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ONTOLOGY REPORT - ANNOTATIONS


Term:catalytic step 2 spliceosome
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Accession:GO:0071013 term browser browse the term
Definition:A spliceosomal complex that contains three snRNPs, including U5, bound to a splicing intermediate in which the first catalytic cleavage of the 5' splice site has occurred. The precise subunit composition differs significantly from that of the catalytic step 1, or activated, spliceosome, and includes many proteins in addition to those found in the associated snRNPs.
Synonyms:narrow_synonym: mammalian spliceosomal complex C;   mammalian spliceosomal complex C1;   yeast spliceosomal complex A2-2


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catalytic step 2 spliceosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07008904.1 part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537
G AABR07042226.1 part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr  X:144,806,986...144,812,552 JBrowse link
G AC126899.1 part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr19:40,146,975...40,147,500 JBrowse link
G Alyref Aly/REF export factor part_of ISO (PMID:11991638) RGD PMID:11991638 NCBI chr10:105,871,306...105,875,076
Ensembl chr10:105,871,306...105,875,069
JBrowse link
G Aqr aquarius intron-binding spliceosomal factor part_of ISO
IBA
(PMID:11991638)
PMID:21873635
RGD PMID:11991638 PMID:21873635 RGD:13792537 NCBI chr 3:100,874,987...100,945,026
Ensembl chr 3:100,874,987...100,945,044
JBrowse link
G Bcas2 BCAS2, pre-mRNA processing factor part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:190,692,503...190,700,386
Ensembl chr 2:190,692,461...190,700,389
JBrowse link
G Cactin cactin, spliceosome C complex subunit part_of ISO (PMID:11991638) RGD PMID:11991638 NCBI chr 7:8,391,396...8,397,219
Ensembl chr 7:8,391,397...8,396,829
JBrowse link
G Cdc40 cell division cycle 40 part_of IBA
ISO
PMID:21873635
(PMID:11991638)
RGD PMID:11991638 PMID:21873635 RGD:13792537 NCBI chr20:44,273,080...44,325,610
Ensembl chr20:44,273,089...44,325,358
JBrowse link
G Cdc5l cell division cycle 5-like part_of ISO (PMID:11991638) RGD PMID:11991638 NCBI chr 9:15,564,949...15,603,453
Ensembl chr 9:15,564,767...15,603,450
JBrowse link
G Crnkl1 crooked neck pre-mRNA splicing factor 1 part_of ISO (PMID:11991638) RGD PMID:11991638 NCBI chr 3:133,338,593...133,354,329
Ensembl chr 6:1,140,615...1,142,918
Ensembl chr 3:1,140,615...1,142,918
JBrowse link
G Cwc15 CWC15 spliceosome-associated protein part_of ISO
IBA
(PMID:11991638)
PMID:21873635
RGD PMID:11991638 PMID:21873635 RGD:13792537 NCBI chr 8:11,305,401...11,316,326
Ensembl chr 8:11,305,424...11,316,325
JBrowse link
G Cwc22 CWC22 spliceosome associated protein homolog part_of IBA
ISO
PMID:21873635
(PMID:11991638), (PMID:22961380)
RGD PMID:11991638 PMID:22961380 PMID:21873635 RGD:13792537 NCBI chr 3:62,815,230...62,864,269
Ensembl chr 3:62,802,045...62,864,228
JBrowse link
G Cwc27 CWC27 spliceosome associated cyclophilin part_of ISO (PMID:11991638) RGD PMID:11991638 NCBI chr 2:35,764,674...35,975,908
Ensembl chr 2:35,764,686...35,975,872
JBrowse link
G Ddx23 DEAD-box helicase 23 part_of ISO
IBA
(PMID:11991638)
PMID:21873635
RGD PMID:11991638 PMID:21873635 RGD:13792537 NCBI chr 7:129,797,620...129,814,909
Ensembl chr 7:129,797,614...129,814,949
JBrowse link
G Ddx41 DEAD-box helicase 41 part_of ISO (PMID:11991638) RGD PMID:11991638 NCBI chr17:9,102,926...9,108,415
Ensembl chr17:9,103,010...9,108,415
JBrowse link
G Ddx5 DEAD-box helicase 5 part_of ISO (PMID:11991638) RGD PMID:11991638 NCBI chr10:91,723,508...91,732,210
Ensembl chr10:91,723,508...91,732,283
JBrowse link
G Dhx35 DEAH-box helicase 35 part_of IBA
ISO
PMID:21873635
(PMID:11991638)
RGD PMID:11991638 PMID:21873635 RGD:13792537 NCBI chr 3:147,450,163...147,507,473
Ensembl chr 3:147,450,163...147,507,451
JBrowse link
G Dhx38 DEAH-box helicase 38 part_of ISO (PMID:11991638) RGD PMID:11991638 NCBI chr19:37,512,891...37,530,140
Ensembl chr19:37,512,891...37,530,140
JBrowse link
G Dhx8 DEAH-box helicase 8 part_of IBA
ISO
PMID:21873635
(PMID:11991638)
RGD PMID:11991638 PMID:21873635 RGD:13792537 NCBI chr10:86,667,641...86,705,454
Ensembl chr10:86,667,834...86,705,137
JBrowse link
G Eftud2 elongation factor Tu GTP binding domain containing 2 part_of ISO (PMID:11991638) RGD PMID:11991638 NCBI chr10:87,804,893...87,852,181
Ensembl chr10:87,804,892...87,846,079
JBrowse link
G Eif4a3 eukaryotic translation initiation factor 4A3 part_of IBA
ISO
PMID:21873635
(PMID:11991638), (PMID:22961380)
RGD PMID:11991638 PMID:22961380 PMID:21873635 RGD:13792537 NCBI chr10:104,549,038...104,559,032
Ensembl chr10:104,549,038...104,559,057
JBrowse link
G Ess2 ess-2 splicing factor homolog part_of ISO
IBA
(PMID:11991638)
PMID:21873635
RGD PMID:11991638 PMID:21873635 RGD:13792537 NCBI chr11:83,075,893...83,085,849
Ensembl chr11:83,075,925...83,084,846
JBrowse link
G Frg1 FSHD region gene 1 part_of ISO
IBA
(PMID:11991638)
PMID:21873635
RGD PMID:11991638 PMID:21873635 RGD:13792537 NCBI chr16:50,925,783...50,946,661
Ensembl chr16:50,925,803...50,946,661
JBrowse link
G Gpatch1 G patch domain containing 1 part_of ISO (PMID:11991638) RGD PMID:11991638 NCBI chr 1:87,925,606...87,974,544
Ensembl chr 1:87,925,618...87,974,544
JBrowse link
G Hnrnpa1 heterogeneous nuclear ribonucleoprotein A1 part_of ISO (PMID:11991638) RGD PMID:11991638 NCBI chr 7:134,375,318...134,381,610
Ensembl chr 7:134,375,150...134,381,609
JBrowse link
G Hnrnpa2b1 heterogeneous nuclear ribonucleoprotein A2/B1 part_of ISO (PMID:11991638) RGD PMID:11991638 NCBI chr 4:80,534,659...80,545,297
Ensembl chr 4:80,534,651...80,545,249
JBrowse link
G Hnrnpa3 heterogeneous nuclear ribonucleoprotein A3 part_of ISO (PMID:11991638) RGD PMID:11991638 NCBI chr 3:60,578,574...60,588,755
Ensembl chr 3:60,578,673...60,588,306
JBrowse link
G Hnrnpc heterogeneous nuclear ribonucleoprotein C part_of ISO (PMID:11991638) RGD PMID:11991638 NCBI chr15:24,779,593...24,809,213
Ensembl chr15:24,779,450...24,809,183
JBrowse link
G Hnrnpf heterogeneous nuclear ribonucleoprotein F part_of ISO (PMID:11991638) RGD PMID:11991638 NCBI chr 4:151,083,262...151,104,464
Ensembl chr 4:151,083,062...151,109,038
JBrowse link
G Hnrnph1 heterogeneous nuclear ribonucleoprotein H1 part_of ISO
IEA
(PMID:11991638)
GO_REF:0000107
RGD
Ensembl
PMID:11991638 GO_REF:0000107 NCBI chr10:34,692,868...34,702,849
Ensembl chr10:34,693,555...34,702,846
JBrowse link
G Hnrnpk heterogeneous nuclear ribonucleoprotein K part_of ISO
IEA
(PMID:11991638)
GO_REF:0000107
RGD
Ensembl
PMID:11991638 GO_REF:0000107 NCBI chr17:6,262,936...6,275,001
Ensembl chr17:6,262,998...6,274,997
JBrowse link
G Hnrnpm heterogeneous nuclear ribonucleoprotein M part_of IEA
ISO
GO_REF:0000107
(PMID:11991638)
Ensembl
RGD
PMID:11991638 GO_REF:0000107 NCBI chr 7:14,438,703...14,476,781
Ensembl chr 7:14,438,688...14,476,762
JBrowse link
G Hnrnpr heterogeneous nuclear ribonucleoprotein R part_of ISO (PMID:11991638) RGD PMID:11991638 NCBI chr 5:148,542,999...148,574,888
Ensembl chr 5:148,543,044...148,574,867
JBrowse link
G Hnrnpu heterogeneous nuclear ribonucleoprotein U part_of IBA
IEA
ISO
PMID:21873635
GO_REF:0000107
(PMID:11991638)
Ensembl
RGD
PMID:11991638 PMID:21873635 GO_REF:0000107, RGD:13792537 NCBI chr13:90,069,058...90,086,905
Ensembl chr13:90,074,181...90,086,588
JBrowse link
G Isy1 ISY1 splicing factor homolog part_of IBA
ISO
PMID:21873635
(PMID:11991638)
RGD PMID:11991638 PMID:21873635 RGD:13792537 NCBI chr 4:120,276,535...120,297,227
Ensembl chr 4:120,276,292...120,297,188
JBrowse link
G LOC310177 similar to RIKEN cDNA 0610040D20 part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:76,016,636...76,017,401
Ensembl chr 2:76,016,684...76,017,358
JBrowse link
G LOC500684 hypothetical protein LOC500684 part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:67,152,834...67,154,825 JBrowse link
G LOC687679 similar to small nuclear ribonucleoprotein polypeptide G part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:87,982,659...87,983,067
Ensembl chr 1:87,982,626...87,983,118
JBrowse link
G Lsm2 LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated part_of IBA
ISO
PMID:21873635
(PMID:11991638)
RGD PMID:11991638 PMID:21873635 RGD:13792537 NCBI chr20:3,843,467...3,847,217
Ensembl chr20:3,843,466...3,847,266
JBrowse link
G Lsm3 LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated part_of IBA
ISO
PMID:21873635
(PMID:11991638)
RGD PMID:11991638 PMID:21873635 RGD:13792537 NCBI chr 4:124,021,023...124,027,269
Ensembl chr 4:124,021,023...124,027,269
JBrowse link
G Lsm7 LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:8,856,666...8,859,119
Ensembl chr 7:8,856,489...8,859,119
JBrowse link
G Magoh mago homolog, exon junction complex subunit part_of IBA
ISO
PMID:21873635
(PMID:11991638)
RGD PMID:11991638 PMID:21873635 RGD:13792537 NCBI chr 5:122,639,268...122,646,650
Ensembl chr 5:122,639,308...122,646,617
JBrowse link
G Magohb mago homolog B, exon junction complex subunit part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:165,034,131...165,041,977
Ensembl chr 4:165,034,122...165,041,967
JBrowse link
G Mtrex Mtr4 exosome RNA helicase part_of ISO (PMID:11991638) RGD PMID:11991638 NCBI chr 2:44,500,326...44,560,624
Ensembl chr 2:44,461,444...44,560,627
JBrowse link
G Pabpc1 poly(A) binding protein, cytoplasmic 1 part_of ISO (PMID:11991638) RGD PMID:11991638 NCBI chr 7:67,777,438...67,789,731
Ensembl chr 7:67,777,381...67,789,744
JBrowse link
G Plrg1 pleiotropic regulator 1 part_of IBA
ISO
PMID:21873635
(PMID:11991638)
RGD PMID:11991638 PMID:21873635 RGD:13792537 NCBI chr 2:168,408,139...168,424,470
Ensembl chr 2:168,408,124...168,424,522
JBrowse link
G Pnn pinin, desmosome associated protein part_of IBA
ISO
PMID:21873635
(PMID:11991638)
RGD PMID:11991638 PMID:21873635 RGD:13792537 NCBI chr 6:76,758,138...76,766,451
Ensembl chr 6:76,758,117...76,766,889
JBrowse link
G Ppie peptidylprolyl isomerase E part_of ISO (PMID:11991638) RGD PMID:11991638 NCBI chr 5:135,406,177...135,419,511
Ensembl chr 5:135,406,176...135,419,235
JBrowse link
G Ppil1 peptidylprolyl isomerase like 1 part_of ISO (PMID:11991638) RGD PMID:11991638 NCBI chr20:7,302,292...7,322,349
Ensembl chr20:7,302,621...7,322,354
JBrowse link
G Ppil3 peptidylprolyl isomerase like 3 part_of ISO (PMID:11991638) RGD PMID:11991638 NCBI chr 9:59,966,405...59,980,147
Ensembl chr 9:59,964,919...59,979,886
JBrowse link
G Ppwd1 peptidylprolyl isomerase domain and WD repeat containing 1 part_of ISO (PMID:11991638) RGD PMID:11991638 NCBI chr 2:35,337,301...35,360,661
Ensembl chr 2:35,335,962...35,360,460
JBrowse link
G Prpf19 pre-mRNA processing factor 19 part_of ISO
IBA
(PMID:11991638)
PMID:21873635
RGD PMID:11991638 PMID:21873635 RGD:13792537 NCBI chr 1:207,541,582...207,552,664
Ensembl chr 1:207,541,595...207,552,662
JBrowse link
G Prpf4b pre-mRNA processing factor 4B part_of ISO (PMID:11991638) RGD PMID:11991638 NCBI chr17:29,985,343...30,020,285
Ensembl chr17:29,985,343...30,019,625
JBrowse link
G Prpf6 pre-mRNA processing factor 6 part_of IBA
ISO
PMID:21873635
(PMID:11991638)
RGD PMID:11991638 PMID:21873635 RGD:13792537 NCBI chr 3:168,706,952...168,771,191
Ensembl chr 3:168,704,299...168,774,991
JBrowse link
G Prpf8 pre-mRNA processing factor 8 part_of IBA
ISO
PMID:21873635
(PMID:11991638)
RGD PMID:11991638 PMID:21873635 RGD:13792537 NCBI chr10:60,331,494...60,354,606
Ensembl chr10:60,331,494...60,354,606
JBrowse link
G Raly RALY heterogeneous nuclear ribonucleoprotein part_of ISO (PMID:11991638) RGD PMID:11991638 NCBI chr 3:143,306,039...143,370,542
Ensembl chr 3:143,306,300...143,370,539
JBrowse link
G Rbm22 RNA binding motif protein 22 part_of ISO (PMID:11991638) RGD PMID:11991638 NCBI chr18:54,013,374...54,024,182
Ensembl chr18:54,013,351...54,024,569
JBrowse link
G Rbm8a RNA binding motif protein 8A part_of ISO (PMID:11991638) RGD PMID:11991638 NCBI chr 2:184,165,189...184,167,959
Ensembl chr 2:184,165,193...184,167,959
JBrowse link
G Rbmx RNA binding motif protein, X-linked part_of ISO (PMID:11991638) RGD PMID:11991638 NCBI chr  X:135,305,237...135,314,806
Ensembl chr  X:135,305,325...135,314,743
JBrowse link
G Rbmxl1 RBMX like 1 part_of ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr19:29,407,902...29,411,519
Ensembl chr19:29,407,912...29,412,859
JBrowse link
G Sart1 spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP part_of ISO (PMID:11991638) RGD PMID:11991638 NCBI chr 1:202,690,472...202,699,136
Ensembl chr 1:202,690,459...202,699,136
JBrowse link
G Sf3a1 splicing factor 3a, subunit 1 part_of ISO
IBA
(PMID:11991638)
PMID:21873635
RGD PMID:11991638 PMID:21873635 RGD:13792537 NCBI chr14:79,031,394...79,052,144
Ensembl chr14:79,031,394...79,052,144
JBrowse link
G Sf3a2 splicing factor 3a, subunit 2 part_of ISO
IBA
(PMID:11991638)
PMID:21873635
RGD PMID:11991638 PMID:21873635 RGD:13792537 NCBI chr 7:8,909,507...8,916,104
Ensembl chr 7:8,909,507...8,915,530
JBrowse link
G Sf3a3 splicing factor 3a, subunit 3 part_of ISO (PMID:11991638) RGD PMID:11991638 NCBI chr 5:136,967,713...136,987,345
Ensembl chr 5:136,967,691...136,987,361
JBrowse link
G Sf3b1 splicing factor 3b, subunit 1 part_of ISO
IBA
(PMID:11991638)
PMID:21873635
RGD PMID:11991638 PMID:21873635 RGD:13792537 NCBI chr 9:56,492,403...56,532,300
Ensembl chr 9:56,492,403...56,532,300
JBrowse link
G Sf3b2 splicing factor 3b, subunit 2 part_of ISO
IBA
(PMID:11991638)
PMID:21873635
RGD PMID:11991638 PMID:21873635 RGD:13792537 NCBI chr 1:202,570,423...202,590,774
Ensembl chr 1:202,570,423...202,590,759
JBrowse link
G Sf3b3 splicing factor 3b, subunit 3 part_of ISO (PMID:11991638) RGD PMID:11991638 NCBI chr19:38,782,749...38,820,271
Ensembl chr19:38,783,040...38,820,245
JBrowse link
G Sf3b6 splicing factor 3B, subunit 6 part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:27,826,044...27,835,086
Ensembl chr 6:27,826,029...27,835,156
JBrowse link
G Slu7 SLU7 homolog, splicing factor part_of ISO (PMID:11991638) RGD PMID:11991638 NCBI chr10:27,908,325...27,923,784
Ensembl chr10:27,908,396...27,923,349
JBrowse link
G Snrnp200 small nuclear ribonucleoprotein U5 subunit 200 part_of ISO
IEA
(PMID:11991638)
GO_REF:0000107
RGD
Ensembl
PMID:11991638 GO_REF:0000107 NCBI chr 3:114,428,854...114,458,194
Ensembl chr 3:114,428,854...114,458,182
JBrowse link
G Snrnp40 small nuclear ribonucleoprotein U5 subunit 40 part_of ISO (PMID:11991638) RGD PMID:11991638 NCBI chr 5:142,700,632...142,733,776
Ensembl chr 5:142,700,534...142,733,776
JBrowse link
G Snrpa1 small nuclear ribonucleoprotein polypeptide A' part_of ISO (PMID:11991638) RGD PMID:11991638 NCBI chr 1:119,641,402...119,654,653
Ensembl chr 1:119,638,481...119,654,653
JBrowse link
G Snrpb small nuclear ribonucleoprotein polypeptides B and B1 part_of IBA
ISO
PMID:21873635
(PMID:11991638)
RGD PMID:11991638 PMID:21873635 RGD:13792537 NCBI chr 3:117,369,816...117,379,344
Ensembl chr 3:117,370,100...117,379,339
JBrowse link
G Snrpb2 small nuclear ribonucleoprotein polypeptide B2 part_of ISO (PMID:11991638) RGD PMID:11991638 NCBI chr 3:130,399,239...130,408,821
Ensembl chr 3:130,399,248...130,408,812
JBrowse link
G Snrpd1 small nuclear ribonucleoprotein D1 polypeptide part_of IBA
ISO
PMID:21873635
(PMID:11991638)
RGD PMID:11991638 PMID:21873635 RGD:13792537 NCBI chr18:1,696,838...1,707,400
Ensembl chr18:1,696,852...1,708,256
JBrowse link
G Snrpd2 small nuclear ribonucleoprotein D2 polypeptide part_of ISO
IBA
(PMID:11991638)
PMID:21873635
RGD PMID:11991638 PMID:21873635 RGD:13792537 NCBI chr 1:78,798,377...78,801,227
Ensembl chr 1:78,798,377...78,803,351
JBrowse link
G Snrpd2l small nuclear ribonucleoprotein D2-like part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr20:27,253,384...27,253,841
Ensembl chr20:27,253,424...27,253,780
JBrowse link
G Snrpd3 small nuclear ribonucleoprotein D3 polypeptide part_of IBA
ISO
PMID:21873635
(PMID:11991638)
RGD PMID:11991638 PMID:21873635 RGD:13792537 NCBI chr20:13,130,112...13,145,947
Ensembl chr20:13,130,119...13,145,978
JBrowse link
G Snrpe small nuclear ribonucleoprotein polypeptide E part_of ISO (PMID:11991638) RGD PMID:11991638 NCBI chr13:45,050,986...45,057,231
Ensembl chr13:45,050,986...45,057,310
JBrowse link
G Snrpf small nuclear ribonucleoprotein polypeptide F part_of IBA
ISO
PMID:21873635
(PMID:11991638)
RGD PMID:11991638 PMID:21873635 RGD:13792537 NCBI chr 7:28,130,427...28,137,129
Ensembl chr 7:28,130,427...28,137,129
JBrowse link
G Snrpg small nuclear ribonucleoprotein polypeptide G part_of IBA
ISO
PMID:21873635
(PMID:11991638)
RGD PMID:11991638 PMID:21873635 RGD:13792537 NCBI chr 4:118,812,278...118,819,827
Ensembl chr 4:118,812,252...118,819,826
JBrowse link
G Snrpn small nuclear ribonucleoprotein polypeptide N part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:111,101,327...111,123,400 JBrowse link
G Snw1 SNW domain containing 1 part_of ISO (PMID:11991638) RGD PMID:11991638 NCBI chr 6:107,095,450...107,119,536
Ensembl chr 6:107,095,457...107,119,536
JBrowse link
G Srrm1 serine and arginine repetitive matrix 1 part_of ISO (PMID:11991638) RGD PMID:11991638 NCBI chr 5:147,559,515...147,591,895
Ensembl chr 5:147,559,514...147,591,849
JBrowse link
G Srrm2 serine/arginine repetitive matrix 2 part_of ISO (PMID:11991638) RGD PMID:11991638 NCBI chr10:12,815,471...12,848,750
Ensembl chr10:12,815,471...12,848,751
JBrowse link
G Srsf1 serine and arginine rich splicing factor 1 part_of ISO (PMID:11991638) RGD PMID:11991638 NCBI chr10:72,838,926...72,859,066
Ensembl chr10:72,839,274...72,845,336
JBrowse link
G Syf2 SYF2 pre-mRNA-splicing factor part_of IBA
ISO
PMID:21873635
(PMID:11991638)
RGD PMID:11991638 PMID:21873635 RGD:13792537 NCBI chr 5:147,156,492...147,164,416
Ensembl chr 5:147,156,480...147,164,414
JBrowse link
G Syncrip synaptotagmin binding, cytoplasmic RNA interacting protein part_of ISO (PMID:11991638) RGD PMID:11991638 NCBI chr 8:89,402,487...89,435,517
Ensembl chr 8:89,402,866...89,435,515
JBrowse link
G Tfip11 tuftelin interacting protein 11 part_of ISO (PMID:11991638) RGD PMID:11991638 NCBI chr12:44,299,619...44,311,851
Ensembl chr12:44,299,622...44,311,855
JBrowse link
G U2af1 U2 small nuclear RNA auxiliary factor 1 part_of ISO (PMID:11991638) RGD PMID:11991638 NCBI chr20:9,742,904...9,753,840
Ensembl chr20:9,742,905...9,753,832
JBrowse link
G Wdr83 WD repeat domain 83 part_of ISO (PMID:11991638) RGD PMID:11991638 NCBI chr19:23,076,948...23,082,569
Ensembl chr19:23,077,010...23,082,563
JBrowse link
G Xab2 XPA binding protein 2 part_of ISO (PMID:11991638) RGD PMID:11991638 NCBI chr12:1,667,672...1,679,702
Ensembl chr12:1,667,672...1,679,692
JBrowse link
G Zcchc8 zinc finger CCHC-type containing 8 part_of ISO
IBA
(PMID:11991638)
PMID:21873635
RGD PMID:11991638 PMID:21873635 RGD:13792537 NCBI chr12:32,869,170...32,892,707
Ensembl chr12:32,869,310...32,891,325
JBrowse link
U2-type catalytic step 2 spliceosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aqr aquarius intron-binding spliceosomal factor part_of ISO (PMID:28076346) RGD PMID:28076346 NCBI chr 3:100,874,987...100,945,026
Ensembl chr 3:100,874,987...100,945,044
JBrowse link
G Bcas2 BCAS2, pre-mRNA processing factor part_of ISO (PMID:28076346) RGD PMID:28076346 NCBI chr 2:190,692,503...190,700,386
Ensembl chr 2:190,692,461...190,700,389
JBrowse link
G Bud31 BUD31 homolog part_of ISO (PMID:28076346) RGD PMID:28076346 NCBI chr12:9,462,838...9,470,387
Ensembl chr12:9,462,441...9,470,509
JBrowse link
G Cdc40 cell division cycle 40 part_of ISO (PMID:28076346) RGD PMID:28076346 NCBI chr20:44,273,080...44,325,610
Ensembl chr20:44,273,089...44,325,358
JBrowse link
G Cdc5l cell division cycle 5-like part_of ISS
ISO
GO_REF:0000024
(PMID:28076346)
UniProt
RGD
PMID:28076346 GO_REF:0000024 NCBI chr 9:15,564,949...15,603,453
Ensembl chr 9:15,564,767...15,603,450
JBrowse link
G Crnkl1 crooked neck pre-mRNA splicing factor 1 part_of ISS
IBA
ISO
GO_REF:0000024
PMID:21873635
(PMID:28076346)
UniProt
RGD
PMID:28076346 PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr 3:133,338,593...133,354,329
Ensembl chr 6:1,140,615...1,142,918
Ensembl chr 3:1,140,615...1,142,918
JBrowse link
G Cwc15 CWC15 spliceosome-associated protein part_of ISS
ISO
GO_REF:0000024
(PMID:28076346)
UniProt
RGD
PMID:28076346 GO_REF:0000024 NCBI chr 8:11,305,401...11,316,326
Ensembl chr 8:11,305,424...11,316,325
JBrowse link
G Cwc22 CWC22 spliceosome associated protein homolog part_of ISO (PMID:28076346) RGD PMID:28076346 NCBI chr 3:62,815,230...62,864,269
Ensembl chr 3:62,802,045...62,864,228
JBrowse link
G Dhx8 DEAH-box helicase 8 part_of ISO (PMID:28076346) RGD PMID:28076346 NCBI chr10:86,667,641...86,705,454
Ensembl chr10:86,667,834...86,705,137
JBrowse link
G Eftud2 elongation factor Tu GTP binding domain containing 2 part_of ISO
IBA
(PMID:28076346)
PMID:21873635
RGD PMID:28076346 PMID:21873635 RGD:13792537 NCBI chr10:87,804,893...87,852,181
Ensembl chr10:87,804,892...87,846,079
JBrowse link
G LOC102548514 crooked neck-like protein 1-like part_of ISS
IBA
GO_REF:0000024
PMID:21873635
UniProt PMID:21873635 GO_REF:0000024, RGD:13792537
G Plrg1 pleiotropic regulator 1 part_of ISO
ISS
(PMID:28076346)
GO_REF:0000024
RGD
UniProt
PMID:28076346 GO_REF:0000024 NCBI chr 2:168,408,139...168,424,470
Ensembl chr 2:168,408,124...168,424,522
JBrowse link
G Ppie peptidylprolyl isomerase E part_of ISO (PMID:28076346) RGD PMID:28076346 NCBI chr 5:135,406,177...135,419,511
Ensembl chr 5:135,406,176...135,419,235
JBrowse link
G Ppil1 peptidylprolyl isomerase like 1 part_of ISO (PMID:28076346) RGD PMID:28076346 NCBI chr20:7,302,292...7,322,349
Ensembl chr20:7,302,621...7,322,354
JBrowse link
G Prpf19 pre-mRNA processing factor 19 part_of ISO (PMID:28076346) RGD PMID:28076346 NCBI chr 1:207,541,582...207,552,664
Ensembl chr 1:207,541,595...207,552,662
JBrowse link
G Prpf8 pre-mRNA processing factor 8 part_of ISO (PMID:28076346) RGD PMID:28076346 NCBI chr10:60,331,494...60,354,606
Ensembl chr10:60,331,494...60,354,606
JBrowse link
G Rbm22 RNA binding motif protein 22 part_of ISO
IBA
(PMID:28076346)
PMID:21873635
RGD PMID:28076346 PMID:21873635 RGD:13792537 NCBI chr18:54,013,374...54,024,182
Ensembl chr18:54,013,351...54,024,569
JBrowse link
G Snrnp40 small nuclear ribonucleoprotein U5 subunit 40 part_of ISO (PMID:28076346) RGD PMID:28076346 NCBI chr 5:142,700,632...142,733,776
Ensembl chr 5:142,700,534...142,733,776
JBrowse link
G Snrpa1 small nuclear ribonucleoprotein polypeptide A' part_of ISO (PMID:28076346) RGD PMID:28076346 NCBI chr 1:119,641,402...119,654,653
Ensembl chr 1:119,638,481...119,654,653
JBrowse link
G Snrpb small nuclear ribonucleoprotein polypeptides B and B1 part_of ISO
ISS
(PMID:28076346)
GO_REF:0000024
RGD
UniProt
PMID:28076346 GO_REF:0000024 NCBI chr 3:117,369,816...117,379,344
Ensembl chr 3:117,370,100...117,379,339
JBrowse link
G Snrpb2 small nuclear ribonucleoprotein polypeptide B2 part_of ISO (PMID:28076346) RGD PMID:28076346 NCBI chr 3:130,399,239...130,408,821
Ensembl chr 3:130,399,248...130,408,812
JBrowse link
G Snrpd1 small nuclear ribonucleoprotein D1 polypeptide part_of ISO (PMID:28076346) RGD PMID:28076346 NCBI chr18:1,696,838...1,707,400
Ensembl chr18:1,696,852...1,708,256
JBrowse link
G Snrpd2 small nuclear ribonucleoprotein D2 polypeptide part_of ISO (PMID:28076346) RGD PMID:28076346 NCBI chr 1:78,798,377...78,801,227
Ensembl chr 1:78,798,377...78,803,351
JBrowse link
G Snrpd3 small nuclear ribonucleoprotein D3 polypeptide part_of ISO (PMID:28076346) RGD PMID:28076346 NCBI chr20:13,130,112...13,145,947
Ensembl chr20:13,130,119...13,145,978
JBrowse link
G Snrpe small nuclear ribonucleoprotein polypeptide E part_of ISO (PMID:28076346) RGD PMID:28076346 NCBI chr13:45,050,986...45,057,231
Ensembl chr13:45,050,986...45,057,310
JBrowse link
G Snrpf small nuclear ribonucleoprotein polypeptide F part_of ISO (PMID:28076346) RGD PMID:28076346 NCBI chr 7:28,130,427...28,137,129
Ensembl chr 7:28,130,427...28,137,129
JBrowse link
G Snrpg small nuclear ribonucleoprotein polypeptide G part_of ISO (PMID:28076346) RGD PMID:28076346 NCBI chr 4:118,812,278...118,819,827
Ensembl chr 4:118,812,252...118,819,826
JBrowse link
G Snw1 SNW domain containing 1 part_of ISO (PMID:28076346) RGD PMID:28076346 NCBI chr 6:107,095,450...107,119,536
Ensembl chr 6:107,095,457...107,119,536
JBrowse link
G Srrm2 serine/arginine repetitive matrix 2 part_of ISO (PMID:28076346) RGD PMID:28076346 NCBI chr10:12,815,471...12,848,750
Ensembl chr10:12,815,471...12,848,751
JBrowse link
G Syf2 SYF2 pre-mRNA-splicing factor part_of ISS
ISO
GO_REF:0000024
(PMID:28076346)
UniProt
RGD
PMID:28076346 GO_REF:0000024 NCBI chr 5:147,156,492...147,164,416
Ensembl chr 5:147,156,480...147,164,414
JBrowse link
G Xab2 XPA binding protein 2 part_of ISS
ISO
IBA
GO_REF:0000024
(PMID:28076346)
PMID:21873635
UniProt
RGD
PMID:28076346 PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr12:1,667,672...1,679,702
Ensembl chr12:1,667,672...1,679,692
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 20009
    protein-containing complex 6012
      catalytic complex 1464
        catalytic step 2 spliceosome 95
          U12-type catalytic step 2 spliceosome 0
          U2-type catalytic step 2 spliceosome 31
Path 2
Term Annotations click to browse term
  cellular_component 20009
    cellular anatomical entity 19713
      organelle 13094
        membrane-bounded organelle 11654
          intracellular membrane-bounded organelle 11186
            nucleus 7027
              nuclear protein-containing complex 1198
                spliceosomal complex 199
                  catalytic step 2 spliceosome 95
                    U12-type catalytic step 2 spliceosome 0
                    U2-type catalytic step 2 spliceosome 31
paths to the root