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ONTOLOGY REPORT - ANNOTATIONS


Term:collagen-containing extracellular matrix
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Accession:GO:0062023 term browser browse the term
Definition:An extracellular matrix consisting mainly of proteins (especially collagen) and glycosaminoglycans (mostly as proteoglycans) that provides not only essential physical scaffolding for the cellular constituents but can also initiate crucial biochemical and biomechanical cues required for tissue morphogenesis, differentiation and homeostasis. The components are secreted by cells in the vicinity and form a sheet underlying or overlying cells such as endothelial and epithelial cells.


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collagen-containing extracellular matrix term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Adamts1 ADAM metallopeptidase with thrombospondin type 1 motif, 1 JBrowse link 11 25,342,119 25,350,938 RGD:9681749
G Adamts10 ADAM metallopeptidase with thrombospondin type 1 motif, 10 JBrowse link 7 18,409,147 18,439,012 RGD:1624291
G Adamts15 ADAM metallopeptidase with thrombospondin type 1 motif, 15 JBrowse link 8 31,977,001 32,000,378 RGD:1600115
G Adamts2 ADAM metallopeptidase with thrombospondin type 1 motif, 2 JBrowse link 10 36,098,051 36,304,416 RGD:1600115
G Adamts5 ADAM metallopeptidase with thrombospondin type 1 motif, 5 JBrowse link 11 25,411,174 25,456,639 RGD:1600115
G Adamts8 ADAM metallopeptidase with thrombospondin type 1 motif, 8 JBrowse link 8 32,017,684 32,037,529 RGD:1600115
G Agrn agrin JBrowse link 5 173,589,910 173,622,813 RGD:1624291
G Ahsg alpha-2-HS-glycoprotein JBrowse link 11 81,711,269 81,717,594 RGD:1626075
G Amelx amelogenin, X-linked JBrowse link X 26,439,197 26,450,495 RGD:1600115
RGD:1624291
G Bglap bone gamma-carboxyglutamate protein JBrowse link 2 187,741,770 187,748,445 RGD:1624291
G Bmp7 bone morphogenetic protein 7 JBrowse link 3 170,879,972 170,955,820 RGD:2289041
G Calr calreticulin JBrowse link 19 25,956,771 25,961,666 RGD:2326184
G Ccn3 cellular communication network factor 3 JBrowse link 7 94,375,134 94,382,154 RGD:2306292
G Chadl chondroadherin-like JBrowse link 7 122,915,847 122,929,127 RGD:1600115
RGD:1624291
G Cilp cartilage intermediate layer protein JBrowse link 8 70,760,922 70,775,891 RGD:1600115
RGD:1624291
G Clu clusterin JBrowse link 15 42,626,612 42,665,858 RGD:1600115
G Coch cochlin JBrowse link 6 72,359,702 72,373,710 RGD:1624291
RGD:13792537
G Col10a1 collagen type X alpha 1 chain JBrowse link 20 41,180,295 41,190,664 RGD:1298775
G Col11a1 collagen type XI alpha 1 chain JBrowse link 2 216,863,423 217,056,523 RGD:1600882
G Col12a1 collagen type XII alpha 1 chain JBrowse link 8 87,042,820 87,150,701 RGD:13792537
G Col14a1 collagen type XIV alpha 1 chain JBrowse link 7 95,054,877 95,274,073 RGD:13792537
G Col20a1 collagen type XX alpha 1 chain JBrowse link 3 176,491,292 176,526,009 RGD:13792537
G Col2a1 collagen type II alpha 1 chain JBrowse link 7 139,454,945 139,484,403 RGD:1298775
G Col3a1 collagen type III alpha 1 chain JBrowse link 9 52,023,295 52,059,221 RGD:7257557
RGD:1624291
G Col5a1 collagen type V alpha 1 chain JBrowse link 3 6,430,180 6,581,010 RGD:1624291
G Col5a3 collagen type V alpha 3 chain JBrowse link 8 21,786,324 21,831,751 RGD:5683638
G Col6a2 collagen type VI alpha 2 chain JBrowse link 20 12,773,472 12,801,179 RGD:13792537
G Col7a1 collagen type VII alpha 1 chain JBrowse link 8 117,694,441 117,726,844 RGD:13792537
G Comp cartilage oligomeric matrix protein JBrowse link 16 20,798,437 20,807,070 RGD:1600712
RGD:13792537
G Dmbt1 deleted in malignant brain tumors 1 JBrowse link 1
1
201,620,642
203,149,414
201,689,905
203,228,705
RGD:1599784
G Dspp dentin sialophosphoprotein JBrowse link 14 6,926,972 6,933,079 RGD:1599799
G Ecm1 extracellular matrix protein 1 JBrowse link 2 197,855,468 197,860,973 RGD:1600115
RGD:1624291
G Efemp1 EGF containing fibulin extracellular matrix protein 1 JBrowse link 14 113,202,382 113,294,993 RGD:1600115
G Eln elastin JBrowse link 12 24,978,478 25,021,864 RGD:1600115
G Emilin1 elastin microfibril interfacer 1 JBrowse link 6 26,821,249 26,829,013 RGD:1624291
G F2 coagulation factor II JBrowse link 3 80,529,468 80,542,993 RGD:7387308
G F3 coagulation factor III, tissue factor JBrowse link 2 225,310,686 225,322,281 RGD:1600115
RGD:1624291
G Fbln1 fibulin 1 JBrowse link 7 126,096,793 126,176,468 RGD:1600115
G Fbln2 fibulin 2 JBrowse link 4 122,835,237 122,895,127 RGD:1600115
G Fbln5 fibulin 5 JBrowse link 6 125,644,797 125,723,957 RGD:1624291
RGD:1600115
G Fbn1 fibrillin 1 JBrowse link 3 117,569,708 117,766,160 RGD:1601147
RGD:1624291
G Fgf10 fibroblast growth factor 10 JBrowse link 2 51,673,480 51,747,533 RGD:1600115
RGD:1624291
G Fgfr2 fibroblast growth factor receptor 2 JBrowse link 1 200,590,951 200,696,946 RGD:1600115
RGD:1624291
G Fmod fibromodulin JBrowse link 13 50,874,886 50,885,503 RGD:2315082
RGD:1600115
G Fn1 fibronectin 1 JBrowse link 9 78,900,111 78,969,018 RGD:1624291
G Gh1 growth hormone 1 JBrowse link 10 94,486,204 94,488,181 RGD:12904880
G Gpc1 glypican 1 JBrowse link 9 99,998,275 100,026,818 RGD:1600115
G Gpc2 glypican 2 JBrowse link 12 19,593,041 19,599,374 RGD:1600115
G Gpc3 glypican 3 JBrowse link X 139,579,268 139,947,093 RGD:1600115
G Gpc4 glypican 4 JBrowse link X 139,354,325 139,464,876 RGD:1600115
G Gpc6 glypican 6 JBrowse link 15 102,164,091 103,174,721 RGD:1600115
G Grm1 glutamate metabotropic receptor 1 JBrowse link 1 4,753,141 5,165,859 RGD:1600115
G Hsp90aa1 heat shock protein 90 alpha family class A member 1 JBrowse link 6 135,107,262 135,112,793 RGD:2316936
G Hspg2 heparan sulfate proteoglycan 2 JBrowse link 5 155,812,096 155,913,751 RGD:1624263
G Htra1 HtrA serine peptidase 1 JBrowse link 1 201,499,067 201,548,508 RGD:7394756
G Lamb1 laminin subunit beta 1 JBrowse link 6 50,528,796 50,596,593 RGD:1624263
G Lamc1 laminin subunit gamma 1 JBrowse link 13 70,656,727 70,783,515 RGD:1624263
G LOC100911854 mannose-binding protein C-like JBrowse link 1 248,723,370 248,730,969 RGD:13792537
G LOC103690116 osteomodulin JBrowse link 17 14,635,588 14,646,368 RGD:1600115
G Lrrc15 leucine rich repeat containing 15 JBrowse link 11 74,040,846 74,052,179 RGD:1600115
RGD:1624291
G Ltbp1 latent transforming growth factor beta binding protein 1 JBrowse link 6 21,203,502 21,600,441 RGD:10412061
RGD:1624291
RGD:1600115
G Ltbp3 latent transforming growth factor beta binding protein 3 JBrowse link 1 221,099,155 221,116,096 RGD:1600115
RGD:1624291
G Ltbp4 latent transforming growth factor beta binding protein 4 JBrowse link 1 84,118,046 84,152,095 RGD:1600115
RGD:1624291
G Matn1 matrilin 1 JBrowse link 5 149,077,412 149,086,957 RGD:13792537
G Matn2 matrilin 2 JBrowse link 7 72,985,832 73,210,093 RGD:13792537
G Matn3 matrilin 3 JBrowse link 6 34,071,428 34,091,048 RGD:13792537
G Matn4 matrilin 4 JBrowse link 3 160,838,632 160,853,650 RGD:13792537
G Mbl1 mannose-binding lectin (protein A) 1 JBrowse link 16 18,736,154 18,742,193 RGD:13792537
G Mbl2 mannose binding lectin 2 JBrowse link 1 248,435,069 248,442,669 RGD:13792537
G Mfap4 microfibril associated protein 4 JBrowse link 10 47,765,463 47,768,484 RGD:1624291
G Mgp matrix Gla protein JBrowse link 4 170,856,783 170,860,105 RGD:2293597
RGD:1600115
G Myoc myocilin JBrowse link 13 80,517,531 80,527,928 RGD:1600115
RGD:1624291
G Ndp norrin cystine knot growth factor NDP JBrowse link X 6,791,090 6,815,586 RGD:1624291
G Npnt nephronectin JBrowse link 2 238,001,767 238,068,886 RGD:1624291
G Omd osteomodulin JBrowse link 17 15,476,100 15,484,324 RGD:1600115
G Pcsk6 proprotein convertase subtilisin/kexin type 6 JBrowse link 1 126,749,508 126,947,392 RGD:1600115
RGD:13792537
RGD:1624291
G Plat plasminogen activator, tissue type JBrowse link 16 74,098,263 74,122,897 RGD:1624291
G Plod3 procollagen-lysine, 2-oxoglutarate 5-dioxygenase 3 JBrowse link 12 22,716,421 22,726,982 RGD:1624291
RGD:1600115
G Plscr1 phospholipid scramblase 1 JBrowse link 8 99,625,523 99,645,882 RGD:1600115
RGD:1624291
G Podnl1 podocan-like 1 JBrowse link 19 25,240,001 25,246,583 RGD:1600115
RGD:1624291
G Postn periostin JBrowse link 2 143,656,820 143,688,087 RGD:1600115
RGD:1624291
G Prelp proline and arginine rich end leucine rich repeat protein JBrowse link 13 50,749,526 50,773,934 RGD:1600115
G Pxdn peroxidasin JBrowse link 6 48,866,496 48,982,368 RGD:1600115
RGD:1624291
G Rarres2 retinoic acid receptor responder 2 JBrowse link 4 78,205,809 78,208,956 RGD:1600115
RGD:1624291
G Rpsa ribosomal protein SA JBrowse link 8 128,806,053 128,809,987 RGD:2299067
G Serpine1 serpin family E member 1 JBrowse link 12 22,641,104 22,651,482 RGD:1600115
RGD:1624291
G Serpine2 serpin family E member 2 JBrowse link 9 85,560,852 85,629,410 RGD:1600115
RGD:1624291
G Sfrp1 secreted frizzled-related protein 1 JBrowse link 16 73,372,007 73,410,777 RGD:1600115
RGD:1624291
G Sfrp2 secreted frizzled-related protein 2 JBrowse link 2 182,723,732 182,731,277 RGD:1624291
G Smoc2 SPARC related modular calcium binding 2 JBrowse link 1 56,242,289 56,374,106 RGD:1600115
G Snorc secondary ossification center associated regulator of chondrocyte maturation JBrowse link 9 94,562,839 94,568,312 RGD:1624291
G Sod3 superoxide dismutase 3 JBrowse link 14 60,958,583 60,971,143 RGD:1581086
RGD:1624291
G Sparcl1 SPARC like 1 JBrowse link 14 6,994,261 7,025,309 RGD:1600115
G Ssc5d scavenger receptor cysteine rich family member with 5 domains JBrowse link 1 72,443,750 72,462,293 RGD:1600115
RGD:1624291
G Tecta tectorin alpha JBrowse link 8 46,603,728 46,675,658 RGD:1600115
G Tgfb1 transforming growth factor, beta 1 JBrowse link 1 82,480,875 82,497,196 RGD:11073670
G Tgfb2 transforming growth factor, beta 2 JBrowse link 13 105,039,639 105,142,010 RGD:1600115
RGD:1624291
G Tgfb3 transforming growth factor, beta 3 JBrowse link 6 109,913,757 109,936,217 RGD:1600115
RGD:1624291
G Tgfbr3 transforming growth factor beta receptor 3 JBrowse link 14 3,506,416 3,680,508 RGD:8554613
G Tgm4 transglutaminase 4 JBrowse link 8 132,117,279 132,157,485 RGD:1600115
RGD:13792537
RGD:1624291
G Thbs1 thrombospondin 1 JBrowse link 3 109,862,120 109,873,466 RGD:13792537
G Thbs2 thrombospondin 2 JBrowse link 1 56,653,929 56,683,571 RGD:13792537
G Thbs3 thrombospondin 3 JBrowse link 2 188,528,979 188,540,738 RGD:13792537
G Thbs4 thrombospondin 4 JBrowse link 2 22,343,727 22,385,855 RGD:1600115
RGD:13792537
RGD:1624291
G Tnr tenascin R JBrowse link 13 77,602,249 77,678,385 RGD:1600115
G Vcan versican JBrowse link 2 18,490,102 18,587,340 RGD:1299255
G Vit vitrin JBrowse link 6 1,091,817 1,208,888 RGD:13792537
G Vtn vitronectin JBrowse link 10 65,767,960 65,771,040 RGD:10003088
RGD:1624291
G Vwa1 von Willebrand factor A domain containing 1 JBrowse link 5 173,216,737 173,221,923 RGD:13792537
G Vwa2 von Willebrand factor A domain containing 2 JBrowse link 1 277,689,478 277,730,407 RGD:13792537
G Vwf von Willebrand factor JBrowse link 4 158,085,059 158,219,525 RGD:1599021
RGD:1624291
RGD:1600115
G Wnt2 Wnt family member 2 JBrowse link 4 45,286,845 45,332,899 RGD:1600115
RGD:1624291
G Zg16 zymogen granule protein 16 JBrowse link 1 198,483,800 198,486,157 RGD:1600115
RGD:1624291
G Zp1 zona pellucida glycoprotein 1 JBrowse link 1 226,966,366 226,972,746 RGD:1600115
RGD:1624291
G Zp2 zona pellucida glycoprotein 2 JBrowse link 1 189,899,906 189,911,650 RGD:1600115
RGD:1624291
G Zp3 zona pellucida glycoprotein 3 JBrowse link 12 23,735,225 23,752,734 RGD:1600115
RGD:1624291
basement membrane term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Acan aggrecan JBrowse link 1 140,762,758 140,824,441 RGD:1624291
RGD:1600115
G Ache acetylcholinesterase JBrowse link 12 22,472,358 22,477,052 RGD:1624291
RGD:1600115
G Adamts1 ADAM metallopeptidase with thrombospondin type 1 motif, 1 JBrowse link 11 25,342,119 25,350,938 RGD:1624291
RGD:1600115
G Agrn agrin JBrowse link 5 173,589,910 173,622,813 RGD:1578369
RGD:13792537
RGD:1600115
RGD:1624291
G Alb albumin JBrowse link 14 19,176,275 19,191,793 RGD:1625719
G Amelx amelogenin, X-linked JBrowse link X 26,439,197 26,450,495 RGD:1624291
G Amtn amelotin JBrowse link 14 21,282,488 21,301,966 RGD:2304068
RGD:13792537
RGD:1624291
G Ang angiogenin JBrowse link 15 28,022,926 28,028,636 RGD:1624291
G Anxa2 annexin A2 JBrowse link 8 75,687,134 75,723,589 RGD:1600115
G Cask calcium/calmodulin dependent serine protein kinase JBrowse link X 9,815,652 10,156,155 RGD:1624291
G Ccdc80 coiled-coil domain containing 80 JBrowse link 11 60,645,660 60,679,249 RGD:1624291
RGD:1600115
G Cd151 CD151 molecule (Raph blood group) JBrowse link 1 214,446,659 214,450,668 RGD:1624291
G Col15a1 collagen type XV alpha 1 chain JBrowse link 5 62,840,360 62,950,240 RGD:1624291
RGD:1600115
G Col18a1 collagen type XVIII alpha 1 chain JBrowse link 20 12,225,202 12,332,858 RGD:1624291
G Col28a1 collagen type XXVIII alpha 1 chain JBrowse link 4 34,048,074 34,198,558 RGD:1624291
RGD:1600115
G Col2a1 collagen type II alpha 1 chain JBrowse link 7 139,454,945 139,484,403 RGD:1624291
RGD:1600115
G Col4a1 collagen type IV alpha 1 chain JBrowse link 16 83,522,162 83,632,153 RGD:1624291
G Col4a2 collagen type IV alpha 2 chain JBrowse link 16 83,386,388 83,522,169 RGD:1624291
G Col4a3 collagen type IV alpha 3 chain JBrowse link 9 88,357,528 88,484,735 RGD:1624291
G Col4a4 collagen type IV alpha 4 chain JBrowse link 9 88,314,763 88,357,183 RGD:1624291
G Col4a5 collagen type IV alpha 5 chain JBrowse link X 112,769,595 112,983,720 RGD:1624291
G Col4a6 collagen type IV alpha 6 chain JBrowse link X 112,405,647 112,768,337 RGD:1624291
G Col5a1 collagen type V alpha 1 chain JBrowse link 3 6,430,180 6,581,010 RGD:1624291
RGD:1600115
G Col7a1 collagen type VII alpha 1 chain JBrowse link 8 117,694,441 117,726,844 RGD:1624291
G Colq collagen like tail subunit of asymmetric acetylcholinesterase JBrowse link 16 7,626,380 7,681,621 RGD:728369
G Cst3 cystatin C JBrowse link 3 143,219,671 143,223,544 RGD:2306505
G Dag1 dystroglycan 1 JBrowse link 8 116,980,501 116,993,182 RGD:1624291
RGD:1600115
G Dlg1 discs large MAGUK scaffold protein 1 JBrowse link 11 72,164,566 72,378,895 RGD:1624291
RGD:1600115
G Efemp1 EGF containing fibulin extracellular matrix protein 1 JBrowse link 14 113,202,382 113,294,993 RGD:10401659
G Efna5 ephrin A5 JBrowse link 9 110,054,002 110,329,878 RGD:1624291
RGD:1600115
G Egfl6 EGF-like-domain, multiple 6 JBrowse link X 29,430,789 29,488,737 RGD:1624291
RGD:1600115
G Egflam EGF-like, fibronectin type III and laminin G domains JBrowse link 2 56,503,002 56,681,334 RGD:1624291
RGD:13792537
RGD:1600115
G Entpd1 ectonucleoside triphosphate diphosphohydrolase 1 JBrowse link 1 259,692,020 259,818,922 RGD:1624291
G Entpd2 ectonucleoside triphosphate diphosphohydrolase 2 JBrowse link 3 2,617,795 2,623,818 RGD:1624291
RGD:1600115
G Fbln1 fibulin 1 JBrowse link 7 126,096,793 126,176,468 RGD:1624291
RGD:1600115
G Fbn1 fibrillin 1 JBrowse link 3 117,569,708 117,766,160 RGD:1624291
RGD:1600115
G Fgf9 fibroblast growth factor 9 JBrowse link 15 38,341,657 38,386,945 RGD:2289861
G Fn1 fibronectin 1 JBrowse link 9 78,900,111 78,969,018 RGD:1578551
RGD:1624291
RGD:1600115
G Fras1 Fraser extracellular matrix complex subunit 1 JBrowse link 14 14,438,392 14,853,016 RGD:1600115
RGD:1624291
G Frem1 Fras1 related extracellular matrix 1 JBrowse link 5 101,018,009 101,166,794 RGD:1624291
RGD:1600115
G Frem2 FRAS1 related extracellular matrix 2 JBrowse link 2 142,747,501 142,885,604 RGD:1624291
RGD:1600115
G Frem3 FRAS1 related extracellular matrix 3 JBrowse link 19 30,973,329 31,032,331 RGD:1624291
RGD:1600115
G Gsto1 glutathione S-transferase omega 1 JBrowse link 1 267,607,437 267,617,387 RGD:5490519
G Hmcn1 hemicentin 1 JBrowse link 13 67,799,791 68,360,664 RGD:1624291
RGD:1600115
G Hmcn2 hemicentin 2 JBrowse link 3 10,384,873 10,536,529 RGD:1624291
G Hspg2 heparan sulfate proteoglycan 2 JBrowse link 5 155,812,096 155,913,751 RGD:1624291
G Itga6 integrin subunit alpha 6 JBrowse link 3 58,442,904 58,515,124 RGD:1624291
RGD:1600115
G Itgb1 integrin subunit beta 1 JBrowse link 19 61,677,512 61,725,537 RGD:1581320
RGD:2325689
G Itgb4 integrin subunit beta 4 JBrowse link 10 104,524,000 104,560,180 RGD:1624291
G Lad1 ladinin 1 JBrowse link 13 52,645,257 52,659,619 RGD:1600115
G Lama1 laminin subunit alpha 1 JBrowse link 9 115,916,907 116,042,123 RGD:1624291
RGD:13792537
G Lama2 laminin subunit alpha 2 JBrowse link 1 18,491,264 19,143,486 RGD:1600203
RGD:13792537
RGD:1624291
G Lama3 laminin subunit alpha 3 JBrowse link 18 3,704,866 3,941,215 RGD:1624291
G Lama4 laminin subunit alpha 4 JBrowse link 20 44,060,715 44,201,966 RGD:1624291
RGD:1600115
G Lama5 laminin subunit alpha 5 JBrowse link 3 175,553,042 175,601,112 RGD:1624291
G Lamb1 laminin subunit beta 1 JBrowse link 6 50,528,796 50,596,593 RGD:1624291
G Lamb2 laminin subunit beta 2 JBrowse link 8 117,268,335 117,280,517 RGD:1624291
G Lamb3 laminin subunit beta 3 JBrowse link 13 112,031,614 112,073,187 RGD:1624291
G Lamc1 laminin subunit gamma 1 JBrowse link 13 70,656,727 70,783,515 RGD:1624291
RGD:13792537
G Lamc2 laminin subunit gamma 2 JBrowse link 13 70,566,643 70,632,126 RGD:1624291
RGD:13792537
G Lamc3 laminin subunit gamma 3 JBrowse link 3 9,265,407 9,327,107 RGD:1624291
RGD:13792537
G LOC108348074 collagen alpha-1(XV) chain-like JBrowse link 5 64,475,618 64,543,510 RGD:1600115
G Loxl1 lysyl oxidase-like 1 JBrowse link 8 63,067,757 63,092,124 RGD:7394733
G Loxl2 lysyl oxidase-like 2 JBrowse link 15 51,276,022 51,365,238 RGD:8553848
G Matn2 matrilin 2 JBrowse link 7 72,985,832 73,210,093 RGD:1624291
RGD:1600115
G Megf9 multiple EGF-like-domains 9 JBrowse link 5 86,586,996 86,696,388 RGD:1624291
G Mmrn2 multimerin 2 JBrowse link 16 10,727,552 10,749,303 RGD:1624291
RGD:1600115
G Nid1 nidogen 1 JBrowse link 17 90,553,161 90,627,133 RGD:1624291
RGD:1600115
G Nid2 nidogen 2 JBrowse link 15 4,893,999 4,951,893 RGD:1624291
RGD:1600115
G Npnt nephronectin JBrowse link 2 238,001,767 238,068,886 RGD:1624291
RGD:1600115
G Ntn1 netrin 1 JBrowse link 10 54,761,925 54,982,072 RGD:1624291
RGD:13792537
RGD:1600115
G Ntn3 netrin 3 JBrowse link 10 13,577,725 13,580,821 RGD:13792537
G Ntn4 netrin 4 JBrowse link 7 34,533,543 34,649,330 RGD:1624291
G Ntn5 netrin 5 JBrowse link 1 101,668,354 101,678,117 RGD:13792537
G P3h1 prolyl 3-hydroxylase 1 JBrowse link 5 138,279,597 138,294,280 RGD:633221
G P3h2 prolyl 3-hydroxylase 2 JBrowse link 11 78,028,885 78,169,746 RGD:1600115
RGD:1624291
G Papln papilin, proteoglycan-like sulfated glycoprotein JBrowse link 6 107,245,573 107,282,256 RGD:1624291
G Ptn pleiotrophin JBrowse link 4 64,239,156 64,330,996 RGD:10044215
G Rell2 RELT-like 2 JBrowse link 18 31,094,965 31,098,536 RGD:1624291
RGD:1600115
G Rpsa ribosomal protein SA JBrowse link 8 128,806,053 128,809,987 RGD:2299067
G Runx1 RUNX family transcription factor 1 JBrowse link 11 32,765,147 33,003,061 RGD:1624291
G Serpinf1 serpin family F member 1 JBrowse link 10 62,241,750 62,254,145 RGD:1359799
G Smc3 structural maintenance of chromosomes 3 JBrowse link 1 274,310,120 274,352,856 RGD:61563
RGD:12793010
G Smoc1 SPARC related modular calcium binding 1 JBrowse link 6 104,718,403 104,879,611 RGD:1624291
G Smoc2 SPARC related modular calcium binding 2 JBrowse link 1 56,242,289 56,374,106 RGD:1624291
RGD:1600115
G Sparc secreted protein acidic and cysteine rich JBrowse link 10 40,742,390 40,764,232 RGD:1600115
G Spn sialophorin JBrowse link 1 198,572,999 198,585,664 RGD:1624291
G Tf transferrin JBrowse link 8 111,694,570 111,721,275 RGD:1625719
G Tgfb2 transforming growth factor, beta 2 JBrowse link 13 105,039,639 105,142,010 RGD:2302094
G Tgfbi transforming growth factor, beta induced JBrowse link 17 8,400,123 8,429,338 RGD:1304421
G Thbs2 thrombospondin 2 JBrowse link 1 56,653,929 56,683,571 RGD:1624291
RGD:1600115
G Thbs4 thrombospondin 4 JBrowse link 2 22,343,727 22,385,855 RGD:1600115
RGD:1624291
G Timp1 TIMP metallopeptidase inhibitor 1 JBrowse link X 1,364,771 1,369,451 RGD:2290365
RGD:1624291
G Timp2 TIMP metallopeptidase inhibitor 2 JBrowse link 10 107,338,465 107,386,072 RGD:1624291
G Timp3 TIMP metallopeptidase inhibitor 3 JBrowse link 7 23,543,125 23,594,170 RGD:1624291
RGD:1600115
G Tinag tubulointerstitial nephritis antigen JBrowse link 8 84,122,113 84,320,714 RGD:1624291
RGD:1600115
G Tmeff1 transmembrane protein with EGF-like and two follistatin-like domains 1 JBrowse link 5 64,326,733 64,412,531 RGD:13792537
G Tmeff2 transmembrane protein with EGF-like and two follistatin-like domains 2 JBrowse link 9 55,379,130 55,673,704 RGD:13792537
G Tnc tenascin C JBrowse link 5 79,789,686 79,874,555 RGD:1624291
RGD:1600115
G Ush2a usherin JBrowse link 13 106,750,738 107,434,195 RGD:1624291
G Vegfa vascular endothelial growth factor A JBrowse link 9 17,340,341 17,355,681 RGD:628330
G Vtn vitronectin JBrowse link 10 65,767,960 65,771,040 RGD:10003096
G Vwa1 von Willebrand factor A domain containing 1 JBrowse link 5 173,216,737 173,221,923 RGD:1624291
RGD:1600115
G Vwa2 von Willebrand factor A domain containing 2 JBrowse link 1 277,689,478 277,730,407 RGD:1624291
RGD:13792537
G Vwc2 von Willebrand factor C domain containing 2 JBrowse link 14 91,201,141 91,348,219 RGD:1624291
RGD:1600115
collagen type I trimer term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Col1a1 collagen type I alpha 1 chain JBrowse link 10 82,745,801 82,762,790 RGD:1624291
RGD:13792537
G Col1a2 collagen type I alpha 2 chain JBrowse link 4 31,534,225 31,569,152 RGD:1624291
RGD:13792537
collagen type II trimer term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Col2a1 collagen type II alpha 1 chain JBrowse link 7 139,454,945 139,484,403 RGD:1624291
RGD:13792537
RGD:1600115
collagen type III trimer term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Col3a1 collagen type III alpha 1 chain JBrowse link 9 52,023,295 52,059,221 RGD:1624291
RGD:13792537
collagen type IV trimer term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Col23a1 collagen type XXIII alpha 1 chain JBrowse link 10 34,846,618 34,934,991 RGD:13792537
G Col4a1 collagen type IV alpha 1 chain JBrowse link 16 83,522,162 83,632,153 RGD:1624291
RGD:13792537
G Col4a2 collagen type IV alpha 2 chain JBrowse link 16 83,386,388 83,522,169 RGD:1624291
RGD:13792537
G Col4a3 collagen type IV alpha 3 chain JBrowse link 9 88,357,528 88,484,735 RGD:1624291
RGD:13792537
G Col4a4 collagen type IV alpha 4 chain JBrowse link 9 88,314,763 88,357,183 RGD:1624291
RGD:13792537
G Col4a5 collagen type IV alpha 5 chain JBrowse link X 112,769,595 112,983,720 RGD:1624291
RGD:13792537
G Col4a6 collagen type IV alpha 6 chain JBrowse link X 112,405,647 112,768,337 RGD:1624291
RGD:13792537
G LOC100911572 collagen alpha-3(IV) chain-like JBrowse link 9 90,856,897 90,877,771 RGD:13792537
G LOC103693323 collagen alpha-1(XXIII) chain JBrowse link 10 36,741,139 37,031,200 RGD:13792537
collagen type V trimer term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Col5a1 collagen type V alpha 1 chain JBrowse link 3 6,430,180 6,581,010 RGD:70693
RGD:13792537
RGD:1624291
RGD:1600115
G Col5a2 collagen type V alpha 2 chain JBrowse link 9 52,091,088 52,238,735 RGD:70694
RGD:13792537
RGD:1624291
G Col5a3 collagen type V alpha 3 chain JBrowse link 8 21,786,324 21,831,751 RGD:70693
RGD:1624291
collagen type XI trimer term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Col11a1 collagen type XI alpha 1 chain JBrowse link 2 216,863,423 217,056,523 RGD:1624291
RGD:13792537
G Marco macrophage receptor with collagenous structure JBrowse link 16 85,115,199 85,147,683 RGD:13792537
collagen type XII trimer term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Col12a1 collagen type XII alpha 1 chain JBrowse link 8 87,042,820 87,150,701 RGD:727275
collagen type XVIII trimer term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Col18a1 collagen type XVIII alpha 1 chain JBrowse link 20 12,225,202 12,332,858 RGD:632362
cone matrix sheath term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Rbp3 retinol binding protein 3 JBrowse link 16 10,277,775 10,286,243 RGD:13792537
RGD:1624291
EMILIN complex term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Emilin1 elastin microfibril interfacer 1 JBrowse link 6 26,821,249 26,829,013 RGD:1624291
RGD:1600115
extracellular matrix of synaptic cleft term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Sparcl1 SPARC like 1 JBrowse link 14 6,994,261 7,025,309 RGD:13702411
fibrillar collagen trimer term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Col27a1 collagen type XXVII alpha 1 chain JBrowse link 5 79,054,004 79,172,442 RGD:1624291
RGD:1600115
G Lum lumican JBrowse link 7 38,820,058 38,826,862 RGD:1624291
RGD:1600115
interphotoreceptor matrix term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Impg2 interphotoreceptor matrix proteoglycan 2 JBrowse link 11 46,615,091 46,693,565 RGD:1600115
G Rbp3 retinol binding protein 3 JBrowse link 16 10,277,775 10,286,243 RGD:6893658
G Rtbdn retbindin JBrowse link 19 26,065,784 26,073,194 RGD:1624291
RGD:1600115
interstitial matrix term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Abi3bp ABI family member 3 binding protein JBrowse link 11 46,206,932 46,422,791 RGD:1624291
RGD:1600115
G Adamtsl4 ADAMTS-like 4 JBrowse link 2 197,803,572 197,815,058 RGD:1624291
RGD:1600115
G Ccdc80 coiled-coil domain containing 80 JBrowse link 11 60,645,660 60,679,249 RGD:1624291
RGD:1600115
G Col14a1 collagen type XIV alpha 1 chain JBrowse link 7 95,054,877 95,274,073 RGD:1624291
G Ecm2 extracellular matrix protein 2 JBrowse link 17 15,533,760 15,566,403 RGD:1624291
G Egflam EGF-like, fibronectin type III and laminin G domains JBrowse link 2 56,503,002 56,681,334 RGD:1624291
RGD:1600115
G Igf1 insulin-like growth factor 1 JBrowse link 7 28,412,123 28,491,815 RGD:1580475
G Kazald1 Kazal-type serine peptidase inhibitor domain 1 JBrowse link 1 264,827,739 264,831,152 RGD:1624291
RGD:1600115
G Mamdc2 MAM domain containing 2 JBrowse link 1 241,071,110 241,223,798 RGD:1624291
G Nav2 neuron navigator 2 JBrowse link 1 104,575,765 104,941,554 RGD:1624291
RGD:1600115
G Nepn nephrocan JBrowse link 20 33,527,932 33,543,860 RGD:1600115
G RGD1562885 similar to RIKEN cDNA 2300002M23 JBrowse link 20 3,689,608 3,691,164 RGD:1624291
G Smoc2 SPARC related modular calcium binding 2 JBrowse link 1 56,242,289 56,374,106 RGD:1624291
RGD:1600115
G Tnc tenascin C JBrowse link 5 79,789,686 79,874,555 RGD:1624291
RGD:1600115
G Vit vitrin JBrowse link 6 1,091,817 1,208,888 RGD:1624291
RGD:13792537
G Vwa1 von Willebrand factor A domain containing 1 JBrowse link 5 173,216,737 173,221,923 RGD:1624291
RGD:1600115
G Vwc2 von Willebrand factor C domain containing 2 JBrowse link 14 91,201,141 91,348,219 RGD:1624291
RGD:1600115
laminin complex term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Lama1 laminin subunit alpha 1 JBrowse link 9 115,916,907 116,042,123 RGD:1624291
G Lamb1 laminin subunit beta 1 JBrowse link 6 50,528,796 50,596,593 RGD:1624291
RGD:13792537
G Lamb2 laminin subunit beta 2 JBrowse link 8 117,268,335 117,280,517 RGD:1624291
RGD:13792537
G Lamb3 laminin subunit beta 3 JBrowse link 13 112,031,614 112,073,187 RGD:13792537
G Megf9 multiple EGF-like-domains 9 JBrowse link 5 86,586,996 86,696,388 RGD:13792537
G Ntn4 netrin 4 JBrowse link 7 34,533,543 34,649,330 RGD:13792537
G Pmp22 peripheral myelin protein 22 JBrowse link 10 49,538,588 49,568,583 RGD:1624291
laminin-1 complex term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Lama1 laminin subunit alpha 1 JBrowse link 9 115,916,907 116,042,123 RGD:1624291
RGD:1600115
G Lamb1 laminin subunit beta 1 JBrowse link 6 50,528,796 50,596,593 RGD:1624291
RGD:1600115
G Lamc1 laminin subunit gamma 1 JBrowse link 13 70,656,727 70,783,515 RGD:633159
laminin-10 complex term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Lama5 laminin subunit alpha 5 JBrowse link 3 175,553,042 175,601,112 RGD:1624291
RGD:1600115
G Lamb1 laminin subunit beta 1 JBrowse link 6 50,528,796 50,596,593 RGD:1624291
RGD:1600115
G Lamc1 laminin subunit gamma 1 JBrowse link 13 70,656,727 70,783,515 RGD:1624291
laminin-2 complex term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Lamb1 laminin subunit beta 1 JBrowse link 6 50,528,796 50,596,593 RGD:1624291
RGD:1600115
G Lamc2 laminin subunit gamma 2 JBrowse link 13 70,566,643 70,632,126 RGD:633095
laminin-3 complex term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Lama1 laminin subunit alpha 1 JBrowse link 9 115,916,907 116,042,123 RGD:1624291
RGD:1600115
G Lama3 laminin subunit alpha 3 JBrowse link 18 3,704,866 3,941,215 RGD:633107
G Lamb2 laminin subunit beta 2 JBrowse link 8 117,268,335 117,280,517 RGD:1624291
RGD:1600115
laminin-5 complex term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Lama3 laminin subunit alpha 3 JBrowse link 18 3,704,866 3,941,215 RGD:1624291
G Lama5 laminin subunit alpha 5 JBrowse link 3 175,553,042 175,601,112 RGD:633095
RGD:13792537
G Lamb3 laminin subunit beta 3 JBrowse link 13 112,031,614 112,073,187 RGD:1624291
RGD:1600115
G Lamc2 laminin subunit gamma 2 JBrowse link 13 70,566,643 70,632,126 RGD:1624291
laminin-8 complex term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Lamb1 laminin subunit beta 1 JBrowse link 6 50,528,796 50,596,593 RGD:1624291
RGD:1600115
perineuronal net term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Acan aggrecan JBrowse link 1 140,762,758 140,824,441 RGD:2315810
G Bcan brevican JBrowse link 2 187,359,674 187,373,133 RGD:9589827
G Ncan neurocan JBrowse link 16 21,050,243 21,076,707 RGD:9589827
G Ptprz1 protein tyrosine phosphatase, receptor type Z1 JBrowse link 4 49,941,046 50,140,764 RGD:1624291
RGD:1600115
RGD:9589827
G Tnr tenascin R JBrowse link 13 77,602,249 77,678,385 RGD:1624291
RGD:1600115
G Vcan versican JBrowse link 2 18,490,102 18,587,340 RGD:9589827
perisynaptic extracellular matrix term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Acan aggrecan JBrowse link 1 140,762,758 140,824,441 RGD:1600115
RGD:1624291
G Bcan brevican JBrowse link 2 187,359,674 187,373,133 RGD:13702202
RGD:13702210
G Tnc tenascin C JBrowse link 5 79,789,686 79,874,555 RGD:1600115
RGD:1624291
G Tnr tenascin R JBrowse link 13 77,602,249 77,678,385 RGD:13702357

Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 18523
    cellular anatomical entity 18191
      extracellular matrix 369
        collagen-containing extracellular matrix 223
          EMILIN complex 1
          anchoring collagen complex + 1
          basement membrane + 109
          collagen and cuticulin-based cuticle extracellular matrix + 0
          collagen type XXVI trimer 0
          collagen type XXVIII trimer 0
          complex of collagen trimers + 20
          extracellular matrix of synaptic cleft 1
          hyaline layer + 0
          interphotoreceptor matrix + 3
          interstitial matrix 17
          matrilin complex 0
          multimerin complex 0
          perisynaptic extracellular matrix + 7
          synapse-associated extracellular matrix + 8
          tenascin complex 0
          transforming growth factor beta complex 0
Path 2
Term Annotations click to browse term
  cellular_component 18523
    cellular anatomical entity 18191
      extracellular region 2122
        extracellular matrix 369
          collagen-containing extracellular matrix 223
            EMILIN complex 1
            anchoring collagen complex + 1
            basement membrane + 109
            collagen and cuticulin-based cuticle extracellular matrix + 0
            collagen type XXVI trimer 0
            collagen type XXVIII trimer 0
            complex of collagen trimers + 20
            extracellular matrix of synaptic cleft 1
            hyaline layer + 0
            interphotoreceptor matrix + 3
            interstitial matrix 17
            matrilin complex 0
            multimerin complex 0
            perisynaptic extracellular matrix + 7
            synapse-associated extracellular matrix + 8
            tenascin complex 0
            transforming growth factor beta complex 0
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.