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ONTOLOGY REPORT - ANNOTATIONS

Term:3'-UTR-mediated mRNA stabilization
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Accession:GO:0070935 term browser browse the term
Definition:An mRNA stabilization process in which one or more RNA-binding proteins associate with the 3'-untranslated region (UTR) of an mRNA.
Synonyms:exact_synonym: 3'-untranslated region-mediated mRNA stabilization


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3'-UTR-mediated mRNA stabilization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ANGEL2 angel homolog 2 involved_in IEA
IBA		 Ensembl
TreeGrafter
GO_Central		 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 NCBI chr 9:130,453,912...130,476,383
Ensembl chr 9:130,453,920...130,474,921 		JBrowse link
G BOLL boule homolog, RNA binding protein involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr15:101,535,392...101,602,232
Ensembl chr15:101,535,705...101,602,232 		JBrowse link
G DAZL deleted in azoospermia like involved_in IBA
IEA		 GO_Central
TreeGrafter		 GO_REF:0000033 GO_REF:0000118 NCBI chr13:3,762,896...3,783,848
Ensembl chr13:3,764,784...3,782,818 		JBrowse link
G ELAVL1 ELAV like RNA binding protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 2:71,207,141...71,245,863
Ensembl chr 2:71,207,096...71,248,906 		JBrowse link
G ELAVL4 ELAV like RNA binding protein 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:161,784,146...161,928,953
Ensembl chr 6:161,785,770...161,928,910 		JBrowse link
G HNRNPA0 heterogeneous nuclear ribonucleoprotein A0 involved_in ISO (MGI:5306322|PMID:12456657) UniProt PMID:12456657 MGI:5306322 NCBI chr 2:139,779,865...139,783,016
Ensembl chr 2:139,779,867...139,783,159 		JBrowse link
G HNRNPC heterogeneous nuclear ribonucleoprotein C involved_in ISO (PMID:16010978) UniProt PMID:16010978 NCBI chr 7:77,921,098...77,978,550
Ensembl chr 7:77,921,145...77,973,078 		JBrowse link
G MAPKAPK2 MAPK activated protein kinase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:67,314,651...67,365,060
Ensembl chr 9:67,314,484...67,365,059 		JBrowse link
G MYD88 MYD88 innate immune signal transduction adaptor involved_in IEA Ensembl GO_REF:0000107 NCBI chr13:22,976,951...22,979,568
Ensembl chr13:22,966,137...22,983,109 		JBrowse link
G PCBP2 poly(rC) binding protein 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 5:18,670,124...18,703,745
Ensembl chr 5:18,673,981...18,704,978 		JBrowse link
G PTBP1 polypyrimidine tract binding protein 1 ISO RGD PMID:11696543 RGD:10045987 NCBI chr 2:77,551,562...77,563,153
Ensembl chr 2:77,551,562...77,563,134 		JBrowse link
G RBM10 RNA binding motif protein 10 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19508861) Ensembl
MGI		 PMID:19508861 GO_REF:0000107 NCBI chr  X:41,773,232...41,803,656
Ensembl chr  X:41,773,232...41,803,653 		JBrowse link
G RBM38 RNA binding motif protein 38 involved_in ISO (PMID:17050675) UniProt PMID:17050675 NCBI chr17:57,783,156...57,802,495
Ensembl chr17:57,783,154...57,797,990 		JBrowse link
G RBM47 RNA binding motif protein 47 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:31,508,133...31,690,757
Ensembl chr 8:31,508,148...31,690,409 		JBrowse link
G TARDBP TAR DNA binding protein involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:71,213,584...71,227,707
Ensembl chr 6:71,213,860...71,227,704 		JBrowse link
G TIRAP TIR domain containing adaptor protein involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:53,374,559...53,394,172
Ensembl chr 9:53,375,644...53,394,165 		JBrowse link
G ZFP36 ZFP36 ring finger protein involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:48,063,732...48,066,235
Ensembl chr 6:48,063,677...48,066,250 		JBrowse link
negative regulation of 3'-UTR-mediated mRNA stabilization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G METTL16 methyltransferase 16, RNA N6-adenosine involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:48,491,254...48,567,253
Ensembl chr12:48,499,240...48,561,536 		JBrowse link
G QKI QKI, KH domain containing RNA binding involved_in IEA
ISS		 Ensembl
UniProt		 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:4,732,575...4,883,386
Ensembl chr 1:4,735,514...4,883,392 		JBrowse link
positive regulation of 3'-UTR-mediated mRNA stabilization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ELAVL4 ELAV like RNA binding protein 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:161,784,146...161,928,953
Ensembl chr 6:161,785,770...161,928,910 		JBrowse link
G LARP4B La ribonucleoprotein 4B involved_in ISO (PMID:26001795) FlyBase PMID:26001795 NCBI chr10:68,621,596...68,707,894 JBrowse link
G QKI QKI, KH domain containing RNA binding involved_in ISO (MGI:5903342|PMID:28188285) UniProt PMID:28188285 MGI:5903342 NCBI chr 1:4,732,575...4,883,386
Ensembl chr 1:4,735,514...4,883,392 		JBrowse link
G RBM24 RNA binding motif protein 24 involved_in ISO (PMID:24356969) UniProt PMID:24356969 NCBI chr 7:13,126,518...13,139,504 JBrowse link
G TENT4A terminal nucleotidyltransferase 4A involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:75,217,212...75,259,805
Ensembl chr16:75,217,219...75,258,556 		JBrowse link
G TENT4B terminal nucleotidyltransferase 4B involved_in ISO (PMID:30026317) UniProt PMID:30026317 NCBI chr 6:34,603,157...34,669,779
Ensembl chr 6:34,605,529...34,669,278 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 17813
    biological regulation 12832
      regulation of biological quality 3205
        regulation of RNA stability 243
          regulation of mRNA stability 230
            mRNA stabilization 66
              3'-UTR-mediated mRNA stabilization 23
                negative regulation of 3'-UTR-mediated mRNA stabilization 2
                positive regulation of 3'-UTR-mediated mRNA stabilization 6
                regulation of 3'-UTR-mediated mRNA stabilization + 7
Path 2
Term Annotations click to browse term
  biological_process 17813
    biological regulation 12832
      regulation of biological process 12482
        regulation of metabolic process 6171
          regulation of biosynthetic process 5035
            regulation of cellular biosynthetic process 4985
              regulation of macromolecule biosynthetic process 4850
                regulation of gene expression 4734
                  negative regulation of gene expression 1325
                    mRNA catabolic process 310
                      regulation of mRNA catabolic process 247
                        regulation of mRNA stability 230
                          mRNA stabilization 66
                            3'-UTR-mediated mRNA stabilization 23
                              negative regulation of 3'-UTR-mediated mRNA stabilization 2
                              positive regulation of 3'-UTR-mediated mRNA stabilization 6
                              regulation of 3'-UTR-mediated mRNA stabilization + 7
paths to the root