrowse link
positive regulation of DNA helicase activity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G POT1 protection of telomeres 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr18:22,885,704...22,981,893
Ensembl chr18:22,827,029...22,981,890
JBrowse link
G SSBP1 single stranded DNA binding protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr18:8,084,292...8,167,983
Ensembl chr18:8,151,029...8,167,971
JBrowse link
rDNA heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BAZ2A bromodomain adjacent to zinc finger domain 2A involved_in
acts_upstream_of_or_within
ISO (MGI:3587127|PMID:16085498), (MGI:3852313|PMID:12198165), (MGI:3852588|PMID:19578370)
(MGI:3653583|PMID:16678107)
(MGI:4462332|PMID:20168299)
UniProt
MGI
PMID:12198165 PMID:16085498 PMID:16678107 PMID:19578370 PMID:20168299 MGI:3587127 MGI:3653583 MGI:3852313 MGI:3852588 MGI:4462332 NCBI chr 5:21,932,527...21,983,033
Ensembl chr 5:21,933,894...21,983,021
JBrowse link
G BEND3 BEN domain containing 3 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 1:73,184,745...73,224,663
Ensembl chr 1:73,184,753...73,360,113
JBrowse link
G RRP8 ribosomal RNA processing 8 involved_in IBA
IEA
(PMID:21873635) GO_Central
Ensembl
PMID:21873635 GO_REF:0000107 NCBI chr 9:3,152,162...3,169,380
Ensembl chr 9:3,150,877...3,162,562
JBrowse link
G SIRT1 sirtuin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:71,091,167...71,126,351
Ensembl chr14:71,091,157...71,123,299
JBrowse link
G SMARCA5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:84,184,572...84,224,943
Ensembl chr 8:84,184,575...84,224,871
JBrowse link
G SUV39H1 SUV39H1 histone lysine methyltransferase involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:42,797,309...42,811,457
Ensembl chr  X:42,797,828...42,814,003
JBrowse link
G UBTF upstream binding transcription factor acts_upstream_of_or_within ISO (MGI:3836497|PMID:19103806) MGI PMID:19103806 MGI:3836497 NCBI chr12:18,989,833...19,006,145
Ensembl chr12:18,989,836...19,006,141
JBrowse link
regulation of chromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PARP10 poly(ADP-ribose) polymerase family member 10 involved_in ISO (PMID:15674325) UniProt PMID:15674325 NCBI chr 4:688,511...695,808 JBrowse link
G SPTY2D1 SPT2 chromatin protein domain containing 1 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 2:40,581,816...40,604,040 JBrowse link
regulation of chromosome condensation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CCNB1 cyclin B1 ISO positive regulation RGD PMID:15291744 RGD:1578405 NCBI chr16:47,338,239...47,348,385
Ensembl chr16:47,338,110...47,348,381
JBrowse link
G MCPH1 microcephalin 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:4437500|PMID:20169082) Ensembl
MGI
PMID:20169082 GO_REF:0000107 MGI:4437500 NCBI chr15:37,455,186...37,674,971
Ensembl chr15:37,455,526...37,673,663
JBrowse link
G WAPL WAPL cohesin release factor involved_in
acts_upstream_of_or_within
IBA
ISO
IEA
(PMID:21873635)
(MGI:5544860|PMID:23975099)
GO_Central
MGI
Ensembl
PMID:21873635 PMID:23975099 GO_REF:0000107 MGI:5544860 NCBI chr14:87,492,452...87,588,678
Ensembl chr14:87,492,453...87,588,570
JBrowse link
regulation of DNA helicase activity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G POT1 protection of telomeres 1 involved_in ISO (PMID:19734539) BHF-UCL PMID:19734539 NCBI chr18:22,885,704...22,981,893
Ensembl chr18:22,827,029...22,981,890
JBrowse link
regulation of ribosomal DNA heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G H2AFY H2A histone family, member Y NOT|involved_in ISO (PMID:24071584) UniProt PMID:24071584 NCBI chr 2:137,535,128...137,623,886
Ensembl chr 2:137,535,131...137,623,889
JBrowse link
sperm chromatin condensation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FSHR follicle stimulating hormone receptor acts_upstream_of_or_within ISO (MGI:1855818|PMID:10775161) MGI PMID:10775161 MGI:1855818 NCBI chr 3:91,607,236...91,775,255
Ensembl chr 3:91,607,305...91,774,683
JBrowse link
G LOC100516553 testis-specific H1 histone involved_in ISO (MGI:3531623|PMID:15710904) UniProt PMID:15710904 MGI:3531623 NCBI chr 5:78,699,291...78,700,227
Ensembl chr 5:78,699,128...78,700,333
JBrowse link
G SELENOF selenoprotein F ISO RGD PMID:11344099 RGD:728803 NCBI chr 4:129,258,943...129,287,727
Ensembl chr 4:129,258,944...129,287,720
JBrowse link
G SYCP1 synaptonemal complex protein 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5315075|PMID:22164254) Ensembl
MGI
PMID:22164254 GO_REF:0000107 MGI:5315075 NCBI chr 4:105,592,354...105,730,413
Ensembl chr 4:105,592,691...105,729,774
JBrowse link
G SYCP3 synaptonemal complex protein 3 acts_upstream_of_or_within ISO (MGI:5315075|PMID:22164254) MGI PMID:22164254 MGI:5315075 NCBI chr 5:82,492,744...82,501,068
Ensembl chr 5:82,493,142...82,501,225
JBrowse link
G TSSK6 testis specific serine kinase 6 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 2:58,411,122...58,411,943
Ensembl chr 2:58,411,122...58,411,943
JBrowse link
spermatogenesis, exchange of chromosomal proteins term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CHD5 chromodomain helicase DNA binding protein 5 involved_in ISO (MGI:5559810|PMID:24252660) UniProt PMID:24252660 MGI:5559810 NCBI chr 6:67,017,410...67,086,685
Ensembl chr 6:67,017,425...67,087,043
JBrowse link
G FSHR follicle stimulating hormone receptor acts_upstream_of_or_within ISO (MGI:2682484|PMID:14680821) MGI PMID:14680821 MGI:2682484 NCBI chr 3:91,607,236...91,775,255
Ensembl chr 3:91,607,305...91,774,683
JBrowse link
G LOC100152135 histone H2B type 1-A-like involved_in ISO (MGI:5502464|PMID:23884607) UniProt PMID:23884607 MGI:5502464 NCBI chr 7:20,465,043...20,466,398
Ensembl chr 7:20,465,129...20,465,512
JBrowse link
G PIWIL1 piwi like RNA-mediated gene silencing 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:24,729,346...24,760,056
Ensembl chr14:24,730,053...24,760,013
JBrowse link
G PSME4 proteasome activator subunit 4 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 3:87,231,510...87,337,709
Ensembl chr 3:87,231,534...87,337,703
JBrowse link
G RNF8 ring finger protein 8 involved_in ISO (MGI:5905675|PMID:28552346) UniProt PMID:28552346 MGI:5905675 NCBI chr 7:32,931,786...32,969,536
Ensembl chr 7:32,931,786...33,063,739
JBrowse link
G SYCP3 synaptonemal complex protein 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:82,492,744...82,501,068
Ensembl chr 5:82,493,142...82,501,225
JBrowse link
G TNP1 transition protein 1 involved_in ISS UniProt GO_REF:0000024 NCBI chr15:119,037,492...119,038,099
Ensembl chr15:119,037,496...119,038,105
JBrowse link
G TNP2 transition protein 2 involved_in ISS UniProt GO_REF:0000024 NCBI chr 3:31,868,517...31,871,530
Ensembl chr 3:31,870,068...31,871,702
JBrowse link

Term paths to the root
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Term Annotations click to browse term
  biological_process 16581
    cellular process 15867
      cellular component organization or biogenesis 5898
        cellular component organization 5722
          organelle organization 3503
            chromosome organization 807
              DNA conformation change 215
                DNA geometric change + 77
                DNA packaging + 138
                DNA topological change 7
paths to the root