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ONTOLOGY REPORT - ANNOTATIONS


Term:heterochromatin organization
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Accession:GO:0070828 term browser browse the term
Definition:Any process that results in the specification, formation or maintenance of the physical structure of eukaryotic heterochromatin, a compact and highly condensed form of chromatin.
Synonyms:exact_synonym: heterochromatin organisation



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heterochromatin organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HDAC2 histone deacetylase 2 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 1:79,867,713...79,901,597
Ensembl chr 1:79,863,094...79,901,585
JBrowse link
G HP1BP3 heterochromatin protein 1 binding protein 3 involved_in IEA
IBA
(PMID:21873635) InterPro
GO_Central
InterPro
Ensembl
GO_Central
PMID:21873635 GO_REF:0000002 GO_REF:0000107 NCBI chr 6:78,975,551...79,007,921
Ensembl chr 6:78,975,550...79,007,214
JBrowse link
G LOXL2 lysyl oxidase like 2 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr14:7,435,861...7,540,699
Ensembl chr14:7,435,863...7,540,704
JBrowse link
G MECOM MDS1 and EVI1 complex locus involved_in ISO (MGI:6274969|PMID:22939622) UniProt PMID:22939622 MGI:6274969 NCBI chr13:107,753,207...108,336,136
Ensembl chr13:107,754,480...108,335,503
JBrowse link
G MTHFR methylenetetrahydrofolate reductase involved_in
acts_upstream_of
IEA
ISO
(PMID:24769206) Ensembl
Ensembl
BHF-UCL
PMID:24769206 GO_REF:0000107 NCBI chr 6:71,863,637...71,882,118
Ensembl chr 6:71,863,636...71,881,820
JBrowse link
G PRDM16 PR/SET domain 16 involved_in ISO (MGI:6274969|PMID:22939622) UniProt PMID:22939622 MGI:6274969 NCBI chr 6:64,704,181...65,012,580
Ensembl chr 6:64,704,468...65,012,575
JBrowse link
G SETD7 SET domain containing 7, histone lysine methyltransferase involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:23509280)
(MGI:5471848|PMID:23509280)
Ensembl
Ensembl
MGI
PMID:23509280 GO_REF:0000107 MGI:5471848 NCBI chr 8:87,478,266...87,527,190
Ensembl chr 8:87,477,808...87,527,190
JBrowse link
G SETDB1 SET domain bifurcated histone lysine methyltransferase 1 involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr 4:98,259,801...98,293,238
Ensembl chr 4:98,260,373...98,293,096
JBrowse link
G SNAI1 snail family transcriptional repressor 1 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr17:51,546,446...51,552,498
Ensembl chr17:51,546,393...51,552,504
JBrowse link
DNA methylation-dependent heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DNMT1 DNA methyltransferase 1 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 2:68,981,564...69,040,364
Ensembl chr 2:68,981,564...69,029,919
JBrowse link
G DNMT3A DNA methyltransferase 3 alpha involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3768461|PMID:17938196)
(MGI:3611125|PMID:16322236)
Ensembl
Ensembl
MGI
PMID:16322236 PMID:17938196 GO_REF:0000107 MGI:3611125 MGI:3768461 NCBI chr 3:113,501,972...113,609,148
Ensembl chr 3:113,528,926...113,609,139
JBrowse link
G DNMT3B DNA methyltransferase 3 beta acts_upstream_of_or_within ISO (MGI:3768461|PMID:17938196) MGI PMID:17938196 MGI:3768461 NCBI chr17:36,345,715...36,386,076
Ensembl chr17:36,332,801...36,386,074
JBrowse link
G HDAC1 histone deacetylase 1 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 6:88,749,611...88,785,220
Ensembl chr 6:88,749,634...88,785,412
JBrowse link
G HELLS helicase, lymphoid specific involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr14:105,923,727...105,967,003
Ensembl chr14:105,923,552...105,966,998
JBrowse link
G KMT2B lysine methyltransferase 2B acts_upstream_of_or_within ISO (MGI:4849597|PMID:20808952) MGI PMID:20808952 MGI:4849597 NCBI chr 6:45,146,863...45,166,854
Ensembl chr 6:45,146,846...45,166,852
JBrowse link
G MBD2 methyl-CpG binding domain protein 2 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 1:103,683,077...103,768,372
Ensembl chr 1:103,683,065...103,752,427
JBrowse link
G MBD3 methyl-CpG binding domain protein 3 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3611125|PMID:16322236) Ensembl
Ensembl
MGI
PMID:16322236 GO_REF:0000107 MGI:3611125 NCBI chr 2:76,913,880...76,923,435
Ensembl chr 2:76,906,644...76,923,435
JBrowse link
G SMARCA4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 acts_upstream_of_or_within ISO (MGI:3611125|PMID:16322236) MGI PMID:16322236 MGI:3611125 NCBI chr 2:69,717,175...69,810,301
Ensembl chr 2:69,662,238...69,810,298
JBrowse link
genomic imprinting term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ASIP agouti signaling protein acts_upstream_of_or_within ISO (MGI:2652932|PMID:12601169) MGI PMID:12601169 MGI:2652932 NCBI chr17:37,542,615...37,718,787 JBrowse link
G AXIN1 axin 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:2652932|PMID:12601169) MGI
Ensembl
Ensembl
PMID:12601169 GO_REF:0000107 MGI:2652932 NCBI chr 3:41,344,908...41,393,999
Ensembl chr 3:41,337,071...41,393,997
JBrowse link
G CDKN1C cyclin dependent kinase inhibitor 1C acts_upstream_of_or_within ISO (MGI:3839493|PMID:19276117) MGI PMID:19276117 MGI:3839493 NCBI chr 2:2,019,391...2,022,092
Ensembl chr 2:2,019,490...2,021,853
JBrowse link
G CTCF CCCTC-binding factor involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:28,188,002...28,261,009
Ensembl chr 6:28,195,668...28,261,009
JBrowse link
G DNMT3L DNA methyltransferase 3 like involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3663953|PMID:16920095) Ensembl
Ensembl
MGI
PMID:16920095 GO_REF:0000107 MGI:3663953 NCBI chr13:207,119,025...207,141,990 JBrowse link
G GNAS GNAS complex locus involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:4454202|PMID:20427744) Ensembl
Ensembl
MGI
PMID:20427744 GO_REF:0000107 MGI:4454202 NCBI chr17:58,985,580...59,053,022
Ensembl chr17:58,998,981...59,053,021
JBrowse link
G NDN necdin, MAGE family member involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:1345919|PMID:10508517) Ensembl
Ensembl
MGI
PMID:10508517 GO_REF:0000107 MGI:1345919 NCBI chr 1:142,412,688...142,413,665
Ensembl chr 1:142,412,565...142,414,240
JBrowse link
G ZDBF2 zinc finger DBF-type containing 2 acts_upstream_of_or_within ISO (MGI:6151717|PMID:27841881) MGI PMID:27841881 MGI:6151717 NCBI chr15:109,563,445...109,593,858
Ensembl chr15:109,563,440...109,589,700
JBrowse link
G ZFP57 ZFP57 zinc finger protein acts_upstream_of_or_within ISO (MGI:6506156|PMID:33500348) MGI PMID:33500348 MGI:6506156 NCBI chr 7:22,607,420...22,612,064
Ensembl chr 7:22,605,125...22,612,064
JBrowse link
heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BAHD1 bromo adjacent homology domain containing 1 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 1:130,849,835...130,874,735
Ensembl chr 1:130,849,835...130,878,321
JBrowse link
G BAZ2A bromodomain adjacent to zinc finger domain 2A acts_upstream_of_or_within ISO (MGI:3653583|PMID:16678107)
(MGI:4462332|PMID:20168299)
MGI PMID:16678107 PMID:20168299 MGI:3653583 MGI:4462332 NCBI chr 5:21,932,527...21,983,033
Ensembl chr 5:21,933,894...21,983,021
JBrowse link
G BMI1 BMI1 proto-oncogene, polycomb ring finger involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr10:52,586,089...52,596,154
Ensembl chr10:52,586,280...52,596,376
JBrowse link
G CBX3 chromobox 3 involved_in ISO (PMID:17540172) ComplexPortal PMID:17540172 NCBI chr18:46,193,138...46,205,114
Ensembl chr18:46,193,138...46,204,714
JBrowse link
G CTBP1 C-terminal binding protein 1 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 8:475,164...496,510
Ensembl chr 8:475,082...495,984
JBrowse link
G EED embryonic ectoderm development involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr 9:20,123,077...20,158,747
Ensembl chr 9:20,123,857...20,158,816
JBrowse link
G EZH1 enhancer of zeste 1 polycomb repressive complex 2 subunit involved_in ISO (MGI:3820717|PMID:19026781) ARUK-UCL PMID:19026781 MGI:3820717 NCBI chr12:20,107,744...20,139,764
Ensembl chr12:20,115,297...20,141,749
JBrowse link
G H2AFY H2A histone family, member Y involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr 2:137,535,128...137,623,886
Ensembl chr 2:137,535,131...137,623,889
JBrowse link
G H2AFZ H2A histone family, member Z involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr 8:120,563,752...120,566,023
Ensembl chr 8:120,563,752...120,566,034
JBrowse link
G HELLS helicase, lymphoid specific acts_upstream_of_or_within ISO (MGI:3510059|PMID:15448183) MGI PMID:15448183 MGI:3510059 NCBI chr14:105,923,727...105,967,003
Ensembl chr14:105,923,552...105,966,998
JBrowse link
G HMGA2 high mobility group AT-hook 2 involved_in ISO (PMID:16901784) UniProt PMID:16901784 NCBI chr 5:30,188,521...30,329,635 JBrowse link
G KMT2D lysine methyltransferase 2D involved_in ISO (MGI:4849597|PMID:20808952) UniProt PMID:20808952 MGI:4849597 NCBI chr 5:15,049,827...15,091,622 JBrowse link
G LOC100154071 histone H2A type 1-like involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr 7:21,592,937...21,593,433 JBrowse link
G LOC100154181 histone H2A type 2-B involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr 4:99,168,195...99,168,679
Ensembl chr 4:99,168,255...99,168,647
JBrowse link
G LOC100155734 histone H2A type 1 involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr 7:20,863,594...20,864,115
Ensembl chr 7:20,789,769...20,867,386
JBrowse link
G LOC100157763 histone H2A type 1-H involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr 7:21,582,735...21,583,552
Ensembl chr 7:21,226,552...21,232,705
JBrowse link
G LOC100158121 histone H2A type 1 involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr 7:20,857,026...20,858,357
Ensembl chr 7:21,632,862...21,936,037
JBrowse link
G LOC100359361 high mobility group AT-hook 2-like involved_in ISS UniProt GO_REF:0000024 NCBI chr 1:191,094,785...191,105,394 JBrowse link
G LOC100510904 histone H1.0 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 5:10,038,944...10,041,242
Ensembl chr 5:10,038,951...10,041,080
JBrowse link
G LOC100512448 histone H2A.V involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr18:50,533,382...50,548,341
Ensembl chr18:50,533,429...50,556,439
JBrowse link
G LOC100520991 histone H2A-Bbd type 1-like involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr  X:32,692,523...32,693,072 JBrowse link
G LOC100620620 histone H2A-Bbd type 2/3 involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr  X:125,537,401...125,540,026 JBrowse link
G LOC100621538 histone H2A type 3 involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr 2:51,688,375...51,704,824
Ensembl chr 2:51,693,853...51,694,245
JBrowse link
G LOC100622387 histone H2A type 1 involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr 7:21,632,867...21,633,939
Ensembl chr 7:21,632,862...21,936,037
JBrowse link
G LOC100625850 histone H2A.J involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr 5:57,777,008...57,777,673
Ensembl chr 5:57,777,010...57,777,654
JBrowse link
G LOC102159655 histone H2A type 2-A-like involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr 4:99,197,499...99,198,164
Ensembl chr 4:99,197,661...99,198,053
JBrowse link
G LOC106510170 histone H2A type 2-C involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr 4:99,168,743...99,169,270
Ensembl chr 4:99,168,806...99,169,195
JBrowse link
G LOC110255320 lysine-specific demethylase 6A-like acts_upstream_of_or_within ISO (MGI:5305502|PMID:22192413) MGI PMID:22192413 MGI:5305502 NCBI chr  Y:8,937,949...9,087,971 JBrowse link
G MACROH2A2 macroH2A.2 histone involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr14:73,002,385...73,055,228
Ensembl chr14:73,003,117...73,055,226
JBrowse link
G MECP2 methyl-CpG binding protein 2 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3530434|PMID:15608638) MGI
Ensembl
Ensembl
PMID:15608638 GO_REF:0000107 MGI:3530434 NCBI chr  X:124,735,523...124,789,063
Ensembl chr  X:124,735,656...124,789,110
JBrowse link
G MORF4L1 mortality factor 4 like 1 involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr 7:48,050,050...48,075,799
Ensembl chr 7:48,050,045...48,075,796
JBrowse link
G MORF4L2 mortality factor 4 like 2 involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr  X:84,553,770...84,566,304
Ensembl chr  X:84,552,705...84,569,030
JBrowse link
G MSL3 MSL complex subunit 3 involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr  X:8,519,366...8,535,249
Ensembl chr  X:8,518,835...8,535,249
JBrowse link
G PCGF2 polycomb group ring finger 2 involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr12:23,362,631...23,375,779
Ensembl chr12:23,362,654...23,375,775
JBrowse link
G POLE3 DNA polymerase epsilon 3, accessory subunit involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr 1:254,033,378...254,036,224 JBrowse link
G PPM1D protein phosphatase, Mg2+/Mn2+ dependent 1D involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr12:37,485,601...37,536,159
Ensembl chr12:37,485,586...37,536,146
JBrowse link
G RB1 RB transcriptional corepressor 1 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr11:19,186,754...19,317,642
Ensembl chr11:19,186,759...19,317,690
JBrowse link
G RBBP4 RB binding protein 4, chromatin remodeling factor involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr 6:88,987,092...89,006,815 JBrowse link
G RBBP7 RB binding protein 7, chromatin remodeling factor involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr  X:13,293,278...13,317,074
Ensembl chr  X:13,280,977...13,317,079
JBrowse link
G SIRT1 sirtuin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:71,091,167...71,126,351
Ensembl chr14:71,091,157...71,123,299
JBrowse link
G SMARCA5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:84,184,572...84,224,943
Ensembl chr 8:84,184,575...84,224,871
JBrowse link
G TNP1 transition protein 1 involved_in ISS
IEA
UniProt
Ensembl
UniProt
GO_REF:0000024 GO_REF:0000107 NCBI chr15:119,037,492...119,038,099
Ensembl chr15:119,037,496...119,038,105
JBrowse link
G UBR2 ubiquitin protein ligase E3 component n-recognin 2 involved_in IBA
IEA
(PMID:21873635) GO_Central
Ensembl
GO_Central
PMID:21873635 GO_REF:0000107 NCBI chr 7:37,655,808...37,785,301
Ensembl chr 7:37,655,847...37,784,359
JBrowse link
heterochromatin assembly by small RNA term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FAM172A family with sequence similarity 172 member A involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr 2:100,477,770...100,893,594
Ensembl chr 2:100,477,775...100,893,580
JBrowse link
G NRDE2 NRDE-2, necessary for RNA interference, domain containing involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr 7:112,039,949...112,090,632
Ensembl chr 7:112,038,234...112,090,511
JBrowse link
G TRMT10C tRNA methyltransferase 10C, mitochondrial RNase P subunit involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr13:157,495,075...157,522,349
Ensembl chr13:157,497,562...157,504,418
JBrowse link
G ZNFX1 zinc finger NFX1-type containing 1 involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr17:50,925,789...50,958,722
Ensembl chr17:50,925,789...50,958,705
JBrowse link
inactivation of X chromosome by heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SMCHD1 structural maintenance of chromosomes flexible hinge domain containing 1 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 6:103,809,732...103,986,057
Ensembl chr 6:103,808,066...103,986,144
JBrowse link
negative regulation of DNA methylation-dependent heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AICDA activation induced cytidine deaminase involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 5:62,777,236...62,787,342
Ensembl chr 5:62,777,352...62,787,483
JBrowse link
G APOBEC1 apolipoprotein B mRNA editing enzyme catalytic subunit 1 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 5:62,811,819...62,820,532
Ensembl chr 5:62,810,879...62,820,173
JBrowse link
G TET1 tet methylcytosine dioxygenase 1 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr14:71,675,671...71,812,732
Ensembl chr14:71,675,671...71,815,621
JBrowse link
negative regulation of ribosomal DNA heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PHF2 PHD finger protein 2 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 3:42,988,607...43,078,811
Ensembl chr 3:42,988,634...43,078,813
JBrowse link
G PHF8 PHD finger protein 8 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr  X:46,648,164...46,761,192
Ensembl chr  X:46,648,165...46,759,248
JBrowse link
pericentric heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CENPV centromere protein V involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr12:59,200,041...59,215,941
Ensembl chr12:59,200,031...59,209,664
JBrowse link
G DICER1 dicer 1, ribonuclease III acts_upstream_of_or_within ISO (MGI:3528782|PMID:15713842) MGI PMID:15713842 MGI:3528782 NCBI chr 7:116,361,630...116,436,471
Ensembl chr 7:116,361,630...116,436,519
JBrowse link
G H3-3A H3 histone, family 3A acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5694896|PMID:26159997) MGI
Ensembl
Ensembl
PMID:26159997 GO_REF:0000107 MGI:5694896 NCBI chr10:13,939,938...13,947,976
Ensembl chr10:13,939,594...13,948,000
JBrowse link
G HELLS helicase, lymphoid specific involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr14:105,923,727...105,967,003
Ensembl chr14:105,923,552...105,966,998
JBrowse link
G LOC100521680 histone H3.3 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5694896|PMID:26159997) MGI
Ensembl
Ensembl
PMID:26159997 GO_REF:0000107 MGI:5694896 NCBI chr12:5,632,326...5,634,977
Ensembl chr12:5,632,365...5,634,726
JBrowse link
pericentric heterochromatin organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G WDHD1 WD repeat and HMG-box DNA binding protein 1 acts_upstream_of_or_within ISO (MGI:5317038|PMID:21266480) MGI PMID:21266480 MGI:5317038 NCBI chr 1:184,300,291...184,378,974
Ensembl chr 1:184,300,291...184,378,959
JBrowse link
positive regulation of DNA methylation-dependent heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATF7IP activating transcription factor 7 interacting protein involved_in IBA
IEA
(PMID:21873635) GO_Central
GO_Central
Ensembl
PMID:21873635 GO_REF:0000107 NCBI chr 5:58,022,734...58,149,980
Ensembl chr 5:58,022,740...58,150,185
JBrowse link
G ATF7IP2 activating transcription factor 7 interacting protein 2 involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr 3:32,523,462...32,598,946
Ensembl chr 3:32,523,461...32,598,855
JBrowse link
G DNMT1 DNA methyltransferase 1 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 2:68,981,564...69,040,364
Ensembl chr 2:68,981,564...69,029,919
JBrowse link
G MORC2 MORC family CW-type zinc finger 2 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr14:47,755,264...47,800,432
Ensembl chr14:47,754,282...47,799,643
JBrowse link
G MPHOSPH8 M-phase phosphoprotein 8 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr11:447,019...480,121
Ensembl chr11:447,052...480,121
JBrowse link
G PPHLN1 periphilin 1 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 5:73,556,205...73,696,403
Ensembl chr 5:73,496,820...73,709,342
JBrowse link
G RESF1 retroelement silencing factor 1 involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr 5:42,263,560...42,299,596
Ensembl chr 5:42,261,290...42,299,514
JBrowse link
G SETDB1 SET domain bifurcated histone lysine methyltransferase 1 involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr 4:98,259,801...98,293,238
Ensembl chr 4:98,260,373...98,293,096
JBrowse link
G TASOR transcription activation suppressor involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr13:38,491,048...38,557,256
Ensembl chr13:38,491,055...38,557,931
JBrowse link
G TRIM28 tripartite motif containing 28 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 6:63,094,382...63,101,532
Ensembl chr 6:63,094,648...63,101,532
JBrowse link
G ZNF304 zinc finger protein 304 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 6:61,740,677...61,790,290
Ensembl chr 6:61,695,111...61,784,106
JBrowse link
positive regulation of heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CDK2 cyclin dependent kinase 2 involved_in ISO (PMID:20935635) UniProt PMID:20935635 NCBI chr 5:21,365,723...21,372,170
Ensembl chr 5:21,365,763...21,392,726
JBrowse link
G SIN3A SIN3 transcription regulator family member A involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 7:58,171,821...58,246,126
Ensembl chr 7:58,176,166...58,245,762
JBrowse link
G TPR translocated promoter region, nuclear basket protein involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 9:127,481,678...127,540,393
Ensembl chr 9:127,481,684...127,540,790
JBrowse link
rDNA heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BAZ2A bromodomain adjacent to zinc finger domain 2A involved_in
acts_upstream_of_or_within
ISO (MGI:3587127|PMID:16085498), (MGI:3852313|PMID:12198165), (MGI:3852588|PMID:19578370)
(MGI:3653583|PMID:16678107)
(MGI:4462332|PMID:20168299)
UniProt
MGI
PMID:12198165 PMID:16085498 PMID:16678107 PMID:19578370 PMID:20168299 MGI:3587127 MGI:3653583 MGI:3852313 MGI:3852588 MGI:4462332 NCBI chr 5:21,932,527...21,983,033
Ensembl chr 5:21,933,894...21,983,021
JBrowse link
G BEND3 BEN domain containing 3 involved_in IBA
IEA
(PMID:21873635) GO_Central
InterPro
Ensembl
GO_Central
PMID:21873635 GO_REF:0000002 GO_REF:0000107 NCBI chr 1:73,184,745...73,224,663
Ensembl chr 1:73,184,753...73,360,113
JBrowse link
G RRP8 ribosomal RNA processing 8 involved_in IBA
IEA
(PMID:21873635) GO_Central
Ensembl
GO_Central
Ensembl
PMID:21873635 GO_REF:0000107 NCBI chr 9:3,152,162...3,169,380
Ensembl chr 9:3,150,877...3,162,562
JBrowse link
G SIRT1 sirtuin 1 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr14:71,091,167...71,126,351
Ensembl chr14:71,091,157...71,123,299
JBrowse link
G SMARCA5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 8:84,184,572...84,224,943
Ensembl chr 8:84,184,575...84,224,871
JBrowse link
G SUV39H1 SUV39H1 histone lysine methyltransferase involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr  X:42,797,309...42,811,457
Ensembl chr  X:42,797,828...42,814,003
JBrowse link
G UBTF upstream binding transcription factor acts_upstream_of_or_within ISO (MGI:3836497|PMID:19103806) MGI PMID:19103806 MGI:3836497 NCBI chr12:18,989,833...19,006,145
Ensembl chr12:18,989,836...19,006,141
JBrowse link
regulation of DNA methylation-dependent heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G KDM1A lysine demethylase 1A involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 6:80,903,407...80,971,875
Ensembl chr 6:80,903,496...80,971,595
JBrowse link
G L3MBTL3 L3MBTL histone methyl-lysine binding protein 3 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 1:33,198,295...33,319,477
Ensembl chr 1:33,198,301...33,319,367
JBrowse link
G POU5F1 POU class 5 homeobox 1 involved_in ISO (PMID:19736317) BHF-UCL PMID:19736317 NCBI chr 7:23,564,654...23,570,691 JBrowse link
G SAMD1 sterile alpha motif domain containing 1 involved_in ISO (PMID:33980486) UniProt PMID:33980486 NCBI chr 2:65,096,499...65,099,799
Ensembl chr 2:65,096,187...65,099,794
JBrowse link
regulation of genetic imprinting term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CTR9 CTR9 homolog, Paf1/RNA polymerase II complex component involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5528755|PMID:24036311) Ensembl
Ensembl
MGI
PMID:24036311 GO_REF:0000107 MGI:5528755 NCBI chr 2:48,700,629...48,729,480
Ensembl chr 2:48,697,972...48,729,307
JBrowse link
G DPPA3 developmental pluripotency associated 3 involved_in ISO (MGI:5432962|PMID:22722204), (MGI:5447615|PMID:17143267) UniProt PMID:17143267 PMID:22722204 MGI:5432962 MGI:5447615 NCBI chr 5:62,861,492...62,868,131 JBrowse link
G PIK3CA phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr13:117,193,935...117,282,151
Ensembl chr13:117,180,544...117,277,232
JBrowse link
G TET1 tet methylcytosine dioxygenase 1 acts_upstream_of_or_within ISO (MGI:5559953|PMID:24291790) MGI PMID:24291790 MGI:5559953 NCBI chr14:71,675,671...71,812,732
Ensembl chr14:71,675,671...71,815,621
JBrowse link
G TRIM28 tripartite motif containing 28 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5319411|PMID:22495301) Ensembl
Ensembl
MGI
PMID:22495301 GO_REF:0000107 MGI:5319411 NCBI chr 6:63,094,382...63,101,532
Ensembl chr 6:63,094,648...63,101,532
JBrowse link
G ZFP42 ZFP42 zinc finger protein acts_upstream_of_or_within ISO (MGI:4940138|PMID:21233130) MGI PMID:21233130 MGI:4940138 NCBI chr17:7,401,729...7,409,027
Ensembl chr17:7,402,071...7,403,247
JBrowse link
G ZFP57 ZFP57 zinc finger protein involved_in ISO (MGI:6284037|PMID:30602440) UniProt PMID:30602440 MGI:6284037 NCBI chr 7:22,607,420...22,612,064
Ensembl chr 7:22,605,125...22,612,064
JBrowse link
G ZNF445 zinc finger protein 445 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr13:27,748,437...27,783,348
Ensembl chr13:27,748,481...27,783,315
JBrowse link
regulation of ribosomal DNA heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G H2AFY H2A histone family, member Y NOT|involved_in ISO (PMID:24071584) UniProt PMID:24071584 NCBI chr 2:137,535,128...137,623,886
Ensembl chr 2:137,535,131...137,623,889
JBrowse link
subtelomeric heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DOT1L DOT1 like histone lysine methyltransferase involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr 2:76,339,452...76,401,974
Ensembl chr 2:76,339,470...76,401,966
JBrowse link
G DPY30 dpy-30 histone methyltransferase complex regulatory subunit involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr 3:107,520,641...107,533,504
Ensembl chr 3:107,520,642...107,533,496
JBrowse link
G DYDC2 DPY30 domain containing 2 involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr14:82,197,194...82,209,477
Ensembl chr14:82,197,189...82,209,280
JBrowse link
G EZH1 enhancer of zeste 1 polycomb repressive complex 2 subunit involved_in ISO (MGI:892875|PMID:9214638) ARUK-UCL PMID:9214638 MGI:892875 NCBI chr12:20,107,744...20,139,764
Ensembl chr12:20,115,297...20,141,749
JBrowse link
G EZH2 enhancer of zeste 2 polycomb repressive complex 2 subunit involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 9:109,384,976...109,450,943
Ensembl chr 9:109,384,995...109,450,941
JBrowse link
G H3-3A H3 histone, family 3A acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5694896|PMID:26159997) MGI
Ensembl
Ensembl
PMID:26159997 GO_REF:0000107 MGI:5694896 NCBI chr10:13,939,938...13,947,976
Ensembl chr10:13,939,594...13,948,000
JBrowse link
G LOC100521680 histone H3.3 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5694896|PMID:26159997) MGI
Ensembl
Ensembl
PMID:26159997 GO_REF:0000107 MGI:5694896 NCBI chr12:5,632,326...5,634,977
Ensembl chr12:5,632,365...5,634,726
JBrowse link
G RIF1 replication timing regulatory factor 1 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr15:769,518...832,036
Ensembl chr15:774,189...832,010
JBrowse link
G SIRT6 sirtuin 6 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 2:74,568,539...74,577,774
Ensembl chr 2:74,568,436...74,577,772
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 16975
    cellular process 16218
      cellular component organization or biogenesis 6076
        cellular component organization 5901
          chromatin organization 488
            heterochromatin organization 115
              heterochromatin assembly + 106
              heterochromatin boundary formation 0
              negative regulation of heterochromatin organization + 5
              pericentric heterochromatin organization + 6
              positive regulation of heterochromatin organization + 14
              regulation of heterochromatin organization + 30
              silent mating-type cassette heterochromatin organization 0
Path 2
Term Annotations click to browse term
  biological_process 16975
    cellular process 16218
      cellular component organization or biogenesis 6076
        cellular component organization 5901
          organelle organization 3657
            chromosome organization 907
              chromatin organization 488
                heterochromatin organization 115
                  heterochromatin assembly + 106
                  heterochromatin boundary formation 0
                  negative regulation of heterochromatin organization + 5
                  pericentric heterochromatin organization + 6
                  positive regulation of heterochromatin organization + 14
                  regulation of heterochromatin organization + 30
                  silent mating-type cassette heterochromatin organization 0
paths to the root