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ONTOLOGY REPORT - ANNOTATIONS

Term:histone mRNA catabolic process
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Accession:GO:0071044 term browser browse the term
Definition:The chemical reactions and pathways resulting in the breakdown of histone messenger RNA (mRNA).


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histone mRNA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atm ataxia telangiectasia mutated involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr 9:53,348,422...53,448,125
Ensembl chr 9:53,350,449...53,448,040 		JBrowse link
G Dcp2 decapping mRNA 2 involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr18:44,513,567...44,558,036
Ensembl chr18:44,513,569...44,558,036 		JBrowse link
G Eri1 exoribonuclease 1 NOT|involved_in ISO (PMID:18172165) UniProt PMID:18172165 NCBI chr 8:35,932,419...35,962,687
Ensembl chr 8:35,932,407...35,963,350 		JBrowse link
G Exosc10 exosome component 10 involved_in ISO
IBA		 MGI
GO_Central		 GO_REF:0000033 GO_REF:0000119 MGI:4834177 NCBI chr 4:148,642,870...148,666,854
Ensembl chr 4:148,642,886...148,666,858 		JBrowse link
G Exosc4 exosome component 4 involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr15:76,211,597...76,214,870
Ensembl chr15:76,211,597...76,214,877 		JBrowse link
G Lsm1 LSM1 homolog, mRNA degradation associated involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr 8:26,275,326...26,294,003
Ensembl chr 8:26,275,316...26,294,003 		JBrowse link
G Mtpap mitochondrial poly(A) polymerase involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr18:4,375,573...4,399,888
Ensembl chr18:4,375,592...4,397,330 		JBrowse link
G Tent2 terminal nucleotidyltransferase 2 involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr13:93,282,363...93,330,662
Ensembl chr13:93,282,790...93,328,893 		JBrowse link
G Tent4b terminal nucleotidyltransferase 4B involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr 8:88,925,229...88,989,942
Ensembl chr 8:88,925,841...88,986,350 		JBrowse link
G Tut1 terminal uridylyl transferase 1, U6 snRNA-specific NOT|involved_in ISO (PMID:18172165) UniProt PMID:18172165 NCBI chr19:8,931,199...8,943,572
Ensembl chr19:8,931,211...8,943,574 		JBrowse link
G Tut4 terminal uridylyl transferase 4 NOT|involved_in ISO (PMID:18172165) UniProt PMID:18172165 NCBI chr 4:108,316,607...108,416,612
Ensembl chr 4:108,316,623...108,416,618 		JBrowse link
G Tut7 terminal uridylyl transferase 7 NOT|involved_in ISO (PMID:18172165) UniProt PMID:18172165 NCBI chr13:59,919,690...59,971,060
Ensembl chr13:59,919,375...59,970,961 		JBrowse link
G Upf1 UPF1 RNA helicase and ATPase involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr 8:70,784,143...70,806,418
Ensembl chr 8:70,784,175...70,805,928 		JBrowse link
G Xrn1 5'-3' exoribonuclease 1 involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr 9:95,836,803...95,939,859
Ensembl chr 9:95,836,813...95,939,856 		JBrowse link
nuclear histone mRNA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ssb small RNA binding exonuclease protection factor La involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr 2:69,691,963...69,702,185
Ensembl chr 2:69,691,906...69,702,190 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 28573
    metabolic process 11001
      organic substance metabolic process 10573
        macromolecule metabolic process 8853
          macromolecule catabolic process 1557
            RNA catabolic process 407
              mRNA catabolic process 354
                nuclear-transcribed mRNA catabolic process 130
                  histone mRNA catabolic process 15
                    nuclear histone mRNA catabolic process 1
Path 2
Term Annotations click to browse term
  biological_process 28573
    biological regulation 13118
      regulation of biological process 12727
        regulation of metabolic process 6597
          regulation of biosynthetic process 5426
            regulation of cellular biosynthetic process 5336
              regulation of macromolecule biosynthetic process 5219
                regulation of gene expression 5099
                  negative regulation of gene expression 1491
                    mRNA catabolic process 354
                      nuclear-transcribed mRNA catabolic process 130
                        histone mRNA catabolic process 15
                          nuclear histone mRNA catabolic process 1
paths to the root