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ONTOLOGY REPORT - ANNOTATIONS


Term:nuclear RNA surveillance
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Accession:GO:0071027 term browser browse the term
Definition:A process that identifies and degrades defective or aberrant RNAs within the nucleus.
Synonyms:exact_synonym: nuclear RNA quality control;   nuclear aberrant RNA catabolic process
 only_in_taxon: NCBITaxon:2759 ! Eukaryota



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nuclear RNA surveillance term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Wdr82 WD repeat domain 82 involved_in ISO (PMID:33913806)
(PMID:33767452)
RGD PMID:33767452 PMID:33913806 NCBI chr 8:106,814,569...106,834,535 JBrowse link
G Zc3h4 zinc finger CCCH-type containing 4 involved_in ISO (PMID:33913806)
(PMID:33767452)
RGD PMID:33767452 PMID:33913806 NCBI chr 1:77,106,309...77,143,827 JBrowse link
nuclear mRNA surveillance term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dxo decapping exoribonuclease involved_in ISS
ISO
GO_REF:0000024
(PMID:23523372)
UniProt
RGD
PMID:23523372 GO_REF:0000024 NCBI chr20:3,993,322...3,995,484 JBrowse link
G Exosc10 exosome component 10 involved_in ISO (PMID:17545563), (PMID:20699273) RGD PMID:17545563 PMID:20699273 NCBI chr 5:164,278,414...164,302,067 JBrowse link
G Exosc4 exosome component 4 involved_in ISO
IBA
(PMID:17545563)
GO_REF:0000033
RGD
GO_Central
PMID:17545563 GO_REF:0000033 NCBI chr 7:109,928,491...109,931,233 JBrowse link
G Exosc5 exosome component 5 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:90,295,495...90,305,047 JBrowse link
G Exosc6 exosome component 6 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr19:39,022,171...39,023,585 JBrowse link
G Exosc7 exosome component 7 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 8:122,773,607...122,798,943 JBrowse link
G Exosc8 exosome component 8 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 2:138,930,405...138,937,009 JBrowse link
G Exosc9 exosome component 9 involved_in ISO
IBA
(PMID:17545563)
GO_REF:0000033
RGD
GO_Central
PMID:17545563 GO_REF:0000033 NCBI chr 2:121,344,154...121,355,110 JBrowse link
G Xrn1 5'-3' exoribonuclease 1 involved_in ISO (PMID:17545563) RGD PMID:17545563 NCBI chr 8:96,527,871...96,637,385 JBrowse link
nuclear mRNA surveillance of mRNA 3'-end processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dis3 DIS3 homolog, exosome endoribonuclease and 3'-5' exoribonuclease involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr15:82,231,922...82,258,299 JBrowse link
G Zcchc7 zinc finger CCHC-type containing 7 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 5:58,992,558...59,173,308 JBrowse link
nuclear polyadenylation-dependent antisense transcript catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Exosc10 exosome component 10 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 5:164,278,414...164,302,067 JBrowse link
nuclear polyadenylation-dependent CUT catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Exosc10 exosome component 10 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 5:164,278,414...164,302,067 JBrowse link
G Zcchc7 zinc finger CCHC-type containing 7 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 5:58,992,558...59,173,308 JBrowse link
nuclear polyadenylation-dependent rRNA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Exosc10 exosome component 10 involved_in ISO
IBA
(PMID:16455498)
GO_REF:0000033
RGD
GO_Central
PMID:16455498 GO_REF:0000033 NCBI chr 5:164,278,414...164,302,067 JBrowse link
G Exosc2 exosome component 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 3:14,962,930...14,973,645 JBrowse link
G Exosc3 exosome component 3 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 5:64,369,495...64,374,711 JBrowse link
G Exosc7 exosome component 7 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 8:122,773,607...122,798,943 JBrowse link
G Exosc8 exosome component 8 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 2:138,930,405...138,937,009 JBrowse link
G Exosc9 exosome component 9 involved_in ISO
IBA
(PMID:16455498)
GO_REF:0000033
RGD
GO_Central
PMID:16455498 GO_REF:0000033 NCBI chr 2:121,344,154...121,355,110 JBrowse link
G Zcchc7 zinc finger CCHC-type containing 7 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 5:58,992,558...59,173,308 JBrowse link
nuclear polyadenylation-dependent snoRNA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Exosc10 exosome component 10 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 5:164,278,414...164,302,067 JBrowse link
G Zcchc7 zinc finger CCHC-type containing 7 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 5:58,992,558...59,173,308 JBrowse link
nuclear polyadenylation-dependent snRNA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Exosc10 exosome component 10 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 5:164,278,414...164,302,067 JBrowse link
G Zcchc7 zinc finger CCHC-type containing 7 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 5:58,992,558...59,173,308 JBrowse link
TRAMP-dependent tRNA surveillance pathway term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Exosc10 exosome component 10 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 5:164,278,414...164,302,067 JBrowse link
G Exosc2 exosome component 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 3:14,962,930...14,973,645 JBrowse link
G Exosc3 exosome component 3 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 5:64,369,495...64,374,711 JBrowse link
G Exosc7 exosome component 7 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 8:122,773,607...122,798,943 JBrowse link
G Exosc8 exosome component 8 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 2:138,930,405...138,937,009 JBrowse link
G Exosc9 exosome component 9 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 2:121,344,154...121,355,110 JBrowse link
G Zcchc7 zinc finger CCHC-type containing 7 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 5:58,992,558...59,173,308 JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20534
    cellular process 19523
      metabolic process 12157
        macromolecule metabolic process 9981
          macromolecule catabolic process 1678
            nucleic acid catabolic process 421
              RNA catabolic process 391
                RNA surveillance 18
                  nuclear RNA surveillance 15
                    TRAMP-dependent tRNA surveillance pathway 7
                    antisense RNA transcript catabolic process + 1
                    nuclear lncRNA surveillance 0
                    nuclear mRNA surveillance + 11
                    nuclear polyadenylation-dependent CUT catabolic process 2
                    nuclear polyadenylation-dependent ncRNA catabolic process 0
                    nuclear polyadenylation-dependent rRNA catabolic process 7
                    nuclear polyadenylation-dependent snRNA catabolic process 2
                    nuclear polyadenylation-dependent snoRNA catabolic process 2
Path 2
Term Annotations click to browse term
  biological_process 20534
    cellular process 19523
      metabolic process 12157
        primary metabolic process 10741
          nucleobase-containing compound metabolic process 5945
            nucleic acid metabolic process 5329
              nucleic acid catabolic process 421
                RNA catabolic process 391
                  RNA surveillance 18
                    nuclear RNA surveillance 15
                      TRAMP-dependent tRNA surveillance pathway 7
                      antisense RNA transcript catabolic process + 1
                      nuclear lncRNA surveillance 0
                      nuclear mRNA surveillance + 11
                      nuclear polyadenylation-dependent CUT catabolic process 2
                      nuclear polyadenylation-dependent ncRNA catabolic process 0
                      nuclear polyadenylation-dependent rRNA catabolic process 7
                      nuclear polyadenylation-dependent snRNA catabolic process 2
                      nuclear polyadenylation-dependent snoRNA catabolic process 2
paths to the root