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ONTOLOGY REPORT - ANNOTATIONS


Term:vitamin D receptor signaling pathway
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Accession:GO:0070561 term browser browse the term
Definition:The series of molecular signals generated as a consequence of a vitamin D receptor binding to one of its physiological ligands.
Synonyms:exact_synonym: VDR signaling pathway;   vitamin D receptor signalling pathway
 narrow_synonym: calcitriol signaling pathway



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vitamin D receptor signaling pathway term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pim1 Pim-1 proto-oncogene, serine/threonine kinase involved_in ISO (PMID:22720752) RGD PMID:22720752 NCBI chr20:7,554,921...7,559,174
Ensembl chr20:7,554,921...7,559,174
JBrowse link
G Vdr vitamin D receptor involved_in ISO
IEA
(PMID:16549446), (PMID:28698609)
GO_REF:0000107
RGD
Ensembl
PMID:16549446 PMID:28698609 GO_REF:0000107 NCBI chr 7:128,987,981...129,037,677
Ensembl chr 7:128,987,981...129,037,677
JBrowse link
negative regulation of vitamin D receptor signaling pathway term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Kank2 KN motif and ankyrin repeat domains 2 involved_in IBA
IEA
ISO
PMID:21873635
GO_REF:0000107
(PMID:24671081)
Ensembl
RGD
PMID:24671081 PMID:21873635 GO_REF:0000107, RGD:13792537 NCBI chr 8:20,311,676...20,341,107
Ensembl chr 8:20,311,676...20,340,900
JBrowse link
G Snai2 snail family transcriptional repressor 2 involved_in ISO (PMID:19502595) RGD PMID:19502595 NCBI chr11:86,183,800...86,186,109
Ensembl chr11:86,181,909...86,186,200
JBrowse link
positive regulation of vitamin D receptor signaling pathway term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cyp27b1 cytochrome P450, family 27, subfamily b, polypeptide 1 involved_in ISO
IEA
(PMID:16549446)
GO_REF:0000107
RGD
Ensembl
PMID:16549446 GO_REF:0000107 NCBI chr 7:62,869,340...62,876,242
Ensembl chr 7:62,871,297...62,876,241
JBrowse link
G Mn1 MN1 proto-oncogene, transcriptional regulator involved_in ISO (PMID:15890672) RGD PMID:15890672 NCBI chr12:45,184,060...45,220,102
Ensembl chr12:45,183,085...45,221,651
JBrowse link
G Rxra retinoid X receptor alpha involved_in ISO (PMID:20171278) RGD PMID:20171278 NCBI chr 3:10,989,832...11,076,366
Ensembl chr 3:10,989,832...11,073,712
JBrowse link
G Snw1 SNW domain containing 1 involved_in ISO (PMID:11514567), (PMID:9632709) RGD PMID:9632709 PMID:11514567 NCBI chr 6:107,095,450...107,119,536
Ensembl chr 6:107,095,457...107,119,536
JBrowse link
G Vdr vitamin D receptor involved_in ISO
IEA
(PMID:20171278)
GO_REF:0000107
RGD
Ensembl
PMID:20171278 GO_REF:0000107 NCBI chr 7:128,987,981...129,037,677
Ensembl chr 7:128,987,981...129,037,677
JBrowse link
regulation of vitamin D receptor signaling pathway term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Med1 mediator complex subunit 1 acts_upstream_of_or_within ISO MGI:1861125 (MGI:3655015|PMID:16324150) RGD PMID:16324150 MGI:3655015 NCBI chr10:83,145,538...83,189,260
Ensembl chr10:83,145,568...83,189,299
JBrowse link
G Snw1 SNW domain containing 1 involved_in ISO (PMID:14985122) RGD PMID:14985122 NCBI chr 6:107,095,450...107,119,536
Ensembl chr 6:107,095,457...107,119,536
JBrowse link
G Trim24 tripartite motif-containing 24 acts_upstream_of_or_within ISO MGI:3772051 (MGI:3776949|PMID:18287084) RGD PMID:18287084 MGI:3776949 NCBI chr 4:66,664,864...66,717,244
Ensembl chr 4:66,566,686...66,717,241
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19876
    cellular process 18552
      signal transduction 7117
        intracellular receptor signaling pathway 294
          vitamin D receptor signaling pathway 10
            negative regulation of vitamin D receptor signaling pathway 2
            positive regulation of vitamin D receptor signaling pathway 5
            regulation of vitamin D receptor signaling pathway + 9
Path 2
Term Annotations click to browse term
  biological_process 19876
    response to stimulus 10557
      response to external stimulus 3293
        response to extracellular stimulus 819
          response to nutrient levels 788
            response to nutrient 322
              cellular response to nutrient 71
                cellular response to vitamin 53
                  cellular response to vitamin D 36
                    vitamin D receptor signaling pathway 10
                      negative regulation of vitamin D receptor signaling pathway 2
                      positive regulation of vitamin D receptor signaling pathway 5
                      regulation of vitamin D receptor signaling pathway + 9
paths to the root