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ONTOLOGY REPORT - ANNOTATIONS

Term:regulatory ncRNA processing
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Accession:GO:0070918 term browser browse the term
Definition:A process leading to the generation of a functional regulatory non-coding RNA.
Synonyms:narrow_synonym: gene silencing by RNA, production of guide RNA;   gene silencing by RNA, production of small RNA;   primary sncRNA processing;   small regulatory ncRNA processing
 related_synonym: production of small RNA involved in gene silencing by RNA;   small regulatory ncRNA maturation;   sncRNA processing;   sncRNA production
 alt_id: GO:0031051


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miRNA processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ADAR adenosine deaminase RNA specific involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:23622242) Ensembl
MGI		 PMID:23622242 GO_REF:0000107 NCBI chr 1:154,582,057...154,627,997
Ensembl chr 1:154,581,695...154,628,013 		JBrowse link
G AGO1 argonaute RISC component 1 involved_in IMP (PMID:22795694) BHF-UCL PMID:22795694 NCBI chr 1:35,869,761...35,930,532
Ensembl chr 1:35,869,808...35,930,532 		JBrowse link
G AGO2 argonaute RISC catalytic component 2 involved_in
acts_upstream_of_or_within		 IDA
ISO
IEA		 (PMID:19966796), (PMID:23661684)
(PMID:20424607)		 BHF-UCL
MGI
Ensembl		 PMID:19966796 PMID:20424607 PMID:23661684 GO_REF:0000107 NCBI chr 8:140,520,156...140,642,313
Ensembl chr 8:140,520,156...140,635,633 		JBrowse link
G AGO3 argonaute RISC catalytic component 3 involved_in IMP (PMID:22795694) BHF-UCL PMID:22795694 NCBI chr 1:35,930,718...36,072,500
Ensembl chr 1:35,930,718...36,072,500 		JBrowse link
G AGO4 argonaute RISC component 4 involved_in IMP (PMID:22795694) BHF-UCL PMID:22795694 NCBI chr 1:35,807,636...35,857,890
Ensembl chr 1:35,808,016...35,857,890 		JBrowse link
G DICER1 dicer 1, ribonuclease III involved_in
acts_upstream_of_or_within		 IMP
ISO
ISS
IDA		 (PMID:23322395), (PMID:26435691)
(PMID:15713842)
(PMID:16040801)
(PMID:16462742)
(PMID:15973356), (PMID:23661684)		 ARUK-UCL
MGI
BHF-UCL
UniProt		 PMID:15713842 PMID:15973356 PMID:16040801 PMID:16462742 PMID:23322395 More... GO_REF:0000024 NCBI chr14:95,086,228...95,158,010
Ensembl chr14:95,086,228...95,158,010 		JBrowse link
G NUP155 nucleoporin 155 involved_in
acts_upstream_of_or_within_positive_effect		 IEA
ISO		 (PMID:31481660) Ensembl
MGI		 PMID:31481660 GO_REF:0000107 NCBI chr 5:37,288,137...37,371,106
Ensembl chr 5:37,288,137...37,371,106 		JBrowse link
G PPP1R8 protein phosphatase 1 regulatory subunit 8 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 1:27,830,782...27,851,676
Ensembl chr 1:27,830,782...27,851,676 		JBrowse link
G PRKRA protein activator of interferon induced protein kinase EIF2AK2 involved_in IDA (PMID:23661684) ComplexPortal PMID:23661684 NCBI chr 2:178,431,414...178,451,175
Ensembl chr 2:178,431,292...178,451,512 		JBrowse link
G PUM1 pumilio RNA binding family member 1 involved_in IMP
IEA
IBA		 (PMID:28431233) UniProt
TreeGrafter
GO_Central		 PMID:28431233 GO_REF:0000033 GO_REF:0000118 NCBI chr 1:30,931,506...31,065,717
Ensembl chr 1:30,931,506...31,065,991 		JBrowse link
G PUM2 pumilio RNA binding family member 2 involved_in IMP
IBA
IEA		 (PMID:28431233) UniProt
GO_Central
TreeGrafter		 PMID:28431233 GO_REF:0000033 GO_REF:0000118 NCBI chr 2:20,248,691...20,352,253
Ensembl chr 2:20,248,691...20,352,234 		JBrowse link
G RBM3 RNA binding motif protein 3 acts_upstream_of_or_within ISO (PMID:15684048) MGI PMID:15684048 NCBI chr  X:48,574,484...48,581,162
Ensembl chr  X:48,574,449...48,581,162 		JBrowse link
G SLC4A1AP solute carrier family 4 member 1 adaptor protein involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 2:27,663,889...27,694,969
Ensembl chr 2:27,663,426...27,695,366 		JBrowse link
G SNIP1 Smad nuclear interacting protein 1 involved_in IMP
IEA
IBA		 (PMID:18632581) UniProt
TreeGrafter
GO_Central		 PMID:18632581 GO_REF:0000033 GO_REF:0000118 NCBI chr 1:37,534,449...37,554,293
Ensembl chr 1:37,534,449...37,554,293 		JBrowse link
G SPOUT1 SPOUT domain containing methyltransferase 1 involved_in IMP
IBA
IEA		 (PMID:28431233) UniProt
GO_Central
TreeGrafter		 PMID:28431233 GO_REF:0000033 GO_REF:0000118 NCBI chr 9:128,819,651...128,829,794
Ensembl chr 9:128,819,651...128,829,794 		JBrowse link
G TARBP2 TARBP2 subunit of RISC loading complex involved_in IDA (PMID:15973356), (PMID:23661684) ComplexPortal PMID:15973356 PMID:23661684 NCBI chr12:53,500,923...53,506,431
Ensembl chr12:53,500,921...53,506,431 		JBrowse link
G TRIM71 tripartite motif containing 71 involved_in IMP (PMID:28431233) UniProt PMID:28431233 NCBI chr 3:32,817,997...32,897,824
Ensembl chr 3:32,817,997...32,897,824 		JBrowse link
G ZC3H7A zinc finger CCCH-type containing 7A involved_in IMP
IEA
IBA		 (PMID:28431233) UniProt
TreeGrafter
GO_Central		 PMID:28431233 GO_REF:0000033 GO_REF:0000118 NCBI chr16:11,750,597...11,797,258
Ensembl chr16:11,750,586...11,797,258 		JBrowse link
G ZC3H7B zinc finger CCCH-type containing 7B involved_in IMP
IEA
IBA		 (PMID:28431233) UniProt
TreeGrafter
GO_Central		 PMID:28431233 GO_REF:0000033 GO_REF:0000118 NCBI chr22:41,301,525...41,360,147
Ensembl chr22:41,301,525...41,360,147 		JBrowse link
negative regulation of miRNA processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HNF1A HNF1 homeobox A involved_in ISO
IEA		 RGD
Ensembl		 PMID:23674172 GO_REF:0000107 RGD:150540303 NCBI chr12:120,978,543...121,002,512
Ensembl chr12:120,978,543...121,002,512 		JBrowse link
G TP53 tumor protein p53 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:21522133) Ensembl
MGI		 PMID:21522133 GO_REF:0000107 NCBI chr17:7,668,421...7,687,490
Ensembl chr17:7,661,779...7,687,538 		JBrowse link
G ZC3H10 zinc finger CCCH-type containing 10 involved_in IDA (PMID:28431233) UniProt PMID:28431233 NCBI chr12:56,118,266...56,127,514
Ensembl chr12:56,118,260...56,127,514 		JBrowse link
G ZMPSTE24 zinc metallopeptidase STE24 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:21522133) Ensembl
MGI		 PMID:21522133 GO_REF:0000107 NCBI chr 1:40,258,236...40,294,180
Ensembl chr 1:40,258,041...40,294,180 		JBrowse link
negative regulation of pre-miRNA processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BCDIN3D BCDIN3 domain containing RNA methyltransferase involved_in IDA
IBA
IEA		 (PMID:23063121) UniProt
GO_Central
TreeGrafter		 PMID:23063121 GO_REF:0000033 GO_REF:0000118 NCBI chr12:49,836,043...49,843,106
Ensembl chr12:49,836,043...49,843,106 		JBrowse link
G HOXB-AS3 HOXB cluster antisense RNA 3 involved_in IDA (PMID:28985503) UniProt PMID:28985503 NCBI chr17:48,590,420...48,606,414
Ensembl chr17:48,549,630...48,606,414 		JBrowse link
G LIN28A lin-28 homolog A involved_in IDA (PMID:21247876) UniProt PMID:21247876 NCBI chr 1:26,410,817...26,429,728
Ensembl chr 1:26,410,817...26,429,728 		JBrowse link
G LIN28B lin-28 homolog B involved_in IDA (PMID:18951094) CACAO PMID:18951094 NCBI chr 6:104,937,026...105,083,332
Ensembl chr 6:104,936,616...105,083,332 		JBrowse link
negative regulation of primary miRNA processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G IL6 interleukin 6 acts_upstream_of IGI (PMID:31507089) ARUK-UCL PMID:31507089 NCBI chr 7:22,727,200...22,731,998
Ensembl chr 7:22,725,884...22,732,002 		JBrowse link
G LIN28B lin-28 homolog B involved_in IDA (PMID:18951094) CACAO PMID:18951094 NCBI chr 6:104,937,026...105,083,332
Ensembl chr 6:104,936,616...105,083,332 		JBrowse link
G MECP2 methyl-CpG binding protein 2 involved_in ISO
IEA		 RGD
Ensembl		 PMID:24636259 GO_REF:0000107 RGD:12789709 NCBI chr  X:154,021,573...154,097,717
Ensembl chr  X:154,021,573...154,137,103 		JBrowse link
G STAT3 signal transducer and activator of transcription 3 involved_in IMP (PMID:31507089) ARUK-UCL PMID:31507089 NCBI chr17:42,313,324...42,388,442
Ensembl chr17:42,313,324...42,388,568 		JBrowse link
piRNA processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ASZ1 ankyrin repeat, SAM and basic leucine zipper domain containing 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 7:117,363,222...117,427,493
Ensembl chr 7:117,363,222...117,428,123 		JBrowse link
G DDX4 DEAD-box helicase 4 involved_in ISS UniProt GO_REF:0000024 NCBI chr 5:55,738,061...55,817,157
Ensembl chr 5:55,738,017...55,817,157 		JBrowse link
G EXD1 exonuclease 3'-5' domain containing 1 involved_in ISS
IBA
IEA		 UniProt
GO_Central
TreeGrafter
Ensembl		 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 NCBI chr15:41,182,728...41,230,757
Ensembl chr15:41,182,725...41,230,757 		JBrowse link
G FKBP6 FKBP prolyl isomerase family member 6 (inactive) involved_in ISS
IBA
IEA		 UniProt
GO_Central
TreeGrafter
Ensembl		 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 NCBI chr 7:73,328,161...73,358,625
Ensembl chr 7:73,328,161...73,358,637 		JBrowse link
G GPAT2 glycerol-3-phosphate acyltransferase 2, mitochondrial involved_in ISS
IEA		 UniProt
Ensembl		 GO_REF:0000024 GO_REF:0000107 NCBI chr 2:96,021,946...96,036,265
Ensembl chr 2:96,021,946...96,039,451 		JBrowse link
G HENMT1 HEN methyltransferase 1 involved_in ISS
IEA
IBA		 UniProt
TreeGrafter
GO_Central
Ensembl		 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 NCBI chr 1:108,648,295...108,661,474
Ensembl chr 1:108,648,290...108,661,526 		JBrowse link
G LOC128966744 glycerol-3-phosphate acyltransferase 2, mitochondrial involved_in IEA
ISS		 Ensembl
UniProt		 GO_REF:0000024 GO_REF:0000107 NCBI chr 2:95,789,665...95,800,191 JBrowse link
G MAEL maelstrom spermatogenic transposon silencer involved_in ISS
IEA
IBA		 UniProt
TreeGrafter
GO_Central
Ensembl		 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 NCBI chr 1:166,975,582...167,022,214
Ensembl chr 1:166,975,582...167,022,214 		JBrowse link
G MOV10L1 Mov10 like RNA helicase 1 involved_in ISS UniProt GO_REF:0000024 NCBI chr22:50,090,006...50,161,687
Ensembl chr22:50,090,006...50,161,690 		JBrowse link
G PIWIL1 piwi like RNA-mediated gene silencing 1 involved_in IBA GO_Central GO_REF:0000033 NCBI chr12:130,337,887...130,426,260
Ensembl chr12:130,337,887...130,372,637 		JBrowse link
G PIWIL2 piwi like RNA-mediated gene silencing 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:22,275,316...22,357,568
Ensembl chr 8:22,275,316...22,357,568 		JBrowse link
G PIWIL3 piwi like RNA-mediated gene silencing 3 involved_in IBA GO_Central GO_REF:0000033 NCBI chr22:24,719,034...24,774,720
Ensembl chr22:24,719,034...24,774,720 		JBrowse link
G PIWIL4 piwi like RNA-mediated gene silencing 4 involved_in IBA GO_Central GO_REF:0000033 NCBI chr11:94,567,368...94,621,421
Ensembl chr11:94,543,840...94,621,421 		JBrowse link
G PLD6 phospholipase D family member 6 involved_in IEA
IBA		 Ensembl
GO_Central
TreeGrafter		 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 NCBI chr17:17,200,995...17,206,333
Ensembl chr17:17,200,995...17,206,333 		JBrowse link
G PNLDC1 PARN like ribonuclease domain containing exonuclease 1 involved_in IMP (PMID:34347949) UniProt PMID:34347949 NCBI chr 6:159,799,455...159,820,704
Ensembl chr 6:159,800,249...159,820,704 		JBrowse link
G TDRD1 tudor domain containing 1 involved_in ISS
IBA
IEA		 UniProt
GO_Central
Ensembl		 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr10:114,174,874...114,232,666
Ensembl chr10:114,179,270...114,232,666 		JBrowse link
G TDRD12 tudor domain containing 12 involved_in ISS UniProt GO_REF:0000024 NCBI chr19:32,719,767...32,829,580
Ensembl chr19:32,719,753...32,829,580 		JBrowse link
G TDRD5 tudor domain containing 5 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 1:179,591,613...179,691,272
Ensembl chr 1:179,591,613...179,691,272 		JBrowse link
G TDRD6 tudor domain containing 6 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 6:46,680,268...46,704,319
Ensembl chr 6:46,687,875...46,704,319 		JBrowse link
G TDRD7 tudor domain containing 7 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 9:97,412,096...97,496,125
Ensembl chr 9:97,412,096...97,496,125 		JBrowse link
G TDRD9 tudor domain containing 9 involved_in IEA
ISS		 Ensembl
UniProt		 GO_REF:0000024 GO_REF:0000107 NCBI chr14:103,928,456...104,052,667
Ensembl chr14:103,928,456...104,052,667 		JBrowse link
G TDRKH tudor and KH domain containing involved_in ISS
IEA
IBA		 UniProt
TreeGrafter
GO_Central
Ensembl		 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 NCBI chr 1:151,766,486...151,790,534
Ensembl chr 1:151,770,107...151,791,416 		JBrowse link
G TEX15 testis expressed 15, meiosis and synapsis associated NOT|involved_in ISS UniProt GO_REF:0000024 NCBI chr 8:30,831,544...30,913,008
Ensembl chr 8:30,831,544...30,913,008 		JBrowse link
positive regulation of miRNA processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G RIPK1 receptor interacting serine/threonine kinase 1 acts_upstream_of IDA (PMID:26020802) ARUK-UCL PMID:26020802 NCBI chr 6:3,063,967...3,115,187
Ensembl chr 6:3,063,824...3,115,187 		JBrowse link
positive regulation of pre-miRNA processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DGCR8 DGCR8 microprocessor complex subunit involved_in IDA (PMID:15574589), (PMID:32926445) UniProt PMID:15574589 PMID:32926445 NCBI chr22:20,080,241...20,111,872
Ensembl chr22:20,080,221...20,111,877 		JBrowse link
G TRUB1 TruB pseudouridine synthase family member 1 involved_in IDA (PMID:32926445) UniProt PMID:32926445 NCBI chr10:114,938,195...114,977,676
Ensembl chr10:114,938,195...114,977,676 		JBrowse link
positive regulation of primary miRNA processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BMP4 bone morphogenetic protein 4 involved_in IDA (PMID:18548003) BHF-UCL PMID:18548003 NCBI chr14:53,949,736...53,956,891
Ensembl chr14:53,949,736...53,958,761 		JBrowse link
G PRPF6 pre-mRNA processing factor 6 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr20:63,981,132...64,033,100
Ensembl chr20:63,981,132...64,033,100 		JBrowse link
G TGFB1 transforming growth factor beta 1 involved_in IDA (PMID:18548003) BHF-UCL PMID:18548003 NCBI chr19:41,330,323...41,353,922
Ensembl chr19:41,301,587...41,353,922 		JBrowse link
pre-miRNA processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ADAR adenosine deaminase RNA specific acts_upstream_of_or_within IDA (PMID:23622242) MGI PMID:23622242 NCBI chr 1:154,582,057...154,627,997
Ensembl chr 1:154,581,695...154,628,013 		JBrowse link
G AGO1 argonaute RISC component 1 involved_in IDA (PMID:19966796) BHF-UCL PMID:19966796 NCBI chr 1:35,869,761...35,930,532
Ensembl chr 1:35,869,808...35,930,532 		JBrowse link
G AGO2 argonaute RISC catalytic component 2 involved_in IEA
IDA		 (PMID:16424907), (PMID:17671087), (PMID:18178619), (PMID:19966796), (PMID:23661684) UniProt
Ensembl
BHF-UCL		 PMID:16424907 PMID:17671087 PMID:18178619 PMID:19966796 PMID:23661684 GO_REF:0000104 GO_REF:0000107 NCBI chr 8:140,520,156...140,642,313
Ensembl chr 8:140,520,156...140,635,633 		JBrowse link
G AGO3 argonaute RISC catalytic component 3 involved_in IDA (PMID:19966796) BHF-UCL PMID:19966796 NCBI chr 1:35,930,718...36,072,500
Ensembl chr 1:35,930,718...36,072,500 		JBrowse link
G AGO4 argonaute RISC component 4 involved_in IDA (PMID:19966796) BHF-UCL PMID:19966796 NCBI chr 1:35,807,636...35,857,890
Ensembl chr 1:35,808,016...35,857,890 		JBrowse link
G BCDIN3D BCDIN3 domain containing RNA methyltransferase involved_in IDA (PMID:33664453) ARUK-UCL PMID:33664453 NCBI chr12:49,836,043...49,843,106
Ensembl chr12:49,836,043...49,843,106 		JBrowse link
G DICER1 dicer 1, ribonuclease III involved_in
acts_upstream_of_or_within		 IEA
ISO
IBA
IDA		 (PMID:18604195)
(PMID:15973356), (PMID:16357216), (PMID:18178619), (PMID:23661684), (PMID:25549615)		 InterPro
MGI
GO_Central
TreeGrafter
UniProt
BHF-UCL		 PMID:15973356 PMID:16357216 PMID:18178619 PMID:18604195 PMID:23661684 More... GO_REF:0000002 GO_REF:0000033 GO_REF:0000117 GO_REF:0000118 NCBI chr14:95,086,228...95,158,010
Ensembl chr14:95,086,228...95,158,010 		JBrowse link
G DROSHA drosha ribonuclease III involved_in
acts_upstream_of_or_within		 IEA
ISO
IBA		 (PMID:18604195) InterPro
MGI
GO_Central
TreeGrafter
Ensembl		 PMID:18604195 GO_REF:0000002 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 NCBI chr 5:31,400,494...31,532,093
Ensembl chr 5:31,400,494...31,532,196 		JBrowse link
G LIN28A lin-28 homolog A involved_in
acts_upstream_of_or_within		 IEA
ISO
IBA
IMP		 (PMID:18604195)
(PMID:19703396)		 Ensembl
MGI
TreeGrafter
GO_Central
UniProt		 PMID:18604195 PMID:19703396 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 NCBI chr 1:26,410,817...26,429,728
Ensembl chr 1:26,410,817...26,429,728 		JBrowse link
G LIN28B lin-28 homolog B involved_in IMP
IEA
IBA		 (PMID:19703396) UniProt
TreeGrafter
GO_Central		 PMID:19703396 GO_REF:0000033 GO_REF:0000118 NCBI chr 6:104,937,026...105,083,332
Ensembl chr 6:104,936,616...105,083,332 		JBrowse link
G PRKRA protein activator of interferon induced protein kinase EIF2AK2 involved_in IDA (PMID:16424907), (PMID:23661684) BHF-UCL PMID:16424907 PMID:23661684 NCBI chr 2:178,431,414...178,451,175
Ensembl chr 2:178,431,292...178,451,512 		JBrowse link
G TARBP2 TARBP2 subunit of RISC loading complex involved_in IDA
IEA		 (PMID:15973356), (PMID:16357216), (PMID:16424907), (PMID:18178619), (PMID:23661684) ComplexPortal
UniProt		 PMID:15973356 PMID:16357216 PMID:16424907 PMID:18178619 PMID:23661684 GO_REF:0000104 NCBI chr12:53,500,923...53,506,431
Ensembl chr12:53,500,921...53,506,431 		JBrowse link
G TUT4 terminal uridylyl transferase 4 involved_in IMP
IDA		 (PMID:19703396)
(PMID:25979828)		 UniProt PMID:19703396 PMID:25979828 NCBI chr 1:52,423,275...52,553,463
Ensembl chr 1:52,408,282...52,553,487 		JBrowse link
G TUT7 terminal uridylyl transferase 7 involved_in IDA (PMID:25979828) UniProt PMID:25979828 NCBI chr 9:86,287,733...86,354,410
Ensembl chr 9:86,287,733...86,354,454 		JBrowse link
primary miRNA processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DDX3X DEAD-box helicase 3 X-linked acts_upstream_of_or_within_negative_effect ISO (PMID:28819115) MGI PMID:28819115 NCBI chr  X:41,333,308...41,364,472
Ensembl chr  X:41,333,348...41,364,472 		JBrowse link
G DDX5 DEAD-box helicase 5 involved_in IMP (PMID:18548003) BHF-UCL PMID:18548003 NCBI chr17:64,498,254...64,506,866
Ensembl chr17:64,498,254...64,508,199 		JBrowse link
G DGCR8 DGCR8 microprocessor complex subunit involved_in
acts_upstream_of_or_within		 IEA
IBA
IDA		 (PMID:15574589), (PMID:24449907), (PMID:24910438)
(PMID:15531877), (PMID:15574589)		 InterPro
TreeGrafter
GO_Central
BHF-UCL
MGI		 PMID:15531877 PMID:15574589 PMID:24449907 PMID:24910438 GO_REF:0000002 GO_REF:0000033 GO_REF:0000118 NCBI chr22:20,080,241...20,111,872
Ensembl chr22:20,080,221...20,111,877 		JBrowse link
G DROSHA drosha ribonuclease III involved_in IMP
IEA
IBA
IDA		 (PMID:14508493)
(PMID:14508493), (PMID:15574589)		 WB
TreeGrafter
GO_Central
BHF-UCL		 PMID:14508493 PMID:15574589 GO_REF:0000033 GO_REF:0000118 NCBI chr 5:31,400,494...31,532,093
Ensembl chr 5:31,400,494...31,532,196 		JBrowse link
G HNRNPA2B1 heterogeneous nuclear ribonucleoprotein A2/B1 involved_in IDA (PMID:26321680) UniProt PMID:26321680 NCBI chr 7:26,189,927...26,200,746
Ensembl chr 7:26,171,151...26,201,529 		JBrowse link
G METTL3 methyltransferase 3, N6-adenosine-methyltransferase complex catalytic subunit involved_in IDA (PMID:25799998) UniProt PMID:25799998 NCBI chr14:21,498,138...21,511,340
Ensembl chr14:21,498,133...21,511,342 		JBrowse link
G NCBP1 nuclear cap binding protein subunit 1 involved_in NAS (PMID:19632182) ComplexPortal PMID:19632182 NCBI chr 9:97,633,821...97,673,748
Ensembl chr 9:97,633,668...97,673,748 		JBrowse link
G NCBP2 nuclear cap binding protein subunit 2 involved_in NAS (PMID:19632182) ComplexPortal PMID:19632182 NCBI chr 3:196,935,406...196,942,528
Ensembl chr 3:196,935,402...196,942,594 		JBrowse link
G PUS10 pseudouridine synthase 10 involved_in IDA (PMID:31819270) UniProt PMID:31819270 NCBI chr 2:60,940,223...61,018,259
Ensembl chr 2:60,940,222...61,018,259 		JBrowse link
G SMAD1 SMAD family member 1 involved_in TAS (PMID:19018011) BHF-UCL PMID:19018011 NCBI chr 4:145,480,770...145,559,176
Ensembl chr 4:145,481,194...145,559,176 		JBrowse link
G SMAD2 SMAD family member 2 involved_in TAS (PMID:19018011) BHF-UCL PMID:19018011 NCBI chr18:47,808,957...47,930,872
Ensembl chr18:47,808,957...47,931,146 		JBrowse link
G SMAD3 SMAD family member 3 involved_in TAS (PMID:19018011) BHF-UCL PMID:19018011 NCBI chr15:67,065,602...67,195,169
Ensembl chr15:67,063,763...67,195,173 		JBrowse link
G SRRT serrate, RNA effector molecule involved_in IMP
IBA
IEA		 (PMID:19632182) UniProt
GO_Central
TreeGrafter
Ensembl		 PMID:19632182 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 NCBI chr 7:100,875,103...100,888,664
Ensembl chr 7:100,875,103...100,888,664 		JBrowse link
G SRSF3 serine and arginine rich splicing factor 3 involved_in IMP (PMID:33664453) ARUK-UCL PMID:33664453 NCBI chr 6:36,594,362...36,605,600
Ensembl chr 6:36,594,353...36,605,600 		JBrowse link
primary piRNA processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PIWIL1 piwi like RNA-mediated gene silencing 1 involved_in ISS
IEA		 UniProt
Ensembl		 GO_REF:0000024 GO_REF:0000107 NCBI chr12:130,337,887...130,426,260
Ensembl chr12:130,337,887...130,372,637 		JBrowse link
regulation of miRNA processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G TARBP2 TARBP2 subunit of RISC loading complex involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:27159388) InterPro
MGI		 PMID:27159388 GO_REF:0000002 NCBI chr12:53,500,923...53,506,431
Ensembl chr12:53,500,921...53,506,431 		JBrowse link
regulation of regulatory ncRNA processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ADAR adenosine deaminase RNA specific involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 1:154,582,057...154,627,997
Ensembl chr 1:154,581,695...154,628,013 		JBrowse link
G ADARB1 adenosine deaminase RNA specific B1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr21:45,074,578...45,226,563
Ensembl chr21:45,073,853...45,226,560 		JBrowse link
G PRKRA protein activator of interferon induced protein kinase EIF2AK2 involved_in IEA
IBA		 TreeGrafter
GO_Central		 GO_REF:0000033 GO_REF:0000118 NCBI chr 2:178,431,414...178,451,175
Ensembl chr 2:178,431,292...178,451,512 		JBrowse link
G TARBP2 TARBP2 subunit of RISC loading complex involved_in IEA
IBA		 TreeGrafter
GO_Central		 GO_REF:0000033 GO_REF:0000118 NCBI chr12:53,500,923...53,506,431
Ensembl chr12:53,500,921...53,506,431 		JBrowse link
regulation of siRNA processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G TARBP2 TARBP2 subunit of RISC loading complex involved_in IEA InterPro GO_REF:0000002 NCBI chr12:53,500,923...53,506,431
Ensembl chr12:53,500,921...53,506,431 		JBrowse link
secondary piRNA processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DDX4 DEAD-box helicase 4 involved_in ISO (MGI:5908740|PMID:28633017) UniProt PMID:28633017 MGI:5908740 NCBI chr 5:55,738,061...55,817,157
Ensembl chr 5:55,738,017...55,817,157 		JBrowse link
G PIWIL2 piwi like RNA-mediated gene silencing 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:22,275,316...22,357,568
Ensembl chr 8:22,275,316...22,357,568 		JBrowse link
G PIWIL4 piwi like RNA-mediated gene silencing 4 involved_in ISS UniProt GO_REF:0000024 NCBI chr11:94,567,368...94,621,421
Ensembl chr11:94,543,840...94,621,421 		JBrowse link
siRNA processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ADAR adenosine deaminase RNA specific involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 1:154,582,057...154,627,997
Ensembl chr 1:154,581,695...154,628,013 		JBrowse link
G ADARB1 adenosine deaminase RNA specific B1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr21:45,074,578...45,226,563
Ensembl chr21:45,073,853...45,226,560 		JBrowse link
G AGO2 argonaute RISC catalytic component 2 involved_in IDA (PMID:23661684) ComplexPortal PMID:23661684 NCBI chr 8:140,520,156...140,642,313
Ensembl chr 8:140,520,156...140,635,633 		JBrowse link
G DICER1 dicer 1, ribonuclease III involved_in
acts_upstream_of_or_within		 TAS
ISO
IBA
IEA
IMP
IDA		 (PMID:14528307)
(PMID:19701182)
(PMID:15973356), (PMID:17452327), (PMID:23661684)		 Reactome
MGI
GO_Central
TreeGrafter
BHF-UCL
InterPro
UniProt		 PMID:14528307 PMID:15973356 PMID:17452327 PMID:19701182 PMID:23661684 GO_REF:0000002 GO_REF:0000033 GO_REF:0000118 Reactome:R-HSA-426486 NCBI chr14:95,086,228...95,158,010
Ensembl chr14:95,086,228...95,158,010 		JBrowse link
G HENMT1 HEN methyltransferase 1 involved_in IEA
IBA		 TreeGrafter
GO_Central		 GO_REF:0000033 GO_REF:0000118 NCBI chr 1:108,648,295...108,661,474
Ensembl chr 1:108,648,290...108,661,526 		JBrowse link
G PRKRA protein activator of interferon induced protein kinase EIF2AK2 involved_in IDA
IEA
IBA		 (PMID:17452327) UniProt
TreeGrafter
GO_Central		 PMID:17452327 GO_REF:0000033 GO_REF:0000118 NCBI chr 2:178,431,414...178,451,175
Ensembl chr 2:178,431,292...178,451,512 		JBrowse link
G TARBP2 TARBP2 subunit of RISC loading complex involved_in IEA
IBA
IDA		 (PMID:15973356), (PMID:17452327), (PMID:23661684) UniProt
TreeGrafter
GO_Central		 PMID:15973356 PMID:17452327 PMID:23661684 GO_REF:0000033 GO_REF:0000104 GO_REF:0000118 NCBI chr12:53,500,923...53,506,431
Ensembl chr12:53,500,921...53,506,431 		JBrowse link
G TERT telomerase reverse transcriptase involved_in IDA (PMID:19701182) BHF-UCL PMID:19701182 NCBI chr 5:1,253,167...1,295,068
Ensembl chr 5:1,253,147...1,295,068 		JBrowse link
G TSN translin involved_in IDA (PMID:21552258) ComplexPortal PMID:21552258 NCBI chr 2:121,755,651...121,767,853
Ensembl chr 2:121,737,103...121,767,853 		JBrowse link
G TSNAX translin associated factor X involved_in IDA (PMID:21552258) ComplexPortal PMID:21552258 NCBI chr 1:231,528,669...231,566,524
Ensembl chr 1:231,528,541...231,566,524 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19770
    metabolic process 12509
      organic substance metabolic process 12005
        macromolecule metabolic process 10270
          macromolecule biosynthetic process 8233
            gene expression 7781
              RNA processing 1564
                regulatory ncRNA processing 78
                  miRNA processing + 51
                  piRNA processing + 23
                  regulation of regulatory ncRNA processing + 21
                  regulatory ncRNA 3'-end processing + 0
                  siRNA processing + 10
                  tRNA-derived regulatory ncRNA processing 0
Path 2
Term Annotations click to browse term
  biological_process 19770
    biological regulation 13405
      regulation of biological process 13030
        regulation of metabolic process 7344
          regulation of biosynthetic process 6134
            regulation of cellular biosynthetic process 6085
              regulation of macromolecule biosynthetic process 5939
                regulation of gene expression 5819
                  negative regulation of gene expression 1802
                    regulatory ncRNA-mediated gene silencing 733
                      regulatory ncRNA processing 78
                        miRNA processing + 51
                        piRNA processing + 23
                        regulation of regulatory ncRNA processing + 21
                        regulatory ncRNA 3'-end processing + 0
                        siRNA processing + 10
                        tRNA-derived regulatory ncRNA processing 0
paths to the root