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ONTOLOGY REPORT - ANNOTATIONS

Term:UV-damage excision repair
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Accession:GO:0070914 term browser browse the term
Definition:A DNA repair process that is initiated by an endonuclease that introduces a single-strand incision immediately 5' of a UV-induced damage site. UV-damage excision repair acts on both cyclobutane pyrimidine dimers (CPDs) and pyrimidine-pyrimidone 6-4 photoproducts (6-4PPs).
Synonyms:exact_synonym: UV-damaged DNA endonuclease-dependent excision repair;   UVDE-dependent excision repair;   UVER
 related_synonym: AER;   alternative excision repair

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UV-damage excision repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Actr5 actin related protein 5 involved_in ISO (PMID:20855601) UniProt PMID:20855601 NCBI chrNW_004955445:17,991,969...18,024,525
Ensembl chrNW_004955445:17,991,969...18,024,818 		JBrowse link
G Cul4b cullin 4B involved_in ISO (PMID:22334663) UniProt PMID:22334663 NCBI chrNW_004955572:1,308,491...1,365,147 JBrowse link
G Ddb1 damage specific DNA binding protein 1 involved_in ISO (PMID:14751237), (PMID:22334663) UniProt PMID:14751237 PMID:22334663 NCBI chrNW_004955511:6,209,777...6,233,594
Ensembl chrNW_004955511:6,209,777...6,233,594 		JBrowse link
G Ddb2 damage specific DNA binding protein 2 involved_in ISO (PMID:14751237), (PMID:22334663) UniProt PMID:14751237 PMID:22334663 NCBI chrNW_004955422:961,602...977,066
Ensembl chrNW_004955422:961,893...974,338 		JBrowse link
G Ino80 INO80 complex ATPase subunit involved_in ISO (PMID:20855601) UniProt PMID:20855601 NCBI chrNW_004955416:7,870,521...8,020,862
Ensembl chrNW_004955416:7,870,258...7,961,812 		JBrowse link
G LOC102022141 histone H2A type 1-D involved_in ISO (PMID:22334663) UniProt PMID:22334663 NCBI chrNW_004955581:93,494...100,249 JBrowse link
G Sirt1 sirtuin 1 involved_in ISO (PMID:20670893) CACAO PMID:20670893 NCBI chrNW_004955425:20,280,725...20,307,663
Ensembl chrNW_004955425:20,279,963...20,307,663 		JBrowse link
G Xpc XPC complex subunit, DNA damage recognition and repair factor involved_in ISO (PMID:8077226)
(PMID:22431748)		 CACAO
MGI		 PMID:8077226 PMID:22431748 NCBI chrNW_004955429:16,935,901...16,968,285
Ensembl chrNW_004955429:16,935,901...16,955,845 		JBrowse link
DNA synthesis involved in UV-damage excision repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pola1 DNA polymerase alpha 1, catalytic subunit NOT|involved_in ISO (PMID:1730053) UniProt PMID:1730053 NCBI chrNW_004955509:5,007,385...5,319,683
Ensembl chrNW_004955509:5,007,182...5,319,894 		JBrowse link
G Trex1 three prime repair exonuclease 1 acts_upstream_of_or_within ISO (PMID:23993650) MGI PMID:23993650 NCBI chrNW_004955532:533,877...535,767
Ensembl chrNW_004955532:533,877...535,767 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 12321
    response to stimulus 6667
      response to stress 3274
        cellular response to stress 1676
          DNA damage response 701
            DNA repair 403
              UV-damage excision repair 10
                DNA synthesis involved in UV-damage excision repair 2
Path 2
Term Annotations click to browse term
  biological_process 12321
    metabolic process 7441
      cellular metabolic process 6650
        cellular aromatic compound metabolic process 3915
          nucleobase-containing compound metabolic process 3724
            nucleic acid metabolic process 3358
              DNA metabolic process 759
                DNA repair 403
                  UV-damage excision repair 10
                    DNA synthesis involved in UV-damage excision repair 2
paths to the root