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ONTOLOGY REPORT - ANNOTATIONS

Term:RNA polymerase binding
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Accession:GO:0070063 term browser browse the term
Definition:Binding to an RNA polymerase molecule or complex.


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RNA polymerase binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Anp32b acidic nuclear phosphoprotein 32 family member B enables ISO
IEA		 (PMID:9285060)
GO_REF:0000107		 RGD
Ensembl		 PMID:9285060 GO_REF:0000107 NCBI chr 5:60,743,077...60,765,726
Ensembl chr 5:60,743,443...60,765,717 		JBrowse link
G Bin1 bridging integrator 1 enables ISO
IEA		 UniProtKB:P27958-PRO_0000037576|UniProtKB:Q9WMX2-PRO_0000037551 (PMID:16530520)
GO_REF:0000107		 RGD
Ensembl		 PMID:16530520 GO_REF:0000107 NCBI chr18:24,009,731...24,067,267
Ensembl chr18:24,009,653...24,067,263 		JBrowse link
G Brca1 BRCA1, DNA repair associated enables ISS
ISO
IEA		 GO_REF:0000024
(PMID:9662397)
GO_REF:0000107		 UniProt
RGD
Ensembl		 PMID:9662397 GO_REF:0000024 GO_REF:0000107 NCBI chr10:86,417,441...86,477,762
Ensembl chr10:86,418,000...86,477,304 		JBrowse link
G Ccnt1 cyclin T1 enables ISO UniProtKB:P24928 (PMID:15563843) RGD PMID:15563843 NCBI chr 7:129,687,146...129,718,080
Ensembl chr 7:129,691,209...129,717,871 		JBrowse link
G Ccnt2 cyclin T2 enables ISO UniProtKB:P24928 (PMID:15563843) RGD PMID:15563843 NCBI chr13:39,251,573...39,293,172
Ensembl chr13:39,251,573...39,292,019 		JBrowse link
G Dhx9 DExH-box helicase 9 enables ISO (PMID:9323138) RGD PMID:9323138 NCBI chr13:65,602,322...65,639,098
Ensembl chr13:65,602,323...65,639,069 		JBrowse link
G Ercc6 ERCC excision repair 6, chromatin remodeling factor enables ISO (PMID:26218421) RGD PMID:26218421 NCBI chr16:7,764,983...7,835,587
Ensembl chr16:7,765,013...7,835,587 		JBrowse link
G Gsg1 germ cell associated 1 enables ISO PR:Q9WVP6 (PMID:18325338) RGD PMID:18325338 NCBI chr 4:168,090,773...168,107,039
Ensembl chr 4:168,090,776...168,107,039 		JBrowse link
G Nedd4 NEDD4 E3 ubiquitin protein ligase enables ISO
IEA		 UniProtKB:P24928 (PMID:17996703)
GO_REF:0000107		 RGD
Ensembl		 PMID:17996703 GO_REF:0000107 NCBI chr 8:73,384,095...73,468,951
Ensembl chr 8:73,383,695...73,468,951 		JBrowse link
G Pabpn1 poly(A) binding protein, nuclear 1 enables ISO (MGI:5795816|PMID:22844456) RGD PMID:22844456 MGI:5795816 NCBI chr15:28,368,100...28,372,712
Ensembl chr15:28,368,100...28,372,703 		JBrowse link
G Per2 period circadian regulator 2 enables ISO UniProtKB:P08775 (MGI:5430667|PMID:22767893) RGD PMID:22767893 MGI:5430667 NCBI chr 9:92,007,289...92,049,551
Ensembl chr 9:92,007,296...92,049,459 		JBrowse link
G Phrf1 PHD and ring finger domains 1 enables IPI PMID:8692929 UniProt PMID:8692929 RGD:1299392 NCBI chr 1:196,333,663...196,366,901
Ensembl chr 1:196,333,903...196,366,892 		JBrowse link
G Pkn2 protein kinase N2 enables ISO
IEA		 UniProtKB:O92972-PRO_0000278753 (PMID:15364941)
GO_REF:0000107		 RGD
Ensembl		 PMID:15364941 GO_REF:0000107 NCBI chr 2:231,793,584...231,898,953
Ensembl chr 2:231,793,584...231,898,953 		JBrowse link
G Ppib peptidylprolyl isomerase B enables ISO UniProtKB:Q9WMX2-PRO_0000037552 (PMID:15989969) RGD PMID:15989969 NCBI chr 8:66,603,877...66,609,734
Ensembl chr 8:66,603,861...66,630,428 		JBrowse link
G Rrn3 RRN3 homolog, RNA polymerase I transcription factor enables ISO (PMID:8413268) RGD PMID:8413268 NCBI chr10:2,129,949...2,165,381
Ensembl chr10:2,129,978...2,165,663 		JBrowse link
G Scaf8 SR-related CTD-associated factor 8 enables IPI PMID:9528809 UniProt PMID:9528809 RGD:8554489 NCBI chr 1:43,727,686...43,855,889
Ensembl chr 1:43,727,794...43,804,977 		JBrowse link
G Stom stomatin enables ISO UniProtKB:Q9WMX2-PRO_0000037552 (PMID:25262680) RGD PMID:25262680 NCBI chr 3:18,645,058...18,667,343
Ensembl chr 3:18,644,378...18,667,354 		JBrowse link
G Taf10 TATA-box binding protein associated factor 10 enables ISO (PMID:15099517) RGD PMID:15099517 NCBI chr 1:160,095,108...160,096,401
Ensembl chr 1:160,095,108...160,096,376 		JBrowse link
G Tcerg1 transcription elongation regulator 1 enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr18:34,505,708...34,566,470
Ensembl chr18:34,505,751...34,566,470 		JBrowse link
G Tcerg1l transcription elongation regulator 1-like enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:193,012,937...193,201,860
Ensembl chr 1:193,012,937...193,200,913 		JBrowse link
G Wdhd1 WD repeat and HMG-box DNA binding protein 1 enables ISO (PMID:21266480) RGD PMID:21266480 NCBI chr15:20,478,310...20,523,106
Ensembl chr15:20,489,291...20,523,096 		JBrowse link
G Ythdc2 YTH N6-methyladenosine RNA binding protein C2 enables ISO UniProtKB:P27958-PRO_0000037577 (PMID:21559518) RGD PMID:21559518 NCBI chr18:37,266,559...37,331,681
Ensembl chr18:37,265,836...37,331,023 		JBrowse link
G Zfp36 zinc finger protein 36 enables IEA
ISO
ISS		 GO_REF:0000107
(MGI:5795816|PMID:22844456)
GO_REF:0000024		 Ensembl
RGD
UniProt		 PMID:22844456 GO_REF:0000024 GO_REF:0000107 MGI:5795816 NCBI chr 1:83,669,084...83,671,564
Ensembl chr 1:83,669,084...83,671,564 		JBrowse link
RNA polymerase core enzyme binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rpap2 RNA polymerase II associated protein 2 enables IEA GO_REF:0000002
GO_REF:0000104		 InterPro
UniProt		 GO_REF:0000002 GO_REF:0000104 NCBI chr14:2,109,044...2,187,343
Ensembl chr14:2,109,053...2,187,350 		JBrowse link
G Scaf8 SR-related CTD-associated factor 8 enables ISO UniProtKB:P24928 (PMID:18550522) RGD PMID:18550522 NCBI chr 1:43,727,686...43,855,889
Ensembl chr 1:43,727,794...43,804,977 		JBrowse link
RNA polymerase I core binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Erbb2 erb-b2 receptor tyrosine kinase 2 enables ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:21555369)		 UniProt
Ensembl
RGD		 PMID:21555369 GO_REF:0000024 GO_REF:0000107 NCBI chr10:83,411,197...83,435,078
Ensembl chr10:83,411,313...83,435,078 		JBrowse link
G Rrn3 RRN3 homolog, RNA polymerase I transcription factor enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:2,129,949...2,165,381
Ensembl chr10:2,129,978...2,165,663 		JBrowse link
RNA polymerase II C-terminal domain binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Brd4 bromodomain containing 4 enables ISO (PMID:22509028)
PR:P08775 (PMID:22509028)		 RGD PMID:22509028 NCBI chr 7:11,216,446...11,296,029
Ensembl chr 7:11,216,446...11,295,539 		JBrowse link
G Hnrnpu heterogeneous nuclear ribonucleoprotein U enables ISS
ISO
IEA		 GO_REF:0000024
(MGI:5908336|PMID:21235343)
GO_REF:0000118		 UniProt
RGD
TreeGrafter		 PMID:21235343 GO_REF:0000024 GO_REF:0000118 MGI:5908336 NCBI chr13:90,069,058...90,086,905
Ensembl chr13:90,074,181...90,086,588 		JBrowse link
G Pcif1 phosphorylated CTD interacting factor 1 enables ISO (PMID:18294453), (PMID:30467178) RGD PMID:18294453 PMID:30467178 NCBI chr 3:153,614,147...153,627,079
Ensembl chr 3:153,614,147...153,627,079 		JBrowse link
G Rprd1a regulation of nuclear pre-mRNA domain containing 1A enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr18:15,791,418...15,839,338
Ensembl chr18:15,791,418...15,839,338 		JBrowse link
G Rprd1b regulation of nuclear pre-mRNA domain containing 1B enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 3:146,682,975...146,729,251
Ensembl chr 3:146,682,922...146,786,452 		JBrowse link
G Rprd2 regulation of nuclear pre-mRNA domain containing 2 enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 2:183,311,132...183,367,959
Ensembl chr 2:183,293,114...183,367,407 		JBrowse link
G Scaf1 SR-related CTD-associated factor 1 enables ISO
IBA		 UniProtKB:P24928 (PMID:15992770)
GO_REF:0000033		 RGD
GO_Central		 PMID:15992770 GO_REF:0000033 NCBI chr 1:95,485,448...95,499,389
Ensembl chr 1:95,485,448...95,496,029 		JBrowse link
RNA polymerase II C-terminal domain phosphoserine binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Leo1 LEO1 homolog, Paf1/RNA polymerase II complex component enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 8:76,199,547...76,223,983
Ensembl chr 8:76,199,099...76,223,983 		JBrowse link
G Pcif1 phosphorylated CTD interacting factor 1 enables ISO (PMID:32814042) RGD PMID:32814042 NCBI chr 3:153,614,147...153,627,079
Ensembl chr 3:153,614,147...153,627,079 		JBrowse link
G Rtf1 Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae) enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 3:106,659,363...106,718,956
Ensembl chr 3:106,659,308...106,718,970 		JBrowse link
G Scaf4 SR-related CTD-associated factor 4 enables ISO
ISS
IEA
IBA		 (PMID:31104839)
GO_REF:0000024
GO_REF:0000107
GO_REF:0000118
GO_REF:0000033		 RGD
UniProt
Ensembl
TreeGrafter
GO_Central		 PMID:31104839 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 NCBI chr11:29,460,479...29,521,153
Ensembl chr11:29,465,106...29,521,153 		JBrowse link
G Scaf8 SR-related CTD-associated factor 8 enables ISO
ISS
IEA		 (PMID:31104839)
GO_REF:0000024
GO_REF:0000107		 RGD
UniProt
Ensembl		 PMID:31104839 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:43,727,686...43,855,889
Ensembl chr 1:43,727,794...43,804,977 		JBrowse link
RNA polymerase II complex binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ago1 argonaute RISC component 1 enables ISO (PMID:25336585) RGD PMID:25336585 NCBI chr 5:138,722,111...138,757,118
Ensembl chr 5:138,722,111...138,773,546 		JBrowse link
G Ago2 argonaute RISC catalytic component 2 enables IEA
ISO		 GO_REF:0000107
(PMID:25336585)		 Ensembl
RGD		 PMID:25336585 GO_REF:0000107 NCBI chr 7:105,018,202...105,105,118
Ensembl chr 7:105,029,120...105,104,974 		JBrowse link
G Ccar2 cell cycle and apoptosis regulator 2 enables ISO (PMID:22446626) RGD PMID:22446626 NCBI chr15:45,212,797...45,228,001
Ensembl chr15:45,212,803...45,227,636 		JBrowse link
G Cdc73 cell division cycle 73 enables ISS
IBA
IEA
ISO		 GO_REF:0000024
GO_REF:0000033
GO_REF:0000107
(PMID:15923622)		 UniProt
GO_Central
Ensembl
RGD		 PMID:15923622 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr13:55,357,226...55,449,690
Ensembl chr13:55,357,226...55,449,656 		JBrowse link
G Ctr9 CTR9 homolog, Paf1/RNA polymerase II complex component enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:165,137,277...165,167,303
Ensembl chr 1:165,137,215...165,167,303 		JBrowse link
G Dhx9 DExH-box helicase 9 enables ISO (PMID:11416126) RGD PMID:11416126 NCBI chr13:65,602,322...65,639,098
Ensembl chr13:65,602,323...65,639,069 		JBrowse link
G Elof1 elongation factor 1 enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 8:20,645,336...20,650,888
Ensembl chr 8:20,645,336...20,650,579 		JBrowse link
G Elp2 elongator acetyltransferase complex subunit 2 contributes_to ISO (PMID:11714725) RGD PMID:11714725 NCBI chr18:15,885,940...15,921,564
Ensembl chr18:15,885,934...15,921,599 		JBrowse link
G Elp4 elongator acetyltransferase complex subunit 4 contributes_to ISO (PMID:11714725) RGD PMID:11714725 NCBI chr 3:92,162,271...92,385,251
Ensembl chr 3:92,162,280...92,385,243 		JBrowse link
G ENSRNOG00000068353 enables IEA GO_REF:0000118 TreeGrafter GO_REF:0000118 Ensembl chr 1:258,030,937...258,037,823 JBrowse link
G ENSRNOG00000069559 enables IEA GO_REF:0000118 TreeGrafter GO_REF:0000118 Ensembl chr 4:64,095,041...64,095,714 JBrowse link
G Ercc5 ERCC excision repair 5, endonuclease enables ISO (PMID:16246722) RGD PMID:16246722 NCBI chr 9:46,309,477...46,354,478
Ensembl chr 9:46,309,389...46,354,472 		JBrowse link
G Esrrb estrogen-related receptor beta enables ISS
ISO		 GO_REF:0000024
(MGI:5440110|PMID:23019124)		 UniProt
RGD		 PMID:23019124 GO_REF:0000024 MGI:5440110 NCBI chr 6:106,007,701...106,163,136
Ensembl chr 6:106,008,095...106,160,791 		JBrowse link
G Gtf2b general transcription factor IIB enables ISO
IEA
ISS		 (PMID:8413225), (PMID:8504927)
GO_REF:0000107
GO_REF:0000024		 RGD
Ensembl
UniProt		 PMID:8413225 PMID:8504927 GO_REF:0000024 GO_REF:0000107 NCBI chr 2:231,767,317...231,785,626
Ensembl chr 2:231,767,238...231,785,651 		JBrowse link
G Hnrnpu heterogeneous nuclear ribonucleoprotein U enables ISO
IEA		 (PMID:10490622)
GO_REF:0000107		 RGD
Ensembl		 PMID:10490622 GO_REF:0000107 NCBI chr13:90,069,058...90,086,905
Ensembl chr13:90,074,181...90,086,588 		JBrowse link
G Ncoa3 nuclear receptor coactivator 3 enables ISS
ISO		 GO_REF:0000024
(MGI:5440110|PMID:23019124)		 UniProt
RGD		 PMID:23019124 GO_REF:0000024 MGI:5440110 NCBI chr 3:154,738,566...154,821,395
Ensembl chr 3:154,738,581...154,818,594 		JBrowse link
G Paf1 PAF1 homolog, Paf1/RNA polymerase II complex component enables ISO
IBA
ISS		 (PMID:15923622)
GO_REF:0000033
GO_REF:0000024		 RGD
GO_Central
UniProt		 PMID:15923622 GO_REF:0000024 GO_REF:0000033 NCBI chr 1:83,683,654...83,689,233
Ensembl chr 1:83,668,813...83,689,237 		JBrowse link
G Pcf11 PCF11 cleavage and polyadenylation factor subunit enables ISO
IBA		 (PMID:29196535)
GO_REF:0000033		 RGD
GO_Central		 PMID:29196535 GO_REF:0000033 NCBI chr 1:146,694,045...146,724,030
Ensembl chr 1:146,697,646...146,724,124 		JBrowse link
G Polr2m RNA polymerase II subunit M enables ISO (PMID:26789250) RGD PMID:26789250 NCBI chr 8:72,131,992...72,139,423
Ensembl chr 8:72,131,530...72,243,036 		JBrowse link
G Recql5 RecQ like helicase 5 enables ISS
ISO		 GO_REF:0000024
(PMID:23748380)		 UniProt
RGD		 PMID:23748380 GO_REF:0000024 NCBI chr10:101,126,544...101,165,739
Ensembl chr10:101,126,547...101,165,652 		JBrowse link
G Rprd1a regulation of nuclear pre-mRNA domain containing 1A enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr18:15,791,418...15,839,338
Ensembl chr18:15,791,418...15,839,338 		JBrowse link
G Rprd1b regulation of nuclear pre-mRNA domain containing 1B enables ISO
IBA		 (PMID:22264791)
GO_REF:0000033		 RGD
GO_Central		 PMID:22264791 GO_REF:0000033 NCBI chr 3:146,682,975...146,729,251
Ensembl chr 3:146,682,922...146,786,452 		JBrowse link
G Rprd2 regulation of nuclear pre-mRNA domain containing 2 enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 2:183,311,132...183,367,959
Ensembl chr 2:183,293,114...183,367,407 		JBrowse link
G Rtraf RNA transcription, translation and transport factor enables ISO (PMID:16950395) RGD PMID:16950395 NCBI chr15:4,447,243...4,457,973
Ensembl chr15:4,442,573...4,457,972 		JBrowse link
G Scaf8 SR-related CTD-associated factor 8 enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:43,727,686...43,855,889
Ensembl chr 1:43,727,794...43,804,977 		JBrowse link
G Smyd2 SET and MYND domain containing 2 enables ISS
ISO		 GO_REF:0000024
(MGI:4440782|PMID:20305823)		 UniProt
RGD		 PMID:20305823 GO_REF:0000024 MGI:4440782 NCBI chr13:101,425,270...101,466,576
Ensembl chr13:101,425,273...101,466,576 		JBrowse link
G Smyd3 SET and MYND domain containing 3 enables ISO (PMID:23752591) RGD PMID:23752591 NCBI chr13:90,709,263...91,266,209
Ensembl chr13:90,709,270...91,266,253 		JBrowse link
G Supt4h1 SPT4 homolog, DSIF elongation factor subunit enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:72,539,323...72,545,582
Ensembl chr10:72,539,382...72,545,831 		JBrowse link
G Uri1 URI1, prefoldin-like chaperone enables ISO (PMID:9819440) RGD PMID:9819440 NCBI chr 1:90,646,392...90,704,811
Ensembl chr 1:90,646,393...90,709,026 		JBrowse link
G Uvssa UV-stimulated scaffold protein A enables ISO
IBA
IEA
ISS		 (PMID:22466610), (PMID:22466611), (PMID:22466612)
GO_REF:0000033
GO_REF:0000107
GO_REF:0000024		 RGD
GO_Central
Ensembl
UniProt		 PMID:22466610 PMID:22466611 PMID:22466612 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr14:77,309,188...77,351,922
Ensembl chr14:77,314,056...77,351,903 		JBrowse link
G Wac WW domain containing adaptor with coiled-coil enables ISO
IBA		 (PMID:21329877)
GO_REF:0000033		 RGD
GO_Central		 PMID:21329877 GO_REF:0000033 NCBI chr17:55,922,686...55,984,286
Ensembl chr17:55,923,123...55,982,301 		JBrowse link
G Wdr43 WD repeat domain 43 enables ISO (MGI:6323527|PMID:31128943) RGD PMID:31128943 MGI:6323527 NCBI chr 6:23,845,499...23,884,846
Ensembl chr 6:23,845,499...23,884,846 		JBrowse link
G Zfp326 zinc finger protein 326 enables ISO (PMID:22446626) RGD PMID:22446626 NCBI chr14:3,941,210...3,980,419
Ensembl chr14:3,941,958...3,980,384 		JBrowse link
RNA polymerase III core binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Maf1 MAF1 homolog, negative regulator of RNA polymerase III enables IBA
IEA		 GO_REF:0000033
GO_REF:0000118		 GO_Central
TreeGrafter		 GO_REF:0000033 GO_REF:0000118 NCBI chr 7:108,075,173...108,078,252
Ensembl chr 7:108,075,189...108,078,249 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  molecular_function 21010
    binding 18037
      protein binding 14764
        enzyme binding 2367
          RNA polymerase binding 63
            RNA polymerase core enzyme binding + 43
            single-subunit type RNA polymerase binding + 0
paths to the root