Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   

ONTOLOGY REPORT - ANNOTATIONS


Term:demethylation
go back to main search page
Accession:GO:0070988 term browser browse the term
Definition:The process of removing one or more methyl groups from a molecule.


show annotations for term's descendants           Sort by:
 
demethylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cyp1a1 cytochrome P450, family 1, subfamily a, polypeptide 1 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 8:62,472,087...62,478,122
Ensembl chr 8:62,472,095...62,478,147
JBrowse link
G Cyp51 cytochrome P450, family 51 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 4:27,175,564...27,194,018
Ensembl chr 4:27,175,243...27,194,018
JBrowse link
G Mmachc metabolism of cobalamin associated C ISO (PMID:19801555) RGD PMID:19801555 NCBI chr 5:135,555,587...135,561,723
Ensembl chr 5:135,555,565...135,561,914
JBrowse link
G Por cytochrome p450 oxidoreductase IDA positive regulation of N-demethylation by cytochrome P450 2B4 RGD PMID:19171935 RGD:4889812 NCBI chr12:23,998,411...24,017,063
Ensembl chr12:23,998,411...24,046,814
JBrowse link
DNA demethylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aicda activation-induced cytidine deaminase ISO
IBA
(PMID:21496894)
PMID:21873635
RGD PMID:21496894, PMID:21873635 RGD:13792537 NCBI chr 4:155,359,909...155,371,104
Ensembl chr 4:155,359,921...155,369,671
JBrowse link
G Alkbh1 alkB homolog 1, histone H2A dioxygenase ISO (PMID:18603530), (PMID:30017583), (PMID:30392959) RGD PMID:18603530, PMID:30017583, PMID:30392959 NCBI chr 6:111,456,096...111,476,829
Ensembl chr 6:111,456,187...111,477,090
JBrowse link
G Alkbh4 alkB homolog 4, lysine demethylase ISO (MGI:6323482|PMID:30982744) RGD PMID:30982744 MGI:6323482 NCBI chr12:23,568,204...23,574,133
Ensembl chr12:23,568,094...23,574,125
JBrowse link
G Apex1 apurinic/apyrimidinic endodeoxyribonuclease 1 ISO
ISS
(PMID:21496894)
GO_REF:0000024
RGD
UniProt
PMID:21496894 GO_REF:0000024 NCBI chr15:27,849,943...27,852,083
Ensembl chr15:27,849,979...27,852,082
JBrowse link
G Apobec1 apolipoprotein B mRNA editing enzyme catalytic subunit 1 ISS
ISO
IBA
GO_REF:0000024
(MGI:5285126|PMID:21496894)
PMID:21873635
UniProt
RGD
PMID:21496894, PMID:21873635 GO_REF:0000024, MGI:5285126, RGD:13792537 NCBI chr 4:155,386,367...155,414,034
Ensembl chr 4:155,386,711...155,401,480
JBrowse link
G Apobec2 apolipoprotein B mRNA editing enzyme catalytic subunit 2 ISO
IBA
(PMID:21496894)
PMID:21873635
RGD PMID:21496894, PMID:21873635 RGD:13792537 NCBI chr 9:14,529,218...14,542,731
Ensembl chr 9:14,529,218...14,542,731
JBrowse link
G Apobec3 apolipoprotein B mRNA editing enzyme catalytic subunit 3 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:121,108,108...121,128,346
Ensembl chr 7:121,109,241...121,128,542
JBrowse link
G Fto FTO, alpha-ketoglutarate dependent dioxygenase ISO (PMID:18775698)
(MGI:3817348|PMID:18775698), (MGI:4430814|PMID:17991826)
RGD PMID:17991826, PMID:18775698 MGI:3817348, MGI:4430814 NCBI chr19:16,774,549...17,115,098
Ensembl chr19:16,772,744...17,115,113
JBrowse link
G Tdg thymine-DNA glycosylase ISO (MGI:5141157|PMID:21722948), (MGI:5287540|PMID:21817016), (MGI:5487523|PMID:21278727) RGD PMID:21278727, PMID:21722948, PMID:21817016 MGI:5141157, MGI:5287540, MGI:5487523 NCBI chr 7:27,194,000...27,213,676
Ensembl chr 7:27,193,998...27,214,236
JBrowse link
G Tet1 tet methylcytosine dioxygenase 1 ISO
IBA
(PMID:21496894)
(MGI:3844762|PMID:19372391), (MGI:4822076|PMID:20639862), (MGI:5285126|PMID:21496894)
PMID:21873635
RGD PMID:19372391, PMID:20639862, PMID:21496894, PMID:21873635 MGI:3844762, MGI:4822076, MGI:5285126, RGD:13792537 NCBI chr20:27,359,122...27,438,039
Ensembl chr20:27,366,213...27,437,427
JBrowse link
G Tet2 tet methylcytosine dioxygenase 2 ISO
IBA
(PMID:24315485)
(MGI:4822076|PMID:20639862)
PMID:21873635
RGD PMID:20639862, PMID:24315485, PMID:21873635 MGI:4822076, RGD:13792537 NCBI chr 2:238,719,389...238,802,975
Ensembl chr 2:238,720,835...238,803,024
JBrowse link
G Tet3 tet methylcytosine dioxygenase 3 IBA
ISO
PMID:21873635
(MGI:4822076|PMID:20639862), (MGI:5289702|PMID:21892189), (MGI:5432962|PMID:22722204), (MGI:5465527|PMID:21407207), (MGI:5525037|PMID:23690950)
RGD PMID:20639862, PMID:21407207, PMID:21892189, PMID:22722204, PMID:23690950, PMID:21873635 MGI:4822076, MGI:5289702, MGI:5432962, MGI:5465527, MGI:5525037, RGD:13792537 NCBI chr 4:115,060,702...115,160,800
Ensembl chr 4:115,066,309...115,157,263
JBrowse link
histone demethylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Kdm4a lysine demethylase 4A ISO (PMID:16024779) RGD PMID:16024779 NCBI chr 5:136,967,650...137,014,402
Ensembl chr 5:136,967,650...137,014,430
JBrowse link
G Kdm6b lysine demethylase 6B ISO (MGI:3764743|PMID:17928865) RGD PMID:17928865 MGI:3764743 NCBI chr10:56,000,494...56,009,582
Ensembl chr10:56,001,799...56,008,885
JBrowse link
histone H3-K27 demethylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Kdm6a lysine demethylase 6A ISO (MGI:5506833|PMID:23658530) RGD PMID:23658530 MGI:5506833 NCBI chr  X:4,805,493...4,945,788
Ensembl chr  X:4,806,277...4,945,944
JBrowse link
G Kdm6b lysine demethylase 6B ISO (PMID:28262558)
(MGI:3809360|PMID:18716661), (MGI:5574281|PMID:23856522)
RGD PMID:18716661, PMID:23856522, PMID:28262558 MGI:3809360, MGI:5574281 NCBI chr10:56,000,494...56,009,582
Ensembl chr10:56,001,799...56,008,885
JBrowse link
G Kdm7a lysine demethylase 7A ISO (PMID:20023638), (PMID:20194436), (PMID:20622853)
(MGI:4437342|PMID:20194436)
RGD PMID:20023638, PMID:20194436, PMID:20622853 MGI:4437342 NCBI chr 4:66,915,603...66,957,971
Ensembl chr 4:66,922,013...66,955,732
JBrowse link
G Pagr1 Paxip1-associated glutamate-rich protein 1 ISO (MGI:5448135|PMID:22949634) RGD PMID:22949634 MGI:5448135 NCBI chr 1:198,448,790...198,451,078
Ensembl chr 1:198,449,040...198,450,688
JBrowse link
G Phf8 PHD finger protein 8 ISO (PMID:20622853), (PMID:20622854) RGD PMID:20622853, PMID:20622854 NCBI chr  X:21,063,487...21,168,750
Ensembl chr  X:21,063,562...21,168,750
JBrowse link
histone H3-K36 demethylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Kdm2a lysine demethylase 2A ISO (PMID:20417597), (PMID:21187428), (PMID:28262558) RGD PMID:20417597, PMID:21187428, PMID:28262558 NCBI chr 1:219,566,130...219,642,294
Ensembl chr 1:219,566,156...219,640,294
JBrowse link
G Kdm2b lysine demethylase 2B ISO (PMID:26237645)
(MGI:5433809|PMID:21540074)
RGD PMID:21540074, PMID:26237645 MGI:5433809 NCBI chr12:39,021,924...39,161,954
Ensembl chr12:39,078,119...39,161,956
JBrowse link
G Kdm4a lysine demethylase 4A ISO (PMID:21914792) RGD PMID:21914792 NCBI chr 5:136,967,650...137,014,402
Ensembl chr 5:136,967,650...137,014,430
JBrowse link
G Kdm4b lysine demethylase 4B ISO (PMID:21914792)
(MGI:3629551|PMID:16738407)
RGD PMID:16738407, PMID:21914792 MGI:3629551 NCBI chr 9:10,656,035...10,734,127
Ensembl chr 9:10,653,216...10,734,073
JBrowse link
G Kdm4c lysine demethylase 4C ISO (PMID:21914792) RGD PMID:21914792 NCBI chr 5:90,800,139...91,012,662
Ensembl chr 5:90,800,082...91,012,659
JBrowse link
G Kdm7a lysine demethylase 7A ISO (PMID:20622853) RGD PMID:20622853 NCBI chr 4:66,915,603...66,957,971
Ensembl chr 4:66,922,013...66,955,732
JBrowse link
G Kdm8 lysine demethylase 8 IEA
IBA
ISS
ISO
GO_REF:0000107
PMID:21873635
GO_REF:0000024
(PMID:20457893)
Ensembl
UniProt
RGD
PMID:20457893, PMID:21873635 GO_REF:0000024, GO_REF:0000107, RGD:13792537 NCBI chr 1:196,838,460...196,854,192
Ensembl chr 1:196,839,321...196,854,180
JBrowse link
G Phf8 PHD finger protein 8 ISO (PMID:20208542), (PMID:20622853) RGD PMID:20208542, PMID:20622853 NCBI chr  X:21,063,487...21,168,750
Ensembl chr  X:21,063,562...21,168,750
JBrowse link
G Riox1 ribosomal oxygenase 1 IBA
ISO
PMID:21873635
(MGI:4418587|PMID:19927124)
RGD PMID:19927124, PMID:21873635 MGI:4418587, RGD:13792537 NCBI chr 6:107,428,508...107,431,126
Ensembl chr 6:107,428,508...107,431,116
JBrowse link
G Riox2 ribosomal oxygenase 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr11:43,006,190...43,028,722
Ensembl chr11:43,006,757...43,022,565
JBrowse link
histone H3-K4 demethylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Kdm1a lysine demethylase 1A IEP
ISO
IMP
(MGI:5562615|PMID:24217620), (MGI:5574544|PMID:24843136)
(PMID:15620353), (PMID:20228790), (PMID:24217620)
RGD PMID:15620353, PMID:20228790, PMID:24217620, PMID:24843136, PMID:23221071, PMID:20418916 MGI:5562615, MGI:5574544, RGD:9588312, RGD:9588315 NCBI chr 5:154,909,003...154,965,171
Ensembl chr 5:154,909,003...154,965,171
JBrowse link
G Kdm1b lysine demethylase 1B ISO (PMID:23266887)
(MGI:4352982|PMID:19407342), (MGI:4358629|PMID:19727073)
RGD PMID:19407342, PMID:19727073, PMID:23266887 MGI:4352982, MGI:4358629 NCBI chr17:17,987,972...18,028,808
Ensembl chr17:17,987,972...18,028,808
JBrowse link
G Kdm5a lysine demethylase 5A IEP
ISO
(MGI:3789777|PMID:18483221)
(PMID:18270511)
RGD PMID:18270511, PMID:18483221, PMID:24679876 MGI:3789777, RGD:9588526 NCBI chr 4:152,892,388...152,972,196
Ensembl chr 4:152,892,388...152,972,201
JBrowse link
G Kdm5b lysine demethylase 5B ISO (PMID:20228790), (PMID:24952722), (PMID:27214403), (PMID:28262558)
(MGI:3715069|PMID:17320160)
RGD PMID:17320160, PMID:20228790, PMID:24952722, PMID:27214403, PMID:28262558 MGI:3715069 NCBI chr13:51,384,371...51,455,392
Ensembl chr13:51,384,389...51,455,357
JBrowse link
G Kdm5c lysine demethylase 5C ISO (PMID:17320160), (PMID:28262558)
(MGI:5528429|PMID:23246292)
RGD PMID:17320160, PMID:23246292, PMID:28262558 MGI:5528429 NCBI chr  X:22,302,664...22,349,298
Ensembl chr  X:22,302,485...22,348,627
JBrowse link
G Kdm5d lysine demethylase 5D ISO (PMID:17320160) RGD PMID:17320160 NCBI chr  Y:501,058...589,267
Ensembl chr  Y:505,996...589,267
JBrowse link
G Riox1 ribosomal oxygenase 1 IBA
ISO
PMID:21873635
(MGI:4418587|PMID:19927124)
RGD PMID:19927124, PMID:21873635 MGI:4418587, RGD:13792537 NCBI chr 6:107,428,508...107,431,126
Ensembl chr 6:107,428,508...107,431,116
JBrowse link
G Riox2 ribosomal oxygenase 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr11:43,006,190...43,028,722
Ensembl chr11:43,006,757...43,022,565
JBrowse link
histone H3-K4 demethylation, trimethyl-H3-K4-specific term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Jarid2 jumonji and AT-rich interaction domain containing 2 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr17:20,183,440...20,365,219
Ensembl chr17:20,184,245...20,364,714
JBrowse link
G Kdm1b lysine demethylase 1B IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr17:17,987,972...18,028,808
Ensembl chr17:17,987,972...18,028,808
JBrowse link
G Kdm5a lysine demethylase 5A IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 4:152,892,388...152,972,196
Ensembl chr 4:152,892,388...152,972,201
JBrowse link
G Kdm5b lysine demethylase 5B IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr13:51,384,371...51,455,392
Ensembl chr13:51,384,389...51,455,357
JBrowse link
G Kdm5c lysine demethylase 5C IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr  X:22,302,664...22,349,298
Ensembl chr  X:22,302,485...22,348,627
JBrowse link
G Kdm5d lysine demethylase 5D IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr  Y:501,058...589,267
Ensembl chr  Y:505,996...589,267
JBrowse link
histone H3-K9 demethylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hr HR, lysine demethylase and nuclear receptor corepressor IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr15:52,241,801...52,261,276
Ensembl chr15:52,241,801...52,261,276
JBrowse link
G Hsf4 heat shock transcription factor 4 ISO (MGI:3821682|PMID:18755693) RGD PMID:18755693 MGI:3821682 NCBI chr19:37,225,800...37,232,048
Ensembl chr19:37,226,186...37,231,912
JBrowse link
G Jmjd1c jumonji domain containing 1C IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr20:22,751,743...22,914,080
Ensembl chr20:22,751,743...22,882,672
JBrowse link
G Kdm1a lysine demethylase 1A ISO (PMID:16079795), (PMID:20228790)
(MGI:4838688|PMID:20833138)
RGD PMID:16079795, PMID:20228790, PMID:20833138 MGI:4838688 NCBI chr 5:154,909,003...154,965,171
Ensembl chr 5:154,909,003...154,965,171
JBrowse link
G Kdm3a lysine demethylase 3A IEA
ISO
IBA
GO_REF:0000107
(MGI:3759699|PMID:17938240)
PMID:21873635
(PMID:16603237), (PMID:28262558)
Ensembl
RGD
PMID:16603237, PMID:17938240, PMID:28262558, PMID:21873635 GO_REF:0000107, MGI:3759699, RGD:13792537 NCBI chr 4:99,503,160...99,547,315
Ensembl chr 4:99,503,176...99,546,905
JBrowse link
G Kdm3b lysine demethylase 3B IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr18:27,593,823...27,631,129
Ensembl chr18:27,576,129...27,631,088
JBrowse link
G Kdm4a lysine demethylase 4A ISO (PMID:21914792) RGD PMID:21914792 NCBI chr 5:136,967,650...137,014,402
Ensembl chr 5:136,967,650...137,014,430
JBrowse link
G Kdm4b lysine demethylase 4B ISO (PMID:21914792), (PMID:28262558)
(MGI:3629551|PMID:16738407)
RGD PMID:16738407, PMID:21914792, PMID:28262558 MGI:3629551 NCBI chr 9:10,656,035...10,734,127
Ensembl chr 9:10,653,216...10,734,073
JBrowse link
G Kdm4c lysine demethylase 4C ISO (PMID:17277772), (PMID:18066052), (PMID:21914792), (PMID:28262558)
(MGI:3759699|PMID:17938240)
RGD PMID:17277772, PMID:17938240, PMID:18066052, PMID:21914792, PMID:28262558 MGI:3759699 NCBI chr 5:90,800,139...91,012,662
Ensembl chr 5:90,800,082...91,012,659
JBrowse link
G Kdm4d lysine demethylase 4D ISO (PMID:21914792), (PMID:25124442)
MGI:5051955 (MGI:5050032|PMID:21293030), (MGI:5552986|PMID:24550317)
RGD PMID:21293030, PMID:21914792, PMID:24550317, PMID:25124442 MGI:5050032, MGI:5552986 NCBI chr 8:12,968,192...12,993,651
Ensembl chr 8:13,511,805...13,513,337
JBrowse link
G Kdm7a lysine demethylase 7A ISO (PMID:20023638), (PMID:20194436), (PMID:20622853)
(MGI:4437342|PMID:20194436)
RGD PMID:20023638, PMID:20194436, PMID:20622853 MGI:4437342 NCBI chr 4:66,915,603...66,957,971
Ensembl chr 4:66,922,013...66,955,732
JBrowse link
G Phf2 PHD finger protein 2 ISO (MGI:4818540|PMID:20129925) RGD PMID:20129925 MGI:4818540 NCBI chr17:16,240,458...16,274,626
Ensembl chr17:16,204,427...16,274,624
JBrowse link
G Phf8 PHD finger protein 8 ISO (PMID:20023638), (PMID:20208542), (PMID:20346720), (PMID:20622853), (PMID:20622854) RGD PMID:20023638, PMID:20208542, PMID:20346720, PMID:20622853, PMID:20622854 NCBI chr  X:21,063,487...21,168,750
Ensembl chr  X:21,063,562...21,168,750
JBrowse link
histone H3-R2 demethylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Jmjd6 jumonji domain containing 6, arginine demethylase and lysine hydroxylase NOT ISO (PMID:17947579)
(PMID:22189873)
RGD PMID:17947579, PMID:22189873 NCBI chr10:105,781,752...105,787,803
Ensembl chr10:105,781,753...105,787,803
JBrowse link
histone H4-K20 demethylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Kdm7a lysine demethylase 7A ISO (PMID:20622853) RGD PMID:20622853 NCBI chr 4:66,915,603...66,957,971
Ensembl chr 4:66,922,013...66,955,732
JBrowse link
G Phf8 PHD finger protein 8 ISO (PMID:20622853), (PMID:20622854) RGD PMID:20622853, PMID:20622854 NCBI chr  X:21,063,487...21,168,750
Ensembl chr  X:21,063,562...21,168,750
JBrowse link
histone H4-R3 demethylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Jmjd6 jumonji domain containing 6, arginine demethylase and lysine hydroxylase NOT ISS
ISO
GO_REF:0000024
(PMID:22189873)
(PMID:17947579), (PMID:24360279), (PMID:24498420)
UniProt
RGD
PMID:17947579, PMID:22189873, PMID:24360279, PMID:24498420 GO_REF:0000024 NCBI chr10:105,781,752...105,787,803
Ensembl chr10:105,781,753...105,787,803
JBrowse link
histone lysine demethylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ube2b ubiquitin-conjugating enzyme E2B ISO MGI:2183933 (MGI:3720437|PMID:17488778) RGD PMID:17488778 MGI:3720437 NCBI chr10:37,439,947...37,454,867
Ensembl chr10:37,441,284...37,455,022
JBrowse link
negative regulation of DNA demethylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07015759.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr14:74,094,670...74,095,146 JBrowse link
G AABR07017902.2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr15:32,412,245...32,412,709 JBrowse link
G AABR07026842.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr17:2,920,610...2,921,083 JBrowse link
G AABR07058017.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 7:98,734,716...98,735,192 JBrowse link
G AABR07061871.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 4:150,199,627...150,200,088 JBrowse link
G Dppa3 developmental pluripotency-associated 3 ISS
ISO
IBA
GO_REF:0000024
(MGI:5432962|PMID:22722204), (MGI:5447615|PMID:17143267), (MGI:5465527|PMID:21407207)
PMID:21873635
UniProt
RGD
PMID:17143267, PMID:21407207, PMID:22722204, PMID:21873635 GO_REF:0000024, MGI:5432962, MGI:5447615, MGI:5465527, RGD:13792537 NCBI chr 4:155,437,675...155,441,059
Ensembl chr 3:111,298,713...111,299,189
Ensembl chr 4:111,298,713...111,299,189
JBrowse link
G Dppa3l1 developmental pluripotency associated 3-like 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:60,683,180...60,683,658
Ensembl chr 8:60,683,183...60,683,632
JBrowse link
G Gata3 GATA binding protein 3 ISO (MGI:3046385|PMID:15087456) RGD PMID:15087456 MGI:3046385 NCBI chr17:72,419,752...72,452,043
Ensembl chr17:72,429,618...72,450,681
JBrowse link
G LOC679766 similar to developmental pluripotency-associated 3 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr14:74,094,652...74,095,296 JBrowse link
G Trim28 tripartite motif-containing 28 ISO MGI:1928907 (MGI:5319411|PMID:22495301) RGD PMID:22495301 MGI:5319411 NCBI chr 1:65,544,369...65,551,043
Ensembl chr 1:65,544,373...65,551,043
JBrowse link
oxidative demethylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Alkbh1 alkB homolog 1, histone H2A dioxygenase ISO (PMID:18603530) RGD PMID:18603530 NCBI chr 6:111,456,096...111,476,829
Ensembl chr 6:111,456,187...111,477,090
JBrowse link
G Alkbh4 alkB homolog 4, lysine demethylase IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr12:23,568,204...23,574,133
Ensembl chr12:23,568,094...23,574,125
JBrowse link
G Cyp1a2 cytochrome P450, family 1, subfamily a, polypeptide 2 ISO (PMID:18619574) RGD PMID:18619574 NCBI chr 8:62,451,360...62,458,244
Ensembl chr 8:62,451,329...62,458,301
JBrowse link
G Cyp2c79 cytochrome P450, family 2, subfamily c, polypeptide 79 ISO (PMID:18619574) RGD PMID:18619574 NCBI chr 1:147,236,480...147,307,988 JBrowse link
G Cyp2d4 cytochrome P450, family 2, subfamily d, polypeptide 4 ISO (PMID:15039299), (PMID:19438707) RGD PMID:15039299, PMID:19438707 NCBI chr 7:123,599,264...123,608,436
Ensembl chr 7:123,599,266...123,608,436
JBrowse link
G Cyp3a18 cytochrome P450, family 3, subfamily a, polypeptide 18 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr12:10,636,294...10,684,273
Ensembl chr12:10,636,275...10,684,278
JBrowse link
G Cyp3a2 cytochrome P450, family 3, subfamily a, polypeptide 2 IDA
IBA
PMID:21873635 RGD
GO_Central
PMID:12971802, PMID:21873635 RGD:5129544, RGD:13792537 NCBI chr12:11,641,500...11,677,818
Ensembl chr12:11,655,402...11,733,136
JBrowse link
G Cyp3a23-3a1 cytochrome P450, family 3, subfamily a, polypeptide 23-polypeptide 1 IDA
IBA
PMID:21873635 RGD
GO_Central
PMID:12971802, PMID:21873635 RGD:5129544, RGD:13792537 NCBI chr12:11,053,888...11,082,742
Ensembl chr12:11,655,402...11,733,136
JBrowse link
G Cyp3a62 cytochrome P450, family 3, subfamily a, polypeptide 62 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr12:18,679,809...18,709,397
Ensembl chr12:18,678,594...18,709,397
JBrowse link
G Cyp3a9 cytochrome P450, family 3, subfamily a, polypeptide 9 ISO
IBA
(PMID:15039299)
PMID:21873635
RGD PMID:15039299, PMID:21873635 RGD:13792537 NCBI chr12:19,074,288...19,114,491
Ensembl chr12:19,074,583...19,114,399
JBrowse link
G Fto FTO, alpha-ketoglutarate dependent dioxygenase ISO (PMID:18775698)
(MGI:3817348|PMID:18775698)
RGD PMID:18775698 MGI:3817348 NCBI chr19:16,774,549...17,115,098
Ensembl chr19:16,772,744...17,115,113
JBrowse link
G Tet1 tet methylcytosine dioxygenase 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr20:27,359,122...27,438,039
Ensembl chr20:27,366,213...27,437,427
JBrowse link
G Tet2 tet methylcytosine dioxygenase 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:238,719,389...238,802,975
Ensembl chr 2:238,720,835...238,803,024
JBrowse link
G Tet3 tet methylcytosine dioxygenase 3 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:115,060,702...115,160,800
Ensembl chr 4:115,066,309...115,157,263
JBrowse link
oxidative DNA demethylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Alkbh1 alkB homolog 1, histone H2A dioxygenase IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 6:111,456,096...111,476,829
Ensembl chr 6:111,456,187...111,477,090
JBrowse link
G Alkbh2 alkB homolog 2, alpha-ketoglutarate-dependent dioxygenase ISO
IBA
(PMID:18432238)
PMID:21873635
RGD PMID:18432238, PMID:21873635 RGD:13792537 NCBI chr12:48,257,575...48,262,244
Ensembl chr12:48,257,609...48,262,243
JBrowse link
G Alkbh4 alkB homolog 4, lysine demethylase IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr12:23,568,204...23,574,133
Ensembl chr12:23,568,094...23,574,125
JBrowse link
oxidative RNA demethylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Alkbh1 alkB homolog 1, histone H2A dioxygenase ISO (PMID:31188562) RGD PMID:31188562 NCBI chr 6:111,456,096...111,476,829
Ensembl chr 6:111,456,187...111,477,090
JBrowse link
G Jmjd6 jumonji domain containing 6, arginine demethylase and lysine hydroxylase ISS
ISO
GO_REF:0000024
(PMID:24360279)
UniProt
RGD
PMID:24360279 GO_REF:0000024 NCBI chr10:105,781,752...105,787,803
Ensembl chr10:105,781,753...105,787,803
JBrowse link
oxidative single-stranded DNA demethylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Alkbh3 alkB homolog 3, alpha-ketoglutarate-dependent dioxygenase ISS
ISO
GO_REF:0000024
(PMID:16858410), (PMID:22055184)
UniProt
RGD
PMID:16858410, PMID:22055184 GO_REF:0000024 NCBI chr 3:82,874,242...82,907,467
Ensembl chr 3:82,874,248...82,906,581
JBrowse link
G Fto FTO, alpha-ketoglutarate dependent dioxygenase IEA
ISO
IBA
ISS
GO_REF:0000107
(MGI:3817348|PMID:18775698)
PMID:21873635
(PMID:18775698), (PMID:20376003)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:18775698, PMID:20376003, PMID:21873635 GO_REF:0000024, GO_REF:0000107, MGI:3817348, RGD:13792537 NCBI chr19:16,774,549...17,115,098
Ensembl chr19:16,772,744...17,115,113
JBrowse link
oxidative single-stranded RNA demethylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Alkbh3 alkB homolog 3, alpha-ketoglutarate-dependent dioxygenase ISO (PMID:26863196), (PMID:26863410) RGD PMID:26863196, PMID:26863410 NCBI chr 3:82,874,242...82,907,467
Ensembl chr 3:82,874,248...82,906,581
JBrowse link
G Alkbh5 alkB homolog 5, RNA demethylase ISS
ISO
IBA
GO_REF:0000024
(MGI:6111276|PMID:29279410)
(PMID:23177736), (PMID:24616105)
PMID:21873635
UniProt
RGD
PMID:23177736, PMID:24616105, PMID:29279410, PMID:21873635 GO_REF:0000024, MGI:6111276, RGD:13792537 NCBI chr10:46,906,314...46,927,759
Ensembl chr10:46,906,115...46,930,579
JBrowse link
G Fto FTO, alpha-ketoglutarate dependent dioxygenase IEA
ISO
IBA
ISS
GO_REF:0000107
(MGI:3817348|PMID:18775698)
PMID:21873635
(PMID:18775698), (PMID:22002720), (PMID:25452335), (PMID:26457839), (PMID:26458103), (PMID:28002401), (PMID:30197295)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:18775698, PMID:22002720, PMID:25452335, PMID:26457839, PMID:26458103, PMID:28002401, PMID:30197295, PMID:21873635 GO_REF:0000024, GO_REF:0000107, MGI:3817348, RGD:13792537 NCBI chr19:16,774,549...17,115,098
Ensembl chr19:16,772,744...17,115,113
JBrowse link
positive regulation of DNA demethylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Otud4 OTU deubiquitinase 4 ISO (PMID:25944111) RGD PMID:25944111 NCBI chr19:31,895,753...31,942,509
Ensembl chr19:31,899,087...31,942,180
JBrowse link
G Stpg4 sperm-tail PG-rich repeat containing 4 IBA
ISO
PMID:21873635
(MGI:5762940|PMID:23560077)
RGD PMID:23560077, PMID:21873635 MGI:5762940, RGD:13792537 NCBI chr 6:11,014,596...11,063,509
Ensembl chr 6:11,022,034...11,063,092
JBrowse link
G Tox thymocyte selection-associated high mobility group box ISO (MGI:3045816|PMID:15078895) RGD PMID:15078895 MGI:3045816 NCBI chr 5:19,892,698...20,189,721
Ensembl chr 5:19,892,698...20,189,721
JBrowse link
G Usp7 ubiquitin specific peptidase 7 ISS
ISO
IEA
GO_REF:0000024
(PMID:25944111)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:25944111 GO_REF:0000024, GO_REF:0000107 NCBI chr10:6,930,462...7,019,910
Ensembl chr10:6,975,244...7,018,930
JBrowse link
G Usp9x ubiquitin specific peptidase 9, X-linked ISO (PMID:25944111) RGD PMID:25944111 NCBI chr  X:10,510,033...10,660,555
Ensembl chr  X:10,510,033...10,630,297
JBrowse link
protein demethylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Alkbh4 alkB homolog 4, lysine demethylase ISO
IBA
(PMID:23673617)
PMID:21873635
RGD PMID:23673617, PMID:21873635 RGD:13792537 NCBI chr12:23,568,204...23,574,133
Ensembl chr12:23,568,094...23,574,125
JBrowse link
G Jmjd6 jumonji domain containing 6, arginine demethylase and lysine hydroxylase ISS
ISO
GO_REF:0000024
(PMID:24498420)
UniProt
RGD
PMID:24498420 GO_REF:0000024 NCBI chr10:105,781,752...105,787,803
Ensembl chr10:105,781,753...105,787,803
JBrowse link
G Kdm1a lysine demethylase 1A ISO (PMID:17805299) RGD PMID:17805299 NCBI chr 5:154,909,003...154,965,171
Ensembl chr 5:154,909,003...154,965,171
JBrowse link
G Phf2 PHD finger protein 2 ISO (PMID:21532585) RGD PMID:21532585 NCBI chr17:16,240,458...16,274,626
Ensembl chr17:16,204,427...16,274,624
JBrowse link
G Ppme1 protein phosphatase methylesterase 1 ISO
IBA
(PMID:10318862)
PMID:21873635
RGD PMID:10318862, PMID:21873635 RGD:13792537 NCBI chr 1:165,335,242...165,382,216
Ensembl chr 1:165,335,242...165,382,216
JBrowse link
tRNA demethylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Alkbh1 alkB homolog 1, histone H2A dioxygenase ISO (PMID:27745969) RGD PMID:27745969 NCBI chr 6:111,456,096...111,476,829
Ensembl chr 6:111,456,187...111,477,090
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20020
    metabolic process 12263
      demethylation 72
        DNA demethylation + 29
        oxidative demethylation + 18
        protein demethylation + 31
paths to the root

NHLBI Logo

RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.