ONTOLOGY REPORT - ANNOTATIONS
Term: heterochromatin organization
Accession: GO:0070828
browse the term
Definition: Any process that results in the specification, formation or maintenance of the physical structure of eukaryotic heterochromatin, a compact and highly condensed form of chromatin.
Synonyms: exact_synonym: heterochromatin organisation
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Hdac2
histone deacetylase 2
involved_in
ISO
(PMID:19372552)
RGD
PMID:19372552
NCBI chr20:40,548,250...40,571,609
Ensembl chr20:40,548,250...40,571,609
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Hp1bp3
heterochromatin protein 1, binding protein 3
involved_in
ISS IBA ISO IEA
GO_REF:0000024 PMID:21873635 (PMID:24830416) GO_REF:0000002 GO_REF:0000107
UniProt RGD InterPro Ensembl
PMID:24830416 PMID:21873635
GO_REF:0000002 GO_REF:0000024 GO_REF:0000107, RGD:13792537
NCBI chr 5:150,435,781...150,463,004
Ensembl chr 5:150,433,740...150,463,000
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LOC120093070
PHD finger protein 11-like
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr15:33,526,380...33,549,382
Ensembl chr15:33,453,952...33,606,470
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LOC120093163
PHD finger protein 11-like
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr15:33,453,948...33,475,669
Ensembl chr15:33,453,952...33,606,470
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Loxl2
lysyl oxidase-like 2
involved_in
ISS IEA ISO
GO_REF:0000024 GO_REF:0000107 (PMID:24239292)
UniProt Ensembl RGD
PMID:24239292
GO_REF:0000024 GO_REF:0000107
NCBI chr15:44,683,449...44,773,067
Ensembl chr15:44,683,880...44,773,067
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Mecom
MDS1 and EVI1 complex locus
involved_in
ISO
(MGI:6274969|PMID:22939622)
RGD
PMID:22939622
MGI:6274969
NCBI chr 2:112,909,353...113,464,583
Ensembl chr 2:112,909,321...113,464,590
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Mthfr
methylenetetrahydrofolate reductase
acts_upstream_of
ISO
(PMID:24769206)
RGD
PMID:24769206
NCBI chr 5:158,465,248...158,484,999
Ensembl chr 5:158,465,296...158,483,797
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Prdm16
PR/SET domain 16
involved_in
ISO
(MGI:6274969|PMID:22939622)
RGD
PMID:22939622
MGI:6274969
NCBI chr 5:164,879,864...165,203,986
Ensembl chr 5:164,880,587...165,203,601
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Setd7
SET domain containing 7, histone lysine methyltransferase
acts_upstream_of_or_within involved_in
ISO IBA
(MGI:5471848|PMID:23509280) PMID:21873635 (PMID:23509280)
RGD
PMID:23509280 PMID:21873635
MGI:5471848 , RGD:13792537
NCBI chr 2:135,562,683...135,605,468
Ensembl chr 2:135,562,683...135,605,468
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Setdb1
SET domain bifurcated histone lysine methyltransferase 1
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr 2:182,898,738...182,930,283
Ensembl chr 2:182,898,738...182,930,506
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Setdb2
SET domain bifurcated histone lysine methyltransferase 2
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr15:33,553,657...33,606,586
Ensembl chr15:33,453,952...33,606,470
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Snai1
snail family transcriptional repressor 1
involved_in
ISO
(MGI:5548026|PMID:24239292)
RGD
PMID:24239292
MGI:5548026
NCBI chr 3:156,248,479...156,252,969
Ensembl chr 3:156,248,485...156,252,969
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Dnmt1
DNA methyltransferase 1
involved_in
ISO IEA
(MGI:3687778|PMID:10615135) GO_REF:0000107
RGD Ensembl
PMID:10615135
GO_REF:0000107 MGI:3687778
NCBI chr 8:19,440,611...19,486,659
Ensembl chr 8:19,440,611...19,486,659
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Dnmt3a
DNA methyltransferase 3 alpha
acts_upstream_of_or_within
ISO
MGI:1261819 (MGI:3611125|PMID:16322236), (MGI:3768461|PMID:17938196)
RGD
PMID:16322236 PMID:17938196
MGI:3611125 MGI:3768461
NCBI chr 6:26,791,517...26,902,161
Ensembl chr 6:26,822,609...26,896,687
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Dnmt3b
DNA methyltransferase 3 beta
acts_upstream_of_or_within
ISO
MGI:1261827 (MGI:3768461|PMID:17938196)
RGD
PMID:17938196
MGI:3768461
NCBI chr 3:142,130,592...142,169,124
Ensembl chr 3:142,130,592...142,169,124
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Hdac1
histone deacetylase 1
involved_in
ISO
UniProtKB:Q9UBB5 (PMID:23770133)
RGD
PMID:23770133
NCBI chr 5:141,853,992...141,881,057
Ensembl chr 5:141,853,989...141,881,111
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Hells
helicase, lymphoid specific
involved_in
IBA ISO
PMID:21873635 (MGI:3573964|PMID:15647320)
RGD
PMID:15647320 PMID:21873635
MGI:3573964 , RGD:13792537
NCBI chr 1:236,701,704...236,748,239
Ensembl chr 1:236,701,758...236,746,844
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Kmt2b
lysine methyltransferase 2B
acts_upstream_of_or_within
ISO
MGI:3056522|MGI:3623309 (MGI:4849597|PMID:20808952)
RGD
PMID:20808952
MGI:4849597
NCBI chr 1:85,821,700...85,840,987
Ensembl chr 1:85,821,753...85,841,326
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Mbd2
methyl-CpG binding domain protein 2
involved_in
ISO
UniProtKB:Q13547 (PMID:23770133)
RGD
PMID:23770133
NCBI chr18:64,174,002...64,240,795
Ensembl chr18:64,174,002...64,240,794
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Mbd3
methyl-CpG binding domain protein 3
acts_upstream_of_or_within
ISO
(MGI:3611125|PMID:16322236)
RGD
PMID:16322236
MGI:3611125
NCBI chr 7:9,312,961...9,320,166
Ensembl chr 7:9,313,098...9,320,165
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Smarca4
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4
acts_upstream_of_or_within
ISO
(MGI:3611125|PMID:16322236)
RGD
PMID:16322236
MGI:3611125
NCBI chr 8:20,167,717...20,258,975
Ensembl chr 8:20,167,717...20,258,975
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Asip
agouti signaling protein
acts_upstream_of_or_within involved_in
ISO IEA
MGI:1855930|MGI:1855937 (MGI:2652932|PMID:12601169) GO_REF:0000107
RGD Ensembl
PMID:12601169
GO_REF:0000107 MGI:2652932
NCBI chr 3:143,473,584...143,561,170
Ensembl chr 3:143,555,696...143,561,171
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Axin1
axin 1
acts_upstream_of_or_within
ISO
MGI:1856035 (MGI:2652932|PMID:12601169)
RGD
PMID:12601169
MGI:2652932
NCBI chr10:15,163,684...15,215,615
Ensembl chr10:15,163,684...15,215,615
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Cdkn1c
cyclin-dependent kinase inhibitor 1C
acts_upstream_of_or_within
ISO
MGI:1933758|MGI:3840687 (MGI:3839493|PMID:19276117)
RGD
PMID:19276117
MGI:3839493
NCBI chr 1:198,655,394...198,658,097
Ensembl chr 1:198,655,407...198,658,048
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Ctcf
CCCTC-binding factor
involved_in
ISO
(PMID:17827499)
RGD
PMID:17827499
NCBI chr19:33,521,726...33,571,124
Ensembl chr19:33,529,319...33,571,123
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Dnmt3l
DNA methyltransferase 3 like
acts_upstream_of_or_within
ISO
MGI:2447127 (MGI:3663953|PMID:16920095)
RGD
PMID:16920095
MGI:3663953
NCBI chr20:10,614,933...10,629,516
Ensembl chr20:10,614,934...10,629,516
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Gnas
GNAS complex locus
acts_upstream_of_or_within
ISO
MGI:4459474 (MGI:4454202|PMID:20427744)
RGD
PMID:20427744
MGI:4454202
NCBI chr 3:163,071,003...163,136,350
Ensembl chr 3:163,071,417...163,127,262 Ensembl chr 3:163,071,417...163,127,262
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Ndn
necdin, MAGE family member
acts_upstream_of_or_within
ISO
MGI:2653045|MGI:2653048 (MGI:1345919|PMID:10508517)
RGD
PMID:10508517
MGI:1345919
NCBI chr 1:115,849,168...115,850,767
Ensembl chr 1:115,849,105...115,850,767
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Zdbf2
zinc finger, DBF-type containing 2
acts_upstream_of_or_within involved_in
ISO IBA
MGI:6161219 (MGI:6151717|PMID:27841881) PMID:21873635
RGD
PMID:27841881 PMID:21873635
MGI:6151717 , RGD:13792537
NCBI chr 9:64,672,974...64,748,446
Ensembl chr 9:64,709,880...64,744,265
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Zfp57
zinc finger protein 57
acts_upstream_of_or_within
ISO
MGI:3826984 (MGI:6506156|PMID:33500348)
RGD
PMID:33500348
MGI:6506156
NCBI chr20:1,521,323...1,534,884
Ensembl chr20:1,521,323...1,529,846
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AABR07027368.1
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
Ensembl chr17:26,135,927...26,136,235
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Bahd1
bromo adjacent homology domain containing 1
involved_in
ISO IBA
(PMID:19666599) PMID:21873635
RGD
PMID:19666599 PMID:21873635
RGD:13792537
NCBI chr 3:105,891,207...105,914,414
Ensembl chr 3:105,892,478...105,914,410
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Baz2a
bromodomain adjacent to zinc finger domain, 2A
acts_upstream_of_or_within
ISO
(MGI:3653583|PMID:16678107), (MGI:4462332|PMID:20168299)
RGD
PMID:16678107 PMID:20168299
MGI:3653583 MGI:4462332
NCBI chr 7:523,204...560,911
Ensembl chr 7:523,265...560,659
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Cbx3
chromobox 3
involved_in
ISO
(PMID:17540172)
RGD
PMID:17540172
NCBI chr 4:80,545,450...80,559,284
Ensembl chr 4:80,546,010...80,559,283
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Ctbp1
C-terminal binding protein 1
involved_in
ISO IEA
(PMID:21102443) GO_REF:0000107
RGD Ensembl
PMID:21102443
GO_REF:0000107
NCBI chr14:77,455,580...77,482,821
Ensembl chr14:77,455,696...77,482,821
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Dot1l
DOT1 like histone lysine methyltransferase
involved_in
IEA
GO_REF:0000002
InterPro
GO_REF:0000002
NCBI chr 7:8,917,786...8,959,474
Ensembl chr 7:8,917,786...8,956,475
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Ezh1
enhancer of zeste 1 polycomb repressive complex 2 subunit
involved_in
ISO IBA
(MGI:3820717|PMID:19026781) PMID:21873635
RGD
PMID:19026781 PMID:21873635
MGI:3820717 , RGD:13792537
NCBI chr10:86,126,023...86,162,001
Ensembl chr10:86,126,015...86,161,921
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Ezh2
enhancer of zeste 2 polycomb repressive complex 2 subunit
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr 4:76,624,399...76,687,362
Ensembl chr 4:76,624,399...76,687,362
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H1f0
H1.0 linker histone
involved_in
ISO
UniProtKB:P09429 (PMID:19158276)
RGD
PMID:19158276
NCBI chr 7:110,592,834...110,594,694
Ensembl chr 7:110,592,208...110,594,694
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Hells
helicase, lymphoid specific
acts_upstream_of_or_within
ISO
MGI:2178586 (MGI:3510059|PMID:15448183)
RGD
PMID:15448183
MGI:3510059
NCBI chr 1:236,701,704...236,748,239
Ensembl chr 1:236,701,758...236,746,844
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Hils1
histone linker H1 domain, spermatid-specific 1
involved_in
ISO
(PMID:12920187)
RGD
PMID:12920187
NCBI chr10:79,913,525...79,914,321
Ensembl chr10:79,913,480...79,914,321
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Hmga2
high mobility group AT-hook 2
involved_in
ISS ISO
GO_REF:0000024 (PMID:16901784)
UniProt RGD
PMID:16901784
GO_REF:0000024
NCBI chr 7:55,877,145...55,998,813
Ensembl chr 7:55,880,112...55,994,784
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Hmgb1
high mobility group box 1
involved_in
ISO
UniProtKB:P07305 (PMID:19158276)
RGD
PMID:19158276
NCBI chr12:5,973,062...5,978,565
Ensembl chr12:5,901,586...5,978,565
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Kmt2d
lysine methyltransferase 2D
involved_in
ISO
(MGI:4849597|PMID:20808952)
RGD
PMID:20808952
MGI:4849597
NCBI chr 7:129,980,744...130,022,088
Ensembl chr 7:129,962,887...130,020,325
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L3mbtl1
L3MBTL histone methyl-lysine binding protein 1
involved_in
ISO
(PMID:17540172)
RGD
PMID:17540172
NCBI chr 3:151,597,903...151,633,657
Ensembl chr 3:151,602,980...151,631,233
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Lmna
lamin A/C
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr 2:173,939,751...173,960,423
Ensembl chr 2:173,939,751...173,960,423
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Lmnb1
lamin B1
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr18:50,175,861...50,215,210
Ensembl chr18:50,175,874...50,214,502
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Lmnb2
lamin B2
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr 7:8,792,628...8,808,665
Ensembl chr 7:8,789,314...8,808,665
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LOC100362333
DNA-directed DNA polymerase epsilon 3
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr 7:109,236,160...109,236,825
Ensembl chr 7:109,236,321...109,236,758
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Mecp2
methyl CpG binding protein 2
acts_upstream_of_or_within
ISO
MGI:2137311 (MGI:3530434|PMID:15608638)
RGD
PMID:15608638
MGI:3530434
NCBI chr X:151,781,177...151,844,687
Ensembl chr X:151,789,930...151,844,689
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Pole3
DNA polymerase epsilon 3, accessory subunit
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr 5:75,973,941...75,977,175
Ensembl chr 5:75,974,717...75,977,231
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Ppm1d
protein phosphatase, Mg2+/Mn2+ dependent, 1D
involved_in
ISO
(MGI:5551345|PMID:24135283)
RGD
PMID:24135283
MGI:5551345
NCBI chr10:70,172,603...70,208,607
Ensembl chr10:70,172,603...70,208,607
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Rb1
RB transcriptional corepressor 1
involved_in
ISO IEA
(PMID:17540172) GO_REF:0000107
RGD Ensembl
PMID:17540172
GO_REF:0000107
NCBI chr15:48,371,295...48,502,473
Ensembl chr15:48,371,296...48,502,302
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RGD1560349
similar to histone-fold protein CHRAC17
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr17:26,135,927...26,136,417
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Sirt1
sirtuin 1
involved_in
ISO
(PMID:15469825)
RGD
PMID:15469825
NCBI chr20:25,307,143...25,329,260
Ensembl chr20:25,306,917...25,329,260
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Smarca5
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5
involved_in
ISO
(MGI:3653583|PMID:16678107)
RGD
PMID:16678107
MGI:3653583
NCBI chr19:27,271,918...27,304,594
Ensembl chr19:27,271,148...27,304,594
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Spty2d1
SPT2 chromatin protein domain containing 1
involved_in
ISO
(PMID:26109053)
RGD
PMID:26109053
NCBI chr 1:97,531,495...97,549,633
Ensembl chr 1:97,531,508...97,549,581
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Tnp1
transition protein 1
involved_in
ISO ISS
(PMID:11315969) GO_REF:0000024
RGD UniProt
PMID:11315969
GO_REF:0000024
NCBI chr 9:74,594,463...74,595,072
Ensembl chr 9:74,594,466...74,595,274
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Ubr2
ubiquitin protein ligase E3 component n-recognin 2
involved_in
ISO
(MGI:4431162|PMID:20080676)
RGD
PMID:20080676
MGI:4431162
NCBI chr 9:13,982,427...14,062,315
Ensembl chr 9:13,982,329...14,062,139
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Uty
ubiquitously transcribed tetratricopeptide repeat containing, Y-linked
acts_upstream_of_or_within
ISO
(MGI:5305502|PMID:22192413)
RGD
PMID:22192413
MGI:5305502
NCBI chr Y:942,838...1,105,313
Ensembl chr Y:924,168...1,103,422
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Fam172a
family with sequence similarity 172, member A
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr 2:7,553,873...8,018,183
Ensembl chr 2:7,553,891...8,018,162
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Znfx1
zinc finger, NFX1-type containing 1
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr 3:155,764,073...155,791,777
Ensembl chr 3:155,764,980...155,821,242
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Smchd1
structural maintenance of chromosomes flexible hinge domain containing 1
involved_in
ISO
(MGI:5532809|PMID:23754746)
RGD
PMID:23754746
MGI:5532809
NCBI chr 9:111,243,445...111,387,272
Ensembl chr 9:111,247,702...111,349,665
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Aicda
activation-induced cytidine deaminase
involved_in
ISO
(PMID:21496894)
RGD
PMID:21496894
NCBI chr 4:155,774,132...155,783,972
Ensembl chr 4:155,774,132...155,783,972
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Apobec1
apolipoprotein B mRNA editing enzyme catalytic subunit 1
involved_in
ISS ISO
GO_REF:0000024 (MGI:5285126|PMID:21496894)
UniProt RGD
PMID:21496894
GO_REF:0000024 MGI:5285126
NCBI chr 4:155,800,030...155,828,515
Ensembl chr 4:155,800,887...155,827,390
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Tet1
tet methylcytosine dioxygenase 1
involved_in
ISO
(PMID:21496894)
RGD
PMID:21496894
NCBI chr20:25,761,042...25,840,926
Ensembl chr20:25,768,120...25,833,052
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Phf2
PHD finger protein 2
involved_in
ISO
(PMID:20129925)
RGD
PMID:20129925
NCBI chr17:15,783,221...15,851,209
Ensembl chr17:15,781,864...15,851,208
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Phf8
PHD finger protein 8
involved_in
ISO
(PMID:20208542)
RGD
PMID:20208542
NCBI chr X:20,524,103...20,623,459
Ensembl chr X:20,524,558...20,623,410
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Cenpv
centromere protein V
involved_in
ISO IBA
(PMID:18772885) PMID:21873635
RGD
PMID:18772885 PMID:21873635
RGD:13792537
NCBI chr10:47,214,479...47,228,552
Ensembl chr10:47,214,490...47,228,761
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Dicer1
dicer 1 ribonuclease III
acts_upstream_of_or_within
ISO
MGI:3589287 (MGI:3528782|PMID:15713842)
RGD
PMID:15713842
MGI:3528782
NCBI chr 6:123,627,529...123,692,278
Ensembl chr 6:123,631,250...123,693,965
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H3f3a
H3.3 histone A
acts_upstream_of_or_within
ISO
MGI:1101768 (MGI:5694896|PMID:26159997)
RGD
PMID:26159997
MGI:5694896
NCBI chr13:92,533,294...92,544,903
Ensembl chr13:92,533,298...92,544,908
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H3f3b
H3.3 histone B
acts_upstream_of_or_within
ISO
MGI:1097686 (MGI:5694896|PMID:26159997)
RGD
PMID:26159997
MGI:5694896
NCBI chr10:101,256,488...101,258,712
Ensembl chr10:101,256,480...101,258,709
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Hells
helicase, lymphoid specific
involved_in
IBA ISO
PMID:21873635 (MGI:3041983|PMID:14612388)
RGD
PMID:14612388 PMID:21873635
MGI:3041983 , RGD:13792537
NCBI chr 1:236,701,704...236,748,239
Ensembl chr 1:236,701,758...236,746,844
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Sirt6
sirtuin 6
involved_in
ISO
(PMID:27043296)
RGD
PMID:27043296
NCBI chr 7:8,082,312...8,087,776
Ensembl chr 7:8,082,364...8,098,914
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Wdhd1
WD repeat and HMG-box DNA binding protein 1
acts_upstream_of_or_within
ISO
(MGI:5317038|PMID:21266480)
RGD
PMID:21266480
MGI:5317038
NCBI chr15:20,478,310...20,523,106
Ensembl chr15:20,489,291...20,523,096
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Atf7ip
activating transcription factor 7 interacting protein
involved_in
ISO IBA
(PMID:27732843) PMID:21873635
RGD
PMID:27732843 PMID:21873635
RGD:13792537
NCBI chr 4:169,385,872...169,471,652
Ensembl chr 4:169,385,872...169,471,650
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Dnmt1
DNA methyltransferase 1
involved_in
ISS IEA ISO
GO_REF:0000024 GO_REF:0000107 (PMID:24623306)
UniProt Ensembl RGD
PMID:24623306
GO_REF:0000024 GO_REF:0000107
NCBI chr 8:19,440,611...19,486,659
Ensembl chr 8:19,440,611...19,486,659
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LOC120093070
PHD finger protein 11-like
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr15:33,526,380...33,549,382
Ensembl chr15:33,453,952...33,606,470
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LOC120093163
PHD finger protein 11-like
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr15:33,453,948...33,475,669
Ensembl chr15:33,453,952...33,606,470
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Morc2
MORC family CW-type zinc finger 2
involved_in
ISO
(PMID:28581500), (PMID:29211708) (MGI:6271895|PMID:29728365)
RGD
PMID:28581500 PMID:29211708 PMID:29728365
MGI:6271895
NCBI chr14:78,529,603...78,571,375
Ensembl chr14:78,527,009...78,571,343
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Mphosph8
M-phase phosphoprotein 8
involved_in
ISS ISO
GO_REF:0000024 (PMID:28581500), (PMID:29211708)
UniProt RGD
PMID:28581500 PMID:29211708
GO_REF:0000024
NCBI chr15:30,800,546...30,828,415
Ensembl chr15:30,686,613...30,828,810
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Pphln1
periphilin 1
involved_in
ISO
(PMID:28581500)
RGD
PMID:28581500
NCBI chr 7:124,538,594...124,629,985
Ensembl chr 7:124,538,627...124,629,985
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Resf1
retroelement silencing factor 1
involved_in
ISO IBA
(MGI:6271895|PMID:29728365) PMID:21873635
RGD
PMID:29728365 PMID:21873635
MGI:6271895 , RGD:13792537
NCBI chr 4:182,325,913...182,362,054
Ensembl chr 4:182,335,454...182,362,054
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Setdb1
SET domain bifurcated histone lysine methyltransferase 1
involved_in
IBA ISO
PMID:21873635 (MGI:5440670|PMID:20164836), (MGI:6271895|PMID:29728365) (PMID:24623306), (PMID:27732843)
RGD
PMID:20164836 PMID:24623306 PMID:27732843 PMID:29728365 PMID:21873635
MGI:5440670 MGI:6271895 , RGD:13792537
NCBI chr 2:182,898,738...182,930,283
Ensembl chr 2:182,898,738...182,930,506
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Setdb2
SET domain bifurcated histone lysine methyltransferase 2
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr15:33,553,657...33,606,586
Ensembl chr15:33,453,952...33,606,470
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Tasor
transcription activation suppressor
involved_in
ISO IBA
(PMID:28581500), (PMID:29211708) PMID:21873635
RGD
PMID:28581500 PMID:29211708 PMID:21873635
RGD:13792537
NCBI chr16:2,606,807...2,669,902
Ensembl chr16:2,603,936...2,667,292
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Trim28
tripartite motif-containing 28
involved_in
ISS ISO
GO_REF:0000024 (MGI:5440670|PMID:20164836) (PMID:24623306)
UniProt RGD
PMID:20164836 PMID:24623306
GO_REF:0000024 MGI:5440670
NCBI chr 1:73,652,441...73,659,388
Ensembl chr 1:73,652,709...73,659,380
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Cdk2
cyclin dependent kinase 2
involved_in
ISO
(PMID:20935635)
RGD
PMID:20935635
NCBI chr 7:1,129,878...1,137,431
Ensembl chr 7:1,129,811...1,137,403
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Sin3a
SIN3 transcription regulator family member A
involved_in
ISO
(PMID:22783022)
RGD
PMID:22783022
NCBI chr 8:57,481,539...57,536,195
Ensembl chr 8:57,481,573...57,536,192
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Tpr
translocated promoter region, nuclear basket protein
involved_in
ISO ISS
(PMID:20407419) GO_REF:0000024
RGD UniProt
PMID:20407419
GO_REF:0000024
NCBI chr13:62,424,312...62,487,502
Ensembl chr13:62,424,312...62,487,496
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Baz2a
bromodomain adjacent to zinc finger domain, 2A
involved_in acts_upstream_of_or_within
ISO
(MGI:3587127|PMID:16085498), (MGI:3852313|PMID:12198165), (MGI:3852588|PMID:19578370) (MGI:3653583|PMID:16678107), (MGI:4462332|PMID:20168299)
RGD
PMID:12198165 PMID:16085498 PMID:16678107 PMID:19578370 PMID:20168299
MGI:3587127 MGI:3653583 MGI:3852313 MGI:3852588 MGI:4462332
NCBI chr 7:523,204...560,911
Ensembl chr 7:523,265...560,659
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Bend3
BEN domain containing 3
involved_in
ISO IBA
(PMID:26100909) PMID:21873635
RGD
PMID:26100909 PMID:21873635
RGD:13792537
NCBI chr20:46,980,246...47,017,059
Ensembl chr20:46,979,831...47,014,671
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Rrp8
ribosomal RNA processing 8
involved_in
ISS ISO IBA
GO_REF:0000024 (PMID:18485871) PMID:21873635
UniProt RGD
PMID:18485871 PMID:21873635
GO_REF:0000024, RGD:13792537
NCBI chr 1:160,081,092...160,088,709
Ensembl chr 1:160,084,295...160,089,331
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Sirt1
sirtuin 1
involved_in
ISO
(PMID:18485871)
RGD
PMID:18485871
NCBI chr20:25,307,143...25,329,260
Ensembl chr20:25,306,917...25,329,260
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Smarca5
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5
involved_in
ISO
(MGI:3587127|PMID:16085498), (MGI:3852313|PMID:12198165)
RGD
PMID:12198165 PMID:16085498
MGI:3587127 MGI:3852313
NCBI chr19:27,271,918...27,304,594
Ensembl chr19:27,271,148...27,304,594
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Suv39h1
SUV39H1 histone lysine methyltransferase
involved_in
ISO
(PMID:18485871)
RGD
PMID:18485871
NCBI chr X:14,421,028...14,434,216
Ensembl chr X:14,421,109...14,433,982
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Suv39h1-ps1
SUV39H1 histone lysine methyltransferase, pseudogene 1
involved_in
ISO
(PMID:18485871)
RGD
PMID:18485871
NCBI chr X:141,793,695...141,795,558
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Ubtf
upstream binding transcription factor
acts_upstream_of_or_within
ISO
(MGI:3836497|PMID:19103806)
RGD
PMID:19103806
MGI:3836497
NCBI chr10:87,258,217...87,274,291
Ensembl chr10:87,258,217...87,272,969
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Kdm1a
lysine demethylase 1A
involved_in
ISO
(PMID:33980486)
RGD
PMID:33980486
NCBI chr 5:148,782,976...148,838,319
Ensembl chr 5:148,782,976...148,838,319
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L3mbtl3
L3MBTL histone methyl-lysine binding protein 3
involved_in
ISO
(PMID:33980486)
RGD
PMID:33980486
NCBI chr 1:18,988,763...19,089,247
Ensembl chr 1:18,990,618...19,089,263
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Pou5f1
POU class 5 homeobox 1
involved_in
ISO
(PMID:19736317)
RGD
PMID:19736317
NCBI chr20:3,223,128...3,227,891
Ensembl chr20:3,223,129...3,227,891
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Samd1
sterile alpha motif domain containing 1
involved_in
ISO
(PMID:33980486)
RGD
PMID:33980486
NCBI chr19:24,151,136...24,154,475
Ensembl chr19:24,151,128...24,154,488
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Ctr9
CTR9 homolog, Paf1/RNA polymerase II complex component
acts_upstream_of_or_within
ISO
(MGI:5528755|PMID:24036311)
RGD
PMID:24036311
MGI:5528755
NCBI chr 1:165,137,277...165,167,303
Ensembl chr 1:165,137,215...165,167,303
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Dppa3
developmental pluripotency-associated 3
involved_in
IBA ISO ISS
PMID:21873635 (MGI:5432962|PMID:22722204), (MGI:5447615|PMID:17143267) GO_REF:0000024
RGD UniProt
PMID:17143267 PMID:22722204 PMID:21873635
GO_REF:0000024 MGI:5432962 MGI:5447615 , RGD:13792537
NCBI chr 4:155,851,461...155,854,845
Ensembl chr 4:155,815,296...155,854,861
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Dppa3l1
developmental pluripotency associated 3-like 1
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr 8:56,421,825...56,422,277
Ensembl chr 8:56,421,825...56,422,277
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LOC120096627
developmental pluripotency-associated protein 3-like
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr14:69,456,777...69,460,079
Ensembl chr14:69,457,383...69,457,859
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LOC120096971
developmental pluripotency-associated protein 3-like
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr15:27,224,329...27,232,700
Ensembl chr15:27,225,434...27,225,910
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Pik3ca
phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit alpha
involved_in
ISO
(MGI:5009774|PMID:21047779)
RGD
PMID:21047779
MGI:5009774
NCBI chr 2:115,175,275...115,249,034
Ensembl chr 2:115,174,984...115,249,032
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Tet1
tet methylcytosine dioxygenase 1
acts_upstream_of_or_within
ISO
MGI:4129024 (MGI:5559953|PMID:24291790)
RGD
PMID:24291790
MGI:5559953
NCBI chr20:25,761,042...25,840,926
Ensembl chr20:25,768,120...25,833,052
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Trim28
tripartite motif-containing 28
acts_upstream_of_or_within
ISO
MGI:1928907 (MGI:5319411|PMID:22495301)
RGD
PMID:22495301
MGI:5319411
NCBI chr 1:73,652,441...73,659,388
Ensembl chr 1:73,652,709...73,659,380
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Zfp42
zinc finger protein 42
acts_upstream_of_or_within
ISO
MGI:4125334 (MGI:4940138|PMID:21233130)
RGD
PMID:21233130
MGI:4940138
NCBI chr16:48,836,463...48,845,443
Ensembl chr16:48,836,648...48,845,401
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Zfp445
zinc finger protein 445
involved_in
ISO
(PMID:30602440) UniProtKB:Q8C6P8 (MGI:6284037|PMID:30602440)
RGD
PMID:30602440
MGI:6284037
NCBI chr 8:122,453,175...122,473,355
Ensembl chr 8:122,454,328...122,473,286
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Zfp57
zinc finger protein 57
involved_in
ISO
UniProtKB:Q8R2V3 (MGI:6284037|PMID:30602440)
RGD
PMID:30602440
MGI:6284037
NCBI chr20:1,521,323...1,534,884
Ensembl chr20:1,521,323...1,529,846
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Baz1a
bromodomain adjacent to zinc finger domain, 1A
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr 6:72,389,701...72,512,516
Ensembl chr 6:72,389,703...72,512,459
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Macroh2a1
macroH2A.1 histone
NOT|involved_in
ISO
(PMID:24071584)
RGD
PMID:24071584
NCBI chr17:8,479,331...8,542,071
Ensembl chr17:8,479,372...8,542,072
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Ezh1
enhancer of zeste 1 polycomb repressive complex 2 subunit
involved_in
ISO
UniProtKB:P38827 (MGI:892875|PMID:9214638)
RGD
PMID:9214638
MGI:892875
NCBI chr10:86,126,023...86,162,001
Ensembl chr10:86,126,015...86,161,921
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Ezh2
enhancer of zeste 2 polycomb repressive complex 2 subunit
involved_in
ISO
UniProtKB:P38827 (PMID:9214638)
RGD
PMID:9214638
NCBI chr 4:76,624,399...76,687,362
Ensembl chr 4:76,624,399...76,687,362
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H3f3a
H3.3 histone A
acts_upstream_of_or_within
ISO
MGI:1101768 (MGI:5694896|PMID:26159997)
RGD
PMID:26159997
MGI:5694896
NCBI chr13:92,533,294...92,544,903
Ensembl chr13:92,533,298...92,544,908
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H3f3b
H3.3 histone B
acts_upstream_of_or_within
ISO
MGI:1097686 (MGI:5694896|PMID:26159997)
RGD
PMID:26159997
MGI:5694896
NCBI chr10:101,256,488...101,258,712
Ensembl chr10:101,256,480...101,258,709
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Hat1
histone acetyltransferase 1
involved_in
IEA
GO_REF:0000002
InterPro
GO_REF:0000002
NCBI chr 3:56,217,344...56,265,021
Ensembl chr 3:56,217,342...56,275,517
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Rif1
replication timing regulatory factor 1
involved_in
ISO
(MGI:5584328|PMID:24735877)
RGD
PMID:24735877
MGI:5584328
NCBI chr 3:36,554,689...36,607,961
Ensembl chr 3:36,554,697...36,603,617
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Sirt6
sirtuin 6
involved_in
ISO
(PMID:21847107)
RGD
PMID:21847107
NCBI chr 7:8,082,312...8,087,776
Ensembl chr 7:8,082,364...8,098,914
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