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ONTOLOGY REPORT - ANNOTATIONS

Term:protein-DNA complex assembly
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Accession:GO:0065004 term browser browse the term
Definition:The aggregation, arrangement and bonding together of proteins and DNA molecules to form a protein-DNA complex.


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protein-DNA complex assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ep300 E1A binding protein p300 IDA p53, CBP, p21/WAF1 promoter RGD PMID:9215639 RGD:2312285 NCBI chr 7:113,108,476...113,178,529
Ensembl chr 7:113,106,247...113,136,088
Ensembl chr 7:113,106,247...113,136,088 		JBrowse link
G Hey2 hes-related family bHLH transcription factor with YRPW motif 2 acts_upstream_of_or_within ISO (MGI:1354027|PMID:10692439), (MGI:3624193|PMID:16603706) RGD PMID:10692439 PMID:16603706 MGI:1354027 MGI:3624193 NCBI chr 1:26,822,131...26,832,218
Ensembl chr 1:26,822,131...26,832,218 		JBrowse link
G Hnf1b HNF1 homeobox B IMP RGD PMID:9545279 RGD:2312721 NCBI chr10:68,735,894...68,789,888
Ensembl chr10:68,735,894...68,789,888 		JBrowse link
G Pias1 protein inhibitor of activated STAT, 1 IMP RGD PMID:16135793 RGD:2303115 NCBI chr 8:63,338,150...63,451,670
Ensembl chr 8:63,338,150...63,438,905 		JBrowse link
G Tcf4 transcription factor 4 involved_in ISO (MGI:85411|PMID:8978694) RGD PMID:8978694 MGI:85411 NCBI chr18:62,941,739...63,288,126
Ensembl chr18:62,943,782...63,284,425 		JBrowse link
CENP-A containing chromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cenpa centromere protein A involved_in ISO (PMID:11682612) RGD PMID:11682612 NCBI chr 6:25,700,142...25,711,767
Ensembl chr 6:25,700,142...25,711,675 		JBrowse link
G Cenpi centromere protein I involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:97,515,919...97,567,671
Ensembl chr  X:97,515,972...97,567,657 		JBrowse link
G Cenpn centromere protein N involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr19:44,971,265...44,994,019
Ensembl chr19:44,968,308...44,994,012 		JBrowse link
G Cenpp centromere protein P involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr17:15,013,869...15,189,312
Ensembl chr17:15,014,058...15,189,304 		JBrowse link
G Hjurp Holliday junction recognition protein involved_in ISO
IBA		 (PMID:19410544), (PMID:19410545)
PMID:21873635		 RGD PMID:19410544 PMID:19410545 PMID:21873635 RGD:13792537 NCBI chr 9:88,853,379...88,867,730
Ensembl chr 9:88,853,386...88,867,728 		JBrowse link
G Itgb3bp integrin subunit beta 3 binding protein involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 5:114,460,217...114,525,538
Ensembl chr 5:114,460,221...114,525,704 		JBrowse link
G Mis18a MIS18 kinetochore protein A acts_upstream_of_or_within
involved_in		 ISO
IBA		 MGI:5441069 (MGI:5438906|PMID:22516971)
PMID:21873635		 RGD PMID:22516971 PMID:21873635 MGI:5438906, RGD:13792537 NCBI chr11:29,968,030...29,981,058
Ensembl chr11:29,967,701...29,981,062 		JBrowse link
G Nasp nuclear autoantigenic sperm protein involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:130,057,363...130,083,003
Ensembl chr 5:130,057,363...130,082,928 		JBrowse link
G Oip5 Opa interacting protein 5 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:106,593,746...106,603,281
Ensembl chr 3:106,593,760...106,603,250 		JBrowse link
centromere complex assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cenpi centromere protein I involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr  X:97,515,919...97,567,671
Ensembl chr  X:97,515,972...97,567,657 		JBrowse link
G Cenpo centromere protein O involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 6:27,203,642...27,218,394
Ensembl chr 6:27,188,537...27,218,314 		JBrowse link
G Cenpv centromere protein V involved_in ISO (PMID:18772885) RGD PMID:18772885 NCBI chr10:47,214,479...47,228,552
Ensembl chr10:47,214,490...47,228,761 		JBrowse link
DNA recombinase assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dmc1 DNA meiotic recombinase 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:111,124,888...111,167,465
Ensembl chr 7:111,124,888...111,167,952 		JBrowse link
G Rad51 RAD51 recombinase involved_in ISO
IBA		 (PMID:26681308)
PMID:21873635		 RGD PMID:26681308 PMID:21873635 RGD:13792537 NCBI chr 3:106,099,753...106,125,038
Ensembl chr 3:106,100,381...106,125,035 		JBrowse link
G Rad52 RAD52 homolog, DNA repair protein involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 4:153,106,062...153,128,598
Ensembl chr 4:153,106,062...153,128,207 		JBrowse link
DNA replication preinitiation complex assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdt1 chromatin licensing and DNA replication factor 1 involved_in IBA
ISO		 PMID:21873635
(PMID:11125146)		 RGD PMID:11125146 PMID:21873635 RGD:13792537 NCBI chr19:50,620,713...50,625,659
Ensembl chr19:50,620,713...50,625,659 		JBrowse link
G Gmnn geminin, DNA replication inhibitor involved_in ISO (PMID:11125146) RGD PMID:11125146 NCBI chr17:40,301,771...40,310,054
Ensembl chr17:40,301,808...40,310,054 		JBrowse link
kinetochore assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cenpa centromere protein A involved_in ISO (PMID:11682612) RGD PMID:11682612 NCBI chr 6:25,700,142...25,711,767
Ensembl chr 6:25,700,142...25,711,675 		JBrowse link
G Cenpc centromere protein C involved_in ISO
IBA		 (PMID:21529714)
PMID:21873635		 RGD PMID:21529714 PMID:21873635 RGD:13792537 NCBI chr14:21,988,067...22,046,732
Ensembl chr14:21,988,144...22,055,476 		JBrowse link
G Cenpe centromere protein E involved_in ISO (PMID:9763420) RGD PMID:9763420 NCBI chr 2:223,637,035...223,695,692
Ensembl chr 2:223,636,998...223,695,669 		JBrowse link
G Cenph centromere protein H involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 2:31,894,253...31,910,182
Ensembl chr 2:31,894,667...31,910,154 		JBrowse link
G Cenpk centromere protein K involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 2:35,360,132...35,421,372
Ensembl chr 2:35,360,132...35,385,706 		JBrowse link
G Cenpt centromere protein T involved_in ISO
IEA
ISS		 (PMID:21529714)
GO_REF:0000002
GO_REF:0000024		 RGD
InterPro
UniProt		 PMID:21529714 GO_REF:0000002 GO_REF:0000024 NCBI chr19:33,734,684...33,741,159
Ensembl chr19:33,734,685...33,741,142 		JBrowse link
G Cenpw centromere protein W involved_in ISS
IBA
ISO		 GO_REF:0000024
PMID:21873635
(PMID:21695110)		 UniProt
RGD		 PMID:21695110 PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr 1:27,525,324...27,530,464
Ensembl chr 1:27,525,324...27,530,464 		JBrowse link
G Dlgap5 DLG associated protein 5 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr15:20,633,964...20,664,569
Ensembl chr15:20,633,966...20,664,518 		JBrowse link
G ENSRNOG00000068966 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 Ensembl chr10:13,018,919...13,019,963 JBrowse link
G LOC681382 hypothetical protein LOC681382 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr  X:53,848,491...53,848,803
Ensembl chr  X:53,848,510...53,848,770 		JBrowse link
G Mis12 MIS12 kinetochore complex component involved_in IBA
ISO		 PMID:21873635
(PMID:16585270)		 RGD PMID:16585270 PMID:21873635 RGD:13792537 NCBI chr10:55,739,590...55,747,915
Ensembl chr10:55,739,564...55,751,068 		JBrowse link
G Pogz pogo transposable element derived with ZNF domain involved_in ISO (PMID:20562864) RGD PMID:20562864 NCBI chr 2:182,394,269...182,440,711
Ensembl chr 2:182,380,768...182,440,707 		JBrowse link
late meiotic recombination nodule assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mcmdc2 minichromosome maintenance domain containing 2 acts_upstream_of_or_within ISO MGI:2178050|MGI:5511194 (MGI:5805564|PMID:27760146) RGD PMID:27760146 MGI:5805564 NCBI chr 5:9,291,967...9,337,526
Ensembl chr 5:9,298,101...9,338,300 		JBrowse link
meiotic DNA recombinase assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rad51c RAD51 paralog C involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:72,205,032...72,231,643
Ensembl chr10:72,205,032...72,231,248 		JBrowse link
meiotic recombination nodule assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mcmdc2 minichromosome maintenance domain containing 2 acts_upstream_of_or_within ISO MGI:2178050|MGI:5511194 (MGI:5805564|PMID:27760146) RGD PMID:27760146 MGI:5805564 NCBI chr 5:9,291,967...9,337,526
Ensembl chr 5:9,298,101...9,338,300 		JBrowse link
mitotic DNA replication preinitiation complex assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdc45 cell division cycle 45 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr11:82,185,427...82,210,630
Ensembl chr11:82,185,473...82,210,619 		JBrowse link
negative regulation of RNA polymerase II transcription preinitiation complex assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hmgb1 high mobility group box 1 involved_in ISO (PMID:8006019) RGD PMID:8006019 NCBI chr12:5,973,062...5,978,565
Ensembl chr12:5,901,586...5,978,565 		JBrowse link
G Thra thyroid hormone receptor alpha involved_in ISO
IEA		 (PMID:8524305)
GO_REF:0000107		 RGD
Ensembl		 PMID:8524305 GO_REF:0000107 NCBI chr10:83,701,885...83,729,408
Ensembl chr10:83,700,755...83,729,936 		JBrowse link
negative regulation of shelterin complex assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Zfp827 zinc finger protein 827 involved_in ISO (PMID:25150861) RGD PMID:25150861 NCBI chr19:28,720,568...28,887,381
Ensembl chr19:28,721,021...28,887,191 		JBrowse link
nucleosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Anp32b acidic nuclear phosphoprotein 32 family member B involved_in ISO (PMID:20538007) RGD PMID:20538007 NCBI chr 5:60,743,077...60,765,726
Ensembl chr 5:60,743,443...60,765,717 		JBrowse link
G Asf1a anti-silencing function 1A histone chaperone acts_upstream_of_or_within
involved_in		 ISO (PMID:11897662)
(PMID:14718166)		 RGD PMID:11897662 PMID:14718166 NCBI chr20:32,893,962...32,908,808
Ensembl chr20:32,893,573...32,908,808 		JBrowse link
G Asf1b anti-silencing function 1B histone chaperone acts_upstream_of_or_within
involved_in		 ISO (MGI:2675150|PMID:12842904)
(PMID:14718166)		 RGD PMID:12842904 PMID:14718166 MGI:2675150 NCBI chr19:24,181,024...24,195,604
Ensembl chr19:24,181,028...24,195,549 		JBrowse link
G Atrx ATRX, chromatin remodeler involved_in ISO
ISS		 (PMID:20651253)
GO_REF:0000024		 RGD
UniProt		 PMID:20651253 GO_REF:0000024 NCBI chr  X:70,850,981...70,997,330
Ensembl chr  X:70,850,981...70,997,330 		JBrowse link
G Baz1a bromodomain adjacent to zinc finger domain, 1A involved_in ISO (PMID:14759371) RGD PMID:14759371 NCBI chr 6:72,389,701...72,512,516
Ensembl chr 6:72,389,703...72,512,459 		JBrowse link
G Brd2 bromodomain containing 2 involved_in ISO
ISS		 (PMID:18406326)
GO_REF:0000024		 RGD
UniProt		 PMID:18406326 GO_REF:0000024 NCBI chr20:4,727,078...4,735,389
Ensembl chr20:4,728,151...4,735,388 		JBrowse link
G Cabin1 calcineurin binding protein 1 involved_in ISO
IEA		 (PMID:14718166)
GO_REF:0000107		 RGD
Ensembl		 PMID:14718166 GO_REF:0000107 NCBI chr20:12,893,314...13,015,357
Ensembl chr20:12,893,358...13,015,357 		JBrowse link
G Chaf1a chromatin assembly factor 1 subunit A involved_in ISO
IBA		 (PMID:14718166)
PMID:21873635		 RGD PMID:14718166 PMID:21873635 RGD:13792537 NCBI chr 9:873,953...900,701
Ensembl chr 9:874,051...900,654 		JBrowse link
G Chaf1b chromatin assembly factor 1 subunit B involved_in ISO
IBA		 (PMID:14718166)
PMID:21873635		 RGD PMID:14718166 PMID:21873635 RGD:13792537 NCBI chr11:33,200,894...33,221,076
Ensembl chr11:33,200,981...33,221,070 		JBrowse link
G Chrac1 chromatin accessibility complex subunit 1 involved_in ISO (PMID:14759371) RGD PMID:14759371 NCBI chr 7:105,013,047...105,016,435
Ensembl chr 7:105,013,015...105,017,136 		JBrowse link
G Daxx death-domain associated protein involved_in ISO (PMID:20504901), (PMID:20651253)
(MGI:5567907|PMID:20651253)		 RGD PMID:20504901 PMID:20651253 MGI:5567907 NCBI chr20:4,970,090...4,976,145
Ensembl chr20:4,970,092...4,975,843 		JBrowse link
G Dnajc9 DnaJ heat shock protein family (Hsp40) member C9 involved_in ISO (PMID:33857403) RGD PMID:33857403 NCBI chr15:3,923,842...3,928,118
Ensembl chr15:3,923,268...3,928,118 		JBrowse link
G Grwd1 glutamate-rich WD repeat containing 1 involved_in ISO
ISS
IEA		 (PMID:25990725), (PMID:27552915)
GO_REF:0000024
GO_REF:0000107		 RGD
UniProt
Ensembl		 PMID:25990725 PMID:27552915 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:96,301,260...96,306,962
Ensembl chr 1:96,301,261...96,307,201 		JBrowse link
G H1f0 H1.0 linker histone involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 7:110,592,834...110,594,694
Ensembl chr 7:110,592,208...110,594,694 		JBrowse link
G H1f1 H1.1 linker histone, cluster member involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr17:41,366,268...41,367,011
Ensembl chr17:41,366,268...41,367,011 		JBrowse link
G H1f10 H1.10 linker histone involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 4:120,440,515...120,444,705
Ensembl chr 4:120,440,870...120,441,448 		JBrowse link
G H1f2 H1.2 linker histone, cluster member involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr17:41,391,106...41,392,611
Ensembl chr17:41,388,477...41,392,635 		JBrowse link
G H1f4 H1.4 linker histone, cluster member involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr17:41,486,634...41,487,293
Ensembl chr17:41,486,560...41,487,403 		JBrowse link
G H1f5 H1.5 linker histone, cluster member involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr17:42,726,189...42,726,857
Ensembl chr17:42,726,127...42,769,160 		JBrowse link
G H1f6 H1.6 linker histone, cluster member involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr17:41,427,365...41,428,109
Ensembl chr17:41,427,323...41,428,119 		JBrowse link
G H1f8 H1.8 linker histone involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 4:148,993,133...148,998,254
Ensembl chr 4:148,993,133...148,998,254 		JBrowse link
G H2ab3 H2A.B variant histone 3 involved_in ISO (PMID:22795134) RGD PMID:22795134 NCBI chr  X:82,362,633...82,362,983
Ensembl chr  X:82,362,633...82,362,983 		JBrowse link
G H2bc1 H2B clustered histone 1 involved_in
acts_upstream_of_or_within		 ISS
ISO		 GO_REF:0000024
(MGI:3702345|PMID:17261847)
(MGI:5502464|PMID:23884607)
(PMID:24699735)		 UniProt
RGD		 PMID:17261847 PMID:23884607 PMID:24699735 GO_REF:0000024 MGI:3702345 MGI:5502464 NCBI chr17:41,172,041...41,172,510
Ensembl chr17:41,171,903...41,176,782
Ensembl chr17:41,171,903...41,176,782 		JBrowse link
G H3c1 H3 clustered histone 1 involved_in ISO (PMID:14718166), (PMID:20498094), (PMID:21636898), (PMID:24699735), (PMID:25615412) RGD PMID:14718166 PMID:20498094 PMID:21636898 PMID:24699735 PMID:25615412 NCBI chr17:41,367,824...41,368,902
Ensembl chr17:41,368,386...41,368,856 		JBrowse link
G H3c13 H3 clustered histone 13 involved_in ISO (PMID:21636898), (PMID:25615412) RGD PMID:21636898 PMID:25615412 NCBI chr17:41,529,860...41,532,577
Ensembl chr 2:183,795,504...183,809,469
Ensembl chr17:183,795,504...183,809,469
Ensembl chr 2:183,795,504...183,809,469
Ensembl chr17:183,795,504...183,809,469
Ensembl chr17:183,795,504...183,809,469
Ensembl chr 2:183,795,504...183,809,469 		JBrowse link
G H3c15l-ps1 H3 clustered histone 15 like, pseudogene 1 involved_in ISO (PMID:21636898), (PMID:25615412) RGD PMID:21636898 PMID:25615412 NCBI chr 2:183,797,721...183,800,653 JBrowse link
G H3f3a H3.3 histone A involved_in ISO (PMID:21636898), (PMID:25615412) RGD PMID:21636898 PMID:25615412 NCBI chr13:92,533,294...92,544,903
Ensembl chr13:92,533,298...92,544,908 		JBrowse link
G H3f3b H3.3 histone B involved_in ISO (PMID:21636898), (PMID:25615412) RGD PMID:21636898 PMID:25615412 NCBI chr10:101,256,488...101,258,712
Ensembl chr10:101,256,480...101,258,709 		JBrowse link
G H3f4 H3.4 histone, cluster member involved_in ISO (PMID:20498094), (PMID:25615412) RGD PMID:20498094 PMID:25615412 NCBI chr10:43,740,797...43,741,207 JBrowse link
G H4c3 H4 clustered histone 3 involved_in ISO (PMID:14718166), (PMID:20498094), (PMID:21636898), (PMID:24699735), (PMID:25615412) RGD PMID:14718166 PMID:20498094 PMID:21636898 PMID:24699735 PMID:25615412
G H4cl1 histone H4C like 1 involved_in ISO (PMID:14718166), (PMID:20498094), (PMID:21636898), (PMID:24699735), (PMID:25615412) RGD PMID:14718166 PMID:20498094 PMID:21636898 PMID:24699735 PMID:25615412 NCBI chr17:41,368,743...41,426,735 JBrowse link
G H4cl2 histone H4C like 2 involved_in ISO (PMID:14718166), (PMID:20498094), (PMID:21636898), (PMID:24699735), (PMID:25615412) RGD PMID:14718166 PMID:20498094 PMID:21636898 PMID:24699735 PMID:25615412 NCBI chr17:41,526,192...41,575,488 JBrowse link
G H4f3 H1.3 linker histone, cluster member involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr17:41,528,576...41,554,586
Ensembl chr17:41,529,667...41,552,334 		JBrowse link
G Hat1 histone acetyltransferase 1 involved_in ISO (PMID:14718166) RGD PMID:14718166 NCBI chr 3:56,217,344...56,265,021
Ensembl chr 3:56,217,342...56,275,517 		JBrowse link
G Hils1 histone linker H1 domain, spermatid-specific 1 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr10:79,913,525...79,914,321
Ensembl chr10:79,913,480...79,914,321 		JBrowse link
G Hira histone cell cycle regulator involved_in ISO (PMID:14718166) RGD PMID:14718166 NCBI chr11:82,024,469...82,133,212
Ensembl chr11:82,024,469...82,133,529 		JBrowse link
G Hist1h2ail1 histone cluster 1 H2a family member I like 1 involved_in ISO (PMID:14718166), (PMID:20498094), (PMID:21636898), (PMID:24699735), (PMID:25615412) RGD PMID:14718166 PMID:20498094 PMID:21636898 PMID:24699735 PMID:25615412 NCBI chr17:41,568,666...41,569,076
Ensembl chr17:41,568,471...41,569,109 		JBrowse link
G Hist1h2ao histone cluster 1, H2ao involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:42,704,740...42,705,130
Ensembl chr17:42,698,025...42,698,958 		JBrowse link
G Hist1h3b histone cluster 1, H3b involved_in ISO (PMID:14718166), (PMID:20498094), (PMID:21636898), (PMID:24699735), (PMID:25615412) RGD PMID:14718166 PMID:20498094 PMID:21636898 PMID:24699735 PMID:25615412 NCBI chr17:42,722,805...42,723,925
Ensembl chr17:42,723,450...42,723,911 		JBrowse link
G Hist1h4b histone cluster 1 H4 family member B involved_in IBA
ISO		 PMID:21873635
(PMID:14718166), (PMID:20498094), (PMID:21636898), (PMID:24699735), (PMID:25615412)		 RGD PMID:14718166 PMID:20498094 PMID:21636898 PMID:24699735 PMID:25615412 More... RGD:13792537 NCBI chr17:42,480,467...42,484,912
Ensembl chr17:42,480,313...42,485,370 		JBrowse link
G Hist1h4m histone cluster 1, H4m involved_in IBA
ISO		 PMID:21873635
(PMID:14718166), (PMID:20498094), (PMID:21636898), (PMID:24699735), (PMID:25615412)		 RGD PMID:14718166 PMID:20498094 PMID:21636898 PMID:24699735 PMID:25615412 More... RGD:13792537 NCBI chr17:42,698,054...42,698,365
Ensembl chr17:42,698,025...42,698,958 		JBrowse link
G Hist2h3c2 histone cluster 2 H3 family member C2 involved_in ISO (PMID:21636898), (PMID:25615412) RGD PMID:21636898 PMID:25615412 NCBI chr 2:183,837,311...183,837,721
Ensembl chr 2:183,837,303...183,837,752 		JBrowse link
G Hist2h4 histone cluster 2, H4 involved_in IBA
ISO		 PMID:21873635
(PMID:14718166), (PMID:20498094), (PMID:21636898), (PMID:24699735), (PMID:25615412)		 RGD PMID:14718166 PMID:20498094 PMID:21636898 PMID:24699735 PMID:25615412 More... RGD:13792537 NCBI chr 2:183,831,601...183,831,996
Ensembl chr 2:183,825,994...183,832,048 		JBrowse link
G Hist2h4a histone cluster 2 H4 family member A involved_in ISO (PMID:14718166), (PMID:20498094), (PMID:21636898), (PMID:24699735), (PMID:25615412) RGD PMID:14718166 PMID:20498094 PMID:21636898 PMID:24699735 PMID:25615412
G Hmgb1 high mobility group box 1 involved_in ISO (PMID:2465778) RGD PMID:2465778 NCBI chr12:5,973,062...5,978,565
Ensembl chr12:5,901,586...5,978,565 		JBrowse link
G Hmgb2 high mobility group box 2 involved_in ISO (PMID:2465778) RGD PMID:2465778 NCBI chr16:32,710,651...32,713,230
Ensembl chr16:32,710,658...32,713,140 		JBrowse link
G Hp1bp3 heterochromatin protein 1, binding protein 3 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 5:150,435,781...150,463,004
Ensembl chr 5:150,433,740...150,463,000 		JBrowse link
G Kat6a lysine acetyltransferase 6A involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr16:69,084,914...69,165,923
Ensembl chr16:69,084,914...69,163,606 		JBrowse link
G Kat6b lysine acetyltransferase 6B involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr15:2,638,885...2,811,977
Ensembl chr15:2,639,200...2,812,316 		JBrowse link
G LOC100912290 histone H4-like involved_in ISO (PMID:14718166), (PMID:20498094), (PMID:21636898), (PMID:24699735), (PMID:25615412) RGD PMID:14718166 PMID:20498094 PMID:21636898 PMID:24699735 PMID:25615412
G LOC317165 similar to Set alpha isoform involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr18:39,589,341...39,596,429
Ensembl chr18:39,589,341...39,596,429 		JBrowse link
G LOC684819 similar to H3 histone, family 2 isoform 2 involved_in ISO (PMID:14718166), (PMID:20498094), (PMID:21636898), (PMID:24699735), (PMID:25615412) RGD PMID:14718166 PMID:20498094 PMID:21636898 PMID:24699735 PMID:25615412
G LOC684841 similar to CG31613-PA involved_in ISO (PMID:14718166), (PMID:20498094), (PMID:21636898), (PMID:24699735), (PMID:25615412) RGD PMID:14718166 PMID:20498094 PMID:21636898 PMID:24699735 PMID:25615412
G Macroh2a1 macroH2A.1 histone involved_in IEA GO_REF:0000104
GO_REF:0000002		 UniProt
InterPro		 GO_REF:0000002 GO_REF:0000104 NCBI chr17:8,479,331...8,542,071
Ensembl chr17:8,479,372...8,542,072 		JBrowse link
G Macroh2a2 macroH2A.2 histone involved_in IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr20:29,678,194...29,727,867
Ensembl chr20:29,678,222...29,727,891 		JBrowse link
G Mcm2 minichromosome maintenance complex component 2 acts_upstream_of_or_within ISO (MGI:2156014|PMID:10531422) RGD PMID:10531422 MGI:2156014 NCBI chr 4:121,346,434...121,360,962
Ensembl chr 4:121,346,434...121,360,847 		JBrowse link
G Naa60 N(alpha)-acetyltransferase 60, NatF catalytic subunit involved_in ISS
ISO		 GO_REF:0000024
(PMID:21981917)		 UniProt
RGD		 PMID:21981917 GO_REF:0000024 NCBI chr10:11,622,554...11,653,078
Ensembl chr10:11,587,916...11,642,755 		JBrowse link
G Nap1l1 nucleosome assembly protein 1-like 1 involved_in IEA
IBA		 GO_REF:0000002
PMID:21873635		 InterPro PMID:21873635 GO_REF:0000002, RGD:13792537 NCBI chr 7:46,933,278...46,957,853
Ensembl chr 7:46,933,356...46,956,593 		JBrowse link
G Nap1l2 nucleosome assembly protein 1-like 2 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr  X:68,174,051...68,176,449
Ensembl chr  X:68,173,987...68,176,666 		JBrowse link
G Nap1l3 nucleosome assembly protein 1-like 3 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:88,347,595...88,350,393
Ensembl chr  X:88,347,598...88,350,393 		JBrowse link
G Nap1l4 nucleosome assembly protein 1-like 4 involved_in ISO
IBA
IEA
ISS		 (PMID:9325046)
PMID:21873635
GO_REF:0000002
GO_REF:0000107
(MGI:5897488|PMID:28366643)
GO_REF:0000024		 RGD
InterPro
Ensembl
UniProt		 PMID:9325046 PMID:28366643 PMID:21873635 GO_REF:0000002 GO_REF:0000024 GO_REF:0000107 MGI:5897488, RGD:13792537 NCBI chr 1:198,709,697...198,746,093
Ensembl chr 1:198,709,701...198,746,020 		JBrowse link
G Nap1l5 nucleosome assembly protein 1-like 5 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 4:88,022,670...88,024,988
Ensembl chr 4:88,022,569...88,024,654 		JBrowse link
G Nasp nuclear autoantigenic sperm protein involved_in ISO (PMID:25615412)
(PMID:14718166)		 RGD PMID:14718166 PMID:25615412 NCBI chr 5:130,057,363...130,083,003
Ensembl chr 5:130,057,363...130,082,928 		JBrowse link
G Npm1 nucleophosmin 1 involved_in ISO (PMID:11602260) RGD PMID:11602260 NCBI chr10:17,741,512...17,751,626
Ensembl chr10:17,739,941...17,751,645 		JBrowse link
G Padi4 peptidyl arginine deiminase 4 involved_in ISS
ISO		 GO_REF:0000024
(MGI:5545819|PMID:24463520)		 UniProt
RGD		 PMID:24463520 GO_REF:0000024 MGI:5545819 NCBI chr 5:153,041,351...153,074,412
Ensembl chr 5:153,041,352...153,074,362 		JBrowse link
G Pkn3 protein kinase N3 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 3:13,350,082...13,363,572
Ensembl chr 3:13,335,041...13,363,567 		JBrowse link
G Pole3 DNA polymerase epsilon 3, accessory subunit involved_in ISO (PMID:14759371) RGD PMID:14759371 NCBI chr 5:75,973,941...75,977,175
Ensembl chr 5:75,974,717...75,977,231 		JBrowse link
G Rbbp4 RB binding protein 4, chromatin remodeling factor involved_in ISO (PMID:14718166) RGD PMID:14718166 NCBI chr 5:141,655,863...141,675,157
Ensembl chr 5:141,638,421...141,675,284 		JBrowse link
G RGD1560617 hypothetical gene supported by NM_053561; AF062594 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:118,084,674...118,085,850
Ensembl chr 7:118,084,696...118,085,850 		JBrowse link
G RGD1562378 histone H4 variant H4-v.1 involved_in ISO (PMID:14718166), (PMID:20498094), (PMID:21636898), (PMID:24699735), (PMID:25615412) RGD PMID:14718166 PMID:20498094 PMID:21636898 PMID:24699735 PMID:25615412
G RGD1563307 similar to Set beta isoform involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 1:86,449,036...86,453,703
Ensembl chr  X:119,908,942...119,909,886
Ensembl chr 1:119,908,942...119,909,886 		JBrowse link
G Rsf1 remodeling and spacing factor 1 involved_in ISO (PMID:11691835), (PMID:12972596) RGD PMID:11691835 PMID:12972596 NCBI chr 1:151,892,055...152,015,089
Ensembl chr 1:151,892,434...152,009,051 		JBrowse link
G Sart3 spliceosome associated factor 3, U4/U6 recycling protein involved_in ISO (PMID:24526689) RGD PMID:24526689 NCBI chr12:42,859,026...42,887,041
Ensembl chr12:42,859,305...42,887,038 		JBrowse link
G Set Set nuclear proto-oncogene involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 3:13,334,564...13,345,598
Ensembl chr 3:13,335,041...13,363,567 		JBrowse link
G Setsip SET like protein involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr19:53,561,262...53,562,780
Ensembl chr19:53,561,190...53,563,819 		JBrowse link
G Shprh SNF2 histone linker PHD RING helicase involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 1:5,528,827...5,602,537
Ensembl chr 1:5,528,888...5,602,527 		JBrowse link
G Smarca5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 involved_in ISO (PMID:11691835), (PMID:12972596), (PMID:14759371) RGD PMID:11691835 PMID:12972596 PMID:14759371 NCBI chr19:27,271,918...27,304,594
Ensembl chr19:27,271,148...27,304,594 		JBrowse link
G Smyd3 SET and MYND domain containing 3 acts_upstream_of_or_within ISO (MGI:5500979|PMID:23752591) RGD PMID:23752591 MGI:5500979 NCBI chr13:90,709,263...91,266,209
Ensembl chr13:90,709,270...91,266,253 		JBrowse link
G Sox9 SRY-box transcription factor 9 involved_in ISO
ISS		 (PMID:20484372)
GO_REF:0000024		 RGD
UniProt		 PMID:20484372 GO_REF:0000024 NCBI chr10:97,806,485...97,811,994
Ensembl chr10:97,806,485...97,811,994 		JBrowse link
G Spty2d1 SPT2 chromatin protein domain containing 1 involved_in ISO
IBA		 (PMID:23378026)
PMID:21873635		 RGD PMID:23378026 PMID:21873635 RGD:13792537 NCBI chr 1:97,531,495...97,549,633
Ensembl chr 1:97,531,508...97,549,581 		JBrowse link
G Tspy1 testis specific protein, Y-linked 1 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002
G Tspy26 testis specific protein, Y-linked 26 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 3:141,690,653...141,692,729
Ensembl chr 3:141,689,899...141,692,670 		JBrowse link
G Tspyl2 TSPY-like 2 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr  X:21,439,478...21,445,208
Ensembl chr  X:21,439,478...21,445,089 		JBrowse link
G Tspyl4 TSPY-like 4 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr20:38,098,756...38,100,752
Ensembl chr20:38,098,677...38,103,053 		JBrowse link
G Tspyl5 TSPY-like 5 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 7:64,881,092...64,885,538
Ensembl chr 7:64,884,225...64,885,457 		JBrowse link
G Ubn1 ubinuclein 1 involved_in ISO (PMID:14718166) RGD PMID:14718166 NCBI chr10:10,496,576...10,532,010
Ensembl chr10:10,496,576...10,532,010 		JBrowse link
nucleotide-excision repair, preincision complex assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gtf2h5 general transcription factor IIH subunit 5 involved_in
acts_upstream_of_or_within		 IBA
ISO		 PMID:21873635
MGI:5514340 (MGI:5506835|PMID:23637614)		 RGD PMID:23637614 PMID:21873635 MGI:5506835, RGD:13792537 NCBI chr 1:46,656,804...46,663,512
Ensembl chr 1:46,656,859...46,664,939 		JBrowse link
G LOC120103497 general transcription factor IIH subunit 5-like involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:27,109,209...27,114,478
Ensembl chr 6:27,111,331...27,111,546 		JBrowse link
positive regulation of RNA polymerase II transcription preinitiation complex assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ahr aryl hydrocarbon receptor acts_upstream_of_or_within ISO (MGI:62922|PMID:8215422) RGD PMID:8215422 MGI:62922 NCBI chr 6:52,234,089...52,271,568
Ensembl chr 6:52,234,089...52,271,568 		JBrowse link
G Cand1 cullin-associated and neddylation-dissociated 1 involved_in IDA PMID:10567521 UniProt PMID:10567521 RGD:8553447 NCBI chr 7:54,681,114...54,719,002
Ensembl chr 7:54,680,900...54,718,993 		JBrowse link
G Creb1 cAMP responsive element binding protein 1 IMP RGD PMID:16891311 RGD:1625706 NCBI chr 9:65,903,511...65,972,562
Ensembl chr 9:65,903,547...65,970,816 		JBrowse link
G Ikzf1 IKAROS family zinc finger 1 acts_upstream_of_or_within ISO MGI:2158690 (MGI:5317044|PMID:21245044) RGD PMID:21245044 MGI:5317044 NCBI chr14:86,255,065...86,340,839
Ensembl chr14:86,255,065...86,342,416 		JBrowse link
G Psmc6 proteasome 26S subunit, ATPase 6 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr15:18,542,585...18,564,057
Ensembl chr15:18,542,563...18,564,055 		JBrowse link
G Tp53 tumor protein p53 involved_in ISO (PMID:24289924) RGD PMID:24289924 NCBI chr10:54,300,070...54,311,525
Ensembl chr10:54,300,048...54,311,524 		JBrowse link
G Wnt10b Wnt family member 10B acts_upstream_of_or_within ISO (MGI:3820325|PMID:19056892) RGD PMID:19056892 MGI:3820325 NCBI chr 7:129,922,088...129,927,892
Ensembl chr 7:129,922,088...129,927,892 		JBrowse link
positive regulation of shelterin complex assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Terf1 telomeric repeat binding factor 1 involved_in ISO (PMID:24270157) RGD PMID:24270157 NCBI chr 5:3,443,103...3,472,377
Ensembl chr 5:3,443,106...3,472,340 		JBrowse link
protein localization to kinetochore involved in kinetochore assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Kntc1 kinetochore associated 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr12:32,769,020...32,839,617
Ensembl chr12:32,769,020...32,839,561 		JBrowse link
regulation of centromere complex assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G H3f3b H3.3 histone B acts_upstream_of_or_within ISO MGI:5474462 (MGI:5474379|PMID:23570311) RGD PMID:23570311 MGI:5474379 NCBI chr10:101,256,488...101,258,712
Ensembl chr10:101,256,480...101,258,709 		JBrowse link
regulation of kinetochore assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rnf4 ring finger protein 4 involved_in ISO
ISS
IEA		 (PMID:20212317)
GO_REF:0000024
GO_REF:0000107		 RGD
UniProt
Ensembl		 PMID:20212317 GO_REF:0000024 GO_REF:0000107 NCBI chr14:76,401,292...76,423,270
Ensembl chr14:76,401,299...76,422,566 		JBrowse link
G Senp6 SUMO specific peptidase 6 involved_in IBA
ISO		 PMID:21873635
(PMID:20212317)		 RGD PMID:20212317 PMID:21873635 RGD:13792537 NCBI chr 8:80,988,675...81,071,606
Ensembl chr 8:80,989,052...81,067,170 		JBrowse link
G Trappc12 trafficking protein particle complex subunit 12 involved_in ISO (PMID:25918224) RGD PMID:25918224 NCBI chr 6:45,321,496...45,386,967
Ensembl chr 6:45,321,497...45,386,952 		JBrowse link
regulation of RNA polymerase II transcription preinitiation complex assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atf7ip activating transcription factor 7 interacting protein involved_in ISO (PMID:12665582) RGD PMID:12665582 NCBI chr 4:169,385,872...169,471,652
Ensembl chr 4:169,385,872...169,471,650 		JBrowse link
RNA polymerase I preinitiation complex assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Baz2a bromodomain adjacent to zinc finger domain, 2A involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 7:523,204...560,911
Ensembl chr 7:523,265...560,659 		JBrowse link
G Pih1d1 PIH1 domain containing 1 involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 1:95,639,597...95,645,295
Ensembl chr 1:95,639,592...95,645,290 		JBrowse link
G Polr1e RNA polymerase I subunit E involved_in
acts_upstream_of_or_within		 IBA
ISO		 PMID:21873635
(MGI:1928312|PMID:8641287)		 RGD PMID:8641287 PMID:21873635 MGI:1928312, RGD:13792537 NCBI chr 5:59,279,456...59,295,346
Ensembl chr 5:59,279,460...59,295,369 		JBrowse link
G Rrn3 RRN3 homolog, RNA polymerase I transcription factor involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr10:2,129,949...2,165,381
Ensembl chr10:2,129,978...2,165,663 		JBrowse link
G Smarca4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 8:20,167,717...20,258,975
Ensembl chr 8:20,167,717...20,258,975 		JBrowse link
G Smarcb1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1 involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr20:12,741,164...12,763,616
Ensembl chr20:12,741,477...12,763,620 		JBrowse link
G Taf1b TATA-box binding protein associated factor, RNA polymerase I subunit B involved_in ISO
IEA
ISS		 (PMID:21921199)
GO_REF:0000002
GO_REF:0000024		 RGD
InterPro
UniProt		 PMID:21921199 GO_REF:0000002 GO_REF:0000024 NCBI chr 6:41,116,980...41,194,593
Ensembl chr 6:41,117,420...41,194,593 		JBrowse link
G Taf1c TATA-box binding protein associated factor, RNA polymerase 1 subunit C involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr19:47,652,451...47,658,971
Ensembl chr19:47,652,452...47,658,971 		JBrowse link
G Ubtf upstream binding transcription factor involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr10:87,258,217...87,274,291
Ensembl chr10:87,258,217...87,272,969 		JBrowse link
RNA polymerase II preinitiation complex assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dr1 down-regulator of transcription 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr14:1,458,223...1,469,578
Ensembl chr14:1,458,223...1,469,638 		JBrowse link
G Esr1 estrogen receptor 1 involved_in IEA
ISO		 GO_REF:0000107
(PMID:9841876)		 Ensembl
RGD		 PMID:9841876 GO_REF:0000107 NCBI chr 1:41,106,335...41,499,104
Ensembl chr 1:41,210,475...41,495,002 		JBrowse link
G Gtf2a2 general transcription factor 2A subunit 2 involved_in ISO
IBA		 (PMID:7958899), (PMID:8626665)
PMID:21873635		 RGD PMID:7958899 PMID:8626665 PMID:21873635 RGD:13792537 NCBI chr 8:70,662,395...70,675,576
Ensembl chr 8:70,662,428...70,675,569 		JBrowse link
G Gtf2b general transcription factor IIB involved_in IEA
IBA
ISS
ISO		 GO_REF:0000107
PMID:21873635
GO_REF:0000024
(PMID:3029109), (PMID:8413225), (PMID:9841876)		 Ensembl
UniProt
RGD		 PMID:3029109 PMID:8413225 PMID:9841876 PMID:21873635 GO_REF:0000024 GO_REF:0000107, RGD:13792537 NCBI chr 2:231,767,317...231,785,626
Ensembl chr 2:231,767,238...231,785,651 		JBrowse link
G Gtf2f2 general transcription factor IIF subunit 2 IDA RGD PMID:7929273 RGD:9681417 NCBI chr15:51,206,027...51,327,166
Ensembl chr15:51,206,031...51,327,253 		JBrowse link
G RGD1562272 similar to TAF11 RNA polymerase II, TATA box binding protein (TBP)-associated factor involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr10:73,781,281...73,783,163
Ensembl chr10:73,781,269...73,782,563 		JBrowse link
G Taf1 TATA-box binding protein associated factor 1 involved_in ISO (PMID:27007846) RGD PMID:27007846 NCBI chr  X:66,640,915...66,716,543
Ensembl chr  X:66,640,982...66,716,543 		JBrowse link
G Taf10 TATA-box binding protein associated factor 10 involved_in ISO (PMID:27007846)
MGI:3606185 (MGI:5918349|PMID:28893950)		 RGD PMID:27007846 PMID:28893950 MGI:5918349 NCBI chr 1:160,095,108...160,096,401
Ensembl chr 1:160,095,108...160,096,376 		JBrowse link
G Taf11 TATA-box binding protein associated factor 11 involved_in ISO
IEA
IBA		 (PMID:27007846)
GO_REF:0000002
PMID:21873635		 RGD
InterPro		 PMID:27007846 PMID:21873635 GO_REF:0000002, RGD:13792537 NCBI chr20:5,955,774...5,963,593
Ensembl chr20:5,955,777...5,961,905 		JBrowse link
G Taf12 TATA-box binding protein associated factor 12 involved_in ISO
IBA		 (PMID:27007846)
PMID:21873635		 RGD PMID:27007846 PMID:21873635 RGD:13792537 NCBI chr 5:144,472,816...144,490,299
Ensembl chr 5:144,472,841...144,488,849 		JBrowse link
G Taf13 TATA-box binding protein associated factor 13 involved_in ISO (PMID:27007846) RGD PMID:27007846 NCBI chr 2:196,205,219...196,215,882
Ensembl chr 2:196,205,243...196,215,878 		JBrowse link
G Taf2 TATA-box binding protein associated factor 2 involved_in ISO (PMID:27007846) RGD PMID:27007846 NCBI chr 7:86,422,613...86,479,616
Ensembl chr 7:86,422,613...86,479,616 		JBrowse link
G Taf3 TATA-box binding protein associated factor 3 involved_in ISO (PMID:27007846) RGD PMID:27007846 NCBI chr17:68,455,389...68,608,367
Ensembl chr17:68,423,909...68,608,367 		JBrowse link
G Taf4 TATA-box binding protein associated factor 4 involved_in ISO (PMID:27007846) RGD PMID:27007846 NCBI chr 3:167,017,992...167,083,413
Ensembl chr 3:167,017,993...167,083,356 		JBrowse link
G Taf5 TATA-box binding protein associated factor 5 involved_in ISO (PMID:27007846) RGD PMID:27007846 NCBI chr 1:245,958,428...245,973,914
Ensembl chr 1:245,958,428...245,973,914 		JBrowse link
G Taf6 TATA-box binding protein associated factor 6 involved_in ISO
IBA		 (PMID:27007846)
PMID:21873635		 RGD PMID:27007846 PMID:21873635 RGD:13792537 NCBI chr12:17,055,864...17,064,244
Ensembl chr12:17,055,873...17,064,247 		JBrowse link
G Taf6l TATA-box binding protein associated factor 6 like involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:205,672,147...205,684,721
Ensembl chr 1:205,672,149...205,684,655 		JBrowse link
G Taf7 TATA-box binding protein associated factor 7 involved_in ISO
IBA		 (PMID:27007846)
PMID:21873635		 RGD PMID:27007846 PMID:21873635 RGD:13792537 NCBI chr18:29,459,937...29,462,086
Ensembl chr18:29,452,943...29,462,134 		JBrowse link
G Taf7l TATA-box binding protein associated factor 7-like involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:97,660,222...97,675,241
Ensembl chr  X:97,660,222...97,675,023 		JBrowse link
G Taf7l-ps1 TAF7-like RNA polymerase II, TATA box binding protein (TBP)-associated factor, pseudogene 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:51,763,259...51,764,401
Ensembl chr 7:51,763,259...51,764,401 		JBrowse link
G Taf8 TATA-box binding protein associated factor 8 involved_in ISO (PMID:27007846) RGD PMID:27007846 NCBI chr 9:13,491,892...13,511,713
Ensembl chr 9:13,491,937...13,511,717 		JBrowse link
G Taf9 TATA-box binding protein associated factor 9 involved_in ISO
IBA
IEA		 (PMID:27007846)
PMID:21873635
GO_REF:0000107		 RGD
Ensembl		 PMID:27007846 PMID:21873635 GO_REF:0000107, RGD:13792537 NCBI chr 2:31,794,316...31,798,324
Ensembl chr 2:31,794,142...31,798,769 		JBrowse link
G Tbp TATA box binding protein involved_in ISO (PMID:27007846), (PMID:9841876) RGD PMID:9841876 PMID:27007846 NCBI chr 1:56,463,330...56,480,430
Ensembl chr 1:56,463,618...56,510,016 		JBrowse link
RNA polymerase III preinitiation complex assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bdp1 B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:31,457,523...31,470,119
Ensembl chr 2:31,378,924...31,470,119 		JBrowse link
transcription preinitiation complex assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Brf1 BRF1, RNA polymerase III transcription initiation factor subunit involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 6:132,034,380...132,081,296
Ensembl chr 6:132,037,272...132,081,278 		JBrowse link
G Brf2 BRF2, RNA polymerase III transcription initiation factor subunit involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr16:64,928,334...64,933,057
Ensembl chr16:64,928,300...64,933,059 		JBrowse link
G Gtf2b general transcription factor IIB involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 2:231,767,317...231,785,626
Ensembl chr 2:231,767,238...231,785,651 		JBrowse link
G Nfkbiz NFKB inhibitor zeta involved_in ISO MGI:3046930 (MGI:3796491|PMID:18319258) RGD PMID:18319258 MGI:3796491 NCBI chr11:44,782,676...44,810,723
Ensembl chr11:44,782,676...44,810,723 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19740
    cellular process 18147
      cellular component organization or biogenesis 6719
        cellular component organization 6485
          cellular component assembly 3031
            protein-containing complex assembly 1595
              protein-DNA complex assembly 173
                DNA recombinase assembly + 5
                DNA replication preinitiation complex assembly + 3
                MCM complex loading 0
                centromere complex assembly + 27
                dosage compensation complex assembly involved in dosage compensation by hyperactivation of X chromosome 0
                dosage compensation complex assembly involved in dosage compensation by hypoactivation of X chromosome 0
                nucleosome assembly + 86
                nucleotide-excision repair, preincision complex assembly 2
                pre-replicative complex assembly + 0
                protein-DNA ISRE complex assembly 0
                shelterin complex assembly + 2
                telomere-telomerase complex assembly 0
                transcription preinitiation complex assembly + 46
paths to the root