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ONTOLOGY REPORT - ANNOTATIONS


Term:DNA conformation change
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Accession:GO:0071103 term browser browse the term
Definition:A cellular process that results in a change in the spatial configuration of a DNA molecule. A conformation change can bend DNA, or alter the, twist, writhe, or linking number of a DNA molecule.
Synonyms:exact_synonym: DNA conformation modification



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DNA conformation change term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ABL1 ABL proto-oncogene 1, non-receptor tyrosine kinase involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:53,118,462...53,262,092
Ensembl chr 9:53,119,641...53,261,307
JBrowse link
G HHEX hematopoietically expressed homeobox involved_in IEA Ensembl GO_REF:0000107 NCBI chr28:7,057,379...7,063,326
Ensembl chr28:7,057,283...7,063,330
JBrowse link
apoptotic chromosome condensation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACIN1 apoptotic chromatin condensation inducer 1 involved_in ISO (PMID:10490026) UniProt PMID:10490026 NCBI chr 8:3,370,469...3,405,710
Ensembl chr 8:3,371,004...3,405,682
JBrowse link
G DFFB DNA fragmentation factor subunit beta involved_in ISO (PMID:10959840) UniProt PMID:10959840 NCBI chr 5:58,340,183...58,355,353
Ensembl chr 5:58,339,634...58,354,326
JBrowse link
G ERN2 endoplasmic reticulum to nucleus signaling 2 involved_in ISO (PMID:11175748) UniProt PMID:11175748 NCBI chr 6:22,150,275...22,165,382
Ensembl chr 6:22,150,307...22,165,614
JBrowse link
G GPER1 G protein-coupled estrogen receptor 1 involved_in ISO PMID:23907461 UniProt PMID:23907461 RGD:8553942 NCBI chr 6:15,792,072...15,796,922
Ensembl chr 6:15,792,897...15,794,051
JBrowse link
G TOP2A DNA topoisomerase II alpha involved_in ISO (PMID:10959840) UniProt PMID:10959840 NCBI chr 9:22,207,501...22,237,497
Ensembl chr 9:22,207,638...22,237,496
JBrowse link
CENP-A containing chromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CENPP centromere protein P involved_in IEA InterPro GO_REF:0000002 NCBI chr 1:98,801,384...99,019,371
Ensembl chr 1:98,799,939...99,019,334
JBrowse link
G HJURP Holliday junction recognition protein involved_in ISO (PMID:19410544), (PMID:19410545) UniProt PMID:19410544 PMID:19410545 NCBI chr25:45,215,165...45,230,603
Ensembl chr25:45,215,380...45,230,547
JBrowse link
G MIS18A MIS18 kinetochore protein A acts_upstream_of_or_within ISO (MGI:5438906|PMID:22516971) MGI PMID:22516971 MGI:5438906 NCBI chr31:27,025,657...27,039,001
Ensembl chr31:27,025,709...27,039,028
JBrowse link
G NASP nuclear autoantigenic sperm protein involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr15:14,742,008...14,782,186
Ensembl chr15:14,742,012...14,808,592
JBrowse link
G OIP5 Opa interacting protein 5 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr30:8,377,407...8,396,222
Ensembl chr30:8,381,395...8,396,096
JBrowse link
chromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CDAN1 codanin 1 involved_in ISO (PMID:22407294) UniProt PMID:22407294 NCBI chr30:9,656,408...9,668,898
Ensembl chr30:9,656,871...9,668,653
JBrowse link
G CHAF1A chromatin assembly factor 1 subunit A involved_in ISO (PMID:8858152) UniProt PMID:8858152 NCBI chr20:55,248,286...55,276,425
Ensembl chr20:55,248,288...55,276,900
JBrowse link
G CHAF1B chromatin assembly factor 1 subunit B involved_in ISO (PMID:8858152) UniProt PMID:8858152 NCBI chr31:31,599,840...31,620,436
Ensembl chr31:31,600,448...31,619,784
JBrowse link
G HMGB1 high mobility group box 1 involved_in ISO (MGI:3807115|PMID:18650382) UniProt PMID:18650382 MGI:3807115 NCBI chr25:9,431,223...9,558,167
Ensembl chr25:9,431,218...9,558,165
JBrowse link
G NOC2L NOC2 like nucleolar associated transcriptional repressor involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:56,172,399...56,185,993
Ensembl chr 5:56,172,446...56,185,932
JBrowse link
G RBBP4 RB binding protein 4, chromatin remodeling factor involved_in ISO (PMID:8858152) UniProt PMID:8858152 NCBI chr 2:68,638,459...68,660,942
Ensembl chr 2:68,638,498...68,660,910
JBrowse link
G TP53 tumor protein p53 involved_in ISO (PMID:16322561) UniProt PMID:16322561 NCBI chr 5:32,561,406...32,565,149
Ensembl chr 5:32,560,598...32,574,109
JBrowse link
chromosome condensation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BANF2 BANF family member 2 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr24:5,274,524...5,308,606
Ensembl chr24:5,274,553...5,307,433
JBrowse link
G CDK1 cyclin dependent kinase 1 ISO RGD PMID:15695611 RGD:2301352 NCBI chr 4:12,884,106...12,899,203
Ensembl chr 4:12,883,385...12,899,197
JBrowse link
G H1-2 H1.2 linker histone, cluster member involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr35:24,009,304...24,011,602 JBrowse link
G H1-4 H1.4 linker histone, cluster member involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr35:24,091,950...24,092,694 JBrowse link
G H1-6 H1.6 linker histone, cluster member involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr35:24,046,374...24,065,892
Ensembl chr35:24,044,188...24,047,810
JBrowse link
G SMC5 structural maintenance of chromosomes 5 acts_upstream_of_or_within ISO (MGI:5882483|PMID:26919979) MGI PMID:26919979 MGI:5882483 NCBI chr 1:87,192,988...87,285,678
Ensembl chr 1:87,194,867...87,285,606
JBrowse link
G TOP2A DNA topoisomerase II alpha acts_upstream_of_or_within ISO (MGI:2158879|PMID:11835580) MGI PMID:11835580 MGI:2158879 NCBI chr 9:22,207,501...22,237,497
Ensembl chr 9:22,207,638...22,237,496
JBrowse link
DNA duplex unwinding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ANXA1 annexin A1 involved_in IBA
ISO
(PMID:21873635) GO_Central
RGD
PMID:20655937 PMID:21873635 RGD:7421590 NCBI chr 1:84,744,159...84,763,011
Ensembl chr 1:84,744,163...84,763,011
JBrowse link
G ASCC3 activating signal cointegrator 1 complex subunit 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:58,590,888...58,932,677
Ensembl chr12:58,592,025...58,932,615
JBrowse link
G ATRX ATRX chromatin remodeler involved_in IEA GOC GO_REF:0000108 NCBI chr  X:59,772,067...60,107,016
Ensembl chr  X:59,774,585...60,106,980
JBrowse link
G BLM BLM RecQ like helicase involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 3:53,408,120...53,506,728
Ensembl chr 3:53,408,217...53,473,146
JBrowse link
G CHD2 chromodomain helicase DNA binding protein 2 involved_in IEA GOC GO_REF:0000108 NCBI chr 3:47,101,789...47,221,473
Ensembl chr 3:47,105,046...47,221,385
JBrowse link
G CHD6 chromodomain helicase DNA binding protein 6 involved_in IEA GOC GO_REF:0000108 NCBI chr24:29,397,320...29,601,206
Ensembl chr24:29,397,306...29,601,350
JBrowse link
G CHD7 chromodomain helicase DNA binding protein 7 involved_in IEA GOC GO_REF:0000108 NCBI chr29:11,115,865...11,284,713
Ensembl chr29:11,156,340...11,283,627
JBrowse link
G CHD9 chromodomain helicase DNA binding protein 9 involved_in IEA GOC GO_REF:0000108 NCBI chr 2:62,341,274...62,560,533
Ensembl chr 2:62,343,912...62,510,315
JBrowse link
G DDX1 DEAD-box helicase 1 involved_in ISO (PMID:18710941) UniProt PMID:18710941 NCBI chr17:11,432,060...11,467,000
Ensembl chr17:11,432,136...11,466,990
JBrowse link
G DDX11 DEAD/H-box helicase 11 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr27:42,067,845...42,102,699
Ensembl chr27:42,067,898...42,105,870
JBrowse link
G DHX9 DExH-box helicase 9 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:16,233,763...16,292,576
Ensembl chr 7:16,233,814...16,292,618
JBrowse link
G FANCM FA complementation group M involved_in IEA GOC GO_REF:0000108 NCBI chr 8:22,561,862...22,625,077
Ensembl chr 8:22,562,147...22,623,994
JBrowse link
G FBH1 F-box DNA helicase 1 involved_in IEA GOC GO_REF:0000108 NCBI chr 2:30,047,994...30,095,761
Ensembl chr 2:30,048,567...30,095,696
JBrowse link
G HELQ helicase, POLQ like involved_in IEA GOC GO_REF:0000108 NCBI chr32:7,245,867...7,290,138
Ensembl chr32:7,245,230...7,290,014
JBrowse link
G MCM3 minichromosome maintenance complex component 3 involved_in IEA InterPro GO_REF:0000002 NCBI chr12:19,924,017...19,945,576
Ensembl chr12:19,920,210...19,945,605
JBrowse link
G MCM8 minichromosome maintenance 8 homologous recombination repair factor involved_in IEA InterPro GO_REF:0000002 NCBI chr24:15,850,602...15,893,452
Ensembl chr24:15,814,770...15,893,458
JBrowse link
G MCM9 minichromosome maintenance 9 homologous recombination repair factor involved_in IEA InterPro GO_REF:0000002 NCBI chr 1:58,746,637...58,862,550
Ensembl chr 1:58,767,159...58,859,282
JBrowse link
G MRE11 MRE11 homolog, double strand break repair nuclease involved_in IEA Ensembl GO_REF:0000107 NCBI chr21:6,448,909...6,528,185
Ensembl chr21:6,449,822...6,527,119
JBrowse link
G NBN nibrin involved_in ISO (PMID:15790808) BHF-UCL PMID:15790808 NCBI chr29:35,416,093...35,477,569
Ensembl chr29:35,416,093...35,477,563
JBrowse link
G POT1 protection of telomeres 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:10,987,385...11,067,473
Ensembl chr14:10,987,494...11,066,956
JBrowse link
G RAD50 RAD50 double strand break repair protein involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr11:20,836,863...20,928,930
Ensembl chr11:20,836,879...20,928,819
JBrowse link
G RECQL RecQ like helicase involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr27:25,590,326...25,636,304
Ensembl chr27:25,590,831...25,636,685
JBrowse link
G RECQL4 RecQ like helicase 4 involved_in ISO (PMID:19177149) UniProt PMID:19177149 NCBI chr13:37,930,906...37,936,653
Ensembl chr13:37,930,621...37,936,753
JBrowse link
G RECQL5 RecQ like helicase 5 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 9:4,902,753...4,940,442
Ensembl chr 9:4,903,477...4,940,436
JBrowse link
G RFC2 replication factor C subunit 2 involved_in IEA GOC GO_REF:0000108 NCBI chr 6:6,119,203...6,159,293
Ensembl chr 6:6,119,164...6,160,886
JBrowse link
G RFC3 replication factor C subunit 3 involved_in IEA GOC GO_REF:0000108 NCBI chr25:6,469,865...6,486,935
Ensembl chr25:6,469,867...6,486,849
JBrowse link
G RFC4 replication factor C subunit 4 involved_in IEA GOC GO_REF:0000108 NCBI chr34:19,361,024...19,377,289
Ensembl chr34:19,361,044...19,377,294
JBrowse link
G RFC5 replication factor C subunit 5 involved_in IEA GOC GO_REF:0000108 NCBI chr26:14,428,661...14,439,641
Ensembl chr26:14,428,695...14,438,986
JBrowse link
G RTEL1 regulator of telomere elongation helicase 1 involved_in ISO (MGI:5522574|PMID:24115439) BHF-UCL PMID:24115439 MGI:5522574 NCBI chr24:47,219,977...47,248,791 JBrowse link
G RUVBL1 RuvB like AAA ATPase 1 involved_in IEA GOC GO_REF:0000108 NCBI chr20:2,095,807...2,137,528
Ensembl chr20:2,095,786...2,137,579
JBrowse link
G SUPV3L1 Suv3 like RNA helicase involved_in ISO (PMID:12466530) UniProt PMID:12466530 NCBI chr 4:20,313,902...20,342,375
Ensembl chr 4:20,313,814...20,340,882
JBrowse link
G TREX1 three prime repair exonuclease 1 acts_upstream_of_or_within ISO (MGI:5637600|PMID:25848017) MGI PMID:25848017 MGI:5637600 NCBI chr20:40,624,845...40,626,840
Ensembl chr20:40,624,891...40,626,906
JBrowse link
G WRN WRN RecQ like helicase involved_in ISO (PMID:11735402), (PMID:26420422) BHF-UCL PMID:11735402 PMID:26420422 NCBI chr16:33,164,662...33,304,466
Ensembl chr16:33,167,364...33,304,625
JBrowse link
G XRCC6 X-ray repair cross complementing 6 involved_in IEA GOC GO_REF:0000108 NCBI chr10:23,637,905...23,661,618
Ensembl chr10:23,638,237...23,661,480
JBrowse link
DNA geometric change term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HMGB1 high mobility group box 1 involved_in
acts_upstream_of_or_within
ISS
ISO
PMID:10962007 AgBase
MGI
PMID:10962007 GO_REF:0000024 RGD:8554262 NCBI chr25:9,431,223...9,558,167
Ensembl chr25:9,431,218...9,558,165
JBrowse link
G HMGB2 high mobility group box 2 involved_in ISS AgBase GO_REF:0000024 NCBI chr25:23,939,024...23,941,720
Ensembl chr25:23,939,027...23,941,606
JBrowse link
G HMGB3 high mobility group box 3 involved_in ISS AgBase GO_REF:0000024 NCBI chr  X:119,152,166...119,159,803
Ensembl chr  X:119,155,786...119,159,814
JBrowse link
G MTERF1 mitochondrial transcription termination factor 1 involved_in ISO (PMID:20550934) UniProt PMID:20550934 NCBI chr14:17,537,964...17,545,554
Ensembl chr14:17,539,309...17,545,531
JBrowse link
DNA packaging term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G H2BC1 H2B clustered histone 1 acts_upstream_of_or_within ISO (MGI:3702345|PMID:17261847) MGI PMID:17261847 MGI:3702345 NCBI chr35:23,677,952...23,678,432 JBrowse link
G PRM2 protamine 2 involved_in IEA InterPro GO_REF:0000002 NCBI chr 6:31,492,208...31,492,852
Ensembl chr 6:31,492,208...31,492,852
JBrowse link
DNA replication-dependent chromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ASF1A anti-silencing function 1A histone chaperone involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 1:58,821,324...58,834,935
Ensembl chr 1:58,821,521...58,946,475
JBrowse link
G ASF1B anti-silencing function 1B histone chaperone involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr20:48,398,615...48,406,889 JBrowse link
G CHAF1A chromatin assembly factor 1 subunit A involved_in ISO (PMID:14718166) UniProt PMID:14718166 NCBI chr20:55,248,286...55,276,425
Ensembl chr20:55,248,288...55,276,900
JBrowse link
G CHAF1B chromatin assembly factor 1 subunit B involved_in ISO (PMID:14718166) UniProt PMID:14718166 NCBI chr31:31,599,840...31,620,436
Ensembl chr31:31,600,448...31,619,784
JBrowse link
G H3C1 H3 clustered histone 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr35:23,975,775...23,977,803
Ensembl chr35:23,977,201...23,977,611
JBrowse link
G H3C10 H3 clustered histone 10 involved_in ISO (PMID:14718166) UniProt PMID:14718166 NCBI chr35:25,001,861...25,004,444
Ensembl chr35:25,002,450...25,002,860
JBrowse link
G H3C11 H3 clustered histone 11 involved_in ISO (PMID:14718166) UniProt PMID:14718166
G H3C2 H3 clustered histone 2 involved_in ISO (PMID:14718166) UniProt PMID:14718166 NCBI chr35:23,989,431...23,989,871 JBrowse link
G H3C7 H3 clustered histone 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chr35:24,174,818...24,177,957
Ensembl chr35:24,177,521...24,177,931
JBrowse link
G H4-16 H4 histone 16 involved_in IEA Ensembl GO_REF:0000107 NCBI chr27:31,839,899...31,840,463
Ensembl chr27:31,840,011...31,840,322
JBrowse link
G H4C11 H4 clustered histone 11 involved_in ISO (PMID:14718166) UniProt PMID:14718166 NCBI chr35:25,009,935...25,012,013
Ensembl chr35:25,011,693...25,011,998
JBrowse link
G H4C13 H4 clustered histone 13 involved_in ISO (PMID:14718166) UniProt PMID:14718166 NCBI chr35:25,015,108...25,051,906 JBrowse link
G H4C14 H4 clustered histone 14 involved_in ISO (PMID:14718166) UniProt PMID:14718166 NCBI chr17:59,129,585...59,130,048
Ensembl chr17:59,129,682...59,129,993
JBrowse link
G H4C4 H4 clustered histone 4 involved_in ISO (PMID:14718166) UniProt PMID:14718166 NCBI chr35:24,121,320...24,124,986 JBrowse link
G H4C9 H4 clustered histone 9 involved_in IEA Ensembl GO_REF:0000107 NCBI chr35:24,555,412...24,556,402
Ensembl chr35:24,556,015...24,556,326
JBrowse link
G HAT1 histone acetyltransferase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr36:16,310,269...16,378,029
Ensembl chr36:16,310,710...16,378,017
JBrowse link
G IPO4 importin 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:4,171,525...4,180,666
Ensembl chr 8:4,171,527...4,181,151
JBrowse link
G NASP nuclear autoantigenic sperm protein involved_in
acts_upstream_of_or_within
IBA
ISO
(PMID:21873635)
(MGI:3694318|PMID:16728391)
GO_Central
UniProt
PMID:16728391 PMID:21873635 MGI:3694318 NCBI chr15:14,742,008...14,782,186
Ensembl chr15:14,742,012...14,808,592
JBrowse link
G RBBP4 RB binding protein 4, chromatin remodeling factor involved_in ISO (PMID:14718166) UniProt PMID:14718166 NCBI chr 2:68,638,459...68,660,942
Ensembl chr 2:68,638,498...68,660,910
JBrowse link
DNA replication-independent chromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ASF1A anti-silencing function 1A histone chaperone involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 1:58,821,324...58,834,935
Ensembl chr 1:58,821,521...58,946,475
JBrowse link
G ASF1B anti-silencing function 1B histone chaperone involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr20:48,398,615...48,406,889 JBrowse link
G ATRX ATRX chromatin remodeler involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:59,772,067...60,107,016
Ensembl chr  X:59,774,585...60,106,980
JBrowse link
G CABIN1 calcineurin binding protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr26:28,366,264...28,517,570
Ensembl chr26:28,366,265...28,517,656
JBrowse link
G H3-3A H3.3 histone A involved_in ISO (PMID:14718166) UniProt PMID:14718166 NCBI chr 7:38,797,168...38,805,417
Ensembl chr 7:38,797,448...38,805,416
JBrowse link
G H4-16 H4 histone 16 involved_in IEA Ensembl GO_REF:0000107 NCBI chr27:31,839,899...31,840,463
Ensembl chr27:31,840,011...31,840,322
JBrowse link
G H4C11 H4 clustered histone 11 involved_in ISO (PMID:14718166) UniProt PMID:14718166 NCBI chr35:25,009,935...25,012,013
Ensembl chr35:25,011,693...25,011,998
JBrowse link
G H4C13 H4 clustered histone 13 involved_in ISO (PMID:14718166) UniProt PMID:14718166 NCBI chr35:25,015,108...25,051,906 JBrowse link
G H4C14 H4 clustered histone 14 involved_in ISO (PMID:14718166) UniProt PMID:14718166 NCBI chr17:59,129,585...59,130,048
Ensembl chr17:59,129,682...59,129,993
JBrowse link
G H4C4 H4 clustered histone 4 involved_in ISO (PMID:14718166) UniProt PMID:14718166 NCBI chr35:24,121,320...24,124,986 JBrowse link
G H4C9 H4 clustered histone 9 involved_in IEA Ensembl GO_REF:0000107 NCBI chr35:24,555,412...24,556,402
Ensembl chr35:24,556,015...24,556,326
JBrowse link
G HAT1 histone acetyltransferase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr36:16,310,269...16,378,029
Ensembl chr36:16,310,710...16,378,017
JBrowse link
G HIRA histone cell cycle regulator involved_in ISO (PMID:14718166) UniProt PMID:14718166 NCBI chr26:29,777,984...29,867,992
Ensembl chr26:29,778,086...29,867,559
JBrowse link
G IPO4 importin 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:4,171,525...4,180,666
Ensembl chr 8:4,171,527...4,181,151
JBrowse link
G NASP nuclear autoantigenic sperm protein involved_in ISO (PMID:14718166) UniProt PMID:14718166 NCBI chr15:14,742,008...14,782,186
Ensembl chr15:14,742,012...14,808,592
JBrowse link
G RBBP4 RB binding protein 4, chromatin remodeling factor involved_in ISO (PMID:14718166) UniProt PMID:14718166 NCBI chr 2:68,638,459...68,660,942
Ensembl chr 2:68,638,498...68,660,910
JBrowse link
G UBN1 ubinuclein 1 involved_in ISO (PMID:14718166) UniProt PMID:14718166 NCBI chr 6:36,542,266...36,581,789
Ensembl chr 6:36,544,405...36,581,797
JBrowse link
DNA rewinding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ZRANB3 zinc finger RANBP2-type containing 3 involved_in ISO (PMID:21078962), (PMID:22705370) UniProt PMID:21078962 PMID:22705370 NCBI chr19:38,003,273...38,302,598
Ensembl chr19:37,957,421...38,301,888
JBrowse link
DNA topological change term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ERCC3 ERCC excision repair 3, TFIIH core complex helicase subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:23,310,911...23,344,083
Ensembl chr19:23,310,986...23,337,683
JBrowse link
G HMGB2 high mobility group box 2 involved_in ISS AgBase GO_REF:0000024 NCBI chr25:23,939,024...23,941,720
Ensembl chr25:23,939,027...23,941,606
JBrowse link
G TOP1 DNA topoisomerase I involved_in
acts_upstream_of_or_within
IBA
ISO
(PMID:21873635)
(MGI:3612364|PMID:16261531), (MGI:70738|PMID:7842491)
GO_Central
MGI
RGD
PMID:1332866 PMID:7842491 PMID:16261531 PMID:21873635 MGI:3612364 MGI:70738 RGD:1580856 NCBI chr24:29,075,267...29,166,733
Ensembl chr24:29,075,492...29,165,864
JBrowse link
G TOP2A DNA topoisomerase II alpha involved_in
acts_upstream_of_or_within
ISO (PMID:22323612)
(PMID:12711669)
(MGI:51613|PMID:1331984), (MGI:895157|PMID:9224616)
RGD
UniProt
MGI
PMID:1331984 PMID:9224616 PMID:11334111 PMID:12711669 PMID:22323612 MGI:51613 MGI:895157 RGD:1580614 NCBI chr 9:22,207,501...22,237,497
Ensembl chr 9:22,207,638...22,237,496
JBrowse link
G TOP2B DNA topoisomerase II beta involved_in ISO (PMID:10684600) UniProt PMID:10684600 NCBI chr23:18,159,521...18,206,413
Ensembl chr23:18,146,095...18,206,287
JBrowse link
G TOP3A DNA topoisomerase III alpha involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 5:41,262,820...41,290,101
Ensembl chr 5:41,263,017...41,290,100
JBrowse link
G TOP3B DNA topoisomerase III beta involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr26:31,198,371...31,223,133
Ensembl chr26:31,198,382...31,215,134
JBrowse link
DNA unwinding involved in DNA replication term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BLM BLM RecQ like helicase involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 3:53,408,120...53,506,728
Ensembl chr 3:53,408,217...53,473,146
JBrowse link
G MCM2 minichromosome maintenance complex component 2 acts_upstream_of_or_within ISO (MGI:2156014|PMID:10531422) MGI PMID:10531422 MGI:2156014 NCBI chr20:1,682,928...1,702,689
Ensembl chr20:1,682,886...1,702,366
JBrowse link
G MCM4 minichromosome maintenance complex component 4 involved_in
acts_upstream_of_or_within
IBA
ISO
(PMID:21873635)
(MGI:3582148|PMID:15917436)
GO_Central
MGI
PMID:15917436 PMID:21873635 MGI:3582148 NCBI chr29:244,634...261,154
Ensembl chr29:244,656...260,991
JBrowse link
G MCM6 minichromosome maintenance complex component 6 involved_in
acts_upstream_of_or_within
IBA
ISO
(PMID:21873635)
(MGI:3582148|PMID:15917436)
GO_Central
MGI
PMID:15917436 PMID:21873635 MGI:3582148 NCBI chr19:38,627,154...38,660,312
Ensembl chr19:38,627,183...38,660,280
JBrowse link
G MCM7 minichromosome maintenance complex component 7 acts_upstream_of_or_within ISO (MGI:3582148|PMID:15917436) MGI PMID:15917436 MGI:3582148 NCBI chr 6:9,492,654...9,499,846
Ensembl chr 6:9,492,573...9,499,855
JBrowse link
G PURA purine rich element binding protein A involved_in ISO (PMID:15777841) UniProt PMID:15777841 NCBI chr 2:35,325,630...35,345,366
Ensembl chr 2:35,330,902...35,332,835
JBrowse link
G RAD51 RAD51 recombinase involved_in ISS UniProt GO_REF:0000024 NCBI chr30:7,842,540...7,877,128
Ensembl chr30:7,842,540...7,877,606
JBrowse link
G RECQL RecQ like helicase involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr27:25,590,326...25,636,304
Ensembl chr27:25,590,831...25,636,685
JBrowse link
G RECQL5 RecQ like helicase 5 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 9:4,902,753...4,940,442
Ensembl chr 9:4,903,477...4,940,436
JBrowse link
G RPA1 replication protein A1 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 9:45,958,566...46,034,850
Ensembl chr 9:45,958,619...46,034,328
JBrowse link
G SSBP1 single stranded DNA binding protein 1 involved_in ISO (PMID:26446790) FlyBase PMID:26446790 NCBI chr16:7,445,351...7,461,513
Ensembl chr16:7,451,444...7,461,464
JBrowse link
G TWNK twinkle mtDNA helicase involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:2136707|PMID:11431692) Ensembl
MGI
PMID:11431692 GO_REF:0000107 MGI:2136707 NCBI chr28:13,672,772...13,680,732
Ensembl chr28:13,676,304...13,680,044
JBrowse link
G-quadruplex DNA unwinding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BLM BLM RecQ like helicase involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 3:53,408,120...53,506,728
Ensembl chr 3:53,408,217...53,473,146
JBrowse link
G DDX11 DEAD/H-box helicase 11 involved_in ISO (PMID:26503245) UniProt PMID:26503245 NCBI chr27:42,067,845...42,102,699
Ensembl chr27:42,067,898...42,105,870
JBrowse link
G DHX36 DEAH-box helicase 36 involved_in ISO (PMID:16150737), (PMID:18842585)
(MGI:6201778|PMID:25611385)
UniProt PMID:16150737 PMID:18842585 PMID:25611385 MGI:6201778 NCBI chr23:48,404,351...48,456,360
Ensembl chr23:48,407,316...48,456,654
JBrowse link
G DHX9 DExH-box helicase 9 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:16,233,763...16,292,576
Ensembl chr 7:16,233,814...16,292,618
JBrowse link
G HNRNPA2B1 heterogeneous nuclear ribonucleoprotein A2/B1 involved_in ISO PMID:23184978 BHF-UCL PMID:23184978 RGD:11567256 NCBI chr14:39,498,805...39,509,034
Ensembl chr14:39,500,897...39,508,952
JBrowse link
G WRN WRN RecQ like helicase involved_in ISO (PMID:11735402)
(MGI:5700122|PMID:26195664)
BHF-UCL PMID:11735402 PMID:26195664 MGI:5700122 NCBI chr16:33,164,662...33,304,466
Ensembl chr16:33,167,364...33,304,625
JBrowse link
histone H3-S10 phosphorylation involved in chromosome condensation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CCNB1 cyclin B1 acts_upstream_of_or_within ISO (MGI:5494393|PMID:22053081) MGI PMID:22053081 MGI:5494393 NCBI chr 2:54,256,957...54,264,749 JBrowse link
meiotic chromosome condensation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G MASTL microtubule associated serine/threonine kinase like involved_in ISO (PMID:23843240) AgBase PMID:23843240 NCBI chr 2:6,829,309...6,863,876
Ensembl chr 2:6,830,168...6,863,568
JBrowse link
G NCAPD2 non-SMC condensin I complex subunit D2 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr27:38,475,145...38,497,818
Ensembl chr27:38,475,155...38,496,312
JBrowse link
G NCAPD3 non-SMC condensin II complex subunit D3 involved_in IEA UniProt GO_REF:0000104 NCBI chr 5:1,021,588...1,081,846
Ensembl chr 5:1,020,690...1,081,446
JBrowse link
G NCAPH non-SMC condensin I complex subunit H acts_upstream_of_or_within
involved_in
ISO (MGI:5317363|PMID:21795393)
(MGI:5784807|PMID:25961503)
MGI PMID:21795393 PMID:25961503 MGI:5317363 MGI:5784807 NCBI chr17:34,428,886...34,463,140
Ensembl chr17:34,420,060...34,462,666
JBrowse link
G NCAPH2 non-SMC condensin II complex subunit H2 involved_in ISO (MGI:5784807|PMID:25961503) MGI PMID:25961503 MGI:5784807 NCBI chr10:16,790,137...16,801,851
Ensembl chr10:16,741,761...16,801,824
JBrowse link
G SMC2 structural maintenance of chromosomes 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5317363|PMID:21795393) Ensembl
MGI
PMID:21795393 GO_REF:0000107 MGI:5317363 NCBI chr11:60,091,728...60,155,295
Ensembl chr11:60,091,457...60,151,442
JBrowse link
G SMC4 structural maintenance of chromosomes 4 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5317363|PMID:21795393) Ensembl
MGI
PMID:21795393 GO_REF:0000107 MGI:5317363 NCBI chr34:26,455,630...26,495,392
Ensembl chr34:26,456,142...26,494,725
JBrowse link
mitotic chromosome condensation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AKAP8 A-kinase anchoring protein 8 acts_upstream_of_or_within ISO (MGI:3512088|PMID:12082153) MGI PMID:12082153 MGI:3512088 NCBI chr20:46,800,917...46,817,397
Ensembl chr20:46,800,872...46,817,397
JBrowse link
G AKAP8L A-kinase anchoring protein 8 like involved_in ISO (PMID:11034899) UniProt PMID:11034899 NCBI chr20:46,773,585...46,800,544
Ensembl chr20:46,747,062...46,817,240
JBrowse link
G CDCA5 cell division cycle associated 5 involved_in ISO (PMID:15837422) UniProt PMID:15837422 NCBI chr18:52,115,081...52,129,223
Ensembl chr18:52,115,203...52,120,817
JBrowse link
G CHMP1A charged multivesicular body protein 1A involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:63,897,544...63,906,515
Ensembl chr 5:63,897,594...63,905,550
JBrowse link
G NCAPD2 non-SMC condensin I complex subunit D2 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr27:38,475,145...38,497,818
Ensembl chr27:38,475,155...38,496,312
JBrowse link
G NCAPD3 non-SMC condensin II complex subunit D3 involved_in IEA UniProt GO_REF:0000104 NCBI chr 5:1,021,588...1,081,846
Ensembl chr 5:1,020,690...1,081,446
JBrowse link
G NCAPG non-SMC condensin I complex subunit G involved_in ISO (PMID:11136719) UniProt PMID:11136719 NCBI chr 3:91,279,800...91,322,679
Ensembl chr 3:91,281,077...91,322,803
JBrowse link
G NCAPH non-SMC condensin I complex subunit H involved_in ISO (PMID:11136719), (PMID:11694586)
(PMID:27737959)
UniProt PMID:11136719 PMID:11694586 PMID:27737959 NCBI chr17:34,428,886...34,463,140
Ensembl chr17:34,420,060...34,462,666
JBrowse link
G NCAPH2 non-SMC condensin II complex subunit H2 involved_in ISO (MGI:5905517|PMID:27737959) UniProt PMID:27737959 MGI:5905517 NCBI chr10:16,790,137...16,801,851
Ensembl chr10:16,741,761...16,801,824
JBrowse link
G NUSAP1 nucleolar and spindle associated protein 1 acts_upstream_of_or_within ISO (PMID:12963707) MGI PMID:12963707 NCBI chr30:8,358,737...8,435,039
Ensembl chr30:8,396,399...8,434,179
JBrowse link
G PHF13 PHD finger protein 13 involved_in ISO (PMID:19638409) UniProt PMID:19638409 NCBI chr 5:60,434,218...60,441,930
Ensembl chr 5:60,433,328...60,439,672
JBrowse link
G SMC2 structural maintenance of chromosomes 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:60,091,728...60,155,295
Ensembl chr11:60,091,457...60,151,442
JBrowse link
G SMC4 structural maintenance of chromosomes 4 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr34:26,455,630...26,495,392
Ensembl chr34:26,456,142...26,494,725
JBrowse link
G TTN titin involved_in ISO (PMID:9548712) BHF-UCL PMID:9548712 NCBI chr36:22,146,870...22,417,858
Ensembl chr36:22,147,824...22,417,826
JBrowse link
negative regulation of chromosome condensation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G H3-3A H3.3 histone A involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5502235|PMID:23903189) Ensembl
MGI
PMID:23903189 GO_REF:0000107 MGI:5502235 NCBI chr 7:38,797,168...38,805,417
Ensembl chr 7:38,797,448...38,805,416
JBrowse link
G H3-3B H3.3 histone B involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:4,805,655...4,808,076
Ensembl chr 9:4,805,650...4,833,503
JBrowse link
negative regulation of DNA duplex unwinding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G TOP2A DNA topoisomerase II alpha involved_in ISO (PMID:12711669) UniProt PMID:12711669 NCBI chr 9:22,207,501...22,237,497
Ensembl chr 9:22,207,638...22,237,496
JBrowse link
negative regulation of DNA helicase activity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G MNAT1 MNAT1 component of CDK activating kinase involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:35,747,883...35,946,353
Ensembl chr 8:35,756,933...35,946,353
JBrowse link
negative regulation of ribosomal DNA heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PHF2 PHD finger protein 2 involved_in ISO (PMID:20129925) UniProt PMID:20129925 NCBI chr 1:98,188,014...98,253,930
Ensembl chr 1:98,188,826...98,254,411
JBrowse link
G PHF8 PHD finger protein 8 involved_in ISO (PMID:20208542) UniProt PMID:20208542 NCBI chr  X:45,635,204...45,741,850
Ensembl chr  X:45,571,840...46,081,994
JBrowse link
nucleosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ANP32B acidic nuclear phosphoprotein 32 family member B involved_in ISO (PMID:20538007) UniProt PMID:20538007 NCBI chr11:55,230,017...55,272,744
Ensembl chr11:55,243,854...55,350,194
JBrowse link
G ASF1A anti-silencing function 1A histone chaperone acts_upstream_of_or_within ISO (PMID:11897662) MGI PMID:11897662 NCBI chr 1:58,821,324...58,834,935
Ensembl chr 1:58,821,521...58,946,475
JBrowse link
G ASF1B anti-silencing function 1B histone chaperone acts_upstream_of_or_within ISO (MGI:2675150|PMID:12842904) MGI PMID:12842904 MGI:2675150 NCBI chr20:48,398,615...48,406,889 JBrowse link
G ATRX ATRX chromatin remodeler involved_in ISO (PMID:20651253) UniProt PMID:20651253 NCBI chr  X:59,772,067...60,107,016
Ensembl chr  X:59,774,585...60,106,980
JBrowse link
G BRD2 bromodomain containing 2 involved_in ISS UniProt GO_REF:0000024 NCBI chr12:2,534,034...2,546,029
Ensembl chr12:2,534,034...2,546,029
JBrowse link
G DAXX death domain associated protein involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr12:2,755,960...2,760,687
Ensembl chr12:2,755,960...2,761,340
JBrowse link
G DNAJC9 DnaJ heat shock protein family (Hsp40) member C9 involved_in ISO (PMID:33857403) UniProt PMID:33857403 NCBI chr 4:23,820,714...23,825,624
Ensembl chr 4:23,821,304...23,825,484
JBrowse link
G GRWD1 glutamate rich WD repeat containing 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:107,814,402...107,821,107
Ensembl chr 1:107,815,063...107,820,858
JBrowse link
G H1-2 H1.2 linker histone, cluster member involved_in IEA InterPro GO_REF:0000002 NCBI chr35:24,009,304...24,011,602 JBrowse link
G H1-4 H1.4 linker histone, cluster member involved_in IEA InterPro GO_REF:0000002 NCBI chr35:24,091,950...24,092,694 JBrowse link
G H1-6 H1.6 linker histone, cluster member involved_in IEA InterPro GO_REF:0000002 NCBI chr35:24,046,374...24,065,892
Ensembl chr35:24,044,188...24,047,810
JBrowse link
G H2AB1 H2A.B variant histone 1 involved_in ISO (PMID:22795134) UniProt PMID:22795134 NCBI chr  X:122,910,412...122,913,373
Ensembl chr  X:122,910,968...122,913,382
JBrowse link
G H2BC1 H2B clustered histone 1 acts_upstream_of_or_within
involved_in
ISO (MGI:3702345|PMID:17261847)
(MGI:5502464|PMID:23884607)
MGI
UniProt
PMID:17261847 PMID:23884607 MGI:3702345 MGI:5502464 NCBI chr35:23,677,952...23,678,432 JBrowse link
G H2BC13 H2B clustered histone 13 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr35:24,999,666...25,000,124
Ensembl chr35:24,999,692...25,000,072
JBrowse link
G H2BC14 H2B clustered histone 14 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr35:25,006,472...25,035,326
Ensembl chr35:25,006,510...25,006,890
JBrowse link
G H2BC15 H2B clustered histone 15 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr35:25,031,173...25,035,326
Ensembl chr35:25,031,264...25,031,644
JBrowse link
G H2BC2 H2B clustered histone 2 involved_in ISO (PMID:24699735) UniProt PMID:24699735 NCBI chr35:23,690,580...23,691,133
Ensembl chr35:23,690,707...23,691,090
JBrowse link
G H2BC4 H2B clustered histone 4 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr35:24,062,068...24,066,934
Ensembl chr35:24,066,399...24,066,779
JBrowse link
G H2BC8 H2B clustered histone 8 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr35:24,130,229...24,131,736
Ensembl chr35:24,131,296...24,131,676
JBrowse link
G H2BC9 H2B clustered histone 9 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr35:24,178,907...24,179,379
Ensembl chr35:24,178,933...24,179,313
JBrowse link
G H3-3A H3.3 histone A involved_in ISO (PMID:21636898)
(PMID:25615412)
UniProt PMID:21636898 PMID:25615412 NCBI chr 7:38,797,168...38,805,417
Ensembl chr 7:38,797,448...38,805,416
JBrowse link
G H3-4 H3.4 histone involved_in ISO (PMID:20498094)
(PMID:25615412)
UniProt PMID:20498094 PMID:25615412 NCBI chr14:627,178...627,587
Ensembl chr14:627,190...627,581
JBrowse link
G H3C1 H3 clustered histone 1 involved_in ISO (PMID:25615412)
(PMID:20498094), (PMID:21636898), (PMID:24699735)
UniProt PMID:20498094 PMID:21636898 PMID:24699735 PMID:25615412 NCBI chr35:23,975,775...23,977,803
Ensembl chr35:23,977,201...23,977,611
JBrowse link
G H3C10 H3 clustered histone 10 involved_in ISO (PMID:20498094), (PMID:21636898), (PMID:24699735)
(PMID:25615412)
UniProt PMID:20498094 PMID:21636898 PMID:24699735 PMID:25615412 NCBI chr35:25,001,861...25,004,444
Ensembl chr35:25,002,450...25,002,860
JBrowse link
G H3C11 H3 clustered histone 11 involved_in ISO (PMID:20498094), (PMID:21636898), (PMID:24699735)
(PMID:25615412)
UniProt PMID:20498094 PMID:21636898 PMID:24699735 PMID:25615412
G H3C13 H3 clustered histone 13 involved_in ISO (PMID:21636898), (PMID:25615412) UniProt PMID:21636898 PMID:25615412 NCBI chr17:59,121,020...59,129,410
Ensembl chr17:59,121,976...59,122,386
JBrowse link
G H3C2 H3 clustered histone 2 involved_in ISO (PMID:20498094), (PMID:21636898), (PMID:24699735)
(PMID:25615412)
UniProt PMID:20498094 PMID:21636898 PMID:24699735 PMID:25615412 NCBI chr35:23,989,431...23,989,871 JBrowse link
G H3C7 H3 clustered histone 7 involved_in ISO (PMID:20498094), (PMID:21636898), (PMID:24699735)
(PMID:25615412)
UniProt PMID:20498094 PMID:21636898 PMID:24699735 PMID:25615412 NCBI chr35:24,174,818...24,177,957
Ensembl chr35:24,177,521...24,177,931
JBrowse link
G H4-16 H4 histone 16 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr27:31,839,899...31,840,463
Ensembl chr27:31,840,011...31,840,322
JBrowse link
G H4C11 H4 clustered histone 11 involved_in ISO (PMID:20498094), (PMID:21636898), (PMID:24699735), (PMID:25615412) UniProt PMID:20498094 PMID:21636898 PMID:24699735 PMID:25615412 NCBI chr35:25,009,935...25,012,013
Ensembl chr35:25,011,693...25,011,998
JBrowse link
G H4C13 H4 clustered histone 13 involved_in ISO (PMID:20498094), (PMID:21636898), (PMID:24699735), (PMID:25615412) UniProt PMID:20498094 PMID:21636898 PMID:24699735 PMID:25615412 NCBI chr35:25,015,108...25,051,906 JBrowse link
G H4C14 H4 clustered histone 14 involved_in ISO (PMID:20498094), (PMID:21636898), (PMID:24699735), (PMID:25615412) UniProt PMID:20498094 PMID:21636898 PMID:24699735 PMID:25615412 NCBI chr17:59,129,585...59,130,048
Ensembl chr17:59,129,682...59,129,993
JBrowse link
G H4C4 H4 clustered histone 4 involved_in ISO (PMID:20498094), (PMID:21636898), (PMID:24699735), (PMID:25615412) UniProt PMID:20498094 PMID:21636898 PMID:24699735 PMID:25615412 NCBI chr35:24,121,320...24,124,986 JBrowse link
G H4C9 H4 clustered histone 9 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr35:24,555,412...24,556,402
Ensembl chr35:24,556,015...24,556,326
JBrowse link
G HMGB1 high mobility group box 1 involved_in ISO (PMID:2465778) AgBase PMID:2465778 NCBI chr25:9,431,223...9,558,167
Ensembl chr25:9,431,218...9,558,165
JBrowse link
G HMGB2 high mobility group box 2 involved_in ISS AgBase GO_REF:0000024 NCBI chr25:23,939,024...23,941,720
Ensembl chr25:23,939,027...23,941,606
JBrowse link
G LOC403555 SET translocation involved_in IEA InterPro GO_REF:0000002 NCBI chr  X:91,851,844...91,869,284 JBrowse link
G MACROH2A1 macroH2A.1 histone involved_in IEA UniProt GO_REF:0000104 NCBI chr11:23,369,957...23,448,235
Ensembl chr11:23,370,300...23,438,219
JBrowse link
G MCM2 minichromosome maintenance complex component 2 acts_upstream_of_or_within ISO (MGI:2156014|PMID:10531422) MGI PMID:10531422 MGI:2156014 NCBI chr20:1,682,928...1,702,689
Ensembl chr20:1,682,886...1,702,366
JBrowse link
G NAA60 N-alpha-acetyltransferase 60, NatF catalytic subunit involved_in ISO (PMID:21981917) UniProt PMID:21981917 NCBI chr 6:37,759,233...37,784,224
Ensembl chr 6:37,761,497...37,793,290
JBrowse link
G NAP1L3 nucleosome assembly protein 1 like 3 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr  X:69,231,981...69,233,827
Ensembl chr  X:69,232,078...69,233,499
JBrowse link
G NAP1L4 nucleosome assembly protein 1 like 4 involved_in ISO (PMID:9325046)
(MGI:5897488|PMID:28366643)
UniProt PMID:9325046 PMID:28366643 MGI:5897488 NCBI chr18:46,910,366...46,946,710
Ensembl chr18:46,911,278...46,945,525
JBrowse link
G NAP1L5 nucleosome assembly protein 1 like 5 involved_in IEA InterPro GO_REF:0000002 NCBI chr32:11,956,795...11,958,754
Ensembl chr32:11,958,122...11,958,658
JBrowse link
G NASP nuclear autoantigenic sperm protein involved_in ISO (PMID:25615412) UniProt PMID:25615412 NCBI chr15:14,742,008...14,782,186
Ensembl chr15:14,742,012...14,808,592
JBrowse link
G NPM1 nucleophosmin 1 involved_in ISO (PMID:11602260) UniProt PMID:11602260 NCBI chr 4:40,756,464...40,770,174
Ensembl chr 4:40,756,465...40,770,175
JBrowse link
G PADI4 peptidyl arginine deiminase 4 involved_in ISO (MGI:5545819|PMID:24463520) UniProt PMID:24463520 MGI:5545819 NCBI chr 2:80,912,814...80,942,767
Ensembl chr 2:80,905,391...80,993,973
JBrowse link
G RSF1 remodeling and spacing factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr21:20,968,356...21,124,308
Ensembl chr21:20,968,193...21,119,642
JBrowse link
G SART3 spliceosome associated factor 3, U4/U6 recycling protein involved_in ISO (PMID:24526689) UniProt PMID:24526689 NCBI chr26:18,308,065...18,345,903
Ensembl chr26:18,308,733...18,345,353
JBrowse link
G SHPRH SNF2 histone linker PHD RING helicase involved_in IEA InterPro GO_REF:0000002 NCBI chr 1:37,076,318...37,170,664
Ensembl chr 1:37,077,949...37,163,041
JBrowse link
G SMARCA5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chr15:42,731,147...42,771,577
Ensembl chr15:42,731,426...42,770,624
JBrowse link
G SMYD3 SET and MYND domain containing 3 acts_upstream_of_or_within ISO (MGI:5500979|PMID:23752591) MGI PMID:23752591 MGI:5500979 NCBI chr 7:36,561,080...37,250,336
Ensembl chr 7:36,565,901...37,250,578
JBrowse link
G SOX9 SRY-box transcription factor 9 involved_in ISS UniProt GO_REF:0000024 NCBI chr 9:8,275,049...8,278,172
Ensembl chr 9:8,275,049...8,278,172
JBrowse link
G SPTY2D1 SPT2 chromatin protein domain containing 1 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr21:41,021,317...41,042,955
Ensembl chr21:41,023,629...41,042,492
JBrowse link
G TSPYL2 TSPY like 2 involved_in IEA InterPro GO_REF:0000002 NCBI chr  X:45,001,112...45,008,023
Ensembl chr  X:45,001,100...45,007,869
JBrowse link
nucleosome positioning term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CTCF CCCTC-binding factor involved_in ISO (PMID:18654629) UniProt PMID:18654629 NCBI chr 5:81,808,512...81,863,811
Ensembl chr 5:81,809,393...81,858,655
JBrowse link
G H1-2 H1.2 linker histone, cluster member involved_in
acts_upstream_of_or_within
IBA
ISO
(PMID:21873635)
(MGI:2664444|PMID:12808097)
GO_Central
MGI
PMID:12808097 PMID:21873635 MGI:2664444 NCBI chr35:24,009,304...24,011,602 JBrowse link
G H1-4 H1.4 linker histone, cluster member involved_in
acts_upstream_of_or_within
IBA
ISO
(PMID:21873635)
(MGI:2664444|PMID:12808097)
GO_Central
MGI
PMID:12808097 PMID:21873635 MGI:2664444 NCBI chr35:24,091,950...24,092,694 JBrowse link
G H1-6 H1.6 linker histone, cluster member involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr35:24,046,374...24,065,892
Ensembl chr35:24,044,188...24,047,810
JBrowse link
G H1-8 H1.8 linker histone involved_in ISO (MGI:5559660|PMID:22868987) UniProt PMID:22868987 MGI:5559660 NCBI chr20:5,614,822...5,619,136
Ensembl chr20:5,617,001...5,624,352
JBrowse link
G PAF1 PAF1 homolog, Paf1/RNA polymerase II complex component involved_in ISO (PMID:22046413) CACAO PMID:22046413 NCBI chr 1:113,828,219...113,832,747
Ensembl chr 1:113,828,007...113,832,735
JBrowse link
G RSF1 remodeling and spacing factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr21:20,968,356...21,124,308
Ensembl chr21:20,968,193...21,119,642
JBrowse link
G SMARCA5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr15:42,731,147...42,771,577
Ensembl chr15:42,731,426...42,770,624
JBrowse link
nucleotide-excision repair, DNA duplex unwinding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ERCC3 ERCC excision repair 3, TFIIH core complex helicase subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:23,310,911...23,344,083
Ensembl chr19:23,310,986...23,337,683
JBrowse link
pericentric heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CENPV centromere protein V involved_in ISO (PMID:18772885) UniProt PMID:18772885 NCBI chr 5:39,568,115...39,582,900
Ensembl chr 5:39,567,790...39,582,897
JBrowse link
G DICER1 dicer 1, ribonuclease III acts_upstream_of_or_within ISO (MGI:3528782|PMID:15713842) MGI PMID:15713842 MGI:3528782 NCBI chr 8:63,970,245...64,029,438
Ensembl chr 8:63,972,027...64,019,879
JBrowse link
G H3-3A H3.3 histone A involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5694896|PMID:26159997) Ensembl
MGI
PMID:26159997 GO_REF:0000107 MGI:5694896 NCBI chr 7:38,797,168...38,805,417
Ensembl chr 7:38,797,448...38,805,416
JBrowse link
G H3-3B H3.3 histone B involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:4,805,655...4,808,076
Ensembl chr 9:4,805,650...4,833,503
JBrowse link
G HELLS helicase, lymphoid specific involved_in ISO (MGI:3041983|PMID:14612388) UniProt PMID:14612388 MGI:3041983 NCBI chr28:8,660,866...8,705,570
Ensembl chr28:8,661,008...8,705,580
JBrowse link
positive regulation of DNA helicase activity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G POT1 protection of telomeres 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:10,987,385...11,067,473
Ensembl chr14:10,987,494...11,066,956
JBrowse link
G SSBP1 single stranded DNA binding protein 1 involved_in ISO (PMID:15167897) FlyBase PMID:15167897 NCBI chr16:7,445,351...7,461,513
Ensembl chr16:7,451,444...7,461,464
JBrowse link
rDNA heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BAZ2A bromodomain adjacent to zinc finger domain 2A involved_in
acts_upstream_of_or_within
ISO (MGI:3587127|PMID:16085498), (MGI:3852313|PMID:12198165), (MGI:3852588|PMID:19578370)
(MGI:3653583|PMID:16678107)
(MGI:4462332|PMID:20168299)
UniProt
MGI
PMID:12198165 PMID:16085498 PMID:16678107 PMID:19578370 PMID:20168299 MGI:3587127 MGI:3653583 MGI:3852313 MGI:3852588 MGI:4462332 NCBI chr10:834,018...868,817
Ensembl chr10:836,465...863,874
JBrowse link
G BEND3 BEN domain containing 3 involved_in ISO (PMID:26100909) UniProt PMID:26100909 NCBI chr12:64,302,403...64,324,396
Ensembl chr12:64,306,140...64,322,725
JBrowse link
G RRP8 ribosomal RNA processing 8 involved_in ISO (PMID:18485871) UniProt PMID:18485871 NCBI chr21:29,907,555...29,917,142
Ensembl chr21:29,907,361...29,918,408
JBrowse link
G SIRT1 sirtuin 1 involved_in ISO (PMID:18485871) UniProt PMID:18485871 NCBI chr 4:19,188,616...19,220,031
Ensembl chr 4:19,188,675...19,218,279
JBrowse link
G SMARCA5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 involved_in ISO (MGI:3587127|PMID:16085498) UniProt PMID:16085498 MGI:3587127 NCBI chr15:42,731,147...42,771,577
Ensembl chr15:42,731,426...42,770,624
JBrowse link
G SUV39H1 SUV39H1 histone lysine methyltransferase involved_in ISO (PMID:18485871) UniProt PMID:18485871 NCBI chr  X:41,894,623...41,907,854
Ensembl chr  X:41,893,045...41,906,403
JBrowse link
G UBTF upstream binding transcription factor acts_upstream_of_or_within ISO (MGI:3836497|PMID:19103806) MGI PMID:19103806 MGI:3836497 NCBI chr 9:19,177,778...19,189,805
Ensembl chr 9:19,179,174...19,189,181
JBrowse link
regulation of chromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SPTY2D1 SPT2 chromatin protein domain containing 1 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr21:41,021,317...41,042,955
Ensembl chr21:41,023,629...41,042,492
JBrowse link
regulation of chromosome condensation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CCNB1 cyclin B1 ISO positive regulation RGD PMID:15291744 RGD:1578405 NCBI chr 2:54,256,957...54,264,749 JBrowse link
G MCPH1 microcephalin 1 acts_upstream_of_or_within ISO (MGI:4437500|PMID:20169082) MGI PMID:20169082 MGI:4437500 NCBI chr16:58,306,761...58,529,090
Ensembl chr16:58,295,280...58,529,433
JBrowse link
G WAPL WAPL cohesin release factor acts_upstream_of_or_within ISO (MGI:5544860|PMID:23975099) MGI PMID:23975099 MGI:5544860 NCBI chr 4:34,219,644...34,297,456
Ensembl chr 4:34,219,645...34,302,839
JBrowse link
regulation of DNA helicase activity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G POT1 protection of telomeres 1 involved_in ISO (PMID:19734539) BHF-UCL PMID:19734539 NCBI chr14:10,987,385...11,067,473
Ensembl chr14:10,987,494...11,066,956
JBrowse link
regulation of ribosomal DNA heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G MACROH2A1 macroH2A.1 histone NOT|involved_in ISO (PMID:24071584) UniProt PMID:24071584 NCBI chr11:23,369,957...23,448,235
Ensembl chr11:23,370,300...23,438,219
JBrowse link
sperm chromatin condensation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FSHR follicle stimulating hormone receptor acts_upstream_of_or_within ISO (MGI:1855818|PMID:10775161) MGI PMID:10775161 MGI:1855818 NCBI chr10:50,765,591...50,938,643
Ensembl chr10:50,770,995...50,938,474
JBrowse link
G H1-7 H1.7 linker histone involved_in ISO (MGI:3531623|PMID:15710904) UniProt PMID:15710904 MGI:3531623 NCBI chr27:6,389,797...6,396,021
Ensembl chr27:6,389,908...6,391,174
JBrowse link
G LOC102152531 synaptonemal complex protein 3-like acts_upstream_of_or_within ISO (MGI:5315075|PMID:22164254) MGI PMID:22164254 MGI:5315075 NCBI chr  X:121,060,275...121,074,166 JBrowse link
G SELENOF selenoprotein F ISO RGD PMID:11344099 RGD:728803 NCBI chr 6:61,299,310...61,341,035
Ensembl chr 6:61,299,310...61,341,035
JBrowse link
G SYCP1 synaptonemal complex protein 1 acts_upstream_of_or_within ISO (MGI:5315075|PMID:22164254) MGI PMID:22164254 MGI:5315075 NCBI chr17:52,538,909...52,681,495
Ensembl chr17:52,539,615...52,648,133
JBrowse link
G TSSK6 testis specific serine kinase 6 involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:43,730,769...43,732,179
Ensembl chr20:43,730,907...43,731,728
JBrowse link
spermatogenesis, exchange of chromosomal proteins term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CHD5 chromodomain helicase DNA binding protein 5 involved_in ISO (MGI:5559810|PMID:24252660) UniProt PMID:24252660 MGI:5559810 NCBI chr 5:60,022,451...60,080,663
Ensembl chr 5:60,025,602...60,081,148
JBrowse link
G FSHR follicle stimulating hormone receptor acts_upstream_of_or_within ISO (MGI:2682484|PMID:14680821) MGI PMID:14680821 MGI:2682484 NCBI chr10:50,765,591...50,938,643
Ensembl chr10:50,770,995...50,938,474
JBrowse link
G H2BC1 H2B clustered histone 1 involved_in ISO (MGI:5502464|PMID:23884607) UniProt PMID:23884607 MGI:5502464 NCBI chr35:23,677,952...23,678,432 JBrowse link
G LOC102152531 synaptonemal complex protein 3-like involved_in ISO (PMID:14643120) UniProt PMID:14643120 NCBI chr  X:121,060,275...121,074,166 JBrowse link
G PIWIL1 piwi like RNA-mediated gene silencing 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr26:1,760,544...1,791,204
Ensembl chr26:1,761,149...1,791,185
JBrowse link
G PSME4 proteasome activator subunit 4 involved_in ISO (MGI:5494329|PMID:23706739) UniProt PMID:23706739 MGI:5494329 NCBI chr10:54,873,093...54,960,030
Ensembl chr10:54,875,177...54,960,035
JBrowse link
G RNF8 ring finger protein 8 involved_in ISO (MGI:5905675|PMID:28552346) UniProt PMID:28552346 MGI:5905675 NCBI chr12:6,380,365...6,415,407
Ensembl chr12:6,292,459...6,415,382
JBrowse link
G TNP1 transition protein 1 involved_in ISO (MGI:3041389|PMID:15083521), (MGI:3056208|PMID:15189834), (MGI:3620321|PMID:15163613), (MGI:5897488|PMID:28366643) UniProt PMID:15083521 PMID:15163613 PMID:15189834 PMID:28366643 MGI:3041389 MGI:3056208 MGI:3620321 MGI:5897488 NCBI chr37:23,742,875...23,743,417
Ensembl chr37:23,727,538...23,743,365
JBrowse link
G TNP2 transition protein 2 involved_in ISS UniProt GO_REF:0000024 NCBI chr 6:31,498,361...31,498,740
Ensembl chr 6:31,426,715...31,499,842
JBrowse link

Term paths to the root
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Term Annotations click to browse term
  biological_process 13875
    cellular process 13120
      cellular component organization or biogenesis 5398
        cellular component organization 5263
          organelle organization 3165
            chromosome organization 713
              DNA conformation change 177
                DNA geometric change + 53
                DNA packaging + 123
                DNA topological change 7
paths to the root