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ONTOLOGY REPORT - ANNOTATIONS


Term:heterochromatin organization
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Accession:GO:0070828 term browser browse the term
Definition:Any process that results in the specification, formation or maintenance of the physical structure of eukaryotic heterochromatin, a compact and highly condensed form of chromatin.
Synonyms:exact_synonym: heterochromatin organisation



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heterochromatin organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hdac2 histone deacetylase 2 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr10:36,974,297...37,001,889
Ensembl chr10:36,974,544...37,001,889
JBrowse link
G Hp1bp3 heterochromatin protein 1, binding protein 3 involved_in ISO
IBA
(MGI:6201960|PMID:21873635) MGI
GO_Central
PMID:21873635 GO_REF:0000096 MGI:4834177 MGI:6201960 NCBI chr 4:138,216,470...138,244,683
Ensembl chr 4:138,216,296...138,244,683
JBrowse link
G Loxl2 lysyl oxidase-like 2 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr14:69,608,692...69,695,834
Ensembl chr14:69,609,068...69,695,834
JBrowse link
G Mecom MDS1 and EVI1 complex locus involved_in IMP (MGI:6274969|PMID:22939622) UniProt PMID:22939622 MGI:6274969 NCBI chr 3:29,951,296...30,509,759
Ensembl chr 3:29,951,296...30,548,008
JBrowse link
G Mthfr methylenetetrahydrofolate reductase acts_upstream_of ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 4:148,039,077...148,059,562
Ensembl chr 4:148,039,077...148,059,551
JBrowse link
G Prdm16 PR domain containing 16 involved_in IMP (MGI:6274969|PMID:22939622) UniProt PMID:22939622 MGI:6274969 NCBI chr 4:154,316,122...154,637,360
Ensembl chr 4:154,316,125...154,636,873
JBrowse link
G Setd7 SET domain containing (lysine methyltransferase) 7 acts_upstream_of_or_within ISO
IMP
(MGI:5471848|PMID:23509280) MGI PMID:23509280 MGI:5471848 NCBI chr 3:51,515,318...51,560,823
Ensembl chr 3:51,515,319...51,560,879
JBrowse link
G Setdb1 SET domain, bifurcated 1 involved_in IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr 3:95,323,525...95,357,202
Ensembl chr 3:95,323,525...95,357,202
JBrowse link
G Setdb2 SET domain, bifurcated 2 involved_in IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr14:59,402,009...59,440,880
Ensembl chr14:59,402,009...59,440,884
JBrowse link
G Snai1 snail family zinc finger 1 involved_in IMP (MGI:5548026|PMID:24239292) UniProt PMID:24239292 MGI:5548026 NCBI chr 2:167,538,195...167,542,814
Ensembl chr 2:167,538,195...167,542,814
JBrowse link
DNA methylation-dependent heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dnmt1 DNA methyltransferase (cytosine-5) 1 involved_in IDA (MGI:3687778|PMID:10615135) UniProt PMID:10615135 MGI:3687778 NCBI chr 9:20,907,206...20,959,888
Ensembl chr 9:20,907,209...20,959,888
JBrowse link
G Dnmt3a DNA methyltransferase 3A acts_upstream_of_or_within IDA
IGI
(MGI:3611125|PMID:16322236)
(MGI:3768461|PMID:17938196)
MGI PMID:16322236 PMID:17938196 MGI:3611125 MGI:3768461 NCBI chr12:3,801,559...3,914,443
Ensembl chr12:3,806,007...3,914,443
JBrowse link
G Dnmt3b DNA methyltransferase 3B acts_upstream_of_or_within IGI (MGI:3768461|PMID:17938196) MGI PMID:17938196 MGI:3768461 NCBI chr 2:153,649,411...153,687,730
Ensembl chr 2:153,649,450...153,687,730
JBrowse link
G Hdac1 histone deacetylase 1 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 4:129,516,104...129,542,646
Ensembl chr 4:129,516,104...129,542,713
JBrowse link
G Hells helicase, lymphoid specific involved_in IBA
IMP
(MGI:6201960|PMID:21873635)
(MGI:3573964|PMID:15647320)
GO_Central
UniProt
PMID:15647320 PMID:21873635 MGI:3573964 MGI:6201960 NCBI chr19:38,930,262...38,970,470
Ensembl chr19:38,930,915...38,971,051
JBrowse link
G Kmt2b lysine (K)-specific methyltransferase 2B acts_upstream_of_or_within IMP (MGI:4849597|PMID:20808952) MGI PMID:20808952 MGI:4849597 NCBI chr 7:30,568,855...30,589,056
Ensembl chr 7:30,568,858...30,588,726
JBrowse link
G Mbd2 methyl-CpG binding domain protein 2 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr18:70,568,225...70,629,134
Ensembl chr18:70,568,189...70,626,131
JBrowse link
G Mbd3 methyl-CpG binding domain protein 3 acts_upstream_of_or_within IDA (MGI:3611125|PMID:16322236) MGI PMID:16322236 MGI:3611125 NCBI chr10:80,392,539...80,399,531
Ensembl chr10:80,392,539...80,399,550
JBrowse link
G Smarca4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 acts_upstream_of_or_within IDA (MGI:3611125|PMID:16322236) MGI PMID:16322236 MGI:3611125 NCBI chr 9:21,616,106...21,704,230
Ensembl chr 9:21,616,169...21,704,230
JBrowse link
gene silencing by RNA-directed DNA methylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Kcnq1ot1 KCNQ1 overlapping transcript 1 acts_upstream_of_or_within IMP
IDA
(MGI:4830046|PMID:20573698)
(MGI:3054495|PMID:15340049)
MGI PMID:15340049 PMID:20573698 MGI:3054495 MGI:4830046 NCBI chr 7:143,213,111...143,296,547
Ensembl chr 7:143,203,458...143,296,549
JBrowse link
genomic imprinting term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G a nonagouti acts_upstream_of_or_within IMP (MGI:2652932|PMID:12601169) MGI PMID:12601169 MGI:2652932 NCBI chr 2:154,950,599...155,051,012
Ensembl chr 2:154,791,402...155,051,012
Ensembl chr 2:154,791,402...155,051,012
JBrowse link
G Axin1 axin 1 acts_upstream_of_or_within IMP (MGI:2652932|PMID:12601169) MGI PMID:12601169 MGI:2652932 NCBI chr17:26,131,217...26,195,811
Ensembl chr17:26,138,688...26,195,811
JBrowse link
G Cdkn1c cyclin-dependent kinase inhibitor 1C (P57) acts_upstream_of_or_within IMP (MGI:3839493|PMID:19276117) MGI PMID:19276117 MGI:3839493 NCBI chr 7:143,458,339...143,461,059
Ensembl chr 7:143,458,339...143,461,050
JBrowse link
G Ctcf CCCTC-binding factor involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 8:105,636,474...105,682,922
Ensembl chr 8:105,636,568...105,682,922
JBrowse link
G Dnmt3l DNA (cytosine-5-)-methyltransferase 3-like acts_upstream_of_or_within IMP (MGI:3663953|PMID:16920095) MGI PMID:16920095 MGI:3663953 NCBI chr10:78,042,287...78,063,622
Ensembl chr10:78,041,947...78,063,622
JBrowse link
G Gnas GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus acts_upstream_of_or_within IMP (MGI:4454202|PMID:20427744) MGI PMID:20427744 MGI:4454202 NCBI chr 2:174,284,320...174,346,744
Ensembl chr 2:174,284,320...174,346,744
JBrowse link
G Gnasas1 GNAS antisense RNA 1 acts_upstream_of_or_within IMP (MGI:4454202|PMID:20427744) MGI PMID:20427744 MGI:4454202 NCBI chr 2:174,281,237...174,295,436
Ensembl chr 2:174,281,237...174,295,436
JBrowse link
G Meg3 maternally expressed 3 acts_upstream_of_or_within IMP
IDA
(MGI:4839866|PMID:20610486)
(MGI:5465388|PMID:23195472)
MGI PMID:20610486 PMID:23195472 MGI:4839866 MGI:5465388 NCBI chr12:109,540,996...109,571,729
Ensembl chr12:109,541,001...109,571,726
JBrowse link
G Ndn necdin, MAGE family member acts_upstream_of_or_within IMP (MGI:1345919|PMID:10508517) MGI PMID:10508517 MGI:1345919 NCBI chr 7:62,348,277...62,349,928
Ensembl chr 7:62,346,569...62,350,262
JBrowse link
G Zdbf2 zinc finger, DBF-type containing 2 acts_upstream_of_or_within
involved_in
IMP
IBA
(MGI:6151717|PMID:27841881)
(MGI:6201960|PMID:21873635)
MGI
GO_Central
PMID:21873635 PMID:27841881 MGI:6151717 MGI:6201960 NCBI chr 1:63,200,358...63,314,576
Ensembl chr 1:63,273,265...63,314,576
JBrowse link
G Zfp57 zinc finger protein 57 acts_upstream_of_or_within IMP (MGI:6506156|PMID:33500348) MGI PMID:33500348 MGI:6506156 NCBI chr17:37,001,163...37,010,729
Ensembl chr17:37,001,163...37,010,635
JBrowse link
heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bahd1 bromo adjacent homology domain containing 1 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 2:118,900,336...118,924,528
Ensembl chr 2:118,900,377...118,924,528
JBrowse link
G Baz2a bromodomain adjacent to zinc finger domain, 2A acts_upstream_of_or_within IMP
IDA
(MGI:4462332|PMID:20168299)
(MGI:3653583|PMID:16678107)
MGI PMID:16678107 PMID:20168299 MGI:3653583 MGI:4462332 NCBI chr10:128,091,370...128,129,303
Ensembl chr10:128,091,577...128,129,303
JBrowse link
G Cbx3 chromobox 3 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 6:51,470,154...51,483,704
Ensembl chr 6:51,470,360...51,483,704
JBrowse link
G Cbx8 chromobox 8 acts_upstream_of_or_within ISS (MGI:1353080|PMID:10721694) MGI PMID:10721694 MGI:1353080 NCBI chr11:119,036,303...119,040,913
Ensembl chr11:119,036,305...119,040,969
JBrowse link
G Ctbp1 C-terminal binding protein 1 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 5:33,247,723...33,275,004
Ensembl chr 5:33,247,723...33,274,994
JBrowse link
G Ezh1 enhancer of zeste 1 polycomb repressive complex 2 subunit involved_in IDA (MGI:3820717|PMID:19026781) ARUK-UCL PMID:19026781 MGI:3820717 NCBI chr11:101,191,115...101,226,463
Ensembl chr11:101,191,115...101,226,463
JBrowse link
G H1f0 H1.0 linker histone involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr15:79,028,212...79,030,504
Ensembl chr15:79,028,450...79,030,504
JBrowse link
G H1f9 H1.9 linker histone involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr11:94,967,593...94,968,456
Ensembl chr11:94,967,593...94,968,456
JBrowse link
G Hells helicase, lymphoid specific acts_upstream_of_or_within IMP (MGI:3510059|PMID:15448183) MGI PMID:15448183 MGI:3510059 NCBI chr19:38,930,262...38,970,470
Ensembl chr19:38,930,915...38,971,051
JBrowse link
G Hmga2 high mobility group AT-hook 2 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr10:120,361,268...120,476,469
Ensembl chr10:120,361,275...120,476,469
JBrowse link
G Hotair HOX transcript antisense RNA (non-protein coding) acts_upstream_of_or_within IMP (MGI:5528742|PMID:24075995) MGI PMID:24075995 MGI:5528742 NCBI chr15:102,944,062...102,947,946
Ensembl chr15:102,944,062...102,947,730
JBrowse link
G Kmt2d lysine (K)-specific methyltransferase 2D involved_in IMP (MGI:4849597|PMID:20808952) UniProt PMID:20808952 MGI:4849597 NCBI chr15:98,831,669...98,874,077
Ensembl chr15:98,831,669...98,871,204
JBrowse link
G L3mbtl1 L3MBTL1 histone methyl-lysine binding protein involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 2:162,942,333...162,977,806
Ensembl chr 2:162,943,472...162,974,522
JBrowse link
G Mecp2 methyl CpG binding protein 2 acts_upstream_of_or_within IMP (MGI:3530434|PMID:15608638) MGI PMID:15608638 MGI:3530434 NCBI chr  X:74,026,592...74,085,690
Ensembl chr  X:74,026,592...74,135,363
JBrowse link
G Pole3 polymerase (DNA directed), epsilon 3 (p17 subunit) involved_in IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr 4:62,523,798...62,525,014
Ensembl chr 4:62,522,649...62,525,068
JBrowse link
G Ppm1d protein phosphatase 1D magnesium-dependent, delta isoform involved_in IDA (MGI:5551345|PMID:24135283) UniProt PMID:24135283 MGI:5551345 NCBI chr11:85,311,254...85,347,071
Ensembl chr11:85,311,244...85,347,066
JBrowse link
G Rb1 RB transcriptional corepressor 1 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr14:73,192,858...73,325,951
Ensembl chr14:73,183,673...73,325,822
JBrowse link
G Sirt1 sirtuin 1 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr10:63,319,005...63,339,035
Ensembl chr10:63,319,005...63,381,704
JBrowse link
G Smarca5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 involved_in IDA (MGI:3653583|PMID:16678107) ComplexPortal PMID:16678107 MGI:3653583 NCBI chr 8:80,699,943...80,739,459
Ensembl chr 8:80,698,507...80,739,497
JBrowse link
G Suv39h1 suppressor of variegation 3-9 1 involved_in TAS (MGI:3688024|PMID:11788710) UniProt PMID:11788710 MGI:3688024 NCBI chr  X:8,061,171...8,074,760
Ensembl chr  X:8,061,171...8,074,760
JBrowse link
G Tnp1 transition protein 1 involved_in ISO (PMID:11315969) UniProt PMID:11315969 NCBI chr 1:73,015,074...73,015,899
Ensembl chr 1:73,015,074...73,015,909
JBrowse link
G Ubr2 ubiquitin protein ligase E3 component n-recognin 2 involved_in IDA (MGI:4431162|PMID:20080676) UniProt PMID:20080676 MGI:4431162 NCBI chr17:46,928,291...47,010,886
Ensembl chr17:46,928,295...47,010,556
JBrowse link
G Uty ubiquitously transcribed tetratricopeptide repeat containing, Y-linked acts_upstream_of_or_within IMP (MGI:5305502|PMID:22192413) MGI PMID:22192413 MGI:5305502 NCBI chr  Y:1,085,187...1,245,773
Ensembl chr  Y:1,096,861...1,245,759
JBrowse link
heterochromatin assembly by small RNA term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fam172a family with sequence similarity 172, member A involved_in IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr13:77,708,677...78,166,240
Ensembl chr13:77,702,033...78,166,235
JBrowse link
G Nrde2 nrde-2 necessary for RNA interference, domain containing involved_in IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr12:100,125,450...100,160,414
Ensembl chr12:100,125,452...100,159,653
JBrowse link
G Znfx1 zinc finger, NFX1-type containing 1 involved_in IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr 2:167,035,790...167,063,015
Ensembl chr 2:167,035,793...167,063,015
JBrowse link
inactivation of X chromosome by heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Smchd1 SMC hinge domain containing 1 involved_in IMP (MGI:5532809|PMID:23754746) UniProt PMID:23754746 MGI:5532809 NCBI chr17:71,344,489...71,475,366
Ensembl chr17:71,344,489...71,475,343
JBrowse link
negative regulation of DNA methylation-dependent heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aicda activation-induced cytidine deaminase involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 6:122,553,809...122,564,180
Ensembl chr 6:122,553,801...122,564,180
JBrowse link
G Apobec1 apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1 involved_in IMP (MGI:5285126|PMID:21496894) UniProt PMID:21496894 MGI:5285126 NCBI chr 6:122,577,792...122,603,024
Ensembl chr 6:122,577,792...122,602,444
JBrowse link
G Tet1 tet methylcytosine dioxygenase 1 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr10:62,804,570...62,887,469
Ensembl chr10:62,804,570...62,908,996
JBrowse link
negative regulation of ribosomal DNA heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Phf2 PHD finger protein 2 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr13:48,801,750...48,870,885
Ensembl chr13:48,801,750...48,871,119
JBrowse link
G Phf8 PHD finger protein 8 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr  X:151,520,641...151,633,859
Ensembl chr  X:151,520,672...151,633,859
JBrowse link
pericentric heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cenpv centromere protein V involved_in ISS
IBA
ISO
(MGI:3834784|PMID:18772885)
(MGI:6201960|PMID:21873635)
UniProt
GO_Central
MGI
PMID:18772885 PMID:21873635 GO_REF:0000096 MGI:3834784 MGI:4834177 MGI:6201960 NCBI chr11:62,524,944...62,539,869
Ensembl chr11:62,524,946...62,539,261
JBrowse link
G Dicer1 dicer 1, ribonuclease type III acts_upstream_of_or_within IMP (MGI:3528782|PMID:15713842) MGI PMID:15713842 MGI:3528782 NCBI chr12:104,687,740...104,751,968
Ensembl chr12:104,687,742...104,751,952
JBrowse link
G H3f3a H3.3 histone A acts_upstream_of_or_within IGI (MGI:5694896|PMID:26159997) MGI PMID:26159997 MGI:5694896 NCBI chr 1:180,802,560...180,813,605
Ensembl chr 1:180,800,832...180,813,943
JBrowse link
G H3f3b H3.3 histone B acts_upstream_of_or_within IGI (MGI:5694896|PMID:26159997) MGI PMID:26159997 MGI:5694896 NCBI chr11:116,021,961...116,026,039
Ensembl chr11:116,021,912...116,027,962
JBrowse link
G Hells helicase, lymphoid specific involved_in IBA
IMP
(MGI:6201960|PMID:21873635)
(MGI:3041983|PMID:14612388)
GO_Central
UniProt
PMID:14612388 PMID:21873635 MGI:3041983 MGI:6201960 NCBI chr19:38,930,262...38,970,470
Ensembl chr19:38,930,915...38,971,051
JBrowse link
pericentric heterochromatin organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Wdhd1 WD repeat and HMG-box DNA binding protein 1 acts_upstream_of_or_within IMP (MGI:5317038|PMID:21266480) MGI PMID:21266480 MGI:5317038 NCBI chr14:47,240,944...47,276,861
Ensembl chr14:47,240,944...47,276,857
JBrowse link
positive regulation of DNA methylation-dependent heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atf7ip activating transcription factor 7 interacting protein involved_in ISO
IBA
(MGI:6201960|PMID:21873635) MGI
GO_Central
PMID:21873635 GO_REF:0000096 MGI:4834177 MGI:6201960 NCBI chr 6:136,518,789...136,610,850
Ensembl chr 6:136,506,167...136,610,862
JBrowse link
G Atf7ip2 activating transcription factor 7 interacting protein 2 involved_in IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr16:10,192,649...10,250,731
Ensembl chr16:10,192,712...10,251,478
JBrowse link
G Dnmt1 DNA methyltransferase (cytosine-5) 1 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 9:20,907,206...20,959,888
Ensembl chr 9:20,907,209...20,959,888
JBrowse link
G Morc2a microrchidia 2A involved_in ISO
IMP
(MGI:6271895|PMID:29728365) MGI
UniProt
PMID:29728365 GO_REF:0000096 MGI:4834177 MGI:6271895 NCBI chr11:3,649,189...3,690,477
Ensembl chr11:3,649,191...3,690,477
JBrowse link
G Morc2b microrchidia 2B involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr17:33,135,588...33,150,499
Ensembl chr17:33,113,351...33,139,683
JBrowse link
G Mphosph8 M-phase phosphoprotein 8 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr14:56,668,235...56,697,430
Ensembl chr14:56,668,248...56,697,430
JBrowse link
G Pphln1 periphilin 1 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr15:93,398,345...93,491,913
Ensembl chr15:93,398,350...93,491,510
JBrowse link
G Resf1 retroelement silencing factor 1 involved_in IMP
IBA
(MGI:6271895|PMID:29728365)
(MGI:6201960|PMID:21873635)
UniProt
GO_Central
PMID:21873635 PMID:29728365 MGI:6201960 MGI:6271895 NCBI chr 6:149,309,409...149,335,663
Ensembl chr 6:149,309,414...149,335,663
JBrowse link
G Setdb1 SET domain, bifurcated 1 involved_in IBA
ISO
IMP
(MGI:6201960|PMID:21873635)
(MGI:5440670|PMID:20164836), (MGI:6271895|PMID:29728365)
GO_Central
MGI
UniProt
PMID:20164836 PMID:21873635 PMID:29728365 GO_REF:0000096 MGI:4834177 MGI:5440670 MGI:6201960 MGI:6271895 NCBI chr 3:95,323,525...95,357,202
Ensembl chr 3:95,323,525...95,357,202
JBrowse link
G Setdb2 SET domain, bifurcated 2 involved_in IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr14:59,402,009...59,440,880
Ensembl chr14:59,402,009...59,440,884
JBrowse link
G Tasor transcription activation suppressor involved_in ISO
IBA
(MGI:6201960|PMID:21873635) MGI
GO_Central
PMID:21873635 GO_REF:0000096 MGI:4834177 MGI:6201960 NCBI chr14:27,423,674...27,483,555
Ensembl chr14:27,428,834...27,483,555
JBrowse link
G Trim28 tripartite motif-containing 28 involved_in ISO
IMP
(MGI:5440670|PMID:20164836) MGI
UniProt
PMID:20164836 GO_REF:0000096 MGI:4834177 MGI:5440670 NCBI chr 7:13,024,152...13,031,032
Ensembl chr 7:12,999,114...13,031,035
JBrowse link
positive regulation of heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdk2 cyclin-dependent kinase 2 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr10:128,697,938...128,705,051
Ensembl chr10:128,697,939...128,705,031
JBrowse link
G Sin3a transcriptional regulator, SIN3A (yeast) involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 9:57,071,991...57,128,368
Ensembl chr 9:57,072,040...57,128,366
JBrowse link
G Tpr translocated promoter region, nuclear basket protein involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 1:150,392,802...150,449,935
Ensembl chr 1:150,392,838...150,449,935
JBrowse link
rDNA heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Baz2a bromodomain adjacent to zinc finger domain, 2A involved_in
acts_upstream_of_or_within
IDA
IMP
(MGI:3587127|PMID:16085498), (MGI:3852313|PMID:12198165), (MGI:3852588|PMID:19578370)
(MGI:3653583|PMID:16678107)
(MGI:4462332|PMID:20168299)
UniProt
MGI
PMID:12198165 PMID:16085498 PMID:16678107 PMID:19578370 PMID:20168299 MGI:3587127 MGI:3653583 MGI:3852313 MGI:3852588 MGI:4462332 NCBI chr10:128,091,370...128,129,303
Ensembl chr10:128,091,577...128,129,303
JBrowse link
G Bend3 BEN domain containing 3 involved_in IBA
ISO
(MGI:6201960|PMID:21873635) GO_Central
MGI
PMID:21873635 GO_REF:0000096 MGI:4834177 MGI:6201960 NCBI chr10:43,479,134...43,515,417
Ensembl chr10:43,478,831...43,515,396
JBrowse link
G Rrp8 ribosomal RNA processing 8 involved_in ISO
IBA
(MGI:6201960|PMID:21873635) MGI
GO_Central
PMID:21873635 GO_REF:0000096 MGI:4834177 MGI:6201960 NCBI chr 7:105,731,730...105,737,385
Ensembl chr 7:105,731,730...105,737,385
JBrowse link
G Sirt1 sirtuin 1 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr10:63,319,005...63,339,035
Ensembl chr10:63,319,005...63,381,704
JBrowse link
G Smarca5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 involved_in IDA (MGI:3587127|PMID:16085498), (MGI:3852313|PMID:12198165) UniProt PMID:12198165 PMID:16085498 MGI:3587127 MGI:3852313 NCBI chr 8:80,699,943...80,739,459
Ensembl chr 8:80,698,507...80,739,497
JBrowse link
G Suv39h1 suppressor of variegation 3-9 1 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr  X:8,061,171...8,074,760
Ensembl chr  X:8,061,171...8,074,760
JBrowse link
G Ubtf upstream binding transcription factor, RNA polymerase I acts_upstream_of_or_within IMP (MGI:3836497|PMID:19103806) MGI PMID:19103806 MGI:3836497 NCBI chr11:102,304,560...102,323,649
Ensembl chr11:102,304,560...102,319,742
JBrowse link
regulation of DNA methylation-dependent heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Kdm1a lysine (K)-specific demethylase 1A involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 4:136,550,533...136,602,787
Ensembl chr 4:136,550,540...136,602,723
JBrowse link
G L3mbtl3 L3MBTL3 histone methyl-lysine binding protein involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr10:26,274,461...26,376,036
Ensembl chr10:26,274,468...26,375,971
JBrowse link
G Pou5f1 POU domain, class 5, transcription factor 1 involved_in ISO (PMID:19736317) BHF-UCL PMID:19736317 NCBI chr17:35,506,032...35,510,777
Ensembl chr17:35,506,018...35,510,772
JBrowse link
G Samd1 sterile alpha motif domain containing 1 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 8:83,997,516...84,000,415
Ensembl chr 8:83,997,501...84,000,409
Ensembl chr 8:83,997,501...84,000,409
JBrowse link
regulation of genetic imprinting term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ctr9 CTR9 homolog, Paf1/RNA polymerase II complex component acts_upstream_of_or_within IMP (MGI:5528755|PMID:24036311) MGI PMID:24036311 MGI:5528755 NCBI chr 7:111,028,951...111,056,377
Ensembl chr 7:111,028,951...111,056,377
JBrowse link
G Dppa3 developmental pluripotency-associated 3 involved_in IBA
IMP
(MGI:6201960|PMID:21873635)
(MGI:5432962|PMID:22722204), (MGI:5447615|PMID:17143267)
GO_Central
UniProt
PMID:17143267 PMID:21873635 PMID:22722204 MGI:5432962 MGI:5447615 MGI:6201960 NCBI chr 6:122,626,424...122,630,271
Ensembl chr 6:122,626,410...122,630,272
JBrowse link
G H19 H19, imprinted maternally expressed transcript acts_upstream_of_or_within IMP (MGI:1096753|PMID:9294195) MGI PMID:9294195 MGI:1096753 NCBI chr 7:142,575,530...142,578,146
Ensembl chr 7:142,575,529...142,578,143
JBrowse link
G Pik3ca phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha involved_in IDA (MGI:5009774|PMID:21047779) BHF-UCL PMID:21047779 MGI:5009774 NCBI chr 3:32,397,065...32,466,112
Ensembl chr 3:32,397,671...32,468,486
JBrowse link
G Tet1 tet methylcytosine dioxygenase 1 acts_upstream_of_or_within IMP (MGI:5559953|PMID:24291790) MGI PMID:24291790 MGI:5559953 NCBI chr10:62,804,570...62,887,469
Ensembl chr10:62,804,570...62,908,996
JBrowse link
G Trim28 tripartite motif-containing 28 acts_upstream_of_or_within IMP (MGI:5319411|PMID:22495301) MGI PMID:22495301 MGI:5319411 NCBI chr 7:13,024,152...13,031,032
Ensembl chr 7:12,999,114...13,031,035
JBrowse link
G Zfp42 zinc finger protein 42 acts_upstream_of_or_within IMP (MGI:4940138|PMID:21233130) MGI PMID:21233130 MGI:4940138 NCBI chr 8:43,295,067...43,307,009
Ensembl chr 8:43,295,063...43,306,980
JBrowse link
G Zfp445 zinc finger protein 445 involved_in IDA
ISO
IGI
(MGI:6284037|PMID:30602440) UniProt
MGI
PMID:30602440 GO_REF:0000096 MGI:4834177 MGI:6284037 NCBI chr 9:122,848,910...122,886,851
Ensembl chr 9:122,844,529...122,866,006
JBrowse link
G Zfp57 zinc finger protein 57 involved_in IGI (MGI:6284037|PMID:30602440) UniProt PMID:30602440 MGI:6284037 NCBI chr17:37,001,163...37,010,729
Ensembl chr17:37,001,163...37,010,635
JBrowse link
regulation of ribosomal DNA heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Macroh2a1 macroH2A.1 histone NOT|involved_in ISO (PMID:24071584) UniProt PMID:24071584 NCBI chr13:56,073,622...56,135,626
Ensembl chr13:56,073,619...56,136,361
JBrowse link
subtelomeric heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ezh1 enhancer of zeste 1 polycomb repressive complex 2 subunit involved_in IGI (MGI:892875|PMID:9214638) ARUK-UCL PMID:9214638 MGI:892875 NCBI chr11:101,191,115...101,226,463
Ensembl chr11:101,191,115...101,226,463
JBrowse link
G Ezh2 enhancer of zeste 2 polycomb repressive complex 2 subunit involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 6:47,530,274...47,595,270
Ensembl chr 6:47,530,139...47,595,341
JBrowse link
G H3f3a H3.3 histone A acts_upstream_of_or_within IGI (MGI:5694896|PMID:26159997) MGI PMID:26159997 MGI:5694896 NCBI chr 1:180,802,560...180,813,605
Ensembl chr 1:180,800,832...180,813,943
JBrowse link
G H3f3b H3.3 histone B acts_upstream_of_or_within IGI (MGI:5694896|PMID:26159997) MGI PMID:26159997 MGI:5694896 NCBI chr11:116,021,961...116,026,039
Ensembl chr11:116,021,912...116,027,962
JBrowse link
G Hat1 histone aminotransferase 1 involved_in IEA UniProt GO_REF:0000002 MGI:2152098 NCBI chr 2:71,389,260...71,441,622
Ensembl chr 2:71,388,958...71,441,622
JBrowse link
G Rif1 replication timing regulatory factor 1 involved_in IMP (MGI:5584328|PMID:24735877) BHF-UCL PMID:24735877 MGI:5584328 NCBI chr 2:52,072,815...52,126,769
Ensembl chr 2:52,072,832...52,122,383
JBrowse link
G Sirt6 sirtuin 6 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr10:81,621,787...81,627,792
Ensembl chr10:81,621,785...81,627,797
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 28615
    cellular process 17655
      cellular component organization or biogenesis 6530
        cellular component organization 6337
          chromatin organization 595
            heterochromatin organization 97
              heterochromatin assembly + 88
              heterochromatin boundary formation 0
              negative regulation of heterochromatin organization + 5
              pericentric heterochromatin organization + 6
              positive regulation of heterochromatin organization + 15
              regulation of heterochromatin organization + 32
              silent mating-type cassette heterochromatin organization 0
Path 2
Term Annotations click to browse term
  biological_process 28615
    cellular process 17655
      cellular component organization or biogenesis 6530
        cellular component organization 6337
          organelle organization 3856
            chromosome organization 1012
              chromatin organization 595
                heterochromatin organization 97
                  heterochromatin assembly + 88
                  heterochromatin boundary formation 0
                  negative regulation of heterochromatin organization + 5
                  pericentric heterochromatin organization + 6
                  positive regulation of heterochromatin organization + 15
                  regulation of heterochromatin organization + 32
                  silent mating-type cassette heterochromatin organization 0
paths to the root