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ONTOLOGY REPORT - ANNOTATIONS


Term:demethylation
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Accession:GO:0070988 term browser browse the term
Definition:The process of removing one or more methyl groups from a molecule.


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demethylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cyp1a1 cytochrome P450, family 1, subfamily a, polypeptide 1 involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 8:58,096,021...58,102,130
Ensembl chr 8:58,096,077...58,102,125
JBrowse link
G Cyp51 cytochrome P450, family 51 involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 4:30,036,956...30,055,410
Ensembl chr 4:30,036,865...30,055,410
JBrowse link
G Mmachc metabolism of cobalamin associated C involved_in ISO (PMID:19801555) RGD PMID:19801555 NCBI chr 5:130,166,056...130,172,735
Ensembl chr 5:130,166,451...130,172,601
JBrowse link
G Por cytochrome p450 oxidoreductase IDA positive regulation of N-demethylation by cytochrome P450 2B4 RGD PMID:19171935 RGD:4889812 NCBI chr12:20,951,058...20,999,198
Ensembl chr12:20,951,058...20,999,245
JBrowse link
DNA demethylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aicda activation-induced cytidine deaminase involved_in ISO
IBA
(PMID:21496894)
PMID:21873635
RGD PMID:21496894 PMID:21873635 RGD:13792537 NCBI chr 4:155,774,132...155,783,972
Ensembl chr 4:155,774,132...155,783,972
JBrowse link
G Alkbh1 alkB homolog 1, histone H2A dioxygenase involved_in ISO (PMID:18603530), (PMID:30017583), (PMID:30392959) RGD PMID:18603530 PMID:30017583 PMID:30392959 NCBI chr 6:107,068,309...107,088,779
Ensembl chr 6:107,068,475...107,088,759
JBrowse link
G Alkbh4 alkB homolog 4, lysine demethylase involved_in ISO (MGI:6323482|PMID:30982744) RGD PMID:30982744 MGI:6323482 NCBI chr12:20,524,030...20,529,947
Ensembl chr12:20,524,030...20,529,947
JBrowse link
G Apex1 apurinic/apyrimidinic endodeoxyribonuclease 1 involved_in ISS
ISO
GO_REF:0000024
(PMID:21496894)
UniProt
RGD
PMID:21496894 GO_REF:0000024 NCBI chr15:24,144,595...24,146,785
Ensembl chr15:24,144,362...24,146,785
JBrowse link
G Apobec1 apolipoprotein B mRNA editing enzyme catalytic subunit 1 involved_in IBA
ISO
ISS
PMID:21873635
(MGI:5285126|PMID:21496894)
GO_REF:0000024
RGD
UniProt
PMID:21496894 PMID:21873635 GO_REF:0000024 MGI:5285126, RGD:13792537 NCBI chr 4:155,800,030...155,828,515
Ensembl chr 4:155,800,887...155,827,390
JBrowse link
G Apobec2 apolipoprotein B mRNA editing enzyme catalytic subunit 2 involved_in ISO
IBA
(PMID:21496894)
PMID:21873635
RGD PMID:21496894 PMID:21873635 RGD:13792537 NCBI chr 9:12,564,955...12,578,461
Ensembl chr 9:12,564,920...12,578,458
JBrowse link
G Apobec3 apolipoprotein B mRNA editing enzyme catalytic subunit 3 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:111,433,789...111,453,032
Ensembl chr 7:111,433,764...111,452,922
JBrowse link
G Fto FTO, alpha-ketoglutarate dependent dioxygenase involved_in ISO (PMID:18775698)
(MGI:3817348|PMID:18775698), (MGI:4430814|PMID:17991826)
RGD PMID:17991826 PMID:18775698 MGI:3817348 MGI:4430814 NCBI chr19:15,284,898...15,692,142
Ensembl chr19:15,349,696...15,692,083
JBrowse link
G Tdg thymine-DNA glycosylase involved_in ISO (MGI:5141157|PMID:21722948), (MGI:5287540|PMID:21817016), (MGI:5487523|PMID:21278727) RGD PMID:21278727 PMID:21722948 PMID:21817016 MGI:5141157 MGI:5287540 MGI:5487523 NCBI chr 7:21,077,853...21,097,617
Ensembl chr 7:21,077,853...21,097,567
JBrowse link
G Tet1 tet methylcytosine dioxygenase 1 involved_in
acts_upstream_of_or_within
ISO
IBA
(PMID:21496894)
(MGI:4822076|PMID:20639862)
(MGI:3844762|PMID:19372391), (MGI:5285126|PMID:21496894)
PMID:21873635
RGD PMID:19372391 PMID:20639862 PMID:21496894 PMID:21873635 MGI:3844762 MGI:4822076 MGI:5285126, RGD:13792537 NCBI chr20:25,761,042...25,840,926
Ensembl chr20:25,768,120...25,833,052
JBrowse link
G Tet2 tet methylcytosine dioxygenase 2 involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
(MGI:4822076|PMID:20639862)
(PMID:24315485)
RGD PMID:20639862 PMID:24315485 PMID:21873635 MGI:4822076, RGD:13792537 NCBI chr 2:221,988,645...222,072,813
Ensembl chr 2:221,988,645...222,072,534
JBrowse link
G Tet3 tet methylcytosine dioxygenase 3 involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
(MGI:5525037|PMID:23690950)
(MGI:4822076|PMID:20639862)
(MGI:5289702|PMID:21892189), (MGI:5432962|PMID:22722204), (MGI:5465527|PMID:21407207)
RGD PMID:20639862 PMID:21407207 PMID:21892189 PMID:22722204 PMID:23690950 More... MGI:4822076 MGI:5289702 MGI:5432962 MGI:5465527 MGI:5525037, RGD:13792537 NCBI chr 4:115,867,412...115,964,433
Ensembl chr 4:115,871,265...115,964,193
JBrowse link
histone demethylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fbxl19 F-box and leucine-rich repeat protein 19 involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 1:182,356,899...182,380,839
Ensembl chr 1:182,360,830...182,380,083
JBrowse link
G Jarid2 jumonji and AT-rich interaction domain containing 2 involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr17:19,777,487...19,957,696
Ensembl chr17:19,777,266...19,955,690
JBrowse link
G Kdm4a lysine demethylase 4A involved_in ISO (PMID:16024779) RGD PMID:16024779 NCBI chr 5:131,672,754...131,719,534
Ensembl chr 5:131,672,754...131,719,501
JBrowse link
G Kdm6b lysine demethylase 6B acts_upstream_of_or_within ISO (MGI:3764743|PMID:17928865) RGD PMID:17928865 MGI:3764743 NCBI chr10:54,120,716...54,142,212
Ensembl chr10:54,121,848...54,130,794
JBrowse link
G RGD1310212 similar to KIAA1111-like protein involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 7:12,194,437...12,200,509
Ensembl chr 7:12,194,441...12,200,446
JBrowse link
histone H3-K27 demethylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Kdm6a lysine demethylase 6A involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
(MGI:5506833|PMID:23658530)
RGD PMID:23658530 PMID:21873635 MGI:5506833, RGD:13792537 NCBI chr  X:4,337,466...4,477,100
Ensembl chr  X:4,337,750...4,477,062
JBrowse link
G Kdm6b lysine demethylase 6B involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
(MGI:5574281|PMID:23856522)
(MGI:3809360|PMID:18716661)
(PMID:28262558)
RGD PMID:18716661 PMID:23856522 PMID:28262558 PMID:21873635 MGI:3809360 MGI:5574281, RGD:13792537 NCBI chr10:54,120,716...54,142,212
Ensembl chr10:54,121,848...54,130,794
JBrowse link
G Kdm7a lysine demethylase 7A involved_in ISO (PMID:20023638), (PMID:20194436), (PMID:20622853)
(MGI:4437342|PMID:20194436)
RGD PMID:20023638 PMID:20194436 PMID:20622853 MGI:4437342 NCBI chr 4:67,899,407...67,974,264
Ensembl chr 4:67,904,307...67,966,998
JBrowse link
G Pagr1 Paxip1-associated glutamate-rich protein 1 acts_upstream_of_or_within ISO (MGI:5448135|PMID:22949634) RGD PMID:22949634 MGI:5448135 NCBI chr 1:181,622,708...181,624,996 JBrowse link
G Phf8 PHD finger protein 8 involved_in ISO (PMID:20622853), (PMID:20622854) RGD PMID:20622853 PMID:20622854 NCBI chr  X:20,524,103...20,623,459
Ensembl chr  X:20,524,558...20,623,410
JBrowse link
histone H3-K36 demethylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Kdm2a lysine demethylase 2A involved_in
acts_upstream_of_or_within
ISO (PMID:21187428), (PMID:28262558)
(PMID:20417597)
RGD PMID:20417597 PMID:21187428 PMID:28262558 NCBI chr 1:201,612,427...201,682,359
Ensembl chr 1:201,612,453...201,680,787
JBrowse link
G Kdm2b lysine demethylase 2B involved_in
acts_upstream_of_or_within
ISO (PMID:26237645)
(MGI:5433809|PMID:21540074)
RGD PMID:21540074 PMID:26237645 MGI:5433809 NCBI chr12:33,566,530...33,701,366
Ensembl chr12:33,574,657...33,701,355
JBrowse link
G Kdm4a lysine demethylase 4A involved_in ISO (PMID:21914792) RGD PMID:21914792 NCBI chr 5:131,672,754...131,719,534
Ensembl chr 5:131,672,754...131,719,501
JBrowse link
G Kdm4b lysine demethylase 4B involved_in
acts_upstream_of_or_within
ISO (PMID:21914792)
(MGI:3629551|PMID:16738407)
RGD PMID:16738407 PMID:21914792 MGI:3629551 NCBI chr 9:1,158,737...1,237,228
Ensembl chr 9:1,158,752...1,236,543
JBrowse link
G Kdm4c lysine demethylase 4C involved_in ISO (PMID:21914792) RGD PMID:21914792 NCBI chr 5:88,100,710...88,306,821
Ensembl chr 5:88,100,733...88,306,818
JBrowse link
G Kdm7a lysine demethylase 7A involved_in ISO (PMID:20622853) RGD PMID:20622853 NCBI chr 4:67,899,407...67,974,264
Ensembl chr 4:67,904,307...67,966,998
JBrowse link
G Kdm8 lysine demethylase 8 involved_in IBA
IEA
ISS
ISO
PMID:21873635
GO_REF:0000107
GO_REF:0000024
(PMID:20457893)
Ensembl
UniProt
RGD
PMID:20457893 PMID:21873635 GO_REF:0000024 GO_REF:0000107, RGD:13792537 NCBI chr 1:180,013,969...180,028,829
Ensembl chr 1:180,020,656...180,028,841
JBrowse link
G Phf8 PHD finger protein 8 involved_in ISO (PMID:20208542), (PMID:20622853) RGD PMID:20208542 PMID:20622853 NCBI chr  X:20,524,103...20,623,459
Ensembl chr  X:20,524,558...20,623,410
JBrowse link
G Riox1 ribosomal oxygenase 1 involved_in IBA
ISO
PMID:21873635
(MGI:4418587|PMID:19927124)
RGD PMID:19927124 PMID:21873635 MGI:4418587, RGD:13792537 NCBI chr 6:103,579,642...103,582,260
Ensembl chr 6:103,579,642...103,582,250
JBrowse link
G Riox2 ribosomal oxygenase 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr11:40,861,365...40,884,782
Ensembl chr11:40,860,774...40,884,574
JBrowse link
histone H3-K4 demethylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Kdm1a lysine demethylase 1A acts_upstream_of_or_within
involved_in
IEP
ISO
IMP
(PMID:24217620)
(PMID:15620353), (PMID:20228790)
(MGI:5562615|PMID:24217620), (MGI:5574544|PMID:24843136)
RGD PMID:15620353 PMID:20228790 PMID:24217620 PMID:24843136 PMID:23221071 More... MGI:5562615 MGI:5574544, RGD:9588312, RGD:9588315 NCBI chr 5:148,782,976...148,838,319
Ensembl chr 5:148,782,976...148,838,319
JBrowse link
G Kdm1b lysine demethylase 1B involved_in
acts_upstream_of_or_within
ISO (PMID:23266887)
(MGI:4352982|PMID:19407342), (MGI:4358629|PMID:19727073)
RGD PMID:19407342 PMID:19727073 PMID:23266887 MGI:4352982 MGI:4358629 NCBI chr17:17,602,961...17,643,865
Ensembl chr17:17,602,961...17,643,800
JBrowse link
G Kdm5a lysine demethylase 5A acts_upstream_of_or_within
involved_in
IEP
ISO
(MGI:3789777|PMID:18483221)
(PMID:18270511)
RGD PMID:18270511 PMID:18483221 PMID:24679876 MGI:3789777, RGD:9588526 NCBI chr 4:153,565,909...153,643,912
Ensembl chr 4:153,565,846...153,642,422
JBrowse link
G Kdm5b lysine demethylase 5B involved_in
acts_upstream_of_or_within
ISO (PMID:20228790), (PMID:24952722), (PMID:27214403), (PMID:28262558)
(MGI:3715069|PMID:17320160)
RGD PMID:17320160 PMID:20228790 PMID:24952722 PMID:27214403 PMID:28262558 MGI:3715069 NCBI chr13:46,001,589...46,073,868
Ensembl chr13:46,002,542...46,073,872
JBrowse link
G Kdm5c lysine demethylase 5C acts_upstream_of_or_within
involved_in
ISO (MGI:5528429|PMID:23246292)
(PMID:17320160)
(PMID:28262558)
RGD PMID:17320160 PMID:23246292 PMID:28262558 MGI:5528429 NCBI chr  X:21,345,459...21,387,045
Ensembl chr  X:21,345,481...21,381,870
JBrowse link
G Kdm5d lysine demethylase 5D acts_upstream_of_or_within ISO (PMID:17320160) RGD PMID:17320160 NCBI chr  Y:527,069...624,019
Ensembl chr  Y:530,401...624,018
JBrowse link
G Riox1 ribosomal oxygenase 1 involved_in IBA
ISO
PMID:21873635
(MGI:4418587|PMID:19927124)
RGD PMID:19927124 PMID:21873635 MGI:4418587, RGD:13792537 NCBI chr 6:103,579,642...103,582,260
Ensembl chr 6:103,579,642...103,582,250
JBrowse link
G Riox2 ribosomal oxygenase 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr11:40,861,365...40,884,782
Ensembl chr11:40,860,774...40,884,574
JBrowse link
histone H3-K4 demethylation, trimethyl-H3-K4-specific term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Kdm5a lysine demethylase 5A involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 4:153,565,909...153,643,912
Ensembl chr 4:153,565,846...153,642,422
JBrowse link
G Kdm5b lysine demethylase 5B involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr13:46,001,589...46,073,868
Ensembl chr13:46,002,542...46,073,872
JBrowse link
G Kdm5c lysine demethylase 5C involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr  X:21,345,459...21,387,045
Ensembl chr  X:21,345,481...21,381,870
JBrowse link
G Kdm5d lysine demethylase 5D involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr  Y:527,069...624,019
Ensembl chr  Y:530,401...624,018
JBrowse link
histone H3-K9 demethylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hr HR, lysine demethylase and nuclear receptor corepressor involved_in IBA
IEA
PMID:21873635
GO_REF:0000002
InterPro PMID:21873635 GO_REF:0000002, RGD:13792537 NCBI chr15:45,626,835...45,646,313
Ensembl chr15:45,626,835...45,646,313
JBrowse link
G Hsf4 heat shock transcription factor 4 acts_upstream_of_or_within ISO (MGI:3821682|PMID:18755693) RGD PMID:18755693 MGI:3821682 NCBI chr19:33,147,755...33,153,479
Ensembl chr19:33,147,755...33,153,479
JBrowse link
G Jmjd1c jumonji domain containing 1C involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr20:21,332,147...21,494,220
Ensembl chr20:21,332,147...21,463,122
JBrowse link
G Kdm1a lysine demethylase 1A involved_in ISO (PMID:16079795), (PMID:20228790)
(MGI:4838688|PMID:20833138)
RGD PMID:16079795 PMID:20228790 PMID:20833138 MGI:4838688 NCBI chr 5:148,782,976...148,838,319
Ensembl chr 5:148,782,976...148,838,319
JBrowse link
G Kdm3a lysine demethylase 3A involved_in
acts_upstream_of_or_within
IBA
IEA
ISO
PMID:21873635
GO_REF:0000002
GO_REF:0000107
(MGI:3759699|PMID:17938240)
(PMID:16603237), (PMID:28262558)
InterPro
Ensembl
RGD
PMID:16603237 PMID:17938240 PMID:28262558 PMID:21873635 GO_REF:0000002 GO_REF:0000107 MGI:3759699, RGD:13792537 NCBI chr 4:103,630,907...103,675,073
Ensembl chr 4:103,630,908...103,675,073
JBrowse link
G Kdm3b lysine demethylase 3B involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr18:26,380,859...26,436,701
Ensembl chr18:26,380,964...26,436,628
JBrowse link
G Kdm4a lysine demethylase 4A involved_in ISO (PMID:21914792) RGD PMID:21914792 NCBI chr 5:131,672,754...131,719,534
Ensembl chr 5:131,672,754...131,719,501
JBrowse link
G Kdm4b lysine demethylase 4B involved_in
acts_upstream_of_or_within
ISO (PMID:21914792), (PMID:28262558)
(MGI:3629551|PMID:16738407)
RGD PMID:16738407 PMID:21914792 PMID:28262558 MGI:3629551 NCBI chr 9:1,158,737...1,237,228
Ensembl chr 9:1,158,752...1,236,543
JBrowse link
G Kdm4c lysine demethylase 4C involved_in
acts_upstream_of_or_within
ISO (PMID:17277772), (PMID:18066052), (PMID:21914792), (PMID:28262558)
(MGI:3759699|PMID:17938240)
RGD PMID:17277772 PMID:17938240 PMID:18066052 PMID:21914792 PMID:28262558 MGI:3759699 NCBI chr 5:88,100,710...88,306,821
Ensembl chr 5:88,100,733...88,306,818
JBrowse link
G Kdm4d lysine demethylase 4D involved_in
acts_upstream_of_or_within
ISO (PMID:21914792), (PMID:25124442)
MGI:5051955 (MGI:5050032|PMID:21293030), (MGI:5552986|PMID:24550317)
RGD PMID:21293030 PMID:21914792 PMID:24550317 PMID:25124442 MGI:5050032 MGI:5552986 NCBI chr 8:11,279,756...11,304,920
Ensembl chr 8:11,268,859...11,305,290
JBrowse link
G Kdm7a lysine demethylase 7A involved_in ISO (PMID:20023638), (PMID:20194436), (PMID:20622853)
(MGI:4437342|PMID:20194436)
RGD PMID:20023638 PMID:20194436 PMID:20622853 MGI:4437342 NCBI chr 4:67,899,407...67,974,264
Ensembl chr 4:67,904,307...67,966,998
JBrowse link
G Phf2 PHD finger protein 2 involved_in ISO (MGI:4818540|PMID:20129925) RGD PMID:20129925 MGI:4818540 NCBI chr17:15,783,221...15,851,209
Ensembl chr17:15,781,864...15,851,208
JBrowse link
G Phf8 PHD finger protein 8 involved_in ISO (PMID:20023638), (PMID:20208542), (PMID:20346720), (PMID:20622853), (PMID:20622854) RGD PMID:20023638 PMID:20208542 PMID:20346720 PMID:20622853 PMID:20622854 NCBI chr  X:20,524,103...20,623,459
Ensembl chr  X:20,524,558...20,623,410
JBrowse link
histone H3-R2 demethylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Jmjd6 jumonji domain containing 6, arginine demethylase and lysine hydroxylase involved_in
NOT|involved_in
ISO (PMID:17947579)
(PMID:22189873)
RGD PMID:17947579 PMID:22189873 NCBI chr10:102,041,131...102,047,182
Ensembl chr10:102,041,120...102,047,182
JBrowse link
histone H4-K20 demethylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Kdm7a lysine demethylase 7A involved_in ISO (PMID:20622853) RGD PMID:20622853 NCBI chr 4:67,899,407...67,974,264
Ensembl chr 4:67,904,307...67,966,998
JBrowse link
G Phf2 PHD finger protein 2 involved_in IEA
ISO
GO_REF:0000107
(MGI:6716956|PMID:22921934)
Ensembl
RGD
PMID:22921934 GO_REF:0000107 MGI:6716956 NCBI chr17:15,783,221...15,851,209
Ensembl chr17:15,781,864...15,851,208
JBrowse link
G Phf8 PHD finger protein 8 involved_in ISO (PMID:20622853), (PMID:20622854) RGD PMID:20622853 PMID:20622854 NCBI chr  X:20,524,103...20,623,459
Ensembl chr  X:20,524,558...20,623,410
JBrowse link
histone H4-R3 demethylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Jmjd6 jumonji domain containing 6, arginine demethylase and lysine hydroxylase involved_in
NOT|involved_in
ISS
ISO
GO_REF:0000024
(PMID:22189873)
(PMID:17947579), (PMID:24360279), (PMID:24498420)
UniProt
RGD
PMID:17947579 PMID:22189873 PMID:24360279 PMID:24498420 GO_REF:0000024 NCBI chr10:102,041,131...102,047,182
Ensembl chr10:102,041,120...102,047,182
JBrowse link
histone lysine demethylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ube2b ubiquitin-conjugating enzyme E2B acts_upstream_of_or_within ISO MGI:2183933 (MGI:3720437|PMID:17488778) RGD PMID:17488778 MGI:3720437 NCBI chr10:36,248,434...36,263,379
Ensembl chr10:36,248,438...36,264,665
JBrowse link
negative regulation of DNA demethylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07015759.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537
G AABR07017902.2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr15:27,225,434...27,225,910 JBrowse link
G AABR07026842.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537
G AABR07058017.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537
G AABR07061871.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537
G Dppa3 developmental pluripotency-associated 3 involved_in ISS
ISO
IBA
GO_REF:0000024
(MGI:5432962|PMID:22722204), (MGI:5447615|PMID:17143267), (MGI:5465527|PMID:21407207)
PMID:21873635
UniProt
RGD
PMID:17143267 PMID:21407207 PMID:22722204 PMID:21873635 GO_REF:0000024 MGI:5432962 MGI:5447615 MGI:5465527, RGD:13792537 NCBI chr 4:155,851,461...155,854,845
Ensembl chr 4:155,815,296...155,854,861
JBrowse link
G Dppa3l1 developmental pluripotency associated 3-like 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:56,421,825...56,422,277
Ensembl chr 8:56,421,825...56,422,277
JBrowse link
G Gata3 GATA binding protein 3 acts_upstream_of_or_within ISO (MGI:3046385|PMID:15087456) RGD PMID:15087456 MGI:3046385 NCBI chr17:68,643,760...68,666,000
Ensembl chr17:68,643,873...68,665,391
JBrowse link
G LOC679766 similar to developmental pluripotency-associated 3 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537
G Trim28 tripartite motif-containing 28 acts_upstream_of_or_within ISO MGI:1928907 (MGI:5319411|PMID:22495301) RGD PMID:22495301 MGI:5319411 NCBI chr 1:73,652,441...73,659,388
Ensembl chr 1:73,652,709...73,659,380
JBrowse link
oxidative demethylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Alkbh1 alkB homolog 1, histone H2A dioxygenase involved_in ISO (PMID:18603530) RGD PMID:18603530 NCBI chr 6:107,068,309...107,088,779
Ensembl chr 6:107,068,475...107,088,759
JBrowse link
G Alkbh4 alkB homolog 4, lysine demethylase involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr12:20,524,030...20,529,947
Ensembl chr12:20,524,030...20,529,947
JBrowse link
G Cyp1a2 cytochrome P450, family 1, subfamily a, polypeptide 2 involved_in ISO (PMID:18619574) RGD PMID:18619574 NCBI chr 8:58,075,367...58,082,255
Ensembl chr 8:58,075,367...58,082,312
JBrowse link
G Cyp2c79 cytochrome P450, family 2, subfamily c, polypeptide 79 involved_in ISO (PMID:18619574) RGD PMID:18619574
G Cyp2d4 cytochrome P450, family 2, subfamily d, polypeptide 4 involved_in ISO (PMID:15039299), (PMID:19438707) RGD PMID:15039299 PMID:19438707 NCBI chr 7:113,882,584...113,891,754
Ensembl chr 7:113,881,618...113,891,759
JBrowse link
G Cyp3a18 cytochrome P450, family 3, subfamily a, polypeptide 18 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr12:8,880,528...8,930,382
Ensembl chr12:8,880,528...8,930,381
JBrowse link
G Cyp3a2 cytochrome P450, family 3, subfamily a, polypeptide 2 involved_in IDA
ISO
IBA
(PMID:15039299), (PMID:18619574)
PMID:21873635
RGD PMID:15039299 PMID:18619574 PMID:12971802 PMID:21873635 RGD:5129544, RGD:13792537 NCBI chr12:9,207,986...9,230,038
Ensembl chr12:9,015,383...9,285,008
JBrowse link
G Cyp3a23-3a1 cytochrome P450, family 3, subfamily a, polypeptide 23-polypeptide 1 involved_in IDA
IBA
PMID:21873635 RGD
GO_Central
PMID:12971802 PMID:21873635 RGD:5129544, RGD:13792537 NCBI chr12:9,256,159...9,285,020
Ensembl chr12:9,254,475...9,285,030
JBrowse link
G Cyp3a62 cytochrome P450, family 3, subfamily a, polypeptide 62 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr12:16,397,998...16,433,833
Ensembl chr12:16,397,998...16,433,833
JBrowse link
G Cyp3a9 cytochrome P450, family 3, subfamily a, polypeptide 9 involved_in ISO
IBA
(PMID:15039299)
PMID:21873635
RGD PMID:15039299 PMID:21873635 RGD:13792537 NCBI chr12:16,806,222...16,846,428
Ensembl chr12:16,806,207...16,846,422
JBrowse link
G Fto FTO, alpha-ketoglutarate dependent dioxygenase involved_in ISO (PMID:18775698)
(MGI:3817348|PMID:18775698)
RGD PMID:18775698 MGI:3817348 NCBI chr19:15,284,898...15,692,142
Ensembl chr19:15,349,696...15,692,083
JBrowse link
G Tet1 tet methylcytosine dioxygenase 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr20:25,761,042...25,840,926
Ensembl chr20:25,768,120...25,833,052
JBrowse link
G Tet2 tet methylcytosine dioxygenase 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:221,988,645...222,072,813
Ensembl chr 2:221,988,645...222,072,534
JBrowse link
G Tet3 tet methylcytosine dioxygenase 3 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:115,867,412...115,964,433
Ensembl chr 4:115,871,265...115,964,193
JBrowse link
oxidative DNA demethylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Alkbh2 alkB homolog 2, alpha-ketoglutarate-dependent dioxygenase involved_in ISO
IBA
(PMID:18432238)
PMID:21873635
RGD PMID:18432238 PMID:21873635 RGD:13792537 NCBI chr12:42,494,187...42,500,929
Ensembl chr12:42,496,300...42,500,914
JBrowse link
G Alkbh4 alkB homolog 4, lysine demethylase involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr12:20,524,030...20,529,947
Ensembl chr12:20,524,030...20,529,947
JBrowse link
oxidative RNA demethylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Alkbh1 alkB homolog 1, histone H2A dioxygenase involved_in ISO
IBA
(PMID:31188562)
PMID:21873635
RGD PMID:31188562 PMID:21873635 RGD:13792537 NCBI chr 6:107,068,309...107,088,779
Ensembl chr 6:107,068,475...107,088,759
JBrowse link
G Jmjd6 jumonji domain containing 6, arginine demethylase and lysine hydroxylase involved_in ISS
ISO
GO_REF:0000024
(PMID:24360279)
UniProt
RGD
PMID:24360279 GO_REF:0000024 NCBI chr10:102,041,131...102,047,182
Ensembl chr10:102,041,120...102,047,182
JBrowse link
oxidative single-stranded DNA demethylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Alkbh1 alkB homolog 1, histone H2A dioxygenase involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:107,068,309...107,088,779
Ensembl chr 6:107,068,475...107,088,759
JBrowse link
G Alkbh3 alkB homolog 3, alpha-ketoglutarate-dependent dioxygenase involved_in ISO
ISS
(PMID:16858410), (PMID:22055184)
GO_REF:0000024
RGD
UniProt
PMID:16858410 PMID:22055184 GO_REF:0000024 NCBI chr 3:79,939,515...79,972,820
Ensembl chr 3:79,939,600...79,972,000
JBrowse link
G Fto FTO, alpha-ketoglutarate dependent dioxygenase involved_in IBA
IEA
ISO
ISS
PMID:21873635
GO_REF:0000107
(MGI:3817348|PMID:18775698)
(PMID:18775698), (PMID:20376003)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:18775698 PMID:20376003 PMID:21873635 GO_REF:0000024 GO_REF:0000107 MGI:3817348, RGD:13792537 NCBI chr19:15,284,898...15,692,142
Ensembl chr19:15,349,696...15,692,083
JBrowse link
oxidative single-stranded RNA demethylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Alkbh3 alkB homolog 3, alpha-ketoglutarate-dependent dioxygenase involved_in ISO (PMID:26863196), (PMID:26863410) RGD PMID:26863196 PMID:26863410 NCBI chr 3:79,939,515...79,972,820
Ensembl chr 3:79,939,600...79,972,000
JBrowse link
G Alkbh5 alkB homolog 5, RNA demethylase involved_in IBA
ISO
ISS
PMID:21873635
(MGI:6111276|PMID:29279410)
(PMID:23177736), (PMID:24616105)
GO_REF:0000024
RGD
UniProt
PMID:23177736 PMID:24616105 PMID:29279410 PMID:21873635 GO_REF:0000024 MGI:6111276, RGD:13792537 NCBI chr10:45,344,888...45,366,331
Ensembl chr10:45,343,395...45,366,331
JBrowse link
G Fto FTO, alpha-ketoglutarate dependent dioxygenase involved_in ISS
IEA
ISO
IBA
GO_REF:0000024
GO_REF:0000107
(MGI:3817348|PMID:18775698)
(PMID:18775698), (PMID:22002720), (PMID:25452335), (PMID:26457839), (PMID:26458103), (PMID:28002401), (PMID:30197295)
PMID:21873635
UniProt
Ensembl
RGD
PMID:18775698 PMID:22002720 PMID:25452335 PMID:26457839 PMID:26458103 More... GO_REF:0000024 GO_REF:0000107 MGI:3817348, RGD:13792537 NCBI chr19:15,284,898...15,692,142
Ensembl chr19:15,349,696...15,692,083
JBrowse link
positive regulation of DNA demethylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Otud4 OTU deubiquitinase 4 involved_in ISO (PMID:25944111) RGD PMID:25944111 NCBI chr19:28,236,713...28,279,815
Ensembl chr19:28,236,713...28,279,815
JBrowse link
G Stpg4 sperm-tail PG-rich repeat containing 4 involved_in IBA
ISO
PMID:21873635
(MGI:5762940|PMID:23560077)
RGD PMID:23560077 PMID:21873635 MGI:5762940, RGD:13792537 NCBI chr 6:7,108,827...7,158,519
Ensembl chr 6:7,108,869...7,151,390
JBrowse link
G Tox thymocyte selection-associated high mobility group box involved_in ISO (MGI:3045816|PMID:15078895) RGD PMID:15078895 MGI:3045816 NCBI chr 5:19,874,994...20,171,272
Ensembl chr 5:19,874,467...20,171,272
JBrowse link
G Usp7 ubiquitin specific peptidase 7 involved_in ISS
IEA
ISO
GO_REF:0000024
GO_REF:0000107
(PMID:25944111)
UniProt
Ensembl
RGD
PMID:25944111 GO_REF:0000024 GO_REF:0000107 NCBI chr10:6,880,684...6,925,033
Ensembl chr10:6,828,795...6,925,355
JBrowse link
G Usp9x ubiquitin specific peptidase 9, X-linked involved_in ISO (PMID:25944111) RGD PMID:25944111 NCBI chr  X:9,588,825...9,726,993
Ensembl chr  X:9,588,825...9,696,711
JBrowse link
protein demethylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Alkbh4 alkB homolog 4, lysine demethylase involved_in IBA
ISO
PMID:21873635
(PMID:23673617)
RGD PMID:23673617 PMID:21873635 RGD:13792537 NCBI chr12:20,524,030...20,529,947
Ensembl chr12:20,524,030...20,529,947
JBrowse link
G Fbxl19 F-box and leucine-rich repeat protein 19 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:182,356,899...182,380,839
Ensembl chr 1:182,360,830...182,380,083
JBrowse link
G Jmjd6 jumonji domain containing 6, arginine demethylase and lysine hydroxylase involved_in ISO
ISS
(PMID:24498420)
GO_REF:0000024
RGD
UniProt
PMID:24498420 GO_REF:0000024 NCBI chr10:102,041,131...102,047,182
Ensembl chr10:102,041,120...102,047,182
JBrowse link
G Kdm1a lysine demethylase 1A involved_in ISO (PMID:17805299) RGD PMID:17805299 NCBI chr 5:148,782,976...148,838,319
Ensembl chr 5:148,782,976...148,838,319
JBrowse link
G Kdm2a lysine demethylase 2A involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:201,612,427...201,682,359
Ensembl chr 1:201,612,453...201,680,787
JBrowse link
G Kdm2b lysine demethylase 2B involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr12:33,566,530...33,701,366
Ensembl chr12:33,574,657...33,701,355
JBrowse link
G Kdm7a lysine demethylase 7A involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:67,899,407...67,974,264
Ensembl chr 4:67,904,307...67,966,998
JBrowse link
G Phf2 PHD finger protein 2 involved_in IBA
ISO
PMID:21873635
(PMID:21532585)
RGD PMID:21532585 PMID:21873635 RGD:13792537 NCBI chr17:15,783,221...15,851,209
Ensembl chr17:15,781,864...15,851,208
JBrowse link
G Phf8 PHD finger protein 8 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:20,524,103...20,623,459
Ensembl chr  X:20,524,558...20,623,410
JBrowse link
G Ppme1 protein phosphatase methylesterase 1 involved_in ISO
IBA
(PMID:10318862)
PMID:21873635
RGD PMID:10318862 PMID:21873635 RGD:13792537 NCBI chr 1:154,668,099...154,715,079
Ensembl chr 1:154,668,109...154,715,110
JBrowse link
G RGD1310212 similar to KIAA1111-like protein involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:12,194,437...12,200,509
Ensembl chr 7:12,194,441...12,200,446
JBrowse link
tRNA demethylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Alkbh1 alkB homolog 1, histone H2A dioxygenase involved_in ISO (PMID:27745969) RGD PMID:27745969 NCBI chr 6:107,068,309...107,088,779
Ensembl chr 6:107,068,475...107,088,759
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19492
    metabolic process 11795
      demethylation 74
        DNA demethylation + 29
        oxidative demethylation + 18
        protein demethylation + 33
paths to the root