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ONTOLOGY REPORT - ANNOTATIONS


Term:tRNA threonylcarbamoyladenosine metabolic process
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Accession:GO:0070525 term browser browse the term
Definition:The chemical reactions and pathways involving tRNA threonylcarbamoyladenosine, a modified nucleoside found in some tRNA molecules.
Synonyms:exact_synonym: t6A metabolic process;   t6A metabolism;   threonylcarbamoyladenosine metabolism


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tRNA threonylcarbamoyladenosine metabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ctag2 cancer/testis antigen 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:148,421,627...148,422,921
Ensembl chr  X:148,421,627...148,422,921
JBrowse link
G Lage3 L antigen family, member 3 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:156,355,376...156,356,799
Ensembl chr  X:156,355,376...156,356,799
JBrowse link
G LOC102552182 L antigen family member 3-like IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:156,152,984...156,155,156
Ensembl chr  X:156,153,819...156,155,014
JBrowse link
G LOC685619 similar to TP53-regulating kinase (p53-related protein kinase) (Nori-2) IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:162,164,354...162,168,272
Ensembl chr 3:162,165,077...162,167,598
JBrowse link
G LOC690348 similar to ESO3 protein IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:156,227,459...156,230,351
Ensembl chr  X:156,227,830...156,228,949
JBrowse link
G Tp53rk TP53 regulating kinase IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:163,552,166...163,555,925
Ensembl chr 3:163,552,166...163,555,596
JBrowse link
mitochondrial tRNA methylation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hsd17b10 hydroxysteroid (17-beta) dehydrogenase 10 IEA
ISO
ISS
GO_REF:0000107
(PMID:25925575), (PMID:28888424)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:25925575, PMID:28888424 GO_REF:0000024, GO_REF:0000107 NCBI chr  X:21,696,796...21,699,241
Ensembl chr  X:21,696,772...21,699,241
JBrowse link
G Trmt5 tRNA methyltransferase 5 ISO
IBA
(PMID:26189817)
PMID:21873635
RGD PMID:26189817, PMID:21873635 RGD:13792537 NCBI chr 6:96,164,579...96,171,680
Ensembl chr 6:96,153,014...96,171,779
JBrowse link
mitochondrial tRNA modification term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdk5rap1 CDK5 regulatory subunit associated protein 1 ISO MGI:MGI:5750452 (MGI:MGI:5635958|PMID:25738458) RGD PMID:25738458 MGI:MGI:5635958 NCBI chr 3:149,835,953...149,870,429
Ensembl chr 3:149,703,848...149,870,413
JBrowse link
mitochondrial tRNA wobble uridine modification term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mto1 mitochondrial tRNA translation optimization 1 ISO
IBA
SGD:S000003205 (MGI:MGI:2677576|PMID:14522080)
PMID:21873635
RGD PMID:14522080, PMID:21873635 MGI:MGI:2677576, RGD:13792537 NCBI chr 8:85,807,703...85,832,263
Ensembl chr 8:85,808,125...85,831,937
JBrowse link
tRNA threonylcarbamoyladenosine modification term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Osgep O-sialoglycoprotein endopeptidase ISS
ISO
GO_REF:0000024
(PMID:28805828)
UniProt
RGD
PMID:28805828 GO_REF:0000024 NCBI chr15:27,842,447...27,849,866
Ensembl chr15:27,842,422...27,849,974
JBrowse link
G Osgepl1 O-sialoglycoprotein endopeptidase-like 1 IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr 9:53,084,042...53,098,029
Ensembl chr 9:53,084,045...53,097,979
JBrowse link
G Tprkb Tp53rk binding protein ISS
ISO
GO_REF:0000024
(PMID:28805828)
UniProt
RGD
PMID:28805828 GO_REF:0000024 NCBI chr 4:117,589,527...117,604,481
Ensembl chr 4:117,780,533...117,785,941
Ensembl chr 4:117,780,533...117,785,941
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20027
    metabolic process 12278
      organic substance metabolic process 11660
        macromolecule metabolic process 10098
          nucleic acid metabolic process 4985
            RNA metabolic process 4469
              tRNA threonylcarbamoyladenosine metabolic process 13
                mitochondrial tRNA modification + 4
                tRNA threonylcarbamoyladenosine modification + 3
Path 2
Term Annotations click to browse term
  biological_process 20027
    metabolic process 12278
      cellular metabolic process 11085
        cellular aromatic compound metabolic process 5715
          nucleobase-containing compound metabolic process 5489
            nucleic acid metabolic process 4985
              RNA metabolic process 4469
                tRNA threonylcarbamoyladenosine metabolic process 13
                  mitochondrial tRNA modification + 4
                  tRNA threonylcarbamoyladenosine modification + 3
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.