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ONTOLOGY REPORT - ANNOTATIONS


Term:regulation of mitochondrial gene expression
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Accession:GO:0062125 term browser browse the term
Definition:Any process that modulates the frequency, rate or extent of mitochondrial gene expression. Gene expression is the process in which a gene's coding sequence is converted into a mature gene product (protein or RNA).



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negative regulation of mitochondrial translation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Malsu1 mitochondrial assembly of ribosomal large subunit 1 involved_in ISO (PMID:22829778) RGD PMID:22829778 NCBI chr 4:78,051,090...78,059,913
Ensembl chr 4:78,051,059...78,059,905
JBrowse link
positive regulation of mitochondrial transcription term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Chchd10 coiled-coil-helix-coiled-coil-helix domain containing 10 involved_in ISO (MGI:5920587|PMID:28585542) RGD PMID:28585542 MGI:5920587 NCBI chr20:12,725,839...12,727,638
Ensembl chr20:12,725,842...12,732,763
JBrowse link
G Prkaa1 protein kinase AMP-activated catalytic subunit alpha 1 involved_in ISO (MGI:6120139|PMID:23283301) RGD PMID:23283301 MGI:6120139 NCBI chr 2:54,240,298...54,275,978
Ensembl chr 2:54,240,137...54,275,978
JBrowse link
G Sirt3 sirtuin 3 involved_in ISO (MGI:6120139|PMID:23283301) RGD PMID:23283301 MGI:6120139 NCBI chr 1:195,942,066...195,964,472
Ensembl chr 1:195,942,073...195,964,808
JBrowse link
positive regulation of mitochondrial translation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G C1qbp complement C1q binding protein involved_in ISS
ISO
GO_REF:0000024
(MGI:5487496|PMID:22904065)
UniProt
RGD
PMID:22904065 GO_REF:0000024 MGI:5487496 NCBI chr10:55,699,954...55,704,605
Ensembl chr10:55,699,954...55,704,649
JBrowse link
G Cdk5rap1 CDK5 regulatory subunit associated protein 1 acts_upstream_of_or_within ISO MGI:5750452 (MGI:5635958|PMID:25738458) RGD PMID:25738458 MGI:5635958 NCBI chr 3:142,838,081...142,872,669
Ensembl chr 3:142,708,028...142,872,677
JBrowse link
G Coa3 cytochrome C oxidase assembly factor 3 involved_in ISO (PMID:23260140) RGD PMID:23260140 NCBI chr10:86,220,192...86,221,173
Ensembl chr10:86,220,194...86,221,178
JBrowse link
G Fastkd2 FAST kinase domains 2 involved_in ISO
IEA
ISS
(PMID:27667664)
GO_REF:0000107
GO_REF:0000024
RGD
Ensembl
UniProt
PMID:27667664 GO_REF:0000024 GO_REF:0000107 NCBI chr 9:65,166,148...65,188,184
Ensembl chr 9:65,168,228...65,188,174
JBrowse link
G Fastkd3 FAST kinase domains 3 involved_in ISO
ISS
(PMID:27789713)
GO_REF:0000024
RGD
UniProt
PMID:27789713 GO_REF:0000024 NCBI chr 1:34,858,342...34,866,988
Ensembl chr 1:34,858,219...34,866,973
JBrowse link
G Mief1 mitochondrial elongation factor 1 involved_in ISO
IEA
(PMID:30215512)
GO_REF:0000107
RGD
Ensembl
PMID:30215512 GO_REF:0000107 NCBI chr 7:111,786,630...111,802,220
Ensembl chr 7:111,786,709...111,802,220
JBrowse link
G Mpv17l2 MPV17 mitochondrial inner membrane protein like 2 involved_in ISO (PMID:24948607) RGD PMID:24948607 NCBI chr16:18,680,106...18,684,212
Ensembl chr16:18,681,826...18,684,212
JBrowse link
G Mrps27 mitochondrial ribosomal protein S27 involved_in ISO (PMID:22841715) RGD PMID:22841715 NCBI chr 2:30,740,007...30,808,577
Ensembl chr 2:30,740,033...30,808,577
JBrowse link
G Ngrn neugrin, neurite outgrowth associated involved_in ISO
ISS
(PMID:27667664)
GO_REF:0000024
RGD
UniProt
PMID:27667664 GO_REF:0000024 NCBI chr 1:134,213,235...134,219,348
Ensembl chr 1:134,213,456...134,219,339
JBrowse link
G Nsun4 NOP2/Sun RNA methyltransferase 4 involved_in ISO (MGI:5573024|PMID:24516400) RGD PMID:24516400 MGI:5573024 NCBI chr 5:129,511,224...129,532,498
Ensembl chr 5:129,512,307...129,532,423
JBrowse link
G Rcc1l RCC1 like involved_in ISO (PMID:27667664) RGD PMID:27667664 NCBI chr12:22,543,125...22,574,042
Ensembl chr12:22,543,734...22,574,036
JBrowse link
G Rmnd1 required for meiotic nuclear division 1 homolog involved_in ISO
IBA
(PMID:25604853)
PMID:21873635
RGD PMID:25604853 PMID:21873635 RGD:13792537 NCBI chr 1:40,859,829...40,894,390
Ensembl chr 1:40,859,829...40,894,314
JBrowse link
G Rpusd3 RNA pseudouridine synthase D3 involved_in ISO (PMID:27667664) RGD PMID:27667664 NCBI chr 4:146,553,230...146,562,794
Ensembl chr 4:146,558,562...146,562,794
JBrowse link
G Rpusd4 RNA pseudouridine synthase D4 involved_in ISO
ISS
(PMID:27667664)
GO_REF:0000024
RGD
UniProt
PMID:27667664 GO_REF:0000024 NCBI chr 8:33,617,384...33,626,873
Ensembl chr 8:33,617,379...33,626,873
JBrowse link
G Trmt10c tRNA methyltransferase 10C, mitochondrial RNase P subunit involved_in ISO
IBA
ISS
(PMID:27132592)
PMID:21873635
GO_REF:0000024
RGD
UniProt
PMID:27132592 PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr11:44,584,388...44,589,466
Ensembl chr11:44,584,113...44,589,568
JBrowse link
G Trub2 TruB pseudouridine synthase family member 2 involved_in ISO
ISS
(PMID:27667664)
GO_REF:0000024
RGD
UniProt
PMID:27667664 GO_REF:0000024 NCBI chr 3:13,049,220...13,059,836
Ensembl chr 3:13,033,745...13,059,930
JBrowse link
G Uqcc2 ubiquinol-cytochrome c reductase complex assembly factor 2 involved_in ISS
ISO
GO_REF:0000024
(PMID:24385928)
UniProt
RGD
PMID:24385928 GO_REF:0000024 NCBI chr20:5,202,837...5,214,541
Ensembl chr20:5,202,837...5,214,164
JBrowse link
regulation of mitochondrial transcription term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mettl4 methyltransferase like 4 involved_in ISO (PMID:32183942) RGD PMID:32183942 NCBI chr 9:111,440,976...111,523,871
Ensembl chr 9:111,441,027...111,464,749
JBrowse link
G Mtres1 mitochondrial transcription rescue factor 1 involved_in ISO
IBA
(PMID:31226201)
PMID:21873635
RGD PMID:31226201 PMID:21873635 RGD:13792537 NCBI chr20:47,022,343...47,038,888
Ensembl chr20:47,022,342...47,038,805
JBrowse link
regulation of mitochondrial translation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Alkbh1 alkB homolog 1, histone H2A dioxygenase involved_in ISO (PMID:27497299) RGD PMID:27497299 NCBI chr 6:107,068,309...107,088,779
Ensembl chr 6:107,068,475...107,088,759
JBrowse link
G Lrpprc leucine-rich pentatricopeptide repeat containing acts_upstream_of_or_within
involved_in
ISO
IEA
MGI:5438913 (MGI:5438202|PMID:22045337)
GO_REF:0000107
RGD
Ensembl
PMID:22045337 GO_REF:0000107 MGI:5438202 NCBI chr 6:9,859,867...9,942,294
Ensembl chr 6:9,859,867...9,942,293
JBrowse link
G Mtg1 mitochondrial ribosome-associated GTPase 1 involved_in ISO (PMID:23396448) RGD PMID:23396448 NCBI chr 1:194,931,543...194,944,278
Ensembl chr 1:194,931,531...194,944,277
JBrowse link
G Mtg2 mitochondrial ribosome-associated GTPase 2 involved_in ISO (PMID:23396448) RGD PMID:23396448 NCBI chr 3:167,165,542...167,181,358
Ensembl chr 3:167,165,982...167,181,358
JBrowse link
G Nsun3 NOP2/Sun RNA methyltransferase 3 involved_in ISO (PMID:27356879), (PMID:27497299) RGD PMID:27356879 PMID:27497299 NCBI chr11:37,490,832...37,575,607
Ensembl chr11:37,490,838...37,568,543
JBrowse link
G Shmt2 serine hydroxymethyltransferase 2 involved_in ISO (PMID:29364879), (PMID:29452640)
(MGI:6148506|PMID:29323231), (MGI:6148666|PMID:29452640)
RGD PMID:29323231 PMID:29364879 PMID:29452640 MGI:6148506 MGI:6148666 NCBI chr 7:63,358,961...63,364,293
Ensembl chr 7:63,358,961...63,364,236
JBrowse link
G Taco1 translational activator of cytochrome c oxidase I involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:5905291 (MGI:5881987|PMID:27319982)
Ensembl
RGD
PMID:27319982 GO_REF:0000107 MGI:5881987 NCBI chr10:91,002,590...91,010,494
Ensembl chr10:91,002,640...91,012,042
JBrowse link
G Tsfm Ts translation elongation factor, mitochondrial involved_in ISS
IEA
ISO
GO_REF:0000024
GO_REF:0000107
(PMID:27677415)
UniProt
Ensembl
RGD
PMID:27677415 GO_REF:0000024 GO_REF:0000107 NCBI chr 7:62,828,997...62,864,784
Ensembl chr 7:62,845,488...62,864,769
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19834
    regulation of biological process 13033
      regulation of metabolic process 6931
        regulation of macromolecule metabolic process 6422
          regulation of gene expression 4964
            regulation of mitochondrial gene expression 31
              regulation of mitochondrial transcription + 5
              regulation of mitochondrial translation + 26
Path 2
Term Annotations click to browse term
  biological_process 19834
    metabolic process 12042
      organic substance metabolic process 11568
        macromolecule metabolic process 9999
          regulation of macromolecule metabolic process 6422
            regulation of gene expression 4964
              regulation of mitochondrial gene expression 31
                regulation of mitochondrial transcription + 5
                regulation of mitochondrial translation + 26
paths to the root