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ONTOLOGY REPORT - ANNOTATIONS


Term:synaptonemal complex organization
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Accession:GO:0070193 term browser browse the term
Definition:A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a synaptonemal complex. A synaptonemal complex is a proteinaceous scaffold formed between homologous chromosomes during meiosis.
Synonyms:exact_synonym: synaptonemal complex organisation


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synaptonemal complex organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ube2b ubiquitin-conjugating enzyme E2B acts_upstream_of_or_within ISO MGI:2183933 (MGI:2450033|PMID:12556476), (MGI:3720437|PMID:17488778) RGD PMID:12556476 PMID:17488778 MGI:2450033 MGI:3720437 NCBI chr10:36,248,434...36,263,379
Ensembl chr10:36,248,438...36,264,665
JBrowse link
lateral element assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sycp1 synaptonemal complex protein 1 involved_in
acts_upstream_of_or_within
IBA
ISO
IEA
PMID:21873635
MGI:109542 (MGI:5315075|PMID:22164254)
GO_REF:0000107
RGD
Ensembl
PMID:22164254 PMID:21873635 GO_REF:0000107 MGI:5315075, RGD:13792537 NCBI chr 2:190,296,688...190,456,687
Ensembl chr 2:190,296,954...190,456,737
JBrowse link
G Sycp3 synaptonemal complex protein 3 acts_upstream_of_or_within ISO MGI:105931 (MGI:5315075|PMID:22164254) RGD PMID:22164254 MGI:5315075 NCBI chr 7:22,874,055...22,888,512
Ensembl chr 7:22,874,055...22,888,511
JBrowse link
synaptonemal complex assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ago4 argonaute RISC component 4 acts_upstream_of_or_within ISO MGI:5438526 (MGI:5437526|PMID:22863743) RGD PMID:22863743 MGI:5437526 NCBI chr 5:138,780,450...138,825,889
Ensembl chr 5:138,783,069...138,825,632
JBrowse link
G Bag6 BAG cochaperone 6 involved_in ISS
ISO
GO_REF:0000024
(MGI:3808636|PMID:18678708)
UniProt
RGD
PMID:18678708 GO_REF:0000024 MGI:3808636 NCBI chr20:3,675,938...3,690,414
Ensembl chr20:3,675,938...3,688,657
JBrowse link
G Cpeb1 cytoplasmic polyadenylation element binding protein 1 acts_upstream_of_or_within ISO MGI:3606747 (MGI:2664436|PMID:12815066), (MGI:3606735|PMID:11702780) RGD PMID:11702780 PMID:12815066 MGI:2664436 MGI:3606735 NCBI chr 1:135,300,048...135,407,688
Ensembl chr 1:135,300,461...135,409,760
JBrowse link
G Ehmt2 euchromatic histone lysine methyltransferase 2 acts_upstream_of_or_within ISO MGI:3718790 (MGI:3717933|PMID:17599069) RGD PMID:17599069 MGI:3717933 NCBI chr20:3,919,623...3,936,751
Ensembl chr20:3,919,624...3,941,547
JBrowse link
G Hormad1 HORMA domain containing 1 involved_in ISS
ISO
IBA
GO_REF:0000024
(MGI:5009722|PMID:21478856)
PMID:21873635
UniProt
RGD
PMID:21478856 PMID:21873635 GO_REF:0000024 MGI:5009722, RGD:13792537 NCBI chr 2:183,115,815...183,152,383
Ensembl chr 2:183,116,716...183,152,383
JBrowse link
G LOC689986 hypothetical protein LOC689986 involved_in ISO (MGI:6400008|PMID:30949703) RGD PMID:30949703 MGI:6400008 NCBI chr14:2,230,404...2,270,782
Ensembl chr14:2,231,451...2,270,782
JBrowse link
G Mcmdc2 minichromosome maintenance domain containing 2 acts_upstream_of_or_within ISO MGI:2178050|MGI:5511194 (MGI:5805564|PMID:27760146) RGD PMID:27760146 MGI:5805564 NCBI chr 5:9,291,967...9,337,526
Ensembl chr 5:9,298,101...9,338,300
JBrowse link
G Meioc meiosis specific with coiled-coil domain involved_in ISO (MGI:5770021|PMID:26742488) RGD PMID:26742488 MGI:5770021 NCBI chr10:87,628,807...87,646,485
Ensembl chr10:87,628,875...87,646,752
JBrowse link
G Mlh3 mutL homolog 3 acts_upstream_of_or_within ISO MGI:2384218 (MGI:3612193|PMID:16260499) RGD PMID:16260499 MGI:3612193 NCBI chr 6:104,881,483...104,917,686
Ensembl chr 6:104,881,483...104,917,728
JBrowse link
G Rad21 RAD21 cohesin complex component involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:83,287,867...83,314,810
Ensembl chr 7:83,287,870...83,314,817
JBrowse link
G Rad21l1 RAD21 cohesin complex component like 1 involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
MGI:1349669|MGI:1929645 (MGI:5428050|PMID:22711701), (MGI:5567006|PMID:24589552)
RGD PMID:22711701 PMID:24589552 PMID:21873635 MGI:5428050 MGI:5567006, RGD:13792537 NCBI chr 3:140,160,128...140,188,324
Ensembl chr 3:140,160,118...140,188,298
JBrowse link
G Rec8 REC8 meiotic recombination protein involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
MGI:1349669|MGI:3652039 (MGI:5428050|PMID:22711701), (MGI:5567006|PMID:24589552)
RGD PMID:22711701 PMID:24589552 PMID:21873635 MGI:5428050 MGI:5567006, RGD:13792537 NCBI chr15:29,109,862...29,117,327
Ensembl chr15:29,109,863...29,117,326
JBrowse link
G Spo11 SPO11, initiator of meiotic double stranded breaks acts_upstream_of_or_within ISO MGI:1929645|MGI:2178805|MGI:3652039 (MGI:5567006|PMID:24589552), (MGI:5805564|PMID:27760146) RGD PMID:24589552 PMID:27760146 MGI:5567006 MGI:5805564 NCBI chr 3:161,755,299...161,770,930
Ensembl chr 3:161,757,519...161,770,925
JBrowse link
G Syce1 synaptonemal complex central element protein 1 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 1:195,852,171...195,863,174
Ensembl chr 1:195,852,172...195,863,174
JBrowse link
G Syce1l synaptonemal complex central element protein 1-like involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr19:41,625,074...41,635,541
Ensembl chr19:41,617,180...41,635,526
JBrowse link
G Syce2 synaptonemal complex central element protein 2 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr19:23,266,236...23,291,265 JBrowse link
G Syce3 synaptonemal complex central element protein 3 involved_in IBA
ISO
PMID:21873635
(MGI:5008660|PMID:21637789)
RGD PMID:21637789 PMID:21873635 MGI:5008660, RGD:13792537 NCBI chr 7:120,456,800...120,482,882
Ensembl chr 7:120,456,800...120,482,973
JBrowse link
G Sycp1 synaptonemal complex protein 1 involved_in
acts_upstream_of_or_within
ISS
ISO
GO_REF:0000024
(MGI:3579731|PMID:15937223), (MGI:3581466|PMID:15944401)
MGI:105931|MGI:109542|MGI:3580000 (MGI:5315075|PMID:22164254)
UniProt
RGD
PMID:15937223 PMID:15944401 PMID:22164254 GO_REF:0000024 MGI:3579731 MGI:3581466 MGI:5315075 NCBI chr 2:190,296,688...190,456,687
Ensembl chr 2:190,296,954...190,456,737
JBrowse link
G Sycp3 synaptonemal complex protein 3 involved_in
acts_upstream_of_or_within
ISO (MGI:1352918|PMID:10678170)
MGI:1913904 (MGI:5315075|PMID:22164254)
RGD PMID:10678170 PMID:22164254 MGI:1352918 MGI:5315075 NCBI chr 7:22,874,055...22,888,512
Ensembl chr 7:22,874,055...22,888,511
JBrowse link
G Syde1 synapse defective Rho GTPase homolog 1 acts_upstream_of_or_within ISO (MGI:5515279|PMID:23791195) RGD PMID:23791195 MGI:5515279 NCBI chr 7:11,032,931...11,038,917
Ensembl chr 7:11,032,898...11,039,869
JBrowse link
G Tex11 testis expressed 11 involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
MGI:3526163 (MGI:3774244|PMID:18316482)
RGD PMID:18316482 PMID:21873635 MGI:3774244, RGD:13792537 NCBI chr  X:65,932,904...66,196,525
Ensembl chr  X:65,932,988...66,196,187
JBrowse link
G Tex12 testis expressed 12 involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
MGI:109542|MGI:3811722 (MGI:5315075|PMID:22164254)
RGD PMID:22164254 PMID:21873635 MGI:5315075, RGD:13792537 NCBI chr 8:50,908,161...50,913,205
Ensembl chr 8:50,909,052...50,913,217
JBrowse link
G Tex15 testis expressed 15, meiosis and synapsis associated acts_upstream_of_or_within ISO MGI:3526165 (MGI:3794139|PMID:18283110) RGD PMID:18283110 MGI:3794139 NCBI chr16:58,598,991...58,659,005
Ensembl chr16:58,598,989...58,658,467
JBrowse link
G Trip13 thyroid hormone receptor interactor 13 involved_in ISS
ISO
GO_REF:0000024
(MGI:4821667|PMID:20711356)
UniProt
RGD
PMID:20711356 GO_REF:0000024 MGI:4821667 NCBI chr 1:29,357,093...29,402,078
Ensembl chr 1:29,357,130...29,402,074
JBrowse link
synaptonemal complex disassembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hspa2 heat shock protein family A (Hsp70) member 2 acts_upstream_of_or_within ISO MGI:2447605 (MGI:1101281|PMID:9409676) RGD PMID:9409676 MGI:1101281 NCBI chr 6:95,128,504...95,131,281
Ensembl chr 6:95,128,350...95,131,287
JBrowse link
G Plk1 polo-like kinase 1 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
(MGI:5504589|PMID:22854038)
Ensembl
RGD
PMID:22854038 GO_REF:0000107 MGI:5504589 NCBI chr 1:176,716,420...176,726,400
Ensembl chr 1:176,716,420...176,726,400
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19492
    cellular process 18340
      cellular component organization or biogenesis 6481
        cellular component organization 6235
          organelle organization 3752
            chromosome organization 849
              synaptonemal complex organization 27
                synaptonemal complex assembly + 24
                synaptonemal complex disassembly 2
paths to the root