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ONTOLOGY REPORT - ANNOTATIONS


Term:DNA conformation change
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Accession:GO:0071103 term browser browse the term
Definition:A cellular process that results in a change in the spatial configuration of a DNA molecule. A conformation change can bend DNA, or alter the, twist, writhe, or linking number of a DNA molecule.
Synonyms:exact_synonym: DNA conformation modification



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DNA conformation change term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ABL1 ABL proto-oncogene 1, non-receptor tyrosine kinase involved_in ISO (PMID:9558345) ARUK-UCL PMID:9558345 NCBI chr 9:101,834,189...102,005,811
Ensembl chr 9:130,484,333...130,652,941
JBrowse link
G HHEX hematopoietically expressed homeobox involved_in ISO (PMID:18755198) BHF-UCL PMID:18755198 NCBI chr10:89,433,402...89,439,137
Ensembl chr10:92,947,373...92,952,992
JBrowse link
apoptotic chromosome condensation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACIN1 apoptotic chromatin condensation inducer 1 involved_in ISO (PMID:10490026) UniProt PMID:10490026 NCBI chr14:3,878,426...3,915,802
Ensembl chr14:21,975,370...22,012,092
JBrowse link
G DFFB DNA fragmentation factor subunit beta involved_in ISO (PMID:10959840) UniProt PMID:10959840 NCBI chr 1:2,529,733...2,559,490
Ensembl chr 1:3,649,729...3,676,896
JBrowse link
G ERN2 endoplasmic reticulum to nucleus signaling 2 involved_in ISO (PMID:11175748) UniProt PMID:11175748 NCBI chr16:14,397,697...14,420,618
Ensembl chr16:23,940,716...23,963,894
JBrowse link
G LOC100967334 G-protein coupled estrogen receptor 1 involved_in ISO PMID:23907461 UniProt PMID:23907461 RGD:8553942 NCBI chr 7:1,245,873...1,251,915 JBrowse link
G TOP2A DNA topoisomerase II alpha involved_in ISO (PMID:10959840) UniProt PMID:10959840 NCBI chr17:16,872,169...16,901,605
Ensembl chr17:17,097,778...17,126,207
JBrowse link
CENP-A containing chromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HJURP Holliday junction recognition protein involved_in ISO (PMID:19410544), (PMID:19410545) UniProt PMID:19410544 PMID:19410545 NCBI chr2B:121,076,314...121,096,783
Ensembl chr2B:239,950,984...239,967,955
JBrowse link
G MIS18A MIS18 kinetochore protein A acts_upstream_of_or_within ISO (MGI:5438906|PMID:22516971) MGI PMID:22516971 MGI:5438906 NCBI chr21:18,635,735...18,646,611
Ensembl chr21:32,016,547...32,027,430
JBrowse link
chromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CDAN1 codanin 1 involved_in ISO (PMID:22407294) UniProt PMID:22407294 NCBI chr15:21,684,234...21,697,840
Ensembl chr15:39,838,604...39,851,562
JBrowse link
G CHAF1A chromatin assembly factor 1 subunit A involved_in ISO (PMID:8858152) UniProt PMID:8858152 NCBI chr19:3,425,182...3,461,646
Ensembl chr19:4,375,379...4,409,339
JBrowse link
G CHAF1B chromatin assembly factor 1 subunit B involved_in ISO (PMID:8858152) UniProt PMID:8858152 NCBI chr21:22,755,721...22,786,958
Ensembl chr21:36,113,971...36,143,575
JBrowse link
G HMGB1 high mobility group box 1 involved_in ISO (MGI:3807115|PMID:18650382) UniProt PMID:18650382 MGI:3807115 NCBI chr13:11,737,942...11,894,923
Ensembl chr13:30,174,899...30,179,527
JBrowse link
G NOC2L NOC2 like nucleolar associated transcriptional repressor involved_in ISO (PMID:16322561) UniProt PMID:16322561 Ensembl chr 1:843,551...857,535 JBrowse link
G RBBP4 RB binding protein 4, chromatin remodeling factor involved_in ISO (PMID:8858152) UniProt PMID:8858152 NCBI chr 1:31,944,257...31,974,763
Ensembl chr 1:33,111,234...33,140,518
JBrowse link
G TP53 tumor protein p53 involved_in ISO (PMID:16322561) UniProt PMID:16322561 NCBI chr17:7,699,449...7,717,812
Ensembl chr17:7,684,922...7,706,120
JBrowse link
chromosome condensation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CDK1 cyclin dependent kinase 1 ISO RGD PMID:15695611 RGD:2301352 NCBI chr10:57,314,692...57,331,261
Ensembl chr10:59,647,993...59,664,434
JBrowse link
G SMC5 structural maintenance of chromosomes 5 acts_upstream_of_or_within ISO (MGI:5882483|PMID:26919979) MGI PMID:26919979 MGI:5882483 NCBI chr 9:54,446,863...54,543,249 JBrowse link
G TOP2A DNA topoisomerase II alpha acts_upstream_of_or_within ISO (MGI:2158879|PMID:11835580) MGI PMID:11835580 MGI:2158879 NCBI chr17:16,872,169...16,901,605
Ensembl chr17:17,097,778...17,126,207
JBrowse link
DNA duplex unwinding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ANXA1 annexin A1 ISO RGD PMID:20655937 RGD:7421590 NCBI chr 9:51,647,404...51,665,990
Ensembl chr 9:71,929,728...71,948,779
JBrowse link
G ASCC3 activating signal cointegrator 1 complex subunit 3 involved_in ISO (PMID:22055184) UniProt PMID:22055184 NCBI chr 6:98,345,023...98,720,332
Ensembl chr 6:102,224,820...102,599,521
JBrowse link
G BLM BLM RecQ like helicase involved_in ISO (PMID:11735402), (PMID:24816114), (PMID:25901030) BHF-UCL PMID:11735402 PMID:24816114 PMID:25901030 NCBI chr15:69,407,248...69,508,070
Ensembl chr15:88,607,157...88,707,864
JBrowse link
G DDX1 DEAD-box helicase 1 involved_in ISO (PMID:18710941) UniProt PMID:18710941 NCBI chr2A:15,582,499...15,619,751
Ensembl chr2A:15,716,044...15,753,623
JBrowse link
G DDX11 DEAD/H-box helicase 11 involved_in ISO (PMID:10648783), (PMID:18499658), (PMID:26503245) UniProt PMID:10648783 PMID:18499658 PMID:26503245 NCBI chr12:55,176,165...55,207,123 JBrowse link
G DHX9 DExH-box helicase 9 involved_in ISO (PMID:21561811), (PMID:9111062)
(PMID:12711669)
UniProt PMID:9111062 PMID:12711669 PMID:21561811 NCBI chr 1:158,355,472...158,404,178
Ensembl chr 1:162,006,822...162,055,833
JBrowse link
G MCM9 minichromosome maintenance 9 homologous recombination repair factor involved_in ISO (PMID:26300262) UniProt PMID:26300262 NCBI chr 6:116,620,188...116,743,435
Ensembl chr 6:120,763,329...120,881,865
JBrowse link
G MRE11 MRE11 homolog, double strand break repair nuclease involved_in ISO (PMID:15790808) BHF-UCL PMID:15790808 NCBI chr11:89,418,537...89,500,705
Ensembl chr11:92,918,549...92,985,966
JBrowse link
G NBN nibrin involved_in ISO (PMID:15790808) BHF-UCL PMID:15790808 NCBI chr 8:86,622,797...86,674,202
Ensembl chr 8:88,575,198...88,626,307
JBrowse link
G POT1 protection of telomeres 1 involved_in ISO (PMID:16030011) BHF-UCL PMID:16030011 NCBI chr 7:116,807,913...116,926,998
Ensembl chr 7:129,487,571...129,605,558
JBrowse link
G RAD50 RAD50 double strand break repair protein involved_in ISO (PMID:15790808) BHF-UCL PMID:15790808 NCBI chr 5:127,972,630...128,059,911 JBrowse link
G RTEL1 regulator of telomere elongation helicase 1 involved_in ISO (MGI:5522574|PMID:24115439) BHF-UCL PMID:24115439 MGI:5522574
G SUPV3L1 Suv3 like RNA helicase involved_in ISO (PMID:12466530) UniProt PMID:12466530 NCBI chr10:65,647,273...65,676,179
Ensembl chr10:68,180,671...68,209,538
JBrowse link
G TREX1 three prime repair exonuclease 1 acts_upstream_of_or_within ISO (MGI:5637600|PMID:25848017) MGI PMID:25848017 MGI:5637600 NCBI chr 3:48,387,762...48,389,693
Ensembl chr 3:49,470,222...49,471,331
JBrowse link
G WRN WRN RecQ like helicase involved_in ISO (PMID:11735402), (PMID:26420422) BHF-UCL PMID:11735402 PMID:26420422 NCBI chr 8:30,353,643...30,492,978
Ensembl chr 8:27,541,145...27,679,855
JBrowse link
DNA geometric change term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HMGB1 high mobility group box 1 acts_upstream_of_or_within ISO PMID:10962007 MGI PMID:10962007 RGD:8554262 NCBI chr13:11,737,942...11,894,923
Ensembl chr13:30,174,899...30,179,527
JBrowse link
G MTERF1 mitochondrial transcription termination factor 1 involved_in ISO (PMID:20550934) UniProt PMID:20550934 NCBI chr 7:83,873,039...83,882,815
Ensembl chr 7:97,473,701...97,478,476
JBrowse link
DNA packaging term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LOC100979289 histone H2B type 1-A acts_upstream_of_or_within ISO (MGI:3702345|PMID:17261847) MGI PMID:17261847 MGI:3702345 NCBI chr 6:25,561,518...25,562,817
Ensembl chr 6:25,887,397...25,887,780
JBrowse link
DNA replication-dependent chromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ASF1A anti-silencing function 1A histone chaperone involved_in ISO (PMID:14718166) UniProt PMID:14718166 NCBI chr 6:116,702,314...116,717,445
Ensembl chr 6:120,843,461...120,858,471
JBrowse link
G ASF1B anti-silencing function 1B histone chaperone involved_in ISO (PMID:14718166) UniProt PMID:14718166 NCBI chr19:13,685,617...13,702,367
Ensembl chr19:14,411,127...14,428,917
JBrowse link
G CHAF1A chromatin assembly factor 1 subunit A involved_in ISO (PMID:14718166) UniProt PMID:14718166 NCBI chr19:3,425,182...3,461,646
Ensembl chr19:4,375,379...4,409,339
JBrowse link
G CHAF1B chromatin assembly factor 1 subunit B involved_in ISO (PMID:14718166) UniProt PMID:14718166 NCBI chr21:22,755,721...22,786,958
Ensembl chr21:36,113,971...36,143,575
JBrowse link
G HAT1 histone acetyltransferase 1 involved_in ISO (PMID:14718166) UniProt PMID:14718166 NCBI chr2B:59,211,555...59,281,203
Ensembl chr2B:176,670,029...176,739,120
JBrowse link
G IPO4 importin 4 involved_in ISO (PMID:14718166) UniProt PMID:14718166 NCBI chr14:4,956,456...4,965,305
Ensembl chr14:23,079,910...23,088,610
JBrowse link
G LOC100981824 histone H4 involved_in ISO (PMID:14718166) UniProt PMID:14718166 NCBI chr 6:26,971,978...26,975,626
Ensembl chr 6:27,634,245...27,634,556
JBrowse link
G LOC100985978 histone H3.1 involved_in ISO (PMID:14718166) UniProt PMID:14718166 NCBI chr 6:27,642,894...27,644,248
Ensembl chr 6:26,523,132...26,523,542
JBrowse link
G LOC100991861 histone H3.1 involved_in ISO (PMID:14718166) UniProt PMID:14718166 NCBI chr 6:25,865,046...25,865,544
Ensembl chr 6:26,523,132...26,523,542
JBrowse link
G LOC100992212 histone H4 involved_in ISO (PMID:14718166) UniProt PMID:14718166 NCBI chr 6:25,858,656...25,860,724
Ensembl chr 6:26,513,070...26,513,381
JBrowse link
G LOC112440133 histone H2A type 1-H involved_in ISO (PMID:14718166) UniProt PMID:14718166 NCBI chr 6:26,032,198...26,034,578
Ensembl chr 6:26,694,469...26,694,861
Ensembl chr 6:26,694,469...26,694,861
JBrowse link
G LOC112440134 histone H4 involved_in ISO (PMID:14718166) UniProt PMID:14718166 NCBI chr 6:26,022,725...26,024,812 JBrowse link
G LOC117974259 histone H4 involved_in ISO (PMID:14718166) UniProt PMID:14718166 NCBI chr12:14,776,653...14,777,244 JBrowse link
G LOC117975185 histone H4 involved_in ISO (PMID:14718166) UniProt PMID:14718166 NCBI chr 1:125,196,600...125,205,588 JBrowse link
G NASP nuclear autoantigenic sperm protein involved_in
acts_upstream_of_or_within
ISO (PMID:14718166)
(MGI:3694318|PMID:16728391)
UniProt PMID:14718166 PMID:16728391 MGI:3694318 NCBI chr 1:44,885,433...44,920,159
Ensembl chr 1:46,242,841...46,278,737
JBrowse link
G RBBP4 RB binding protein 4, chromatin remodeling factor involved_in ISO (PMID:14718166) UniProt PMID:14718166 NCBI chr 1:31,944,257...31,974,763
Ensembl chr 1:33,111,234...33,140,518
JBrowse link
DNA replication-independent chromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ASF1A anti-silencing function 1A histone chaperone involved_in ISO (PMID:14718166) UniProt PMID:14718166 NCBI chr 6:116,702,314...116,717,445
Ensembl chr 6:120,843,461...120,858,471
JBrowse link
G ASF1B anti-silencing function 1B histone chaperone involved_in ISO (PMID:14718166) UniProt PMID:14718166 NCBI chr19:13,685,617...13,702,367
Ensembl chr19:14,411,127...14,428,917
JBrowse link
G ATRX ATRX chromatin remodeler involved_in ISO (PMID:22391447) UniProt PMID:22391447 NCBI chr  X:66,682,968...66,969,421
Ensembl chr  X:76,795,574...77,083,486
JBrowse link
G CABIN1 calcineurin binding protein 1 involved_in ISO (PMID:14718166) UniProt PMID:14718166 NCBI chr22:4,816,411...4,984,760
Ensembl chr22:22,927,572...23,070,165
JBrowse link
G HAT1 histone acetyltransferase 1 involved_in ISO (PMID:14718166) UniProt PMID:14718166 NCBI chr2B:59,211,555...59,281,203
Ensembl chr2B:176,670,029...176,739,120
JBrowse link
G IPO4 importin 4 involved_in ISO (PMID:14718166) UniProt PMID:14718166 NCBI chr14:4,956,456...4,965,305
Ensembl chr14:23,079,910...23,088,610
JBrowse link
G LOC100970414 histone H3.3A involved_in ISO (PMID:14718166) UniProt PMID:14718166 NCBI chr 1:201,523,670...201,533,005
Ensembl chr 1:206,520,109...206,529,447
JBrowse link
G LOC100977781 protein HIRA involved_in ISO (PMID:14718166) UniProt PMID:14718166 NCBI chr22:2,087,846...2,191,192
Ensembl chr22:17,765,598...17,847,084
JBrowse link
G LOC100981824 histone H4 involved_in ISO (PMID:14718166) UniProt PMID:14718166 NCBI chr 6:26,971,978...26,975,626
Ensembl chr 6:27,634,245...27,634,556
JBrowse link
G LOC100988671 histone H3.3A involved_in ISO (PMID:14718166) UniProt PMID:14718166 NCBI chr17:69,728,165...69,730,519
Ensembl chr17:75,277,614...75,281,106
JBrowse link
G LOC100992212 histone H4 involved_in ISO (PMID:14718166) UniProt PMID:14718166 NCBI chr 6:25,858,656...25,860,724
Ensembl chr 6:26,513,070...26,513,381
JBrowse link
G LOC112440134 histone H4 involved_in ISO (PMID:14718166) UniProt PMID:14718166 NCBI chr 6:26,022,725...26,024,812 JBrowse link
G LOC117974259 histone H4 involved_in ISO (PMID:14718166) UniProt PMID:14718166 NCBI chr12:14,776,653...14,777,244 JBrowse link
G LOC117975185 histone H4 involved_in ISO (PMID:14718166) UniProt PMID:14718166 NCBI chr 1:125,196,600...125,205,588 JBrowse link
G NASP nuclear autoantigenic sperm protein involved_in ISO (PMID:14718166) UniProt PMID:14718166 NCBI chr 1:44,885,433...44,920,159
Ensembl chr 1:46,242,841...46,278,737
JBrowse link
G RBBP4 RB binding protein 4, chromatin remodeling factor involved_in ISO (PMID:14718166) UniProt PMID:14718166 NCBI chr 1:31,944,257...31,974,763
Ensembl chr 1:33,111,234...33,140,518
JBrowse link
G UBN1 ubinuclein 1 involved_in ISO (PMID:14718166) UniProt PMID:14718166 NCBI chr16:3,771,623...3,806,575
Ensembl chr16:4,942,191...4,970,986
JBrowse link
DNA rewinding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ZRANB3 zinc finger RANBP2-type containing 3 involved_in ISO (PMID:21078962), (PMID:22705370) UniProt PMID:21078962 PMID:22705370 NCBI chr2B:24,331,731...24,665,652
Ensembl chr2B:139,234,909...139,577,193
JBrowse link
DNA topological change term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ERCC3 ERCC excision repair 3, TFIIH core complex helicase subunit involved_in ISO (PMID:8663148) UniProt PMID:8663148 NCBI chr2B:32,983,492...33,020,492
Ensembl chr2B:127,922,483...127,959,372
JBrowse link
G HMGB2 high mobility group box 2 involved_in ISO (PMID:11275566) AgBase PMID:11275566 NCBI chr 4:165,559,848...165,562,625
Ensembl chr 4:177,797,457...177,800,952
JBrowse link
G TOP1 DNA topoisomerase I acts_upstream_of_or_within
involved_in
ISO (MGI:3612364|PMID:16261531), (MGI:70738|PMID:7842491)
(PMID:14654701), (PMID:8567649), (PMID:8631793), (PMID:8631794), (PMID:9611241)
(PMID:14594810)
RGD
MGI
CAFA
UniProt
PMID:1332866 PMID:7842491 PMID:8567649 PMID:8631793 PMID:8631794 More... MGI:3612364 MGI:70738 RGD:1580856 NCBI chr20:37,368,606...37,464,649
Ensembl chr20:38,468,452...38,562,652
JBrowse link
G TOP2A DNA topoisomerase II alpha acts_upstream_of_or_within
involved_in
ISO (MGI:51613|PMID:1331984), (MGI:895157|PMID:9224616)
(PMID:12711669)
(PMID:22323612)
RGD
MGI
UniProt
PMID:1331984 PMID:9224616 PMID:11334111 PMID:12711669 PMID:22323612 MGI:51613 MGI:895157 RGD:1580614 NCBI chr17:16,872,169...16,901,605
Ensembl chr17:17,097,778...17,126,207
JBrowse link
G TOP2B DNA topoisomerase II beta involved_in ISO (PMID:10684600) UniProt PMID:10684600 NCBI chr 3:25,499,239...25,566,029
Ensembl chr 3:25,828,879...25,896,912
JBrowse link
G TOP3A DNA topoisomerase III alpha involved_in ISO (PMID:20445207) UniProt PMID:20445207 NCBI chr17:32,814,448...32,858,076
Ensembl chr17:37,897,037...37,936,135
JBrowse link
DNA unwinding involved in DNA replication term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G MCM2 minichromosome maintenance complex component 2 acts_upstream_of_or_within ISO (MGI:2156014|PMID:10531422) MGI PMID:10531422 MGI:2156014 NCBI chr 3:124,643,362...124,667,121
Ensembl chr 3:131,950,887...131,974,641
JBrowse link
G MCM4 minichromosome maintenance complex component 4 acts_upstream_of_or_within ISO (MGI:3582148|PMID:15917436) MGI PMID:15917436 MGI:3582148 NCBI chr 8:44,387,529...44,404,773
Ensembl chr 8:41,778,247...41,794,783
JBrowse link
G MCM6 minichromosome maintenance complex component 6 acts_upstream_of_or_within ISO (MGI:3582148|PMID:15917436) MGI PMID:15917436 MGI:3582148 NCBI chr2B:23,986,278...24,023,045
Ensembl chr2B:139,911,909...139,947,687
JBrowse link
G MCM7 minichromosome maintenance complex component 7 acts_upstream_of_or_within ISO (MGI:3582148|PMID:15917436) MGI PMID:15917436 MGI:3582148 NCBI chr 7:92,128,037...92,136,976
Ensembl chr 7:105,561,591...105,570,720
JBrowse link
G PURA purine rich element binding protein A involved_in ISO (PMID:15777841) UniProt PMID:15777841 NCBI chr 5:135,480,983...135,486,280
Ensembl chr 5:141,598,580...141,599,762
JBrowse link
G RAD51 RAD51 recombinase involved_in ISO (PMID:7988572) UniProt PMID:7988572 NCBI chr15:19,638,310...19,672,474
Ensembl chr15:37,891,056...37,925,207
JBrowse link
G SSBP1 single stranded DNA binding protein 1 involved_in ISO (PMID:26446790) FlyBase PMID:26446790 NCBI chr 7:133,670,085...133,682,228
Ensembl chr 7:146,139,837...146,151,495
JBrowse link
G TWNK twinkle mtDNA helicase involved_in
acts_upstream_of_or_within
ISO (PMID:15167897)
(MGI:2136707|PMID:11431692)
FlyBase
MGI
PMID:11431692 PMID:15167897 MGI:2136707 NCBI chr10:97,588,811...97,595,663
Ensembl chr10:101,065,096...101,071,407
JBrowse link
G-quadruplex DNA unwinding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BLM BLM RecQ like helicase involved_in ISO (PMID:11735402)
(MGI:5700122|PMID:26195664)
BHF-UCL PMID:11735402 PMID:26195664 MGI:5700122 NCBI chr15:69,407,248...69,508,070
Ensembl chr15:88,607,157...88,707,864
JBrowse link
G DDX11 DEAD/H-box helicase 11 involved_in ISO (PMID:26503245) UniProt PMID:26503245 NCBI chr12:55,176,165...55,207,123 JBrowse link
G DHX36 DEAH-box helicase 36 involved_in ISO (PMID:16150737), (PMID:18842585)
(MGI:6201778|PMID:25611385)
UniProt PMID:16150737 PMID:18842585 PMID:25611385 MGI:6201778 NCBI chr 3:151,331,468...151,382,406
Ensembl chr 3:158,885,541...158,935,871
JBrowse link
G DHX9 DExH-box helicase 9 involved_in ISO (PMID:21561811) UniProt PMID:21561811 NCBI chr 1:158,355,472...158,404,178
Ensembl chr 1:162,006,822...162,055,833
JBrowse link
G HNRNPA2B1 heterogeneous nuclear ribonucleoprotein A2/B1 involved_in ISO PMID:23184978 BHF-UCL PMID:23184978 RGD:11567256 NCBI chr 7:26,835,881...26,846,578
Ensembl chr 7:26,439,443...26,449,985
JBrowse link
G WRN WRN RecQ like helicase involved_in ISO (PMID:11735402)
(MGI:5700122|PMID:26195664)
BHF-UCL PMID:11735402 PMID:26195664 MGI:5700122 NCBI chr 8:30,353,643...30,492,978
Ensembl chr 8:27,541,145...27,679,855
JBrowse link
histone H3-S10 phosphorylation involved in chromosome condensation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CCNB1 cyclin B1 acts_upstream_of_or_within ISO (MGI:5494393|PMID:22053081) MGI PMID:22053081 MGI:5494393 NCBI chr 5:44,826,103...44,836,832
Ensembl chr 5:46,394,362...46,405,332
JBrowse link
meiotic chromosome condensation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G MASTL microtubule associated serine/threonine kinase like involved_in ISO (PMID:23843240) AgBase PMID:23843240 NCBI chr10:27,264,475...27,296,085
Ensembl chr10:27,626,892...27,658,180
JBrowse link
G NCAPH non-SMC condensin I complex subunit H acts_upstream_of_or_within
involved_in
ISO (MGI:5317363|PMID:21795393)
(MGI:5784807|PMID:25961503)
MGI PMID:21795393 PMID:25961503 MGI:5317363 MGI:5784807 NCBI chr2A:102,939,357...102,980,091
Ensembl chr2A:97,258,412...97,299,906
JBrowse link
G NCAPH2 non-SMC condensin II complex subunit H2 involved_in ISO (MGI:5784807|PMID:25961503) MGI PMID:25961503 MGI:5784807 NCBI chr22:30,754,994...30,771,103
Ensembl chr22:49,873,223...49,881,027
JBrowse link
G SMC2 structural maintenance of chromosomes 2 acts_upstream_of_or_within ISO (MGI:5317363|PMID:21795393) MGI PMID:21795393 MGI:5317363 NCBI chr 9:75,273,163...75,323,486
Ensembl chr 9:103,402,967...103,449,949
JBrowse link
G SMC4 structural maintenance of chromosomes 4 acts_upstream_of_or_within ISO (MGI:5317363|PMID:21795393) MGI PMID:21795393 MGI:5317363 NCBI chr 3:157,421,548...157,456,593
Ensembl chr 3:165,469,567...165,504,967
JBrowse link
mitotic chromosome condensation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AKAP8 A-kinase anchoring protein 8 acts_upstream_of_or_within ISO (MGI:3512088|PMID:12082153) MGI PMID:12082153 MGI:3512088 NCBI chr19:14,888,201...14,912,739
Ensembl chr19:15,872,536...15,897,661
JBrowse link
G AKAP8L A-kinase anchoring protein 8 like involved_in ISO (PMID:11034899) UniProt PMID:11034899 NCBI chr19:14,912,960...14,950,479
Ensembl chr19:15,897,969...15,936,486
JBrowse link
G CHMP1A charged multivesicular body protein 1A involved_in ISO (PMID:11559747) UniProt PMID:11559747 NCBI chr16:70,398,021...70,411,383
Ensembl chr16:90,003,892...90,017,653
JBrowse link
G NCAPD2 non-SMC condensin I complex subunit D2 involved_in ISO (PMID:11136719)
(PMID:27737959)
UniProt PMID:11136719 PMID:27737959 NCBI chr12:6,623,568...6,662,741
Ensembl chr12:6,540,750...6,580,206
JBrowse link
G NCAPD3 non-SMC condensin II complex subunit D3 involved_in ISO (PMID:14532007)
(PMID:27737959)
UniProt PMID:14532007 PMID:27737959 NCBI chr11:129,005,365...129,078,581
Ensembl chr11:132,865,349...132,935,590
JBrowse link
G NCAPG non-SMC condensin I complex subunit G involved_in ISO (PMID:11136719) UniProt PMID:11136719 NCBI chr 4:12,232,614...12,265,320
Ensembl chr 4:17,524,826...17,571,798
JBrowse link
G NCAPH non-SMC condensin I complex subunit H involved_in ISO (PMID:11136719), (PMID:11694586)
(PMID:27737959)
UniProt PMID:11136719 PMID:11694586 PMID:27737959 NCBI chr2A:102,939,357...102,980,091
Ensembl chr2A:97,258,412...97,299,906
JBrowse link
G NCAPH2 non-SMC condensin II complex subunit H2 involved_in ISO (MGI:5905517|PMID:27737959) UniProt PMID:27737959 MGI:5905517 NCBI chr22:30,754,994...30,771,103
Ensembl chr22:49,873,223...49,881,027
JBrowse link
G NUSAP1 nucleolar and spindle associated protein 1 acts_upstream_of_or_within ISO (PMID:12963707) MGI PMID:12963707 NCBI chr15:20,273,953...20,322,512 JBrowse link
G PHF13 PHD finger protein 13 involved_in ISO (PMID:19638409) UniProt PMID:19638409 NCBI chr 1:5,377,740...5,388,024
Ensembl chr 1:6,631,621...6,639,972
JBrowse link
G SMC2 structural maintenance of chromosomes 2 involved_in ISO (PMID:11136719) UniProt PMID:11136719 NCBI chr 9:75,273,163...75,323,486
Ensembl chr 9:103,402,967...103,449,949
JBrowse link
G SMC4 structural maintenance of chromosomes 4 involved_in ISO (PMID:11136719) UniProt PMID:11136719 NCBI chr 3:157,421,548...157,456,593
Ensembl chr 3:165,469,567...165,504,967
JBrowse link
G TTN titin involved_in ISO (PMID:9548712) BHF-UCL PMID:9548712 NCBI chr2B:65,783,512...66,064,618 JBrowse link
negative regulation of chromosome condensation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LOC100970414 histone H3.3A acts_upstream_of_or_within ISO (MGI:5502235|PMID:23903189) MGI PMID:23903189 MGI:5502235 NCBI chr 1:201,523,670...201,533,005
Ensembl chr 1:206,520,109...206,529,447
JBrowse link
G LOC100988671 histone H3.3A acts_upstream_of_or_within ISO (MGI:5502235|PMID:23903189) MGI PMID:23903189 MGI:5502235 NCBI chr17:69,728,165...69,730,519
Ensembl chr17:75,277,614...75,281,106
JBrowse link
negative regulation of DNA duplex unwinding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G TOP2A DNA topoisomerase II alpha involved_in ISO (PMID:12711669) UniProt PMID:12711669 NCBI chr17:16,872,169...16,901,605
Ensembl chr17:17,097,778...17,126,207
JBrowse link
negative regulation of DNA helicase activity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G MNAT1 MNAT1 component of CDK activating kinase involved_in ISO (PMID:11445587) UniProt PMID:11445587 NCBI chr14:41,342,530...41,576,690
Ensembl chr14:59,603,209...59,835,408
JBrowse link
negative regulation of ribosomal DNA heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PHF2 PHD finger protein 2 involved_in ISO (PMID:20129925) UniProt PMID:20129925 NCBI chr 9:64,700,151...64,803,737
Ensembl chr 9:92,815,392...92,863,817
JBrowse link
G PHF8 PHD finger protein 8 involved_in ISO (PMID:20208542) UniProt PMID:20208542 NCBI chr  X:46,144,815...46,250,594
Ensembl chr  X:54,250,970...54,355,913
JBrowse link
nucleosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ANP32B acidic nuclear phosphoprotein 32 family member B involved_in ISO (PMID:20538007) UniProt PMID:20538007 NCBI chr 9:69,075,972...69,108,178
Ensembl chr 9:97,207,823...97,228,542
JBrowse link
G ASF1A anti-silencing function 1A histone chaperone acts_upstream_of_or_within ISO (PMID:11897662) MGI PMID:11897662 NCBI chr 6:116,702,314...116,717,445
Ensembl chr 6:120,843,461...120,858,471
JBrowse link
G ASF1B anti-silencing function 1B histone chaperone acts_upstream_of_or_within ISO (MGI:2675150|PMID:12842904) MGI PMID:12842904 MGI:2675150 NCBI chr19:13,685,617...13,702,367
Ensembl chr19:14,411,127...14,428,917
JBrowse link
G ATRX ATRX chromatin remodeler involved_in ISO (PMID:20651253) UniProt PMID:20651253 NCBI chr  X:66,682,968...66,969,421
Ensembl chr  X:76,795,574...77,083,486
JBrowse link
G BRD2 bromodomain containing 2 involved_in ISO (PMID:18406326) UniProt PMID:18406326 NCBI chr 6:32,538,130...32,550,823
Ensembl chr 6:33,657,648...33,666,031
JBrowse link
G DAXX death domain associated protein involved_in ISO (PMID:20504901), (PMID:20651253)
(MGI:5567907|PMID:20651253)
UniProt PMID:20504901 PMID:20651253 MGI:5567907 NCBI chr 6:32,890,846...32,895,307
Ensembl chr 6:34,004,543...34,008,717
JBrowse link
G DNAJC9 DnaJ heat shock protein family (Hsp40) member C9 involved_in ISO (PMID:33857403) UniProt PMID:33857403 NCBI chr10:69,790,478...69,796,518
Ensembl chr10:72,248,454...72,255,339
JBrowse link
G GRWD1 glutamate rich WD repeat containing 1 involved_in ISO (PMID:25990725)
(PMID:27552915)
UniProt PMID:25990725 PMID:27552915 NCBI chr19:45,447,004...45,455,976 JBrowse link
G HMGB1 high mobility group box 1 involved_in ISO (PMID:2465778) AgBase PMID:2465778 NCBI chr13:11,737,942...11,894,923
Ensembl chr13:30,174,899...30,179,527
JBrowse link
G HMGB2 high mobility group box 2 involved_in ISO (PMID:2465778) AgBase PMID:2465778 NCBI chr 4:165,559,848...165,562,625
Ensembl chr 4:177,797,457...177,800,952
JBrowse link
G LOC100970414 histone H3.3A involved_in ISO (PMID:21636898)
(PMID:25615412)
UniProt PMID:21636898 PMID:25615412 NCBI chr 1:201,523,670...201,533,005
Ensembl chr 1:206,520,109...206,529,447
JBrowse link
G LOC100974795 histone H3.1t involved_in ISO (PMID:25615412)
(PMID:20498094)
UniProt PMID:20498094 PMID:25615412 NCBI chr 1:203,826,506...203,827,872
Ensembl chr 1:209,038,009...209,038,419
JBrowse link
G LOC100979289 histone H2B type 1-A involved_in
acts_upstream_of_or_within
ISO (PMID:24699735)
(MGI:5502464|PMID:23884607)
(MGI:3702345|PMID:17261847)
UniProt
MGI
PMID:17261847 PMID:23884607 PMID:24699735 MGI:3702345 MGI:5502464 NCBI chr 6:25,561,518...25,562,817
Ensembl chr 6:25,887,397...25,887,780
JBrowse link
G LOC100981824 histone H4 involved_in ISO (PMID:20498094), (PMID:21636898), (PMID:24699735), (PMID:25615412) UniProt PMID:20498094 PMID:21636898 PMID:24699735 PMID:25615412 NCBI chr 6:26,971,978...26,975,626
Ensembl chr 6:27,634,245...27,634,556
JBrowse link
G LOC100985978 histone H3.1 involved_in ISO (PMID:25615412)
(PMID:20498094), (PMID:21636898), (PMID:24699735)
UniProt PMID:20498094 PMID:21636898 PMID:24699735 PMID:25615412 NCBI chr 6:27,642,894...27,644,248
Ensembl chr 6:26,523,132...26,523,542
JBrowse link
G LOC100988671 histone H3.3A involved_in ISO (PMID:21636898)
(PMID:25615412)
UniProt PMID:21636898 PMID:25615412 NCBI chr17:69,728,165...69,730,519
Ensembl chr17:75,277,614...75,281,106
JBrowse link
G LOC100991861 histone H3.1 involved_in ISO (PMID:20498094), (PMID:21636898), (PMID:24699735)
(PMID:25615412)
UniProt PMID:20498094 PMID:21636898 PMID:24699735 PMID:25615412 NCBI chr 6:25,865,046...25,865,544
Ensembl chr 6:26,523,132...26,523,542
JBrowse link
G LOC100992212 histone H4 involved_in ISO (PMID:20498094), (PMID:21636898), (PMID:24699735), (PMID:25615412) UniProt PMID:20498094 PMID:21636898 PMID:24699735 PMID:25615412 NCBI chr 6:25,858,656...25,860,724
Ensembl chr 6:26,513,070...26,513,381
JBrowse link
G LOC100992822 histone H2A-Bbd type 2/3 involved_in ISO (PMID:22795134) UniProt PMID:22795134 NCBI chr  X:144,364,612...144,365,333 JBrowse link
G LOC112440133 histone H2A type 1-H involved_in ISO (PMID:25615412)
(PMID:20498094), (PMID:21636898), (PMID:24699735)
UniProt PMID:20498094 PMID:21636898 PMID:24699735 PMID:25615412 NCBI chr 6:26,032,198...26,034,578
Ensembl chr 6:26,694,469...26,694,861
Ensembl chr 6:26,694,469...26,694,861
JBrowse link
G LOC112440134 histone H4 involved_in ISO (PMID:20498094), (PMID:21636898), (PMID:24699735), (PMID:25615412) UniProt PMID:20498094 PMID:21636898 PMID:24699735 PMID:25615412 NCBI chr 6:26,022,725...26,024,812 JBrowse link
G LOC117974259 histone H4 involved_in ISO (PMID:20498094), (PMID:21636898), (PMID:24699735), (PMID:25615412) UniProt PMID:20498094 PMID:21636898 PMID:24699735 PMID:25615412 NCBI chr12:14,776,653...14,777,244 JBrowse link
G LOC117975185 histone H4 involved_in ISO (PMID:20498094), (PMID:21636898), (PMID:24699735), (PMID:25615412) UniProt PMID:20498094 PMID:21636898 PMID:24699735 PMID:25615412 NCBI chr 1:125,196,600...125,205,588 JBrowse link
G LOC117977735 histone H2A-Bbd type 2/3 involved_in ISO (PMID:22795134) UniProt PMID:22795134 NCBI chr  X:144,849,954...144,850,606 JBrowse link
G LOC117980349 histone H3 involved_in ISO (PMID:21636898), (PMID:25615412) UniProt PMID:21636898 PMID:25615412 NCBI chr 1:125,196,255...125,197,305 JBrowse link
G MCM2 minichromosome maintenance complex component 2 acts_upstream_of_or_within ISO (MGI:2156014|PMID:10531422) MGI PMID:10531422 MGI:2156014 NCBI chr 3:124,643,362...124,667,121
Ensembl chr 3:131,950,887...131,974,641
JBrowse link
G NAA60 N-alpha-acetyltransferase 60, NatF catalytic subunit involved_in ISO (PMID:21981917) UniProt PMID:21981917 NCBI chr16:2,366,988...2,409,598
Ensembl chr16:3,543,418...3,586,299
JBrowse link
G NAP1L4 nucleosome assembly protein 1 like 4 involved_in ISO (PMID:9325046)
(MGI:5897488|PMID:28366643)
UniProt PMID:9325046 PMID:28366643 MGI:5897488 NCBI chr11:2,970,001...3,018,239
Ensembl chr11:2,997,726...3,044,848
JBrowse link
G NASP nuclear autoantigenic sperm protein involved_in ISO (PMID:25615412) UniProt PMID:25615412 NCBI chr 1:44,885,433...44,920,159
Ensembl chr 1:46,242,841...46,278,737
JBrowse link
G NPM1 nucleophosmin 1 involved_in ISO (PMID:11602260) UniProt PMID:11602260 NCBI chr 5:166,735,904...166,756,321
Ensembl chr 5:173,490,197...173,510,656
JBrowse link
G PADI4 peptidyl arginine deiminase 4 involved_in ISO (MGI:5545819|PMID:24463520) UniProt PMID:24463520 MGI:5545819 NCBI chr 1:16,255,680...16,311,256
Ensembl chr 1:17,311,436...17,365,426
JBrowse link
G RSF1 remodeling and spacing factor 1 involved_in ISO (PMID:12972596) UniProt PMID:12972596 NCBI chr11:72,724,124...72,885,063
Ensembl chr11:76,364,842...76,525,034
JBrowse link
G SART3 spliceosome associated factor 3, U4/U6 recycling protein involved_in ISO (PMID:24526689) UniProt PMID:24526689 NCBI chr12:106,093,738...106,132,710
Ensembl chr12:109,489,932...109,529,091
JBrowse link
G SMARCA5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 involved_in ISO (PMID:12972596) UniProt PMID:12972596 NCBI chr 4:135,874,888...135,917,096
Ensembl chr 4:147,174,060...147,214,809
JBrowse link
G SMYD3 SET and MYND domain containing 3 acts_upstream_of_or_within ISO (MGI:5500979|PMID:23752591) MGI PMID:23752591 MGI:5500979 NCBI chr 1:221,371,348...222,125,774
Ensembl chr 1:226,737,960...227,481,191
JBrowse link
G SOX9 SRY-box transcription factor 9 involved_in ISO (PMID:20484372) UniProt PMID:20484372 NCBI chr17:66,028,737...66,034,122 JBrowse link
G SPTY2D1 SPT2 chromatin protein domain containing 1 involved_in ISO (PMID:23378026) UniProt PMID:23378026 NCBI chr11:18,636,884...18,665,108
Ensembl chr11:18,321,700...18,580,419
JBrowse link
nucleosome positioning term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CTCF CCCTC-binding factor involved_in ISO (PMID:18654629) UniProt PMID:18654629 NCBI chr16:47,906,503...47,983,271
Ensembl chr16:67,302,952...67,372,041
JBrowse link
G H1-2 H1.2 linker histone, cluster member acts_upstream_of_or_within ISO (MGI:2664444|PMID:12808097) MGI PMID:12808097 MGI:2664444 NCBI chr 6:25,891,079...25,891,859
Ensembl chr 6:26,549,016...26,549,657
JBrowse link
G H1-3 H1.3 linker histone, cluster member acts_upstream_of_or_within ISO (MGI:2664444|PMID:12808097) MGI PMID:12808097 MGI:2664444 NCBI chr 6:26,068,439...26,071,115
Ensembl chr 6:26,729,239...26,729,904
JBrowse link
G H1-4 H1.4 linker histone, cluster member acts_upstream_of_or_within ISO (MGI:2664444|PMID:12808097) MGI PMID:12808097 MGI:2664444 NCBI chr 6:25,992,845...26,006,585
Ensembl chr 6:26,653,920...26,654,300
JBrowse link
G LOC100993446 histone H1.8 involved_in ISO (MGI:5559660|PMID:22868987) UniProt PMID:22868987 MGI:5559660 NCBI chr 3:126,600,616...126,609,319
Ensembl chr 3:133,952,981...133,961,243
JBrowse link
G PAF1 PAF1 homolog, Paf1/RNA polymerase II complex component involved_in ISO (PMID:22046413) CACAO PMID:22046413 NCBI chr19:36,484,099...36,489,364
Ensembl chr19:45,031,819...45,037,169
JBrowse link
G PRDM9 PR/SET domain 9 involved_in ISO (PMID:29072575) UniProt PMID:29072575 NCBI chr 5:86,847,131...86,856,802
Ensembl chr 5:92,377,523...92,395,486
JBrowse link
G RSF1 remodeling and spacing factor 1 involved_in ISO (PMID:9836642) UniProt PMID:9836642 NCBI chr11:72,724,124...72,885,063
Ensembl chr11:76,364,842...76,525,034
JBrowse link
G SMARCA5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 involved_in ISO (PMID:9836642) UniProt PMID:9836642 NCBI chr 4:135,874,888...135,917,096
Ensembl chr 4:147,174,060...147,214,809
JBrowse link
nucleotide-excision repair, DNA duplex unwinding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ERCC3 ERCC excision repair 3, TFIIH core complex helicase subunit involved_in ISO (PMID:17466626) UniProt PMID:17466626 NCBI chr2B:32,983,492...33,020,492
Ensembl chr2B:127,922,483...127,959,372
JBrowse link
pericentric heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CENPV centromere protein V involved_in ISO (PMID:18772885) UniProt PMID:18772885 NCBI chr17:35,247,664...35,258,656 JBrowse link
G DICER1 dicer 1, ribonuclease III acts_upstream_of_or_within ISO (MGI:3528782|PMID:15713842) MGI PMID:15713842 MGI:3528782 NCBI chr14:75,709,029...75,780,779
Ensembl chr14:95,036,385...95,107,940
JBrowse link
G HELLS helicase, lymphoid specific involved_in ISO (MGI:3041983|PMID:14612388) UniProt PMID:14612388 MGI:3041983 NCBI chr10:91,282,330...91,344,156
Ensembl chr10:94,790,292...94,847,209
JBrowse link
G LOC100970414 histone H3.3A acts_upstream_of_or_within ISO (MGI:5694896|PMID:26159997) MGI PMID:26159997 MGI:5694896 NCBI chr 1:201,523,670...201,533,005
Ensembl chr 1:206,520,109...206,529,447
JBrowse link
G LOC100988671 histone H3.3A acts_upstream_of_or_within ISO (MGI:5694896|PMID:26159997) MGI PMID:26159997 MGI:5694896 NCBI chr17:69,728,165...69,730,519
Ensembl chr17:75,277,614...75,281,106
JBrowse link
positive regulation of DNA helicase activity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G POT1 protection of telomeres 1 involved_in ISO (PMID:19734539) BHF-UCL PMID:19734539 NCBI chr 7:116,807,913...116,926,998
Ensembl chr 7:129,487,571...129,605,558
JBrowse link
G SSBP1 single stranded DNA binding protein 1 involved_in ISO (PMID:15167897) FlyBase PMID:15167897 NCBI chr 7:133,670,085...133,682,228
Ensembl chr 7:146,139,837...146,151,495
JBrowse link
rDNA heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BAZ2A bromodomain adjacent to zinc finger domain 2A acts_upstream_of_or_within
involved_in
ISO (MGI:3653583|PMID:16678107)
(MGI:3587127|PMID:16085498), (MGI:3852313|PMID:12198165), (MGI:3852588|PMID:19578370)
(MGI:4462332|PMID:20168299)
MGI
UniProt
PMID:12198165 PMID:16085498 PMID:16678107 PMID:19578370 PMID:20168299 MGI:3587127 MGI:3653583 MGI:3852313 MGI:3852588 MGI:4462332 NCBI chr12:32,274,240...32,313,839
Ensembl chr12:32,529,634...32,566,248
JBrowse link
G BEND3 BEN domain containing 3 involved_in ISO (PMID:26100909) UniProt PMID:26100909 NCBI chr 6:104,875,201...104,926,926
Ensembl chr 6:108,745,993...108,778,116
JBrowse link
G RRP8 ribosomal RNA processing 8 involved_in ISO (PMID:18485871) UniProt PMID:18485871 NCBI chr11:6,630,695...6,735,711
Ensembl chr11:6,415,003...6,418,414
JBrowse link
G SIRT1 sirtuin 1 involved_in ISO (PMID:18485871) UniProt PMID:18485871 NCBI chr10:64,368,878...64,401,684
Ensembl chr10:66,681,598...66,715,069
JBrowse link
G SMARCA5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 involved_in ISO (MGI:3587127|PMID:16085498) UniProt PMID:16085498 MGI:3587127 NCBI chr 4:135,874,888...135,917,096
Ensembl chr 4:147,174,060...147,214,809
JBrowse link
G SUV39H1 SUV39H1 histone lysine methyltransferase involved_in ISO (PMID:18485871) UniProt PMID:18485871 NCBI chr  X:40,993,911...41,007,362
Ensembl chr  X:48,855,494...48,868,131
JBrowse link
G UBTF upstream binding transcription factor acts_upstream_of_or_within ISO (MGI:3836497|PMID:19103806) MGI PMID:19103806 MGI:3836497 NCBI chr17:13,176,228...13,191,283
Ensembl chr17:13,343,349...13,356,836
JBrowse link
regulation of chromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PARP10 poly(ADP-ribose) polymerase family member 10 involved_in ISO (PMID:15674325) UniProt PMID:15674325 NCBI chr 8:140,743,061...140,744,014
Ensembl chr 8:143,735,819...143,744,138
JBrowse link
G SPTY2D1 SPT2 chromatin protein domain containing 1 involved_in ISO (PMID:26109053) UniProt PMID:26109053 NCBI chr11:18,636,884...18,665,108
Ensembl chr11:18,321,700...18,580,419
JBrowse link
regulation of chromosome condensation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CCNB1 cyclin B1 ISO positive regulation RGD PMID:15291744 RGD:1578405 NCBI chr 5:44,826,103...44,836,832
Ensembl chr 5:46,394,362...46,405,332
JBrowse link
G MCPH1 microcephalin 1 acts_upstream_of_or_within ISO (MGI:4437500|PMID:20169082) MGI PMID:20169082 MGI:4437500 NCBI chr 8:624,877...877,839
Ensembl chr 8:6,409,072...6,646,394
JBrowse link
G WAPL WAPL cohesin release factor acts_upstream_of_or_within ISO (MGI:5544860|PMID:23975099) MGI PMID:23975099 MGI:5544860 NCBI chr10:82,862,852...82,953,284
Ensembl chr10:86,422,170...86,512,207
JBrowse link
regulation of DNA helicase activity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G POT1 protection of telomeres 1 involved_in ISO (PMID:19734539) BHF-UCL PMID:19734539 NCBI chr 7:116,807,913...116,926,998
Ensembl chr 7:129,487,571...129,605,558
JBrowse link
regulation of ribosomal DNA heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LOC100974858 core histone macro-H2A.1 NOT|involved_in ISO (PMID:24071584) UniProt PMID:24071584 NCBI chr 5:130,727,065...130,791,932
Ensembl chr 5:136,868,521...136,933,834
JBrowse link
sperm chromatin condensation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FSHR follicle stimulating hormone receptor acts_upstream_of_or_within ISO (MGI:1855818|PMID:10775161) MGI PMID:10775161 MGI:1855818 NCBI chr2A:49,088,450...49,287,688
Ensembl chr2A:50,008,328...50,207,258
JBrowse link
G LOC100987154 testis-specific H1 histone involved_in ISO (MGI:3531623|PMID:15710904) UniProt PMID:15710904 MGI:3531623 NCBI chr12:40,402,590...40,406,005
Ensembl chr12:41,281,177...41,281,944
JBrowse link
G SELENOF selenoprotein F ISO RGD PMID:11344099 RGD:728803 NCBI chr 1:119,382,707...119,432,277
Ensembl chr 1:88,234,383...88,282,944
JBrowse link
G SYCP1 synaptonemal complex protein 1 acts_upstream_of_or_within ISO (MGI:5315075|PMID:22164254) MGI PMID:22164254 MGI:5315075 NCBI chr 1:87,565,888...87,701,530
Ensembl chr 1:122,614,520...122,754,137
JBrowse link
G SYCP3 synaptonemal complex protein 3 acts_upstream_of_or_within ISO (MGI:5315075|PMID:22164254) MGI PMID:22164254 MGI:5315075 NCBI chr12:99,311,260...99,322,007
Ensembl chr12:102,711,837...102,720,728
JBrowse link
G TSSK6 testis specific serine kinase 6 involved_in ISO (MGI:3580211|PMID:15870294) UniProt PMID:15870294 MGI:3580211 NCBI chr19:18,952,643...18,954,101
Ensembl chr19:19,950,614...19,951,435
JBrowse link
spermatogenesis, exchange of chromosomal proteins term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CHD5 chromodomain helicase DNA binding protein 5 involved_in ISO (MGI:5559810|PMID:24252660) UniProt PMID:24252660 MGI:5559810 NCBI chr 1:4,867,636...4,947,401
Ensembl chr 1:6,125,525...6,191,991
JBrowse link
G FSHR follicle stimulating hormone receptor acts_upstream_of_or_within ISO (MGI:2682484|PMID:14680821) MGI PMID:14680821 MGI:2682484 NCBI chr2A:49,088,450...49,287,688
Ensembl chr2A:50,008,328...50,207,258
JBrowse link
G LOC100979289 histone H2B type 1-A involved_in ISO (MGI:5502464|PMID:23884607) UniProt PMID:23884607 MGI:5502464 NCBI chr 6:25,561,518...25,562,817
Ensembl chr 6:25,887,397...25,887,780
JBrowse link
G PIWIL1 piwi like RNA-mediated gene silencing 1 involved_in ISO (MGI:5905675|PMID:28552346) UniProt PMID:28552346 MGI:5905675 NCBI chr12:127,951,178...127,986,173
Ensembl chr12:132,169,820...132,199,374
JBrowse link
G PSME4 proteasome activator subunit 4 involved_in ISO (MGI:5494329|PMID:23706739) UniProt PMID:23706739 MGI:5494329 NCBI chr2A:54,007,224...54,113,557
Ensembl chr2A:54,919,094...55,024,551
JBrowse link
G RNF8 ring finger protein 8 involved_in ISO (MGI:5905675|PMID:28552346) UniProt PMID:28552346 MGI:5905675 NCBI chr 6:36,918,705...36,955,380
Ensembl chr 6:38,108,414...38,145,949
JBrowse link
G SYCP3 synaptonemal complex protein 3 involved_in ISO (PMID:14643120) UniProt PMID:14643120 NCBI chr12:99,311,260...99,322,007
Ensembl chr12:102,711,837...102,720,728
JBrowse link
G TNP1 transition protein 1 involved_in ISO (MGI:3041389|PMID:15083521), (MGI:3056208|PMID:15189834), (MGI:3620321|PMID:15163613), (MGI:5897488|PMID:28366643) UniProt PMID:15083521 PMID:15163613 PMID:15189834 PMID:28366643 MGI:3041389 MGI:3056208 MGI:3620321 MGI:5897488 NCBI chr2B:104,122,748...104,123,349
Ensembl chr2B:222,723,606...222,724,212
JBrowse link
G TNP2 transition protein 2 involved_in ISO (MGI:3041389|PMID:15083521), (MGI:3056208|PMID:15189834), (MGI:3620321|PMID:15163613), (MGI:5897488|PMID:28366643) UniProt PMID:15083521 PMID:15163613 PMID:15189834 PMID:28366643 MGI:3041389 MGI:3056208 MGI:3620321 MGI:5897488 NCBI chr16:10,209,801...10,211,466
Ensembl chr16:11,431,822...11,433,087
JBrowse link

Term paths to the root
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  biological_process 12659
    cellular process 11795
      cellular component organization or biogenesis 4933
        cellular component organization 4849
          organelle organization 2889
            chromosome organization 611
              DNA conformation change 139
                DNA geometric change + 31
                DNA packaging + 106
                DNA topological change 6
paths to the root