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ONTOLOGY REPORT - ANNOTATIONS


Term:DNA conformation change
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Accession:GO:0071103 term browser browse the term
Definition:A cellular process that results in a change in the spatial configuration of a DNA molecule. A conformation change can bend DNA, or alter the, twist, writhe, or linking number of a DNA molecule.
Synonyms:exact_synonym: DNA conformation modification


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DNA conformation change term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abl1 ABL proto-oncogene 1, non-receptor tyrosine kinase involved_in ISO (PMID:9558345) ARUK-UCL PMID:9558345 NCBI chrNW_004955513:652,048...799,182
Ensembl chrNW_004955513:653,252...799,239
JBrowse link
G Hhex hematopoietically expressed homeobox involved_in ISO (PMID:18755198) BHF-UCL PMID:18755198 NCBI chrNW_004955425:737,506...742,775
Ensembl chrNW_004955425:735,378...742,775
JBrowse link
apoptotic chromosome condensation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acin1 apoptotic chromatin condensation inducer 1 involved_in ISO (PMID:10490026) UniProt PMID:10490026 NCBI chrNW_004955409:37,206,675...37,246,851
Ensembl chrNW_004955409:37,206,675...37,246,922
JBrowse link
G Dffb DNA fragmentation factor subunit beta involved_in ISO (PMID:10959840) UniProt PMID:10959840 NCBI chrNW_004955486:7,836,013...7,849,875
Ensembl chrNW_004955486:7,838,273...7,850,180
JBrowse link
G Ern2 endoplasmic reticulum to nucleus signaling 2 involved_in ISO (PMID:11175748) UniProt PMID:11175748 NCBI chrNW_004955493:2,217,187...2,233,920
Ensembl chrNW_004955493:2,217,384...2,233,920
JBrowse link
G Gper1 G protein-coupled estrogen receptor 1 involved_in ISO PMID:23907461 UniProt PMID:23907461 RGD:8553942 NCBI chrNW_004955460:8,790,798...8,794,902
Ensembl chrNW_004955460:8,790,798...8,794,902
JBrowse link
G Top2a DNA topoisomerase II alpha involved_in ISO (PMID:10959840) UniProt PMID:10959840 NCBI chrNW_004955451:14,928,273...14,964,855
Ensembl chrNW_004955451:14,929,136...14,964,723
JBrowse link
CENP-A containing chromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hjurp Holliday junction recognition protein involved_in ISO (PMID:19410544), (PMID:19410545) UniProt PMID:19410544 PMID:19410545 NCBI chrNW_004955453:2,323,018...2,335,090
Ensembl chrNW_004955453:2,322,446...2,334,588
JBrowse link
G Mis18a MIS18 kinetochore protein A acts_upstream_of_or_within ISO (MGI:5438906|PMID:22516971) MGI PMID:22516971 MGI:5438906 NCBI chrNW_004955407:31,799,537...31,813,897
Ensembl chrNW_004955407:31,798,924...31,813,862
JBrowse link
chromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdan1 codanin 1 involved_in ISO (PMID:22407294) UniProt PMID:22407294 NCBI chrNW_004955416:9,393,170...9,403,374
Ensembl chrNW_004955416:9,393,197...9,403,370
JBrowse link
G Chaf1a chromatin assembly factor 1 subunit A involved_in ISO (PMID:8858152) UniProt PMID:8858152 NCBI chrNW_004955495:4,467,317...4,499,419
Ensembl chrNW_004955495:4,468,202...4,499,171
JBrowse link
G Chaf1b chromatin assembly factor 1 subunit B involved_in ISO (PMID:8858152) UniProt PMID:8858152 NCBI chrNW_004955407:35,601,992...35,618,287
Ensembl chrNW_004955407:35,602,819...35,617,917
JBrowse link
G Hmgb1 high mobility group box 1 involved_in ISO (MGI:3807115|PMID:18650382) UniProt PMID:18650382 MGI:3807115 NCBI chrNW_004955431:15,373,207...15,377,339
Ensembl chrNW_004955431:15,373,207...15,377,339
JBrowse link
G Noc2l NOC2 like nucleolar associated transcriptional repressor involved_in ISO (PMID:16322561) UniProt PMID:16322561 NCBI chrNW_004955486:9,750,969...9,763,622
Ensembl chrNW_004955486:9,751,053...9,767,104
JBrowse link
G Rbbp4 RB binding protein 4, chromatin remodeling factor involved_in ISO (PMID:8858152) UniProt PMID:8858152 NCBI chrNW_004955452:10,955,399...10,975,036
Ensembl chrNW_004955452:10,955,399...10,975,036
JBrowse link
G Tp53 tumor protein p53 involved_in ISO (PMID:16322561) UniProt PMID:16322561 NCBI chrNW_004955467:9,241,391...9,256,716
Ensembl chrNW_004955467:9,252,130...9,255,928
JBrowse link
chromosome condensation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdk1 cyclin dependent kinase 1 ISO RGD PMID:15695611 RGD:2301352 NCBI chrNW_004955425:14,210,681...14,226,474
Ensembl chrNW_004955425:14,210,680...14,226,474
JBrowse link
G Smc5 structural maintenance of chromosomes 5 acts_upstream_of_or_within ISO (MGI:5882483|PMID:26919979) MGI PMID:26919979 MGI:5882483 NCBI chrNW_004955434:2,742,276...2,848,384
Ensembl chrNW_004955434:2,742,373...2,848,337
JBrowse link
G Top2a DNA topoisomerase II alpha acts_upstream_of_or_within ISO (MGI:2158879|PMID:11835580) MGI PMID:11835580 MGI:2158879 NCBI chrNW_004955451:14,928,273...14,964,855
Ensembl chrNW_004955451:14,929,136...14,964,723
JBrowse link
DNA duplex unwinding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Anxa1 annexin A1 ISO RGD PMID:20655937 RGD:7421590 NCBI chrNW_004955512:5,686,508...5,703,645 JBrowse link
G Ascc3 activating signal cointegrator 1 complex subunit 3 involved_in ISO (PMID:22055184) UniProt PMID:22055184 NCBI chrNW_004955411:26,305,103...26,599,375
Ensembl chrNW_004955411:26,302,597...26,598,824
JBrowse link
G Blm BLM RecQ like helicase involved_in ISO (PMID:11735402), (PMID:24816114), (PMID:25901030) BHF-UCL PMID:11735402 PMID:24816114 PMID:25901030 NCBI chrNW_004955416:14,814,753...14,899,865
Ensembl chrNW_004955416:14,842,033...14,899,687
JBrowse link
G Ddx1 DEAD-box helicase 1 involved_in ISO (PMID:18710941) UniProt PMID:18710941 NCBI chrNW_004955487:9,085,950...9,117,599
Ensembl chrNW_004955487:9,085,918...9,119,979
JBrowse link
G Ddx11 DEAD/H-box helicase 11 involved_in ISO (PMID:10648783), (PMID:18499658), (PMID:26503245) UniProt PMID:10648783 PMID:18499658 PMID:26503245 NCBI chrNW_004955524:1,932,988...1,957,231
Ensembl chrNW_004955524:1,932,729...1,957,231
JBrowse link
G Dhx9 DExH-box helicase 9 involved_in ISO (PMID:12711669)
(PMID:21561811), (PMID:9111062)
UniProt PMID:9111062 PMID:12711669 PMID:21561811 NCBI chrNW_004955406:21,697,813...21,743,551
Ensembl chrNW_004955406:21,697,813...21,745,011
JBrowse link
G Mcm9 minichromosome maintenance 9 homologous recombination repair factor involved_in ISO (PMID:26300262) UniProt PMID:26300262 NCBI chrNW_004955436:1,642,337...1,661,362 JBrowse link
G Nbn nibrin involved_in ISO (PMID:15790808) BHF-UCL PMID:15790808 NCBI chrNW_004955417:6,840,916...6,880,479
Ensembl chrNW_004955417:6,839,312...6,880,133
JBrowse link
G Pot1 protection of telomeres 1 involved_in ISO (PMID:16030011) BHF-UCL PMID:16030011 NCBI chrNW_004955479:6,140,599...6,230,512
Ensembl chrNW_004955479:6,140,501...6,209,031
JBrowse link
G Rad50 RAD50 double strand break repair protein involved_in ISO (PMID:15790808) BHF-UCL PMID:15790808 NCBI chrNW_004955408:3,953,801...4,035,494 JBrowse link
G Recql4 RecQ like helicase 4 involved_in ISO (PMID:19177149) UniProt PMID:19177149 NCBI chrNW_004955454:3,136,097...3,142,525
Ensembl chrNW_004955454:3,136,216...3,142,422
JBrowse link
G Rtel1 regulator of telomere elongation helicase 1 involved_in ISO (MGI:5522574|PMID:24115439) BHF-UCL PMID:24115439 MGI:5522574 NCBI chrNW_004955528:531,680...578,003 JBrowse link
G Supv3l1 Suv3 like RNA helicase involved_in ISO (PMID:12466530) UniProt PMID:12466530 NCBI chrNW_004955437:21,880,778...21,905,540
Ensembl chrNW_004955437:21,877,666...21,906,362
JBrowse link
G Trex1 three prime repair exonuclease 1 acts_upstream_of_or_within ISO (MGI:5637600|PMID:25848017) MGI PMID:25848017 MGI:5637600 NCBI chrNW_004955532:533,877...535,767
Ensembl chrNW_004955532:533,877...535,767
JBrowse link
G Wrn WRN RecQ like helicase involved_in ISO (PMID:11735402), (PMID:26420422) BHF-UCL PMID:11735402 PMID:26420422 NCBI chrNW_004955463:7,495,243...7,633,532
Ensembl chrNW_004955463:7,525,100...7,633,596
JBrowse link
DNA geometric change term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hmgb1 high mobility group box 1 acts_upstream_of_or_within ISO PMID:10962007 MGI PMID:10962007 RGD:8554262 NCBI chrNW_004955431:15,373,207...15,377,339
Ensembl chrNW_004955431:15,373,207...15,377,339
JBrowse link
G Mterf1 mitochondrial transcription termination factor 1 involved_in ISO (PMID:20550934) UniProt PMID:20550934 NCBI chrNW_004955432:8,906,553...8,914,355 JBrowse link
DNA packaging term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LOC102030314 histone H2B type 1-A acts_upstream_of_or_within ISO (MGI:3702345|PMID:17261847) MGI PMID:17261847 MGI:3702345 NCBI chrNW_004955483:1,354,587...1,358,368 JBrowse link
DNA replication-dependent chromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Asf1a anti-silencing function 1A histone chaperone involved_in ISO (PMID:14718166) UniProt PMID:14718166 NCBI chrNW_004955436:1,635,397...1,640,989
Ensembl chrNW_004955436:1,635,399...1,645,075
JBrowse link
G Asf1b anti-silencing function 1B histone chaperone involved_in ISO (PMID:14718166) UniProt PMID:14718166 NCBI chrNW_004955415:32,818,592...32,828,651
Ensembl chrNW_004955415:32,817,547...32,828,651
JBrowse link
G Chaf1a chromatin assembly factor 1 subunit A involved_in ISO (PMID:14718166) UniProt PMID:14718166 NCBI chrNW_004955495:4,467,317...4,499,419
Ensembl chrNW_004955495:4,468,202...4,499,171
JBrowse link
G Chaf1b chromatin assembly factor 1 subunit B involved_in ISO (PMID:14718166) UniProt PMID:14718166 NCBI chrNW_004955407:35,601,992...35,618,287
Ensembl chrNW_004955407:35,602,819...35,617,917
JBrowse link
G Hat1 histone acetyltransferase 1 involved_in ISO (PMID:14718166) UniProt PMID:14718166 NCBI chrNW_004955449:3,026,194...3,070,448
Ensembl chrNW_004955449:3,025,461...3,066,919
JBrowse link
G Ipo4 importin 4 involved_in ISO (PMID:14718166) UniProt PMID:14718166 NCBI chrNW_004955409:36,214,704...36,223,714
Ensembl chrNW_004955409:36,214,704...36,223,714
JBrowse link
G LOC102006228 histone H3 involved_in ISO (PMID:14718166) UniProt PMID:14718166 NCBI chrNW_004955465:13,338,289...13,339,268 JBrowse link
G LOC102027630 histone H4 involved_in ISO (PMID:14718166) UniProt PMID:14718166 NCBI chrNW_004955413:11,517,229...11,517,609
Ensembl chrNW_004955413:11,517,245...11,517,556
JBrowse link
G Nasp nuclear autoantigenic sperm protein involved_in
acts_upstream_of_or_within
ISO (PMID:14718166)
(MGI:3694318|PMID:16728391)
UniProt PMID:14718166 PMID:16728391 MGI:3694318 NCBI chrNW_004955464:12,667,050...12,697,021
Ensembl chrNW_004955464:12,667,050...12,697,769
JBrowse link
G Rbbp4 RB binding protein 4, chromatin remodeling factor involved_in ISO (PMID:14718166) UniProt PMID:14718166 NCBI chrNW_004955452:10,955,399...10,975,036
Ensembl chrNW_004955452:10,955,399...10,975,036
JBrowse link
DNA replication-independent chromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Asf1a anti-silencing function 1A histone chaperone involved_in ISO (PMID:14718166) UniProt PMID:14718166 NCBI chrNW_004955436:1,635,397...1,640,989
Ensembl chrNW_004955436:1,635,399...1,645,075
JBrowse link
G Asf1b anti-silencing function 1B histone chaperone involved_in ISO (PMID:14718166) UniProt PMID:14718166 NCBI chrNW_004955415:32,818,592...32,828,651
Ensembl chrNW_004955415:32,817,547...32,828,651
JBrowse link
G Atrx ATRX chromatin remodeler involved_in ISO (PMID:22391447) UniProt PMID:22391447 NCBI chrNW_004955557:947,368...1,252,701
Ensembl chrNW_004955557:947,167...1,252,724
JBrowse link
G Cabin1 calcineurin binding protein 1 involved_in ISO (PMID:14718166) UniProt PMID:14718166 NCBI chrNW_004955455:8,162,365...8,312,932
Ensembl chrNW_004955455:8,162,315...8,312,909
JBrowse link
G H3f3a H3 histone, family 3A involved_in ISO (PMID:14718166) UniProt PMID:14718166 NCBI chrNW_004955489:269,900...278,398
Ensembl chrNW_004955489:269,900...278,398
JBrowse link
G H3f3b H3 histone, family 3B involved_in ISO (PMID:14718166) UniProt PMID:14718166 NCBI chrNW_004955506:6,475,336...6,478,781
Ensembl chrNW_004955506:6,474,727...6,482,244
JBrowse link
G Hat1 histone acetyltransferase 1 involved_in ISO (PMID:14718166) UniProt PMID:14718166 NCBI chrNW_004955449:3,026,194...3,070,448
Ensembl chrNW_004955449:3,025,461...3,066,919
JBrowse link
G Ipo4 importin 4 involved_in ISO (PMID:14718166) UniProt PMID:14718166 NCBI chrNW_004955409:36,214,704...36,223,714
Ensembl chrNW_004955409:36,214,704...36,223,714
JBrowse link
G LOC102009660 protein HIRA involved_in ISO (PMID:14718166) UniProt PMID:14718166 NCBI chrNW_004955442:18,581,370...18,673,590
Ensembl chrNW_004955442:18,581,370...18,673,761
JBrowse link
G LOC102027630 histone H4 involved_in ISO (PMID:14718166) UniProt PMID:14718166 NCBI chrNW_004955413:11,517,229...11,517,609
Ensembl chrNW_004955413:11,517,245...11,517,556
JBrowse link
G Nasp nuclear autoantigenic sperm protein involved_in ISO (PMID:14718166) UniProt PMID:14718166 NCBI chrNW_004955464:12,667,050...12,697,021
Ensembl chrNW_004955464:12,667,050...12,697,769
JBrowse link
G Rbbp4 RB binding protein 4, chromatin remodeling factor involved_in ISO (PMID:14718166) UniProt PMID:14718166 NCBI chrNW_004955452:10,955,399...10,975,036
Ensembl chrNW_004955452:10,955,399...10,975,036
JBrowse link
G Ubn1 ubinuclein 1 involved_in ISO (PMID:14718166) UniProt PMID:14718166 NCBI chrNW_004955442:12,627,530...12,654,159
Ensembl chrNW_004955442:12,627,530...12,654,159
JBrowse link
DNA rewinding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Zranb3 zinc finger RANBP2-type containing 3 involved_in ISO (PMID:21078962), (PMID:22705370) UniProt PMID:21078962 PMID:22705370 NCBI chrNW_004955440:2,683,041...2,907,859
Ensembl chrNW_004955440:2,680,787...2,888,345
JBrowse link
DNA topological change term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ercc3 ERCC excision repair 3, TFIIH core complex helicase subunit involved_in ISO (PMID:8663148) UniProt PMID:8663148 NCBI chrNW_004955459:3,210,936...3,238,401
Ensembl chrNW_004955459:3,210,479...3,242,576
JBrowse link
G Hmgb2 high mobility group box 2 involved_in ISO (PMID:11275566) AgBase PMID:11275566 NCBI chrNW_004955403:33,656,314...33,659,115
Ensembl chrNW_004955403:33,656,300...33,659,428
JBrowse link
G Top1 DNA topoisomerase I acts_upstream_of_or_within
involved_in
ISO (MGI:3612364|PMID:16261531), (MGI:70738|PMID:7842491)
(PMID:14594810)
(PMID:14654701), (PMID:8567649), (PMID:8631793), (PMID:8631794), (PMID:9611241)
RGD
MGI
UniProt
CAFA
PMID:1332866 PMID:7842491 PMID:8567649 PMID:8631793 PMID:8631794 More... MGI:3612364 MGI:70738 RGD:1580856 NCBI chrNW_004955445:15,834,017...15,922,785
Ensembl chrNW_004955445:15,834,017...15,922,785
JBrowse link
G Top2a DNA topoisomerase II alpha acts_upstream_of_or_within
involved_in
ISO (MGI:51613|PMID:1331984), (MGI:895157|PMID:9224616)
(PMID:22323612)
(PMID:12711669)
RGD
MGI
UniProt
PMID:1331984 PMID:9224616 PMID:11334111 PMID:12711669 PMID:22323612 MGI:51613 MGI:895157 RGD:1580614 NCBI chrNW_004955451:14,928,273...14,964,855
Ensembl chrNW_004955451:14,929,136...14,964,723
JBrowse link
G Top2b DNA topoisomerase II beta involved_in ISO (PMID:10684600) UniProt PMID:10684600 NCBI chrNW_004955430:17,457,603...17,523,115
Ensembl chrNW_004955430:17,457,603...17,507,012
JBrowse link
G Top3a DNA topoisomerase III alpha involved_in ISO (PMID:20445207) UniProt PMID:20445207 NCBI chrNW_004955478:11,015,378...11,045,717
Ensembl chrNW_004955478:11,015,378...11,045,717
JBrowse link
DNA unwinding involved in DNA replication term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mcm2 minichromosome maintenance complex component 2 acts_upstream_of_or_within ISO (MGI:2156014|PMID:10531422) MGI PMID:10531422 MGI:2156014 NCBI chrNW_004955429:16,012,345...16,027,151
Ensembl chrNW_004955429:16,012,173...16,027,277
JBrowse link
G Mcm4 minichromosome maintenance complex component 4 acts_upstream_of_or_within ISO (MGI:3582148|PMID:15917436) MGI PMID:15917436 MGI:3582148 NCBI chrNW_004955454:7,891,646...7,908,240
Ensembl chrNW_004955454:7,891,456...7,908,462
JBrowse link
G Mcm6 minichromosome maintenance complex component 6 acts_upstream_of_or_within ISO (MGI:3582148|PMID:15917436) MGI PMID:15917436 MGI:3582148 NCBI chrNW_004955440:3,200,803...3,234,437
Ensembl chrNW_004955440:3,200,803...3,234,437
JBrowse link
G Mcm7 minichromosome maintenance complex component 7 acts_upstream_of_or_within ISO (MGI:3582148|PMID:15917436) MGI PMID:15917436 MGI:3582148 NCBI chrNW_004955573:763,358...770,782
Ensembl chrNW_004955573:763,358...775,489
JBrowse link
G Pura purine rich element binding protein A involved_in ISO (PMID:15777841) UniProt PMID:15777841 NCBI chrNW_004955418:538,883...548,605 JBrowse link
G Rad51 RAD51 recombinase involved_in ISO (PMID:7988572) UniProt PMID:7988572 NCBI chrNW_004955416:7,566,715...7,590,628
Ensembl chrNW_004955416:7,566,686...7,590,628
JBrowse link
G Ssbp1 single stranded DNA binding protein 1 involved_in ISO (PMID:26446790) FlyBase PMID:26446790 NCBI chrNW_004955494:1,807,885...1,826,375
Ensembl chrNW_004955494:1,814,106...1,826,375
JBrowse link
G Twnk twinkle mtDNA helicase involved_in
acts_upstream_of_or_within
ISO (PMID:15167897)
(MGI:2136707|PMID:11431692)
FlyBase
MGI
PMID:11431692 PMID:15167897 MGI:2136707 NCBI chrNW_004955485:9,193,838...9,198,697
Ensembl chrNW_004955485:9,191,919...9,198,697
JBrowse link
G-quadruplex DNA unwinding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Blm BLM RecQ like helicase involved_in ISO (PMID:11735402)
(MGI:5700122|PMID:26195664)
BHF-UCL PMID:11735402 PMID:26195664 MGI:5700122 NCBI chrNW_004955416:14,814,753...14,899,865
Ensembl chrNW_004955416:14,842,033...14,899,687
JBrowse link
G Ddx11 DEAD/H-box helicase 11 involved_in ISO (PMID:26503245) UniProt PMID:26503245 NCBI chrNW_004955524:1,932,988...1,957,231
Ensembl chrNW_004955524:1,932,729...1,957,231
JBrowse link
G Dhx36 DEAH-box helicase 36 involved_in ISO (PMID:16150737), (PMID:18842585)
(MGI:6201778|PMID:25611385)
UniProt PMID:16150737 PMID:18842585 PMID:25611385 MGI:6201778 NCBI chrNW_004955448:5,634,072...5,676,272
Ensembl chrNW_004955448:5,634,072...5,676,319
JBrowse link
G Dhx9 DExH-box helicase 9 involved_in ISO (PMID:21561811) UniProt PMID:21561811 NCBI chrNW_004955406:21,697,813...21,743,551
Ensembl chrNW_004955406:21,697,813...21,745,011
JBrowse link
G Hnrnpa2b1 heterogeneous nuclear ribonucleoprotein A2/B1 involved_in ISO PMID:23184978 BHF-UCL PMID:23184978 RGD:11567256 NCBI chrNW_004955410:28,032,193...28,042,459
Ensembl chrNW_004955410:28,032,193...28,042,459
JBrowse link
G Wrn WRN RecQ like helicase involved_in ISO (PMID:11735402)
(MGI:5700122|PMID:26195664)
BHF-UCL PMID:11735402 PMID:26195664 MGI:5700122 NCBI chrNW_004955463:7,495,243...7,633,532
Ensembl chrNW_004955463:7,525,100...7,633,596
JBrowse link
histone H3-S10 phosphorylation involved in chromosome condensation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ccnb1 cyclin B1 acts_upstream_of_or_within ISO (MGI:5494393|PMID:22053081) MGI PMID:22053081 MGI:5494393 NCBI chrNW_004955446:140,661...149,500
Ensembl chrNW_004955446:140,093...149,500
JBrowse link
meiotic chromosome condensation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mastl microtubule associated serine/threonine kinase like involved_in ISO (PMID:23843240) AgBase PMID:23843240 NCBI chrNW_004955429:2,591,173...2,617,084
Ensembl chrNW_004955429:2,591,203...2,617,784
JBrowse link
G Ncaph non-SMC condensin I complex subunit H acts_upstream_of_or_within
involved_in
ISO (MGI:5317363|PMID:21795393)
(MGI:5784807|PMID:25961503)
MGI PMID:21795393 PMID:25961503 MGI:5317363 MGI:5784807 NCBI chrNW_004955470:3,878,896...3,909,087
Ensembl chrNW_004955470:3,878,883...3,909,146
JBrowse link
G Ncaph2 non-SMC condensin II complex subunit H2 involved_in ISO (MGI:5784807|PMID:25961503) MGI PMID:25961503 MGI:5784807 NCBI chrNW_004955413:33,492,348...33,503,804 JBrowse link
G Smc2 structural maintenance of chromosomes 2 acts_upstream_of_or_within ISO (MGI:5317363|PMID:21795393) MGI PMID:21795393 MGI:5317363 NCBI chrNW_004955419:22,245,843...22,294,508
Ensembl chrNW_004955419:22,245,843...22,294,508
JBrowse link
G Smc4 structural maintenance of chromosomes 4 acts_upstream_of_or_within ISO (MGI:5317363|PMID:21795393) MGI PMID:21795393 MGI:5317363 NCBI chrNW_004955448:10,926,653...10,960,624
Ensembl chrNW_004955448:10,927,877...10,960,624
JBrowse link
mitotic chromosome condensation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Akap8 A-kinase anchoring protein 8 acts_upstream_of_or_within ISO (MGI:3512088|PMID:12082153) MGI PMID:12082153 MGI:3512088 NCBI chrNW_004955495:7,874,655...7,893,209
Ensembl chrNW_004955495:7,874,746...7,892,944
JBrowse link
G Akap8l A-kinase anchoring protein 8 like involved_in ISO (PMID:11034899) UniProt PMID:11034899 NCBI chrNW_004955495:7,839,339...7,874,432
Ensembl chrNW_004955495:7,839,339...7,874,432
JBrowse link
G Cdca5 cell division cycle associated 5 involved_in ISO (PMID:15837422) UniProt PMID:15837422 NCBI chrNW_004955422:20,114,565...20,129,679 JBrowse link
G Chmp1a charged multivesicular body protein 1A involved_in ISO (PMID:11559747) UniProt PMID:11559747 NCBI chrNW_004955541:3,216,972...3,223,636
Ensembl chrNW_004955541:3,216,972...3,223,634
JBrowse link
G Ncapd2 non-SMC condensin I complex subunit D2 involved_in ISO (PMID:11136719)
(PMID:27737959)
UniProt PMID:11136719 PMID:27737959 NCBI chrNW_004955413:4,136,492...4,160,550
Ensembl chrNW_004955413:4,137,216...4,160,550
JBrowse link
G Ncapd3 non-SMC condensin II complex subunit D3 involved_in ISO (PMID:27737959)
(PMID:14532007)
UniProt PMID:14532007 PMID:27737959 NCBI chrNW_004955412:34,967,464...35,035,103
Ensembl chrNW_004955412:34,963,854...35,035,111
JBrowse link
G Ncapg non-SMC condensin I complex subunit G involved_in ISO (PMID:11136719) UniProt PMID:11136719 NCBI chrNW_004955480:6,399,891...6,430,617
Ensembl chrNW_004955480:6,399,960...6,430,645
JBrowse link
G Ncaph non-SMC condensin I complex subunit H involved_in ISO (PMID:11136719), (PMID:11694586)
(PMID:27737959)
UniProt PMID:11136719 PMID:11694586 PMID:27737959 NCBI chrNW_004955470:3,878,896...3,909,087
Ensembl chrNW_004955470:3,878,883...3,909,146
JBrowse link
G Ncaph2 non-SMC condensin II complex subunit H2 involved_in ISO (MGI:5905517|PMID:27737959) UniProt PMID:27737959 MGI:5905517 NCBI chrNW_004955413:33,492,348...33,503,804 JBrowse link
G Nusap1 nucleolar and spindle associated protein 1 acts_upstream_of_or_within ISO (PMID:12963707) MGI PMID:12963707 NCBI chrNW_004955416:8,178,493...8,208,336 JBrowse link
G Phf13 PHD finger protein 13 involved_in ISO (PMID:19638409) UniProt PMID:19638409 NCBI chrNW_004955486:6,018,614...6,025,473
Ensembl chrNW_004955486:6,017,748...6,025,614
JBrowse link
G Smc2 structural maintenance of chromosomes 2 involved_in ISO (PMID:11136719) UniProt PMID:11136719 NCBI chrNW_004955419:22,245,843...22,294,508
Ensembl chrNW_004955419:22,245,843...22,294,508
JBrowse link
G Smc4 structural maintenance of chromosomes 4 involved_in ISO (PMID:11136719) UniProt PMID:11136719 NCBI chrNW_004955448:10,926,653...10,960,624
Ensembl chrNW_004955448:10,927,877...10,960,624
JBrowse link
G Ttn titin involved_in ISO (PMID:9548712) BHF-UCL PMID:9548712 NCBI chrNW_004955403:18,057,344...18,328,389 JBrowse link
negative regulation of chromosome condensation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G H3f3a H3 histone, family 3A acts_upstream_of_or_within ISO (MGI:5502235|PMID:23903189) MGI PMID:23903189 MGI:5502235 NCBI chrNW_004955489:269,900...278,398
Ensembl chrNW_004955489:269,900...278,398
JBrowse link
G H3f3b H3 histone, family 3B acts_upstream_of_or_within ISO (MGI:5502235|PMID:23903189) MGI PMID:23903189 MGI:5502235 NCBI chrNW_004955506:6,475,336...6,478,781
Ensembl chrNW_004955506:6,474,727...6,482,244
JBrowse link
negative regulation of DNA duplex unwinding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Top2a DNA topoisomerase II alpha involved_in ISO (PMID:12711669) UniProt PMID:12711669 NCBI chrNW_004955451:14,928,273...14,964,855
Ensembl chrNW_004955451:14,929,136...14,964,723
JBrowse link
negative regulation of DNA helicase activity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mnat1 MNAT1 component of CDK activating kinase involved_in ISO (PMID:11445587) UniProt PMID:11445587 NCBI chrNW_004955466:8,690,960...8,895,021
Ensembl chrNW_004955466:8,690,960...8,895,021
JBrowse link
negative regulation of ribosomal DNA heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Phf2 PHD finger protein 2 involved_in ISO (PMID:20129925) UniProt PMID:20129925 NCBI chrNW_004955515:4,428,068...4,471,642
Ensembl chrNW_004955515:4,429,957...4,471,641
JBrowse link
G Phf8 PHD finger protein 8 involved_in ISO (PMID:20208542) UniProt PMID:20208542 NCBI chrNW_004955475:1,105,619...1,230,758
Ensembl chrNW_004955475:1,105,619...1,230,756
JBrowse link
nucleosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Anp32b acidic nuclear phosphoprotein 32 family member B involved_in ISO (PMID:20538007) UniProt PMID:20538007 NCBI chrNW_004955419:27,471,539...27,553,078
Ensembl chrNW_004955419:27,471,930...27,488,065
JBrowse link
G Asf1a anti-silencing function 1A histone chaperone acts_upstream_of_or_within ISO (PMID:11897662) MGI PMID:11897662 NCBI chrNW_004955436:1,635,397...1,640,989
Ensembl chrNW_004955436:1,635,399...1,645,075
JBrowse link
G Asf1b anti-silencing function 1B histone chaperone acts_upstream_of_or_within ISO (MGI:2675150|PMID:12842904) MGI PMID:12842904 MGI:2675150 NCBI chrNW_004955415:32,818,592...32,828,651
Ensembl chrNW_004955415:32,817,547...32,828,651
JBrowse link
G Atrx ATRX chromatin remodeler involved_in ISO (PMID:20651253) UniProt PMID:20651253 NCBI chrNW_004955557:947,368...1,252,701
Ensembl chrNW_004955557:947,167...1,252,724
JBrowse link
G Brd2 bromodomain containing 2 involved_in ISO (PMID:18406326) UniProt PMID:18406326 NCBI chrNW_004955437:1,584,890...1,592,486
Ensembl chrNW_004955437:1,584,479...1,592,826
JBrowse link
G Daxx death domain associated protein involved_in ISO (PMID:20504901), (PMID:20651253)
(MGI:5567907|PMID:20651253)
UniProt PMID:20504901 PMID:20651253 MGI:5567907 NCBI chrNW_004955437:1,869,692...1,874,041
Ensembl chrNW_004955437:1,869,572...1,873,050
JBrowse link
G Dnajc9 DnaJ heat shock protein family (Hsp40) member C9 involved_in ISO (PMID:33857403) UniProt PMID:33857403 NCBI chrNW_004955437:18,485,975...18,491,561
Ensembl chrNW_004955437:18,485,975...18,491,608
JBrowse link
G Grwd1 glutamate rich WD repeat containing 1 involved_in ISO (PMID:27552915)
(PMID:25990725)
UniProt PMID:25990725 PMID:27552915 NCBI chrNW_004955559:2,033,743...2,039,493
Ensembl chrNW_004955559:2,029,414...2,039,493
JBrowse link
G H3f3a H3 histone, family 3A involved_in ISO (PMID:21636898)
(PMID:25615412)
UniProt PMID:21636898 PMID:25615412 NCBI chrNW_004955489:269,900...278,398
Ensembl chrNW_004955489:269,900...278,398
JBrowse link
G H3f3b H3 histone, family 3B involved_in ISO (PMID:25615412)
(PMID:21636898)
UniProt PMID:21636898 PMID:25615412 NCBI chrNW_004955506:6,475,336...6,478,781
Ensembl chrNW_004955506:6,474,727...6,482,244
JBrowse link
G Hmgb1 high mobility group box 1 involved_in ISO (PMID:2465778) AgBase PMID:2465778 NCBI chrNW_004955431:15,373,207...15,377,339
Ensembl chrNW_004955431:15,373,207...15,377,339
JBrowse link
G Hmgb2 high mobility group box 2 involved_in ISO (PMID:2465778) AgBase PMID:2465778 NCBI chrNW_004955403:33,656,314...33,659,115
Ensembl chrNW_004955403:33,656,300...33,659,428
JBrowse link
G LOC102006228 histone H3 involved_in ISO (PMID:25615412)
(PMID:20498094), (PMID:21636898), (PMID:24699735)
UniProt PMID:20498094 PMID:21636898 PMID:24699735 PMID:25615412 NCBI chrNW_004955465:13,338,289...13,339,268 JBrowse link
G LOC102021406 histone H2A involved_in ISO (PMID:22795134) UniProt PMID:22795134 NCBI chrNW_004955593:911,641...911,919 JBrowse link
G LOC102027630 histone H4 involved_in ISO (PMID:20498094), (PMID:21636898), (PMID:24699735), (PMID:25615412) UniProt PMID:20498094 PMID:21636898 PMID:24699735 PMID:25615412 NCBI chrNW_004955413:11,517,229...11,517,609
Ensembl chrNW_004955413:11,517,245...11,517,556
JBrowse link
G LOC102030314 histone H2B type 1-A involved_in
acts_upstream_of_or_within
ISO (PMID:24699735)
(MGI:3702345|PMID:17261847)
(MGI:5502464|PMID:23884607)
UniProt
MGI
PMID:17261847 PMID:23884607 PMID:24699735 MGI:3702345 MGI:5502464 NCBI chrNW_004955483:1,354,587...1,358,368 JBrowse link
G Mcm2 minichromosome maintenance complex component 2 acts_upstream_of_or_within ISO (MGI:2156014|PMID:10531422) MGI PMID:10531422 MGI:2156014 NCBI chrNW_004955429:16,012,345...16,027,151
Ensembl chrNW_004955429:16,012,173...16,027,277
JBrowse link
G Naa60 N-alpha-acetyltransferase 60, NatF catalytic subunit involved_in ISO (PMID:21981917) UniProt PMID:21981917 NCBI chrNW_004955442:13,895,248...13,926,152
Ensembl chrNW_004955442:13,895,248...13,918,723
JBrowse link
G Nap1l4 nucleosome assembly protein 1 like 4 involved_in ISO (PMID:9325046)
(MGI:5897488|PMID:28366643)
UniProt PMID:9325046 PMID:28366643 MGI:5897488 NCBI chrNW_004955422:14,630,858...14,673,171
Ensembl chrNW_004955422:14,628,371...14,673,165
JBrowse link
G Nasp nuclear autoantigenic sperm protein involved_in ISO (PMID:25615412) UniProt PMID:25615412 NCBI chrNW_004955464:12,667,050...12,697,021
Ensembl chrNW_004955464:12,667,050...12,697,769
JBrowse link
G Npm1 nucleophosmin 1 involved_in ISO (PMID:11602260) UniProt PMID:11602260 NCBI chrNW_004955408:24,151,070...24,218,783 JBrowse link
G Padi4 peptidyl arginine deiminase 4 involved_in ISO (MGI:5545819|PMID:24463520) UniProt PMID:24463520 MGI:5545819 NCBI chrNW_004955527:1,536,917...1,560,508
Ensembl chrNW_004955527:1,536,423...1,561,130
JBrowse link
G Rsf1 remodeling and spacing factor 1 involved_in ISO (PMID:12972596) UniProt PMID:12972596 NCBI chrNW_004955414:14,084,812...14,212,162
Ensembl chrNW_004955414:14,084,812...14,212,156
JBrowse link
G Sart3 spliceosome associated factor 3, U4/U6 recycling protein involved_in ISO (PMID:24526689) UniProt PMID:24526689 NCBI chrNW_004955455:9,802,260...9,833,326
Ensembl chrNW_004955455:9,802,260...9,832,957
JBrowse link
G Smarca5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 involved_in ISO (PMID:12972596) UniProt PMID:12972596 NCBI chrNW_004955471:12,206,462...12,240,219
Ensembl chrNW_004955471:12,203,318...12,237,333
JBrowse link
G Smyd3 SET and MYND domain containing 3 acts_upstream_of_or_within ISO (MGI:5500979|PMID:23752591) MGI PMID:23752591 MGI:5500979 NCBI chrNW_004955406:8,768,365...9,417,612
Ensembl chrNW_004955406:8,768,588...9,417,525
JBrowse link
G Sox9 SRY-box transcription factor 9 involved_in ISO (PMID:20484372) UniProt PMID:20484372 NCBI chrNW_004955478:941,684...945,563
Ensembl chrNW_004955478:940,177...945,563
JBrowse link
G Spty2d1 SPT2 chromatin protein domain containing 1 involved_in ISO (PMID:23378026) UniProt PMID:23378026 NCBI chrNW_004955414:33,255,048...33,272,861
Ensembl chrNW_004955414:33,256,850...33,272,556
JBrowse link
nucleosome positioning term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ctcf CCCTC-binding factor involved_in ISO (PMID:18654629) UniProt PMID:18654629 NCBI chrNW_004955484:9,041,226...9,092,924
Ensembl chrNW_004955484:9,042,524...9,064,927
JBrowse link
G H1-2 H1.2 linker histone, cluster member acts_upstream_of_or_within ISO (MGI:2664444|PMID:12808097) MGI PMID:12808097 MGI:2664444 NCBI chrNW_004955483:961,317...962,727
Ensembl chrNW_004955483:961,343...961,984
JBrowse link
G H1-4 H1.4 linker histone, cluster member acts_upstream_of_or_within ISO (MGI:2664444|PMID:12808097) MGI PMID:12808097 MGI:2664444 NCBI chrNW_004955483:870,957...871,724 JBrowse link
G LOC102023622 histone H1oo involved_in ISO (MGI:5559660|PMID:22868987) UniProt PMID:22868987 MGI:5559660 NCBI chrNW_004955429:17,778,193...17,783,307 JBrowse link
G Paf1 PAF1 homolog, Paf1/RNA polymerase II complex component involved_in ISO (PMID:22046413) CACAO PMID:22046413 NCBI chrNW_004955468:166,477...172,200 JBrowse link
G Rsf1 remodeling and spacing factor 1 involved_in ISO (PMID:9836642) UniProt PMID:9836642 NCBI chrNW_004955414:14,084,812...14,212,162
Ensembl chrNW_004955414:14,084,812...14,212,156
JBrowse link
G Smarca5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 involved_in ISO (PMID:9836642) UniProt PMID:9836642 NCBI chrNW_004955471:12,206,462...12,240,219
Ensembl chrNW_004955471:12,203,318...12,237,333
JBrowse link
nucleotide-excision repair, DNA duplex unwinding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ercc3 ERCC excision repair 3, TFIIH core complex helicase subunit involved_in ISO (PMID:17466626) UniProt PMID:17466626 NCBI chrNW_004955459:3,210,936...3,238,401
Ensembl chrNW_004955459:3,210,479...3,242,576
JBrowse link
pericentric heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cenpv centromere protein V involved_in ISO (PMID:18772885) UniProt PMID:18772885 NCBI chrNW_004955467:1,657,765...1,669,758 JBrowse link
G Dicer1 dicer 1, ribonuclease III acts_upstream_of_or_within ISO (MGI:3528782|PMID:15713842) MGI PMID:15713842 MGI:3528782 NCBI chrNW_004955438:17,374,899...17,431,599
Ensembl chrNW_004955438:17,382,493...17,431,797
JBrowse link
G H3f3a H3 histone, family 3A acts_upstream_of_or_within ISO (MGI:5694896|PMID:26159997) MGI PMID:26159997 MGI:5694896 NCBI chrNW_004955489:269,900...278,398
Ensembl chrNW_004955489:269,900...278,398
JBrowse link
G H3f3b H3 histone, family 3B acts_upstream_of_or_within ISO (MGI:5694896|PMID:26159997) MGI PMID:26159997 MGI:5694896 NCBI chrNW_004955506:6,475,336...6,478,781
Ensembl chrNW_004955506:6,474,727...6,482,244
JBrowse link
G Hells helicase, lymphoid specific involved_in ISO (MGI:3041983|PMID:14612388) UniProt PMID:14612388 MGI:3041983 NCBI chrNW_004955507:995,389...1,034,852
Ensembl chrNW_004955507:990,429...1,034,852
JBrowse link
positive regulation of DNA helicase activity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pot1 protection of telomeres 1 involved_in ISO (PMID:19734539) BHF-UCL PMID:19734539 NCBI chrNW_004955479:6,140,599...6,230,512
Ensembl chrNW_004955479:6,140,501...6,209,031
JBrowse link
G Ssbp1 single stranded DNA binding protein 1 involved_in ISO (PMID:15167897) FlyBase PMID:15167897 NCBI chrNW_004955494:1,807,885...1,826,375
Ensembl chrNW_004955494:1,814,106...1,826,375
JBrowse link
rDNA heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Baz2a bromodomain adjacent to zinc finger domain 2A acts_upstream_of_or_within
involved_in
ISO (MGI:4462332|PMID:20168299)
(MGI:3653583|PMID:16678107)
(MGI:3587127|PMID:16085498), (MGI:3852313|PMID:12198165), (MGI:3852588|PMID:19578370)
MGI
UniProt
PMID:12198165 PMID:16085498 PMID:16678107 PMID:19578370 PMID:20168299 MGI:3587127 MGI:3653583 MGI:3852313 MGI:3852588 MGI:4462332 NCBI chrNW_004955458:4,149,610...4,186,647
Ensembl chrNW_004955458:4,151,886...4,170,641
JBrowse link
G Bend3 BEN domain containing 3 involved_in ISO (PMID:26100909) UniProt PMID:26100909 NCBI chrNW_004955411:32,346,573...32,384,796
Ensembl chrNW_004955411:32,345,577...32,384,796
JBrowse link
G Rrp8 ribosomal RNA processing 8 involved_in ISO (PMID:18485871) UniProt PMID:18485871 NCBI chrNW_004955414:22,311,038...22,316,144
Ensembl chrNW_004955414:22,311,038...22,316,144
JBrowse link
G Sirt1 sirtuin 1 involved_in ISO (PMID:18485871) UniProt PMID:18485871 NCBI chrNW_004955425:20,280,725...20,307,663
Ensembl chrNW_004955425:20,279,963...20,307,663
JBrowse link
G Smarca5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 involved_in ISO (MGI:3587127|PMID:16085498) UniProt PMID:16085498 MGI:3587127 NCBI chrNW_004955471:12,206,462...12,240,219
Ensembl chrNW_004955471:12,203,318...12,237,333
JBrowse link
G Suv39h1 SUV39H1 histone lysine methyltransferase involved_in ISO (PMID:18485871) UniProt PMID:18485871 NCBI chrNW_004955543:258,479...271,128
Ensembl chrNW_004955543:258,479...272,473
JBrowse link
G Ubtf upstream binding transcription factor acts_upstream_of_or_within ISO (MGI:3836497|PMID:19103806) MGI PMID:19103806 MGI:3836497 NCBI chrNW_004955451:17,294,163...17,302,807
Ensembl chrNW_004955451:17,294,251...17,302,746
JBrowse link
regulation of chromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Parp10 poly(ADP-ribose) polymerase family member 10 involved_in ISO (PMID:15674325) UniProt PMID:15674325 NCBI chrNW_004955454:2,644,718...2,651,962
Ensembl chrNW_004955454:2,645,003...2,651,604
JBrowse link
G Spty2d1 SPT2 chromatin protein domain containing 1 involved_in ISO (PMID:26109053) UniProt PMID:26109053 NCBI chrNW_004955414:33,255,048...33,272,861
Ensembl chrNW_004955414:33,256,850...33,272,556
JBrowse link
regulation of chromosome condensation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ccnb1 cyclin B1 ISO positive regulation RGD PMID:15291744 RGD:1578405 NCBI chrNW_004955446:140,661...149,500
Ensembl chrNW_004955446:140,093...149,500
JBrowse link
G Mcph1 microcephalin 1 acts_upstream_of_or_within ISO (MGI:4437500|PMID:20169082) MGI PMID:20169082 MGI:4437500 NCBI chrNW_004955403:54,143,454...54,273,201 JBrowse link
G Wapl WAPL cohesin release factor acts_upstream_of_or_within ISO (MGI:5544860|PMID:23975099) MGI PMID:23975099 MGI:5544860 NCBI chrNW_004955510:5,596,622...5,674,221
Ensembl chrNW_004955510:5,593,335...5,674,221
JBrowse link
regulation of DNA helicase activity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pot1 protection of telomeres 1 involved_in ISO (PMID:19734539) BHF-UCL PMID:19734539 NCBI chrNW_004955479:6,140,599...6,230,512
Ensembl chrNW_004955479:6,140,501...6,209,031
JBrowse link
regulation of ribosomal DNA heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LOC102008188 core histone macro-H2A.1 NOT|involved_in ISO (PMID:24071584) UniProt PMID:24071584 NCBI chrNW_004955408:30,497,531...30,550,095
Ensembl chrNW_004955408:30,497,531...30,550,118
JBrowse link
sperm chromatin condensation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fshr follicle stimulating hormone receptor acts_upstream_of_or_within ISO (MGI:1855818|PMID:10775161) MGI PMID:10775161 MGI:1855818 NCBI chrNW_004955441:15,422,190...15,585,446
Ensembl chrNW_004955441:15,422,190...15,585,537
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G LOC106146871 testis-specific H1 histone involved_in ISO (MGI:3531623|PMID:15710904) UniProt PMID:15710904 MGI:3531623 NCBI chrNW_004955500:7,329,361...7,329,842 JBrowse link
G Selenof selenoprotein F ISO RGD PMID:11344099 RGD:728803 NCBI chrNW_004955423:7,253,980...7,285,442
Ensembl chrNW_004955423:7,254,214...7,285,179
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G Sycp1 synaptonemal complex protein 1 acts_upstream_of_or_within ISO (MGI:5315075|PMID:22164254) MGI PMID:22164254 MGI:5315075 NCBI chrNW_004955435:18,157,173...18,291,732 JBrowse link
G Sycp3 synaptonemal complex protein 3 acts_upstream_of_or_within ISO (MGI:5315075|PMID:22164254) MGI PMID:22164254 MGI:5315075 NCBI chrNW_004955405:37,093,330...37,102,789
Ensembl chrNW_004955405:37,093,652...37,102,856
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G Tssk6 testis specific serine kinase 6 involved_in ISO (MGI:3580211|PMID:15870294) UniProt PMID:15870294 MGI:3580211 NCBI chrNW_004955524:2,433,855...2,434,864
Ensembl chrNW_004955524:2,433,955...2,434,776
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spermatogenesis, exchange of chromosomal proteins term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Chd5 chromodomain helicase DNA binding protein 5 involved_in ISO (MGI:5559810|PMID:24252660) UniProt PMID:24252660 MGI:5559810 NCBI chrNW_004955486:6,320,380...6,369,020
Ensembl chrNW_004955486:6,320,380...6,369,065
JBrowse link
G Fshr follicle stimulating hormone receptor acts_upstream_of_or_within ISO (MGI:2682484|PMID:14680821) MGI PMID:14680821 MGI:2682484 NCBI chrNW_004955441:15,422,190...15,585,446
Ensembl chrNW_004955441:15,422,190...15,585,537
JBrowse link
G LOC102030314 histone H2B type 1-A involved_in ISO (MGI:5502464|PMID:23884607) UniProt PMID:23884607 MGI:5502464 NCBI chrNW_004955483:1,354,587...1,358,368 JBrowse link
G Piwil1 piwi like RNA-mediated gene silencing 1 involved_in ISO (MGI:5905675|PMID:28552346) UniProt PMID:28552346 MGI:5905675 NCBI chrNW_004955482:1,435,925...1,451,067
Ensembl chrNW_004955482:1,435,925...1,450,857
JBrowse link
G Psme4 proteasome activator subunit 4 involved_in ISO (MGI:5494329|PMID:23706739) UniProt PMID:23706739 MGI:5494329 NCBI chrNW_004955441:19,586,567...19,663,335
Ensembl chrNW_004955441:19,588,597...19,663,334
JBrowse link
G Rnf8 ring finger protein 8 involved_in ISO (MGI:5905675|PMID:28552346) UniProt PMID:28552346 MGI:5905675 NCBI chrNW_004955437:5,807,592...5,832,213
Ensembl chrNW_004955437:5,809,082...5,832,057
JBrowse link
G Sycp3 synaptonemal complex protein 3 involved_in ISO (PMID:14643120) UniProt PMID:14643120 NCBI chrNW_004955405:37,093,330...37,102,789
Ensembl chrNW_004955405:37,093,652...37,102,856
JBrowse link
G Tnp1 transition protein 1 involved_in ISO (MGI:3041389|PMID:15083521), (MGI:3056208|PMID:15189834), (MGI:3620321|PMID:15163613), (MGI:5897488|PMID:28366643) UniProt PMID:15083521 PMID:15163613 PMID:15189834 PMID:28366643 MGI:3041389 MGI:3056208 MGI:3620321 MGI:5897488 NCBI chrNW_004955453:16,387,897...16,388,513
Ensembl chrNW_004955453:16,387,527...16,388,890
JBrowse link
G Tnp2 transition protein 2 involved_in ISO (MGI:3041389|PMID:15083521), (MGI:3056208|PMID:15189834), (MGI:3620321|PMID:15163613), (MGI:5897488|PMID:28366643) UniProt PMID:15083521 PMID:15163613 PMID:15189834 PMID:28366643 MGI:3041389 MGI:3056208 MGI:3620321 MGI:5897488 NCBI chrNW_004955442:7,311,826...7,314,046 JBrowse link

Term paths to the root
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  biological_process 11981
    cellular process 11218
      cellular component organization or biogenesis 4794
        cellular component organization 4710
          organelle organization 2804
            chromosome organization 589
              DNA conformation change 129
                DNA geometric change + 31
                DNA packaging + 96
                DNA topological change 6
paths to the root