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ONTOLOGY REPORT - ANNOTATIONS


Term:actin-mediated cell contraction
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Accession:GO:0070252 term browser browse the term
Definition:The actin filament-based process in which cytoplasmic actin filaments slide past one another resulting in contraction of all or part of the cell body.


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actin-mediated cell contraction term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Actc1 actin, alpha, cardiac muscle 1 acts_upstream_of_or_within IMP (MGI:5468414|PMID:22750946) MGI PMID:22750946 MGI:5468414 NCBI chr 2:114,047,282...114,052,875
Ensembl chr 2:114,047,282...114,053,548
JBrowse link
G Emp2 epithelial membrane protein 2 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr16:10,281,749...10,313,968
Ensembl chr16:10,281,749...10,313,968
JBrowse link
G Myh2 myosin, heavy polypeptide 2, skeletal muscle, adult acts_upstream_of_or_within IDA (MGI:5468414|PMID:22750946) MGI PMID:22750946 MGI:5468414 NCBI chr11:67,171,027...67,197,517
Ensembl chr11:67,171,027...67,197,517
JBrowse link
G Parva parvin, alpha involved_in IMP (MGI:4368016|PMID:19798050) UniProt PMID:19798050 MGI:4368016 NCBI chr 7:112,427,706...112,591,688
Ensembl chr 7:112,427,505...112,591,692
JBrowse link
G Pdpn podoplanin involved_in IDA
IBA
(MGI:5614157|PMID:25341788)
(MGI:6201960|PMID:21873635)
UniProt
GO_Central
PMID:21873635 PMID:25341788 MGI:5614157 MGI:6201960 NCBI chr 4:143,267,409...143,299,564
Ensembl chr 4:143,267,431...143,299,564
JBrowse link
actin-myosin filament sliding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Actc1 actin, alpha, cardiac muscle 1 involved_in ISO
IBA
(MGI:6201960|PMID:21873635) MGI
GO_Central
PMID:21873635 GO_REF:0000096 MGI:4834177 MGI:6201960 NCBI chr 2:114,047,282...114,052,875
Ensembl chr 2:114,047,282...114,053,548
JBrowse link
G Myo9b myosin IXb acts_upstream_of_or_within ISO MGI GO_REF:0000008 MGI:2154458 NCBI chr 8:71,272,576...71,360,713
Ensembl chr 8:71,272,714...71,360,713
JBrowse link
apical constriction term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ccdc88c coiled-coil domain containing 88C involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr12:100,911,519...101,029,351
Ensembl chr12:100,911,523...101,029,056
JBrowse link
G Epb41l5 erythrocyte membrane protein band 4.1 like 5 acts_upstream_of_or_within IDA (MGI:4438998|PMID:20103536) MGI PMID:20103536 MGI:4438998 NCBI chr 1:119,545,032...119,649,096
Ensembl chr 1:119,545,037...119,649,000
JBrowse link
G Frmd6 FERM domain containing 6 acts_upstream_of_or_within IGI (MGI:5086051|PMID:21685893) MGI PMID:21685893 MGI:5086051 NCBI chr12:70,825,456...70,902,234
Ensembl chr12:70,825,514...70,902,234
JBrowse link
G Pard3 par-3 family cell polarity regulator acts_upstream_of_or_within IGI (MGI:5086051|PMID:21685893) MGI PMID:21685893 MGI:5086051 NCBI chr 8:127,063,381...127,612,286
Ensembl chr 8:127,063,893...127,612,286
JBrowse link
G Rock1 Rho-associated coiled-coil containing protein kinase 1 acts_upstream_of_or_within IGI (MGI:5086051|PMID:21685893) MGI PMID:21685893 MGI:5086051 NCBI chr18:10,064,401...10,182,251
Ensembl chr18:10,064,401...10,182,045
JBrowse link
atrial cardiac muscle cell action potential term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ank2 ankyrin 2, brain involved_in IMP
ISO
(MGI:5427070|PMID:21859974) BHF-UCL
MGI
PMID:21859974 GO_REF:0000096 MGI:4834177 MGI:5427070 NCBI chr 3:126,921,607...127,500,347
Ensembl chr 3:126,921,612...127,499,350
JBrowse link
G Kcna5 potassium voltage-gated channel, shaker-related subfamily, member 5 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 6:126,532,551...126,535,555
Ensembl chr 6:126,532,551...126,535,412
JBrowse link
G Kcne1l potassium voltage-gated channel, Isk-related family, member 1-like, pseudogene involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr  X:142,304,753...142,306,198
Ensembl chr  X:142,304,752...142,306,294
JBrowse link
G Kcnq1 potassium voltage-gated channel, subfamily Q, member 1 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 7:143,106,877...143,427,050
Ensembl chr 7:143,106,362...143,427,042
JBrowse link
G Nup155 nucleoporin 155 acts_upstream_of_or_within IMP (MGI:3839697|PMID:19070573) MGI PMID:19070573 MGI:3839697 NCBI chr15:8,109,263...8,159,859
Ensembl chr15:8,109,273...8,161,247
JBrowse link
G Scn3b sodium channel, voltage-gated, type III, beta involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 9:40,269,216...40,291,618
Ensembl chr 9:40,269,217...40,291,618
JBrowse link
G Scn5a sodium channel, voltage-gated, type V, alpha involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 9:119,483,404...119,579,030
Ensembl chr 9:119,483,408...119,579,016
JBrowse link
cardiac muscle cell action potential involved in contraction term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cacna1c calcium channel, voltage-dependent, L type, alpha 1C subunit involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 6:118,587,240...119,197,384
Ensembl chr 6:118,587,240...119,196,890
Ensembl chr 6:118,587,240...119,196,890
JBrowse link
G Cacna1d calcium channel, voltage-dependent, L type, alpha 1D subunit involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr14:30,039,941...30,491,156
Ensembl chr14:30,039,939...30,491,455
JBrowse link
G Cacna1g calcium channel, voltage-dependent, T type, alpha 1G subunit involved_in IMP (MGI:3714901|PMID:16690884) BHF-UCL PMID:16690884 MGI:3714901 NCBI chr11:94,408,391...94,474,400
Ensembl chr11:94,408,391...94,474,198
JBrowse link
G Cacna2d1 calcium channel, voltage-dependent, alpha2/delta subunit 1 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 5:15,934,264...16,374,511
Ensembl chr 5:15,934,691...16,374,511
JBrowse link
G Kcnd3 potassium voltage-gated channel, Shal-related family, member 3 acts_upstream_of_or_within IMP (MGI:6402838|PMID:32109384) MGI PMID:32109384 MGI:6402838 NCBI chr 3:105,451,890...105,674,002
Ensembl chr 3:105,452,330...105,674,002
JBrowse link
G Kcne1 potassium voltage-gated channel, Isk-related subfamily, member 1 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr16:92,346,001...92,359,468
Ensembl chr16:92,345,982...92,359,468
JBrowse link
G Kcne2 potassium voltage-gated channel, Isk-related subfamily, gene 2 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr16:92,292,389...92,298,133
Ensembl chr16:92,292,389...92,298,129
JBrowse link
G Kcnj2 potassium inwardly-rectifying channel, subfamily J, member 2 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr11:111,066,164...111,076,825
Ensembl chr11:111,066,164...111,076,821
JBrowse link
G Pkp2 plakophilin 2 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr16:16,213,345...16,272,712
Ensembl chr16:16,213,318...16,272,712
JBrowse link
G Scn1a sodium channel, voltage-gated, type I, alpha involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 2:66,270,781...66,440,837
Ensembl chr 2:66,270,778...66,440,840
JBrowse link
G Scn1b sodium channel, voltage-gated, type I, beta involved_in IBA
ISO
(MGI:6201960|PMID:21873635) GO_Central
MGI
PMID:21873635 GO_REF:0000096 MGI:4834177 MGI:6201960 NCBI chr 7:31,116,524...31,127,023
Ensembl chr 7:31,116,524...31,127,003
JBrowse link
G Scn2b sodium channel, voltage-gated, type II, beta involved_in ISO
IBA
(MGI:6201960|PMID:21873635) MGI
GO_Central
PMID:21873635 GO_REF:0000096 MGI:4834177 MGI:6201960 NCBI chr 9:45,117,876...45,130,070
Ensembl chr 9:45,117,782...45,130,070
JBrowse link
G Scn3b sodium channel, voltage-gated, type III, beta involved_in ISO
IBA
(MGI:6201960|PMID:21873635) MGI
GO_Central
PMID:21873635 GO_REF:0000096 MGI:4834177 MGI:6201960 NCBI chr 9:40,269,216...40,291,618
Ensembl chr 9:40,269,217...40,291,618
JBrowse link
G Scn4b sodium channel, type IV, beta involved_in ISO
IBA
(MGI:6201960|PMID:21873635) MGI
GO_Central
PMID:21873635 GO_REF:0000096 MGI:4834177 MGI:6201960 NCBI chr 9:45,138,624...45,154,155
Ensembl chr 9:45,138,395...45,154,152
JBrowse link
G Scn5a sodium channel, voltage-gated, type V, alpha involved_in
acts_upstream_of_or_within
ISO
IMP
(MGI:6402838|PMID:32109384) MGI PMID:32109384 GO_REF:0000096 MGI:4834177 MGI:6402838 NCBI chr 9:119,483,404...119,579,030
Ensembl chr 9:119,483,408...119,579,016
JBrowse link
cardiac muscle cell contraction term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Camk2d calcium/calmodulin-dependent protein kinase II, delta involved_in ISS
ISO
(MGI:3772026|PMID:12676814) BHF-UCL
MGI
PMID:12676814 GO_REF:0000096 MGI:3772026 MGI:4417868 NCBI chr 3:126,595,487...126,846,326
Ensembl chr 3:126,596,302...126,846,326
JBrowse link
G Gsn gelsolin involved_in IMP (MGI:6450443|PMID:30568254) BHF-UCL PMID:30568254 MGI:6450443 NCBI chr 2:35,256,359...35,307,902
Ensembl chr 2:35,256,380...35,307,892
JBrowse link
G Pik3ca phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha involved_in IMP (MGI:6450443|PMID:30568254) BHF-UCL PMID:30568254 MGI:6450443 NCBI chr 3:32,397,065...32,466,112
Ensembl chr 3:32,397,671...32,468,486
JBrowse link
G Sgcd sarcoglycan, delta (dystrophin-associated glycoprotein) acts_upstream_of_or_within IMP (MGI:1343715|PMID:10481911) MGI PMID:10481911 MGI:1343715 NCBI chr11:46,971,077...47,989,451
Ensembl chr11:46,896,253...47,988,969
JBrowse link
G Slc9a1 solute carrier family 9 (sodium/hydrogen exchanger), member 1 ISO RGD PMID:20868366 RGD:7349316 NCBI chr 4:133,369,711...133,423,702
Ensembl chr 4:133,369,706...133,423,702
JBrowse link
G Uty ubiquitously transcribed tetratricopeptide repeat containing, Y-linked acts_upstream_of_or_within IMP (MGI:5305502|PMID:22192413) MGI PMID:22192413 MGI:5305502 NCBI chr  Y:1,085,187...1,245,773
Ensembl chr  Y:1,096,861...1,245,759
JBrowse link
cytoplasmic actin-based contraction involved in cell motility term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Limch1 LIM and calponin homology domains 1 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 5:66,745,889...67,057,159
Ensembl chr 5:66,745,827...67,057,158
JBrowse link
G Shtn1 shootin 1 involved_in ISO MGI GO_REF:0000096 MGI:4417868 NCBI chr19:58,973,358...59,076,124
Ensembl chr19:58,973,356...59,076,100
JBrowse link
G Vil1 villin 1 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 1:74,409,384...74,435,560
Ensembl chr 1:74,409,376...74,435,559
JBrowse link
membrane depolarization during atrial cardiac muscle cell action potential term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cacna1c calcium channel, voltage-dependent, L type, alpha 1C subunit involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 6:118,587,240...119,197,384
Ensembl chr 6:118,587,240...119,196,890
Ensembl chr 6:118,587,240...119,196,890
JBrowse link
G Cacnb2 calcium channel, voltage-dependent, beta 2 subunit involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 2:14,603,861...14,988,811
Ensembl chr 2:14,603,088...14,987,908
JBrowse link
G Scn5a sodium channel, voltage-gated, type V, alpha involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 9:119,483,404...119,579,030
Ensembl chr 9:119,483,408...119,579,016
JBrowse link
membrane repolarization during atrial cardiac muscle cell action potential term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Kcna5 potassium voltage-gated channel, shaker-related subfamily, member 5 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 6:126,532,551...126,535,555
Ensembl chr 6:126,532,551...126,535,412
JBrowse link
G Kcnj5 potassium inwardly-rectifying channel, subfamily J, member 5 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 9:32,314,706...32,344,380
Ensembl chr 9:32,314,707...32,344,350
JBrowse link
G Kcnn2 potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2 involved_in IMP (MGI:5292192|PMID:19139040) BHF-UCL PMID:19139040 MGI:5292192 NCBI chr18:45,268,750...45,685,887
Ensembl chr18:45,268,860...45,686,024
JBrowse link
G Kcnq1 potassium voltage-gated channel, subfamily Q, member 1 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 7:143,106,877...143,427,050
Ensembl chr 7:143,106,362...143,427,042
JBrowse link
membrane repolarization during ventricular cardiac muscle cell action potential term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Kcne1 potassium voltage-gated channel, Isk-related subfamily, member 1 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr16:92,346,001...92,359,468
Ensembl chr16:92,345,982...92,359,468
JBrowse link
G Kcne2 potassium voltage-gated channel, Isk-related subfamily, gene 2 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr16:92,292,389...92,298,133
Ensembl chr16:92,292,389...92,298,129
JBrowse link
G Kcnh2 potassium voltage-gated channel, subfamily H (eag-related), member 2 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 5:24,319,589...24,351,684
Ensembl chr 5:24,319,589...24,351,604
JBrowse link
G Kcnj8 potassium inwardly-rectifying channel, subfamily J, member 8 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 6:142,564,837...142,571,614
Ensembl chr 6:142,564,837...142,571,614
JBrowse link
G Kcnq1 potassium voltage-gated channel, subfamily Q, member 1 involved_in IBA
ISO
(MGI:6201960|PMID:21873635) GO_Central
MGI
PMID:21873635 GO_REF:0000096 MGI:4834177 MGI:6201960 NCBI chr 7:143,106,877...143,427,050
Ensembl chr 7:143,106,362...143,427,042
JBrowse link
muscle filament sliding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Myh6 myosin, heavy polypeptide 6, cardiac muscle, alpha involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr14:54,941,921...54,968,017
Ensembl chr14:54,941,921...54,966,927
JBrowse link
G Myh7 myosin, heavy polypeptide 7, cardiac muscle, beta involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr14:54,970,684...54,994,626
Ensembl chr14:54,970,684...54,994,626
JBrowse link
G Myh8 myosin, heavy polypeptide 8, skeletal muscle, perinatal involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr11:67,277,124...67,308,634
Ensembl chr11:67,277,124...67,308,634
JBrowse link
G Myl6 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle involved_in TAS (MGI:3687446|PMID:2304459) HGNC-UCL PMID:2304459 MGI:3687446 NCBI chr10:128,490,859...128,493,886
Ensembl chr10:128,490,860...128,494,145
JBrowse link
G Myl6b myosin, light polypeptide 6B involved_in TAS (MGI:3687446|PMID:2304459) HGNC-UCL PMID:2304459 MGI:3687446 NCBI chr10:128,494,157...128,498,685
Ensembl chr10:128,494,157...128,498,685
JBrowse link
G Tnnt2 troponin T2, cardiac involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 1:135,836,315...135,852,268
Ensembl chr 1:135,836,354...135,852,260
JBrowse link
G Tpm1 tropomyosin 1, alpha involved_in ISO MGI GO_REF:0000096 MGI:4417868 NCBI chr 9:67,022,590...67,049,672
Ensembl chr 9:67,022,590...67,049,406
JBrowse link
myofibroblast contraction term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Epdr1 ependymin related protein 1 (zebrafish) involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr13:19,591,708...19,619,830
Ensembl chr13:19,591,706...19,619,927
JBrowse link
negative regulation of hepatic stellate cell contraction term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nos1 nitric oxide synthase 1, neuronal involved_in ISO RGD
MGI
PMID:10727442 GO_REF:0000096 MGI:4417868 RGD:13824993 NCBI chr 5:117,866,839...117,958,840
Ensembl chr 5:117,781,032...117,958,840
JBrowse link
negative regulation of membrane repolarization during ventricular cardiac muscle cell action potential term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Kcne3 potassium voltage-gated channel, Isk-related subfamily, gene 3 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 7:100,176,507...100,184,869
Ensembl chr 7:100,176,502...100,184,869
JBrowse link
negative regulation of muscle filament sliding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dbn1 drebrin 1 involved_in ISO RGD
MGI
PMID:17543276 GO_REF:0000096 MGI:4417868 RGD:10398727 NCBI chr13:55,473,428...55,488,126
Ensembl chr13:55,473,429...55,488,111
JBrowse link
negative regulation of ventricular cardiac muscle cell action potential term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bin1 bridging integrator 1 involved_in IMP (MGI:5583915|PMID:24836577) ARUK-UCL PMID:24836577 MGI:5583915 NCBI chr18:32,376,618...32,435,740
Ensembl chr18:32,377,230...32,435,737
JBrowse link
positive regulation of atrial cardiac muscle cell action potential term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Trpm4 transient receptor potential cation channel, subfamily M, member 4 involved_in ISO RGD
MGI
PMID:23954346 GO_REF:0000096 MGI:4417868 RGD:10003031 NCBI chr 7:45,303,155...45,334,071
Ensembl chr 7:45,302,632...45,333,780
JBrowse link
positive regulation of cardiac muscle cell contraction term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cacna1h calcium channel, voltage-dependent, T type, alpha 1H subunit involved_in ISO RGD
MGI
PMID:19443576 GO_REF:0000096 MGI:4417868 RGD:7205486 NCBI chr17:25,374,285...25,436,334
Ensembl chr17:25,374,285...25,433,783
JBrowse link
G Strit1 small transmembrane regulator of ion transport 1 involved_in IMP (MGI:6304509|PMID:30299255) UniProt PMID:30299255 MGI:6304509 NCBI chr 3:63,481,095...63,483,906
Ensembl chr 3:63,481,112...63,483,879
JBrowse link
positive regulation of hepatic stellate cell contraction term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acta2 actin alpha 2, smooth muscle, aorta involved_in ISO RGD
MGI
PMID:24204762 GO_REF:0000096 MGI:4417868 RGD:12879446 NCBI chr19:34,240,336...34,255,585
Ensembl chr19:34,241,090...34,255,590
JBrowse link
positive regulation of myofibroblast contraction term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ptger3 prostaglandin E receptor 3 (subtype EP3) involved_in ISO RGD
MGI
PMID:19239477 GO_REF:0000096 MGI:4417868 RGD:10045899 NCBI chr 3:157,566,821...157,644,758
Ensembl chr 3:157,566,892...157,645,888
JBrowse link
positive regulation of voltage-gated potassium channel activity involved in ventricular cardiac muscle cell action potential repolarization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rnf207 ring finger protein 207 involved_in ISO
IBA
(MGI:6201960|PMID:21873635) MGI
GO_Central
PMID:21873635 GO_REF:0000096 MGI:4834177 MGI:6201960 NCBI chr 4:152,307,018...152,319,076
Ensembl chr 4:152,307,019...152,318,993
JBrowse link
regulation of atrial cardiac muscle cell action potential term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ank2 ankyrin 2, brain involved_in IMP
ISO
(MGI:2449848|PMID:12571597) BHF-UCL
MGI
PMID:12571597 GO_REF:0000096 MGI:2449848 MGI:4834177 NCBI chr 3:126,921,607...127,500,347
Ensembl chr 3:126,921,612...127,499,350
JBrowse link
G Gja5 gap junction protein, alpha 5 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 3:97,032,402...97,053,634
Ensembl chr 3:96,904,693...97,077,416
JBrowse link
G Ryr2 ryanodine receptor 2, cardiac involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr13:11,553,099...12,106,945
Ensembl chr13:11,553,102...12,106,945
JBrowse link
regulation of cardiac muscle cell action potential involved in regulation of contraction term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Akap9 A kinase (PRKA) anchor protein (yotiao) 9 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 5:3,927,736...4,080,204
Ensembl chr 5:3,928,054...4,081,310
JBrowse link
G Atp2a2 ATPase, Ca++ transporting, cardiac muscle, slow twitch 2 involved_in ISO MGI GO_REF:0000096 MGI:4417868 NCBI chr 5:122,453,513...122,502,225
Ensembl chr 5:122,453,513...122,502,225
JBrowse link
G Cav3 caveolin 3 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 6:112,459,505...112,472,872
Ensembl chr 6:112,459,505...112,472,872
JBrowse link
G Fgf13 fibroblast growth factor 13 involved_in IMP (MGI:5437408|PMID:21817159) BHF-UCL PMID:21817159 MGI:5437408 NCBI chr  X:59,062,139...59,585,572
Ensembl chr  X:59,062,145...59,568,071
JBrowse link
G Hcn4 hyperpolarization-activated, cyclic nucleotide-gated K+ 4 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 9:58,822,949...58,863,175
Ensembl chr 9:58,823,412...58,863,175
JBrowse link
G Rangrf RAN guanine nucleotide release factor involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr11:68,972,484...68,975,185
Ensembl chr11:68,972,484...68,975,185
JBrowse link
regulation of cardiac muscle cell contraction term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adora1 adenosine A1 receptor involved_in ISO RGD
MGI
PMID:19525381 GO_REF:0000096 MGI:4417868 RGD:2317914 NCBI chr 1:134,199,215...134,235,457
Ensembl chr 1:134,199,223...134,235,431
JBrowse link
G Adrb1 adrenergic receptor, beta 1 involved_in ISO RGD
MGI
PMID:19525381 PMID:22216755 GO_REF:0000096 MGI:4417868 RGD:2317914 RGD:6893639 NCBI chr19:56,722,117...56,725,150
Ensembl chr19:56,722,199...56,733,113
JBrowse link
G Akap6 A kinase (PRKA) anchor protein 6 involved_in ISO MGI GO_REF:0000096 MGI:4417868 NCBI chr12:52,698,588...53,155,568
Ensembl chr12:52,699,383...53,155,599
JBrowse link
G Ank2 ankyrin 2, brain involved_in IMP
ISO
(MGI:3771114|PMID:17242276) BHF-UCL
MGI
PMID:17242276 GO_REF:0000096 MGI:3771114 MGI:4834177 NCBI chr 3:126,921,607...127,500,347
Ensembl chr 3:126,921,612...127,499,350
JBrowse link
G Atp1a1 ATPase, Na+/K+ transporting, alpha 1 polypeptide involved_in ISO RGD
MGI
PMID:15629895 GO_REF:0000096 MGI:4417868 RGD:6903236 NCBI chr 3:101,576,219...101,604,707
Ensembl chr 3:101,576,219...101,604,684
JBrowse link
G Atp1a2 ATPase, Na+/K+ transporting, alpha 2 polypeptide involved_in ISO RGD
MGI
PMID:17442282 GO_REF:0000096 MGI:4417868 RGD:6903343 NCBI chr 1:172,271,709...172,298,064
Ensembl chr 1:172,271,709...172,298,064
JBrowse link
G Casq2 calsequestrin 2 involved_in ISO MGI GO_REF:0000096 MGI:4417868 NCBI chr 3:102,086,415...102,146,514
Ensembl chr 3:102,086,415...102,146,514
JBrowse link
G Fxyd1 FXYD domain-containing ion transport regulator 1 involved_in ISO RGD
MGI
PMID:14684371 GO_REF:0000096 MGI:4417868 RGD:9685468 NCBI chr 7:31,051,678...31,055,873
Ensembl chr 7:31,051,678...31,057,199
JBrowse link
G Gata4 GATA binding protein 4 involved_in ISO RGD
MGI
PMID:21702924 GO_REF:0000096 MGI:4417868 RGD:7207043 NCBI chr14:63,198,914...63,271,712
Ensembl chr14:63,198,922...63,271,692
JBrowse link
G Kcnj2 potassium inwardly-rectifying channel, subfamily J, member 2 involved_in ISO RGD
MGI
PMID:22426100 GO_REF:0000096 MGI:4417868 RGD:7247430 NCBI chr11:111,066,164...111,076,825
Ensembl chr11:111,066,164...111,076,821
JBrowse link
G Pde4b phosphodiesterase 4B, cAMP specific involved_in IMP (MGI:5286798|PMID:21670503) BHF-UCL PMID:21670503 MGI:5286798 NCBI chr 4:102,087,332...102,607,275
Ensembl chr 4:102,087,543...102,607,259
JBrowse link
G Pde4d phosphodiesterase 4D, cAMP specific involved_in IBA
ISO
IMP
(MGI:6201960|PMID:21873635)
(MGI:5286798|PMID:21670503), (MGI:5442270|PMID:21903937)
GO_Central
MGI
RGD
BHF-UCL
PMID:19801680 PMID:21670503 PMID:21873635 PMID:21903937 GO_REF:0000096 MGI:4417868 MGI:5286798 MGI:5442270 MGI:6201960 RGD:7327160 NCBI chr13:108,654,177...109,955,969
Ensembl chr13:108,449,948...109,953,461
JBrowse link
G Pln phospholamban acts_upstream_of_or_within IMP (MGI:3655311|PMID:8620604) MGI PMID:8620604 MGI:3655311 NCBI chr10:53,337,686...53,345,999
Ensembl chr10:53,337,667...53,345,987
JBrowse link
G Scn5a sodium channel, voltage-gated, type V, alpha acts_upstream_of_or_within
involved_in
IMP
ISO
(MGI:3695100|PMID:16172272) MGI PMID:16172272 GO_REF:0000096 MGI:3695100 MGI:4834177 NCBI chr 9:119,483,404...119,579,030
Ensembl chr 9:119,483,408...119,579,016
JBrowse link
G Sri sorcin involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 5:8,046,078...8,069,314
Ensembl chr 5:8,046,078...8,069,379
JBrowse link
G Stc1 stanniocalcin 1 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr14:69,029,289...69,041,401
Ensembl chr14:69,029,238...69,041,804
JBrowse link
G Sumo1 small ubiquitin-like modifier 1 involved_in IMP (MGI:5292424|PMID:21900893) BHF-UCL PMID:21900893 MGI:5292424 NCBI chr 1:59,639,434...59,670,834
Ensembl chr 1:59,586,558...59,670,834
JBrowse link
regulation of membrane repolarization during atrial cardiac muscle cell action potential term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Flna filamin, alpha involved_in IC (MGI:5578267|PMID:24951510) BHF-UCL PMID:24951510 MGI:5578267 NCBI chr  X:74,223,461...74,249,854
Ensembl chr  X:74,223,461...74,249,820
JBrowse link
regulation of muscle filament sliding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mylk2 myosin, light polypeptide kinase 2, skeletal muscle involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 2:152,911,281...152,923,065
Ensembl chr 2:152,911,352...152,923,068
JBrowse link
regulation of muscle filament sliding speed term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tnnc1 troponin C, cardiac/slow skeletal involved_in IMP (MGI:3793933|PMID:10747195) BHF-UCL PMID:10747195 MGI:3793933 NCBI chr14:31,208,312...31,211,729
Ensembl chr14:31,208,312...31,211,729
JBrowse link
G Tnnt2 troponin T2, cardiac involved_in ISO MGI GO_REF:0000096 MGI:4417868 NCBI chr 1:135,836,315...135,852,268
Ensembl chr 1:135,836,354...135,852,260
JBrowse link
regulation of myofibroblast contraction term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pdpn podoplanin involved_in IBA
IMP
(MGI:6201960|PMID:21873635)
(MGI:5644359|PMID:25347465)
GO_Central
UniProt
PMID:21873635 PMID:25347465 MGI:5644359 MGI:6201960 NCBI chr 4:143,267,409...143,299,564
Ensembl chr 4:143,267,431...143,299,564
JBrowse link
regulation of ventricular cardiac muscle cell action potential term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cacna1c calcium channel, voltage-dependent, L type, alpha 1C subunit involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 6:118,587,240...119,197,384
Ensembl chr 6:118,587,240...119,196,890
Ensembl chr 6:118,587,240...119,196,890
JBrowse link
G Cav1 caveolin 1, caveolae protein involved_in IMP (MGI:5607357|PMID:25017399) BHF-UCL PMID:25017399 MGI:5607357 NCBI chr 6:17,306,335...17,341,328
Ensembl chr 6:17,306,335...17,341,452
JBrowse link
G Ctnna3 catenin (cadherin associated protein), alpha 3 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr10:63,430,098...65,003,667
Ensembl chr10:63,430,098...65,003,667
JBrowse link
G Dlg1 discs large MAGUK scaffold protein 1 involved_in IMP (MGI:5816439|PMID:25447080) BHF-UCL PMID:25447080 MGI:5816439 NCBI chr16:31,663,443...31,873,356
Ensembl chr16:31,663,443...31,875,129
JBrowse link
G Dsc2 desmocollin 2 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr18:20,030,633...20,059,554
Ensembl chr18:20,030,633...20,059,554
JBrowse link
G Dsg2 desmoglein 2 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr18:20,558,074...20,604,526
Ensembl chr18:20,558,074...20,604,521
JBrowse link
G Dsp desmoplakin involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr13:38,151,294...38,198,577
Ensembl chr13:38,151,294...38,198,577
JBrowse link
G Jup junction plakoglobin involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr11:100,368,856...100,397,839
Ensembl chr11:100,368,958...100,397,763
JBrowse link
G Pkp2 plakophilin 2 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr16:16,213,345...16,272,712
Ensembl chr16:16,213,318...16,272,712
JBrowse link
G Ryr2 ryanodine receptor 2, cardiac involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr13:11,553,099...12,106,945
Ensembl chr13:11,553,102...12,106,945
JBrowse link
G Trpm4 transient receptor potential cation channel, subfamily M, member 4 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 7:45,303,155...45,334,071
Ensembl chr 7:45,302,632...45,333,780
JBrowse link
ventricular cardiac muscle cell action potential term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ank2 ankyrin 2, brain involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 3:126,921,607...127,500,347
Ensembl chr 3:126,921,612...127,499,350
JBrowse link
G Cav3 caveolin 3 involved_in ISO MGI GO_REF:0000096 MGI:4417868 NCBI chr 6:112,459,505...112,472,872
Ensembl chr 6:112,459,505...112,472,872
JBrowse link
G Gja5 gap junction protein, alpha 5 acts_upstream_of_or_within IMP (MGI:1197846|PMID:9501070) MGI PMID:9501070 MGI:1197846 NCBI chr 3:97,032,402...97,053,634
Ensembl chr 3:96,904,693...97,077,416
JBrowse link
G Gpd1l glycerol-3-phosphate dehydrogenase 1-like involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 9:114,899,339...114,933,987
Ensembl chr 9:114,899,341...114,933,987
JBrowse link
G Kcne1 potassium voltage-gated channel, Isk-related subfamily, member 1 involved_in IBA
ISO
(MGI:6201960|PMID:21873635) GO_Central
MGI
PMID:21873635 GO_REF:0000096 MGI:4834177 MGI:6201960 NCBI chr16:92,346,001...92,359,468
Ensembl chr16:92,345,982...92,359,468
JBrowse link
G Kcne1l potassium voltage-gated channel, Isk-related family, member 1-like, pseudogene involved_in ISO
IBA
(MGI:6201960|PMID:21873635) MGI
GO_Central
PMID:21873635 GO_REF:0000096 MGI:4834177 MGI:6201960 NCBI chr  X:142,304,753...142,306,198
Ensembl chr  X:142,304,752...142,306,294
JBrowse link
G Kcne2 potassium voltage-gated channel, Isk-related subfamily, gene 2 acts_upstream_of_or_within
involved_in
IMP
IBA
ISO
(MGI:3813163|PMID:18603586)
(MGI:6201960|PMID:21873635)
MGI
GO_Central
PMID:18603586 PMID:21873635 GO_REF:0000096 MGI:3813163 MGI:4834177 MGI:6201960 NCBI chr16:92,292,389...92,298,133
Ensembl chr16:92,292,389...92,298,129
JBrowse link
G Kcne3 potassium voltage-gated channel, Isk-related subfamily, gene 3 involved_in IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr 7:100,176,507...100,184,869
Ensembl chr 7:100,176,502...100,184,869
JBrowse link
G Kcne4 potassium voltage-gated channel, Isk-related subfamily, gene 4 involved_in IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr 1:78,816,911...78,820,032
Ensembl chr 1:78,816,758...78,820,028
JBrowse link
G Kcnh2 potassium voltage-gated channel, subfamily H (eag-related), member 2 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 5:24,319,589...24,351,684
Ensembl chr 5:24,319,589...24,351,604
JBrowse link
G Kcnq1 potassium voltage-gated channel, subfamily Q, member 1 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 7:143,106,877...143,427,050
Ensembl chr 7:143,106,362...143,427,042
JBrowse link
G Nedd4l neural precursor cell expressed, developmentally down-regulated gene 4-like involved_in ISO PMID:22879586 BHF-UCL PMID:22879586 RGD:8553349 NCBI chr18:64,884,480...65,217,826
Ensembl chr18:64,887,705...65,217,828
JBrowse link
G Pkp2 plakophilin 2 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr16:16,213,345...16,272,712
Ensembl chr16:16,213,318...16,272,712
JBrowse link
G Ryr2 ryanodine receptor 2, cardiac involved_in IMP (MGI:3820489|PMID:17872467) BHF-UCL PMID:17872467 MGI:3820489 NCBI chr13:11,553,099...12,106,945
Ensembl chr13:11,553,102...12,106,945
JBrowse link
G Scn3b sodium channel, voltage-gated, type III, beta involved_in
acts_upstream_of_or_within
IBA
IMP
ISO
(MGI:6201960|PMID:21873635)
(MGI:5294649|PMID:19351516)
GO_Central
MGI
PMID:19351516 PMID:21873635 GO_REF:0000096 MGI:4834177 MGI:5294649 MGI:6201960 NCBI chr 9:40,269,216...40,291,618
Ensembl chr 9:40,269,217...40,291,618
JBrowse link
G Scn5a sodium channel, voltage-gated, type V, alpha involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 9:119,483,404...119,579,030
Ensembl chr 9:119,483,408...119,579,016
JBrowse link
G Snta1 syntrophin, acidic 1 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 2:154,376,313...154,408,107
Ensembl chr 2:154,376,313...154,408,099
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 28616
    cellular process 17619
      actin filament-based process 825
        actin filament-based movement 130
          actin-mediated cell contraction 99
            actin-myosin filament sliding + 12
            apical constriction + 5
            cardiac muscle cell contraction + 71
            cytoplasmic actin-based contraction involved in cell motility + 3
            hepatic stellate cell contraction + 2
            myofibroblast contraction + 3
paths to the root