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ONTOLOGY REPORT - ANNOTATIONS

Term:collagen-containing extracellular matrix
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Accession:GO:0062023 term browser browse the term
Definition:An extracellular matrix consisting mainly of proteins (especially collagen) and glycosaminoglycans (mostly as proteoglycans) that provides not only essential physical scaffolding for the cellular constituents but can also initiate crucial biochemical and biomechanical cues required for tissue morphogenesis, differentiation and homeostasis. The components are secreted by cells in the vicinity and form a sheet underlying or overlying cells such as endothelial and epithelial cells.
Synonyms:exact_synonym: collagen-containing ECM
 only_in_taxon: NCBITaxon:33208 ! Metazoa


show annotations for term's descendants           Sort by:
collagen-containing extracellular matrix term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ABI3BP ABI family member 3 binding protein is_active_in IBA GO_Central GO_REF:0000033 NCBI chr33:7,265,804...7,498,973
Ensembl chr33:7,266,685...7,418,106 		JBrowse link
G ADAMTS1 ADAM metallopeptidase with thrombospondin type 1 motif 1 ISO RGD PMID:15777654 RGD:9681749 NCBI chr31:22,169,821...22,178,879
Ensembl chr31:22,170,381...22,178,945 		JBrowse link
G ADAMTS10 ADAM metallopeptidase with thrombospondin type 1 motif 10 located_in ISO (PMID:21402694) UniProt PMID:21402694 NCBI chr20:53,090,819...53,110,533
Ensembl chr20:53,090,800...53,108,493 		JBrowse link
G ADAMTS15 ADAM metallopeptidase with thrombospondin type 1 motif 15 located_in IEA InterPro GO_REF:0000002 NCBI chr 5:4,457,879...4,480,210
Ensembl chr 5:4,457,959...4,479,875 		JBrowse link
G ADAMTS2 ADAM metallopeptidase with thrombospondin type 1 motif 2 located_in IEA InterPro GO_REF:0000002 NCBI chr11:2,279,983...2,504,630
Ensembl chr11:2,280,108...2,502,635 		JBrowse link
G ADAMTS5 ADAM metallopeptidase with thrombospondin type 1 motif 5 located_in IEA InterPro GO_REF:0000002 NCBI chr31:22,242,901...22,289,453
Ensembl chr31:22,248,092...22,289,802 		JBrowse link
G ADAMTS8 ADAM metallopeptidase with thrombospondin type 1 motif 8 located_in IEA InterPro GO_REF:0000002 NCBI chr 5:4,479,874...4,517,211
Ensembl chr 5:4,496,791...4,516,594 		JBrowse link
G AGRN agrin located_in IEA Ensembl GO_REF:0000107 NCBI chr 5:56,239,621...56,273,679
Ensembl chr 5:56,239,701...56,272,745 		JBrowse link
G AHSG alpha 2-HS glycoprotein ISO RGD PMID:7794128 RGD:1626075 NCBI chr34:19,221,034...19,228,866
Ensembl chr34:19,221,107...19,228,716 		JBrowse link
G AMELX amelogenin X-linked located_in
is_active_in		 IEA
IBA		 InterPro
GO_Central		 GO_REF:0000002 GO_REF:0000033 NCBI chr  X:7,822,513...7,828,692
Ensembl chr  X:7,822,859...7,830,351 		JBrowse link
G ANGPT1 angiopoietin 1 is_active_in IBA GO_Central GO_REF:0000033 NCBI chr13:8,068,920...8,312,090
Ensembl chr13:8,048,205...8,311,618 		JBrowse link
G ANGPT2 angiopoietin 2 is_active_in IBA GO_Central GO_REF:0000033 NCBI chr16:58,404,049...58,458,344
Ensembl chr16:58,405,259...58,457,701 		JBrowse link
G ANGPT4 angiopoietin 4 is_active_in IBA GO_Central GO_REF:0000033 NCBI chr24:20,021,625...20,068,805
Ensembl chr24:20,022,322...20,064,023 		JBrowse link
G ANGPTL1 angiopoietin like 1 is_active_in IBA GO_Central GO_REF:0000033 NCBI chr 7:20,919,192...20,945,140
Ensembl chr 7:20,919,214...20,940,792 		JBrowse link
G ANGPTL2 angiopoietin like 2 is_active_in IBA GO_Central GO_REF:0000033 NCBI chr 9:56,184,298...56,220,309
Ensembl chr 9:56,198,423...56,218,751 		JBrowse link
G ANGPTL3 angiopoietin like 3 is_active_in IBA GO_Central GO_REF:0000033 NCBI chr 5:47,524,390...47,532,931
Ensembl chr 5:47,525,365...47,532,899 		JBrowse link
G ANGPTL4 angiopoietin like 4 is_active_in IBA GO_Central GO_REF:0000033 NCBI chr20:52,942,090...52,948,126
Ensembl chr20:52,942,259...52,947,475 		JBrowse link
G ANGPTL5 angiopoietin like 5 is_active_in IBA GO_Central GO_REF:0000033 NCBI chr 5:29,543,987...29,682,998
Ensembl chr 5:29,544,234...29,679,594 		JBrowse link
G ANGPTL6 angiopoietin like 6 is_active_in IBA GO_Central GO_REF:0000033 NCBI chr20:50,953,029...50,961,598
Ensembl chr20:50,953,498...50,961,576 		JBrowse link
G ANGPTL7 angiopoietin like 7 is_active_in IBA GO_Central GO_REF:0000033 NCBI chr 2:84,876,881...84,883,582
Ensembl chr 2:84,877,682...84,883,160 		JBrowse link
G ANO2 anoctamin 2 located_in IEA UniProt GO_REF:0000104 NCBI chr27:38,976,761...39,320,764
Ensembl chr27:38,833,837...39,320,142 		JBrowse link
G B9D2 B9 domain containing 2 ISO RGD PMID:24224514 RGD:11073670 NCBI chr 1:112,621,832...112,627,726
Ensembl chr 1:112,621,633...112,643,885 		JBrowse link
G BGLAP bone gamma-carboxyglutamate protein located_in IDA (PMID:8101026), (PMID:8218200) CAFA PMID:8101026 PMID:8218200 NCBI chr 7:41,630,092...41,630,976
Ensembl chr 7:41,630,098...41,665,791 		JBrowse link
G BMP7 bone morphogenetic protein 7 ISO RGD PMID:9626398 RGD:2289041 NCBI chr24:42,203,183...42,294,105
Ensembl chr24:42,204,823...42,294,653 		JBrowse link
G CALR calreticulin ISO RGD PMID:12782144 RGD:2326184 NCBI chr20:49,251,390...49,255,291
Ensembl chr20:49,251,777...49,255,245 		JBrowse link
G CCBE1 collagen and calcium binding EGF domains 1 is_active_in IBA GO_Central GO_REF:0000033 NCBI chr 1:16,597,389...16,819,888
Ensembl chr 1:16,597,334...16,819,894 		JBrowse link
G CCN3 cellular communication network factor 3 ISO RGD PMID:19286457 RGD:2306292 NCBI chr13:18,507,586...18,515,755
Ensembl chr13:18,507,580...18,514,619 		JBrowse link
G CHADL chondroadherin like located_in ISO (PMID:25451920) UniProt PMID:25451920 NCBI chr10:23,992,848...24,006,492
Ensembl chr10:23,953,912...24,003,162 		JBrowse link
G CILP cartilage intermediate layer protein located_in
is_active_in		 IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr30:29,573,072...29,587,601
Ensembl chr30:29,573,184...29,650,883 		JBrowse link
G CLU clusterin located_in ISS UniProt GO_REF:0000024 NCBI chr25:29,982,811...29,999,565
Ensembl chr25:29,982,811...29,999,563 		JBrowse link
G CMSS1 cms1 ribosomal small subunit homolog is_active_in IBA GO_Central GO_REF:0000033 NCBI chr33:6,442,721...6,818,394
Ensembl chr33:6,443,035...6,818,171 		JBrowse link
G COCH cochlin located_in
is_active_in		 IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr 8:10,215,101...10,230,017
Ensembl chr 8:10,214,536...10,233,550 		JBrowse link
G COL10A1 collagen type X alpha 1 chain located_in
is_active_in		 ISO
IBA		 (PMID:17876790) RGD
ComplexPortal
GO_Central		 PMID:7649371 PMID:17876790 GO_REF:0000033 RGD:1298775 NCBI chr12:71,803,372...71,810,049
Ensembl chr12:71,798,692...71,809,399 		JBrowse link
G COL11A1 collagen type XI alpha 1 chain is_active_in ISO
IBA		 RGD
GO_Central		 PMID:17062562 GO_REF:0000033 RGD:1600882 NCBI chr 6:47,425,387...47,622,189
Ensembl chr 6:47,425,307...47,621,012 		JBrowse link
G COL11A2 collagen type XI alpha 2 chain is_active_in IBA GO_Central GO_REF:0000033 NCBI chr12:2,626,829...2,656,680
Ensembl chr12:2,627,828...2,655,814 		JBrowse link
G COL17A1 collagen type XVII alpha 1 chain is_active_in IBA GO_Central GO_REF:0000033 NCBI chr28:16,349,926...16,402,213
Ensembl chr28:16,350,564...16,402,056 		JBrowse link
G COL18A1 collagen type XVIII alpha 1 chain is_active_in IBA GO_Central GO_REF:0000033 NCBI chr31:38,915,872...38,957,484 JBrowse link
G COL19A1 collagen type XIX alpha 1 chain is_active_in IBA GO_Central GO_REF:0000033 NCBI chr12:32,452,653...32,760,310
Ensembl chr12:32,449,744...32,755,226 		JBrowse link
G COL1A1 collagen type I alpha 1 chain located_in
is_active_in		 IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr 9:26,183,852...26,199,927
Ensembl chr 9:26,183,852...26,199,927 		JBrowse link
G COL1A2 collagen type I alpha 2 chain located_in
is_active_in		 IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr14:19,883,731...19,919,527
Ensembl chr14:19,883,868...19,919,527 		JBrowse link
G COL21A1 collagen type XXI alpha 1 chain is_active_in IBA GO_Central GO_REF:0000033 NCBI chr12:23,359,350...23,587,689
Ensembl chr12:23,360,372...23,529,713 		JBrowse link
G COL23A1 collagen type XXIII alpha 1 chain is_active_in IBA GO_Central GO_REF:0000033 NCBI chr11:2,997,504...3,319,948
Ensembl chr11:2,997,021...3,318,867 		JBrowse link
G COL27A1 collagen type XXVII alpha 1 chain is_active_in IBA GO_Central GO_REF:0000033 NCBI chr11:68,413,101...68,548,408
Ensembl chr11:68,420,263...68,546,947 		JBrowse link
G COL28A1 collagen type XXVIII alpha 1 chain is_active_in IBA GO_Central GO_REF:0000033 NCBI chr14:22,991,469...23,153,333
Ensembl chr14:22,993,286...23,153,305 		JBrowse link
G COL2A1 collagen type II alpha 1 chain is_active_in ISO
IBA		 RGD
GO_Central		 PMID:7649371 GO_REF:0000033 RGD:1298775 NCBI chr27:6,756,994...6,787,733
Ensembl chr27:6,756,994...6,787,733 		JBrowse link
G COL3A1 collagen type III alpha 1 chain is_active_in
located_in		 ISO
IBA
IEA		 RGD
GO_Central
Ensembl		 PMID:20610530 GO_REF:0000033 GO_REF:0000107 RGD:7257557 NCBI chr36:30,488,250...30,526,367
Ensembl chr36:30,488,488...30,536,765 		JBrowse link
G COL4A1 collagen type IV alpha 1 chain is_active_in IBA GO_Central GO_REF:0000033 NCBI chr22:58,511,210...58,651,949
Ensembl chr22:58,512,212...58,588,666 		JBrowse link
G COL4A2 collagen type IV alpha 2 chain is_active_in IBA GO_Central GO_REF:0000033 NCBI chr22:58,656,579...58,820,560
Ensembl chr22:58,697,175...58,773,297 		JBrowse link
G COL4A3 collagen type IV alpha 3 chain is_active_in IBA GO_Central GO_REF:0000033 NCBI chr25:39,975,547...40,106,833
Ensembl chr25:39,975,586...40,104,782 		JBrowse link
G COL4A4 collagen type IV alpha 4 chain is_active_in IBA GO_Central GO_REF:0000033 NCBI chr25:39,849,680...39,976,035
Ensembl chr25:39,854,388...39,976,189 		JBrowse link
G COL4A5 collagen type IV alpha 5 chain is_active_in IBA GO_Central GO_REF:0000033 NCBI chr  X:81,982,119...82,248,428
Ensembl chr  X:81,982,275...82,247,679 		JBrowse link
G COL4A6 collagen type IV alpha 6 chain is_active_in IBA GO_Central GO_REF:0000033 NCBI chr  X:81,690,047...81,981,005
Ensembl chr  X:81,691,417...81,980,703 		JBrowse link
G COL5A1 collagen type V alpha 1 chain located_in
is_active_in		 IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr 9:50,706,852...50,856,691
Ensembl chr 9:50,770,277...50,854,728 		JBrowse link
G COL5A2 collagen type V alpha 2 chain is_active_in IBA GO_Central GO_REF:0000033 NCBI chr36:30,538,863...30,677,450
Ensembl chr36:30,540,229...30,691,564 		JBrowse link
G COL5A3 collagen type V alpha 3 chain is_active_in ISO
IBA		 RGD
GO_Central		 PMID:15383532 GO_REF:0000033 RGD:5683638 NCBI chr20:51,037,604...51,075,220
Ensembl chr20:51,037,621...51,074,993 		JBrowse link
G COL6A2 collagen type VI alpha 2 chain is_active_in IBA GO_Central GO_REF:0000033 NCBI chr31:39,433,174...39,448,051 JBrowse link
G COL6A5 collagen type VI alpha 5 chain is_active_in IBA GO_Central GO_REF:0000033 NCBI chr23:27,596,450...27,726,246
Ensembl chr23:27,596,395...27,721,265 		JBrowse link
G COL6A6 collagen type VI alpha 6 chain is_active_in IBA GO_Central GO_REF:0000033 NCBI chr23:27,759,707...27,900,971
Ensembl chr23:27,759,103...27,900,154 		JBrowse link
G COL8A2 collagen type VIII alpha 2 chain is_active_in IBA GO_Central GO_REF:0000033 NCBI chr15:6,095,872...6,115,538
Ensembl chr15:6,095,728...6,115,538 		JBrowse link
G COL9A1 collagen type IX alpha 1 chain is_active_in IBA GO_Central GO_REF:0000033 NCBI chr12:32,763,782...32,847,456
Ensembl chr12:32,764,496...32,847,574 		JBrowse link
G COL9A2 collagen type IX alpha 2 chain is_active_in IBA GO_Central GO_REF:0000033 NCBI chr15:2,615,428...2,661,552
Ensembl chr15:2,646,982...2,661,552 		JBrowse link
G COMP cartilage oligomeric matrix protein is_active_in ISO
IBA		 RGD
GO_Central		 PMID:16778685 GO_REF:0000033 RGD:1600712 NCBI chr20:44,306,813...44,314,575
Ensembl chr20:44,306,859...44,314,625 		JBrowse link
G DMBT1 deleted in malignant brain tumors 1 ISO RGD PMID:11121438 RGD:1599784 NCBI chr28:32,198,250...32,286,517
Ensembl chr28:32,219,448...32,286,532 		JBrowse link
G DSPP dentin sialophosphoprotein ISO RGD PMID:16776771 RGD:1599799 NCBI chr32:11,017,440...11,022,780 JBrowse link
G ECM1 extracellular matrix protein 1 located_in
is_active_in		 IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr17:59,696,125...59,701,990
Ensembl chr17:59,696,477...59,701,744 		JBrowse link
G ELN elastin located_in IEA InterPro GO_REF:0000002 NCBI chr 6:6,299,524...6,331,425
Ensembl chr 6:6,300,727...6,331,325 		JBrowse link
G EMILIN1 elastin microfibril interfacer 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr17:21,071,502...21,078,888
Ensembl chr17:21,071,580...21,078,889 		JBrowse link
G F2 coagulation factor II, thrombin is_active_in ISO
IBA		 RGD
GO_Central		 PMID:21191574 GO_REF:0000033 RGD:7387308 NCBI chr18:42,782,744...42,799,531
Ensembl chr18:42,782,751...42,799,459 		JBrowse link
G F3 coagulation factor III, tissue factor located_in IEA Ensembl GO_REF:0000107 NCBI chr 6:54,709,581...54,720,603
Ensembl chr 6:54,708,471...54,720,607 		JBrowse link
G FBLN5 fibulin 5 located_in IEA Ensembl GO_REF:0000107 NCBI chr 8:1,162,203...1,231,809
Ensembl chr 8:1,162,923...1,231,719 		JBrowse link
G FBN1 fibrillin 1 located_in ISO
IEA		 RGD
Ensembl		 PMID:15849235 GO_REF:0000107 RGD:1601147 NCBI chr30:14,640,973...14,864,151
Ensembl chr30:14,640,973...14,864,151 		JBrowse link
G FCN2 ficolin 2 is_active_in IBA GO_Central GO_REF:0000033 NCBI chr 9:50,868,942...50,876,001
Ensembl chr 9:50,868,973...50,875,792 		JBrowse link
G FGB fibrinogen beta chain is_active_in IBA GO_Central GO_REF:0000033 NCBI chr15:52,220,690...52,228,526
Ensembl chr15:52,220,611...52,228,250 		JBrowse link
G FGF10 fibroblast growth factor 10 located_in IEA Ensembl GO_REF:0000107 NCBI chr 4:65,851,130...65,930,944
Ensembl chr 4:65,851,069...65,928,192 		JBrowse link
G FGFR2 fibroblast growth factor receptor 2 located_in IEA Ensembl GO_REF:0000107 NCBI chr28:31,303,882...31,411,015
Ensembl chr28:31,303,894...31,411,621 		JBrowse link
G FGL1 fibrinogen like 1 is_active_in IBA GO_Central GO_REF:0000033 NCBI chr16:41,161,314...41,191,282
Ensembl chr16:41,161,394...41,179,791 		JBrowse link
G FGL2 fibrinogen like 2 is_active_in IBA GO_Central GO_REF:0000033 NCBI chr18:17,328,794...17,335,429
Ensembl chr18:17,331,780...17,335,401 		JBrowse link
G FIBCD1 fibrinogen C domain containing 1 is_active_in IBA GO_Central GO_REF:0000033 NCBI chr 9:53,073,859...53,106,266
Ensembl chr 9:53,073,027...53,103,937 		JBrowse link
G FMOD fibromodulin ISO RGD PMID:12941075 RGD:2315082 NCBI chr38:102,106...112,267
Ensembl chr38:103,230...112,154 		JBrowse link
G FN1 fibronectin 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr37:22,456,854...22,522,410
Ensembl chr37:22,420,428...22,523,123 		JBrowse link
G FRAS1 Fraser extracellular matrix complex subunit 1 is_active_in IBA GO_Central GO_REF:0000033 NCBI chr32:2,558,442...2,993,199
Ensembl chr32:2,558,354...2,991,063 		JBrowse link
G FREM1 FRAS1 related extracellular matrix 1 is_active_in IBA GO_Central GO_REF:0000033 NCBI chr11:35,174,390...35,338,983
Ensembl chr11:35,176,934...35,310,335 		JBrowse link
G FREM2 FRAS1 related extracellular matrix 2 is_active_in IBA GO_Central GO_REF:0000033 NCBI chr25:2,097,264...2,264,049
Ensembl chr25:2,102,849...2,264,456 		JBrowse link
G GPC1 glypican 1 located_in IEA InterPro GO_REF:0000002 NCBI chr25:50,484,554...50,492,940
Ensembl chr25:50,482,071...50,515,877 		JBrowse link
G GPC2 glypican 2 located_in IEA InterPro GO_REF:0000002 NCBI chr 6:9,354,181...9,361,361
Ensembl chr 6:9,354,535...9,361,375 		JBrowse link
G GPC3 glypican 3 located_in IEA InterPro GO_REF:0000002 NCBI chr  X:104,313,426...104,751,215
Ensembl chr  X:104,313,591...104,751,756 		JBrowse link
G GPC4 glypican 4 located_in IEA InterPro GO_REF:0000002 NCBI chr  X:104,098,316...104,215,883
Ensembl chr  X:104,100,571...104,216,103 		JBrowse link
G GPC5 glypican 5 located_in IEA InterPro GO_REF:0000002 NCBI chr22:42,526,426...43,873,992
Ensembl chr22:42,526,054...43,870,405 		JBrowse link
G GPC6 glypican 6 located_in IEA InterPro GO_REF:0000002 NCBI chr22:44,154,690...45,237,398
Ensembl chr22:44,154,944...45,233,549 		JBrowse link
G HSP90AA1 heat shock protein 90 alpha family class A member 1 ISO RGD PMID:15497505 RGD:2316936 NCBI chr 8:70,091,203...70,096,107
Ensembl chr 8:70,092,217...70,095,243 		JBrowse link
G HSPG2 heparan sulfate proteoglycan 2 ISO RGD PMID:15928048 RGD:1624263 NCBI chr 2:77,263,534...77,366,558
Ensembl chr 2:77,301,858...77,367,724 		JBrowse link
G HTRA1 HtrA serine peptidase 1 is_active_in ISO
IBA		 dentin matrix RGD
GO_Central		 PMID:22595117 GO_REF:0000033 RGD:7394756 NCBI chr28:32,133,779...32,157,835
Ensembl chr28:32,132,547...32,157,409 		JBrowse link
G IGFBP7 insulin like growth factor binding protein 7 is_active_in IBA GO_Central GO_REF:0000033 NCBI chr13:49,138,406...49,207,235
Ensembl chr13:49,138,402...49,207,394 		JBrowse link
G IGFBPL1 insulin like growth factor binding protein like 1 is_active_in IBA GO_Central GO_REF:0000033 NCBI chr11:54,586,337...54,596,218 JBrowse link
G LAMB1 laminin subunit beta 1 ISO RGD PMID:15928048 RGD:1624263 NCBI chr18:12,634,640...12,700,311
Ensembl chr18:12,630,554...12,700,308 		JBrowse link
G LAMC1 laminin subunit gamma 1 ISO RGD PMID:15928048 RGD:1624263 NCBI chr 7:16,406,421...16,528,372
Ensembl chr 7:16,404,495...16,526,000 		JBrowse link
G LOC100688853 phospholipid scramblase 1-like located_in IEA Ensembl GO_REF:0000107 NCBI chr23:41,591,425...41,625,918
Ensembl chr23:41,599,843...41,669,112 		JBrowse link
G LOC119868741 amelogenin, X isoform-like located_in
is_active_in		 IEA
IBA		 InterPro
GO_Central		 GO_REF:0000002 GO_REF:0000033
G LOC119877844 leucine-rich repeat-containing protein 15 located_in IEA Ensembl GO_REF:0000107
G LOC607055 angiopoietin-related protein 5-like is_active_in IBA GO_Central GO_REF:0000033 NCBI chr10:17,040,257...17,042,108 JBrowse link
G LOC610614 collagen alpha-4(VI) chain-like is_active_in IBA GO_Central GO_REF:0000033 NCBI chr23:27,419,042...27,530,981 JBrowse link
G LOX lysyl oxidase is_active_in IBA GO_Central GO_REF:0000033 NCBI chr11:12,023,645...12,040,015
Ensembl chr11:12,027,250...12,039,819 		JBrowse link
G LOXL1 lysyl oxidase like 1 is_active_in IBA GO_Central GO_REF:0000033 NCBI chr30:37,191,201...37,204,163
Ensembl chr30:37,183,128...37,204,058 		JBrowse link
G LOXL2 lysyl oxidase like 2 is_active_in IBA GO_Central GO_REF:0000033 NCBI chr25:34,095,858...34,186,775
Ensembl chr25:34,126,335...34,185,969 		JBrowse link
G LOXL3 lysyl oxidase like 3 is_active_in IBA GO_Central GO_REF:0000033 NCBI chr17:48,590,996...48,610,264
Ensembl chr17:48,591,768...48,610,392 		JBrowse link
G LOXL4 lysyl oxidase like 4 is_active_in IBA GO_Central GO_REF:0000033 NCBI chr28:11,399,465...11,419,562
Ensembl chr28:11,400,446...11,419,559 		JBrowse link
G LRRC15 leucine rich repeat containing 15 located_in IEA Ensembl GO_REF:0000107 NCBI chr33:31,332,502...31,345,895
Ensembl chr33:31,332,496...31,342,583 		JBrowse link
G LTBP1 latent transforming growth factor beta binding protein 1 located_in ISO
IEA		 RGD
Ensembl		 PMID:9766531 GO_REF:0000107 RGD:10412061 NCBI chr17:26,129,528...26,521,782
Ensembl chr17:26,130,781...26,521,779 		JBrowse link
G LTBP3 latent transforming growth factor beta binding protein 3 located_in IEA Ensembl GO_REF:0000107 NCBI chr18:51,653,783...51,667,793
Ensembl chr18:51,659,098...51,667,433 		JBrowse link
G LTBP4 latent transforming growth factor beta binding protein 4 located_in IEA Ensembl GO_REF:0000107 NCBI chr 1:113,124,109...113,152,283
Ensembl chr 1:113,124,109...113,150,442 		JBrowse link
G MARCO macrophage receptor with collagenous structure is_active_in IBA GO_Central GO_REF:0000033 NCBI chr19:30,996,209...31,034,520
Ensembl chr19:30,996,347...31,034,487 		JBrowse link
G MATN1 matrilin 1 is_active_in IBA GO_Central GO_REF:0000033 NCBI chr 2:70,225,642...70,234,972 JBrowse link
G MATN2 matrilin 2 located_in
is_active_in		 ISO
IBA		 (PMID:10224097) ComplexPortal
GO_Central		 PMID:10224097 GO_REF:0000033 NCBI chr13:149,108...296,005
Ensembl chr13:149,095...295,994 		JBrowse link
G MATN3 matrilin 3 located_in
is_active_in		 IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr17:15,037,175...15,054,451
Ensembl chr17:15,037,995...15,054,436 		JBrowse link
G MATN4 matrilin 4 located_in
is_active_in		 ISO
IBA		 (PMID:11279097) ComplexPortal
GO_Central		 PMID:11279097 GO_REF:0000033 NCBI chr24:32,601,175...32,614,109
Ensembl chr24:32,599,508...32,613,872 		JBrowse link
G MFAP4 microfibril associated protein 4 located_in
is_active_in		 IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr 5:40,828,548...40,831,757
Ensembl chr 5:40,828,282...40,831,495 		JBrowse link
G MGP matrix Gla protein located_in ISO
IEA		 RGD
InterPro		 PMID:11716499 GO_REF:0000002 RGD:2293597 NCBI chr27:31,735,301...31,738,673
Ensembl chr27:31,734,660...31,738,673 		JBrowse link
G MMRN1 multimerin 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr32:13,111,043...13,184,681
Ensembl chr32:13,110,969...13,184,649 		JBrowse link
G MMRN2 multimerin 2 located_in IEA Ensembl GO_REF:0000107 NCBI chr 4:34,577,072...34,604,521
Ensembl chr 4:34,589,597...34,605,576 		JBrowse link
G MYOC myocilin located_in ISS
IEA		 UniProt
Ensembl		 GO_REF:0000024 GO_REF:0000107 NCBI chr 7:27,335,314...27,346,821
Ensembl chr 7:27,335,314...27,346,820 		JBrowse link
G NDP norrin cystine knot growth factor NDP located_in ISO (PMID:15035989) BHF-UCL PMID:15035989 NCBI chr  X:37,949,560...37,975,573
Ensembl chr  X:37,950,489...37,975,346 		JBrowse link
G NPNT nephronectin located_in IEA Ensembl GO_REF:0000107 NCBI chr32:26,706,147...26,781,792
Ensembl chr32:26,705,476...26,781,275 		JBrowse link
G OTOL1 otolin 1 is_active_in IBA GO_Central GO_REF:0000033 NCBI chr34:27,405,456...27,454,726
Ensembl chr34:27,413,694...27,455,023 		JBrowse link
G PCSK6 proprotein convertase subtilisin/kexin type 6 located_in
is_active_in		 IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr 3:39,582,804...39,768,838
Ensembl chr 3:39,582,819...39,767,929 		JBrowse link
G PLAT plasminogen activator, tissue type NOT|located_in ISO (PMID:1632457) BHF-UCL PMID:1632457 NCBI chr16:23,469,590...23,496,013 JBrowse link
G PLOD1 procollagen-lysine,2-oxoglutarate 5-dioxygenase 1 is_active_in IBA GO_Central GO_REF:0000033 NCBI chr 2:84,320,529...84,343,562
Ensembl chr 2:84,320,529...84,343,562 		JBrowse link
G PLOD2 procollagen-lysine,2-oxoglutarate 5-dioxygenase 2 is_active_in IBA GO_Central GO_REF:0000033 NCBI chr23:41,290,183...41,382,917
Ensembl chr23:41,290,567...41,382,807 		JBrowse link
G PLOD3 procollagen-lysine,2-oxoglutarate 5-dioxygenase 3 located_in
is_active_in		 IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr 6:8,664,135...8,671,637
Ensembl chr 6:8,664,358...8,671,620 		JBrowse link
G PLSCR1 phospholipid scramblase 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr23:41,639,938...41,668,972
Ensembl chr23:41,599,843...41,669,112 		JBrowse link
G PODNL1 podocan like 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr20:48,543,572...48,548,689
Ensembl chr20:48,526,786...48,548,689 		JBrowse link
G POSTN periostin located_in IEA Ensembl GO_REF:0000107 NCBI chr25:3,167,319...3,208,970
Ensembl chr25:3,167,359...3,208,411 		JBrowse link
G PRG4 proteoglycan 4 is_active_in IBA GO_Central GO_REF:0000033 NCBI chr 7:19,360,034...19,377,005
Ensembl chr 7:19,364,609...19,376,999 		JBrowse link
G PXDN peroxidasin located_in IEA Ensembl GO_REF:0000107 NCBI chr17:834,625...891,551
Ensembl chr17:836,434...875,117 		JBrowse link
G RARRES2 retinoic acid receptor responder 2 located_in IEA Ensembl GO_REF:0000107 NCBI chr16:14,671,345...14,675,000
Ensembl chr16:14,671,130...14,674,926 		JBrowse link
G RPSA ribosomal protein SA ISO RGD PMID:11553521 RGD:2299067 NCBI chr23:9,070,953...9,077,058
Ensembl chr23:9,070,953...9,077,057 		JBrowse link
G SCARA3 scavenger receptor class A member 3 is_active_in IBA GO_Central GO_REF:0000033 NCBI chr25:29,891,099...29,966,846
Ensembl chr25:29,917,335...29,968,076 		JBrowse link
G SEBOX SEBOX homeobox located_in
is_active_in		 IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr 9:42,614,770...42,616,412
Ensembl chr 9:42,614,941...42,630,864 		JBrowse link
G SERPINE1 serpin family E member 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr 6:8,719,547...8,727,160
Ensembl chr 6:8,720,825...8,726,301 		JBrowse link
G SERPINE2 serpin family E member 2 located_in ISO (PMID:3279057) BHF-UCL PMID:3279057 NCBI chr37:29,699,551...29,750,151
Ensembl chr37:29,700,024...29,724,228 		JBrowse link
G SFRP1 secreted frizzled related protein 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr16:24,262,451...24,306,162
Ensembl chr16:24,261,946...24,302,964 		JBrowse link
G SFRP2 secreted frizzled related protein 2 located_in IDA (PMID:14709558) BHF-UCL PMID:14709558 NCBI chr15:51,541,197...51,548,765
Ensembl chr15:51,540,500...51,548,765 		JBrowse link
G SMOC2 SPARC related modular calcium binding 2 located_in IEA InterPro GO_REF:0000002 NCBI chr 1:55,826,354...55,986,053
Ensembl chr 1:55,825,666...55,986,052 		JBrowse link
G SNORC secondary ossification center associated regulator of chondrocyte maturation located_in IEA Ensembl GO_REF:0000107 NCBI chr25:44,453,804...44,472,159
Ensembl chr25:44,466,852...44,470,935 		JBrowse link
G SOD3 superoxide dismutase 3 located_in ISO
IEA		 RGD
Ensembl		 PMID:16372329 GO_REF:0000107 RGD:1581086 NCBI chr 3:85,382,698...85,387,144
Ensembl chr 3:85,382,484...85,387,455 		JBrowse link
G SPARCL1 SPARC like 1 located_in IEA InterPro GO_REF:0000002 NCBI chr32:10,900,072...10,944,392
Ensembl chr32:10,900,283...10,944,449 		JBrowse link
G SSC5D scavenger receptor cysteine rich family member with 5 domains located_in IEA Ensembl GO_REF:0000107 NCBI chr 1:102,195,426...102,222,352
Ensembl chr 1:102,196,890...102,221,444 		JBrowse link
G TGFB2 transforming growth factor beta 2 located_in IEA Ensembl GO_REF:0000107 NCBI chr38:13,430,832...13,511,655
Ensembl chr38:13,429,148...13,510,242 		JBrowse link
G TGFB3 transforming growth factor beta 3 located_in IEA Ensembl GO_REF:0000107 NCBI chr 8:48,920,874...48,946,037
Ensembl chr 8:48,923,423...48,945,816 		JBrowse link
G THBS1 thrombospondin 1 is_active_in IBA GO_Central GO_REF:0000033 NCBI chr30:6,770,212...6,786,875
Ensembl chr30:6,769,470...6,784,915 		JBrowse link
G THBS2 thrombospondin 2 is_active_in IBA GO_Central GO_REF:0000033 NCBI chr 1:56,402,519...56,429,975
Ensembl chr 1:56,402,524...56,451,892 		JBrowse link
G THBS3 thrombospondin 3 is_active_in IBA GO_Central GO_REF:0000033 NCBI chr 7:42,327,899...42,338,177
Ensembl chr 7:42,328,592...42,338,171 		JBrowse link
G THBS4 thrombospondin 4 located_in
is_active_in		 IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr 3:26,945,001...26,982,224
Ensembl chr 3:26,945,081...26,988,597 		JBrowse link
G TNC tenascin C located_in IEA Ensembl GO_REF:0000107 NCBI chr11:69,077,532...69,169,673
Ensembl chr11:69,077,535...69,170,281 		JBrowse link
G TNN tenascin N located_in IEA Ensembl GO_REF:0000107 NCBI chr 7:24,246,481...24,342,686
Ensembl chr 7:24,230,930...24,308,520 		JBrowse link
G TNR tenascin R located_in
is_active_in		 ISO
IBA		 (PMID:8244531) ComplexPortal
GO_Central		 PMID:8244531 GO_REF:0000033 NCBI chr 7:23,721,227...24,125,183
Ensembl chr 7:24,019,095...24,122,530 		JBrowse link
G VCAN versican ISO RGD PMID:12586779 RGD:1299255 NCBI chr 3:24,127,293...24,238,859
Ensembl chr 3:24,119,181...24,239,192 		JBrowse link
G VTN vitronectin is_active_in
located_in		 ISO
IBA
IEA		 RGD
GO_Central
Ensembl		 PMID:2426279 GO_REF:0000033 GO_REF:0000107 RGD:10003088 NCBI chr 9:42,617,860...42,620,825
Ensembl chr 9:42,614,941...42,630,864 		JBrowse link
G VWA1 von Willebrand factor A domain containing 1 is_active_in IBA GO_Central GO_REF:0000033 NCBI chr 5:56,578,256...56,583,552
Ensembl chr 5:56,578,297...56,582,502 		JBrowse link
G VWF von Willebrand factor located_in ISO
IEA
ISS		 RGD
Ensembl
UniProt		 PMID:14762664 GO_REF:0000024 GO_REF:0000104 GO_REF:0000107 RGD:1599021 NCBI chr27:38,834,812...38,972,614
Ensembl chr27:38,833,837...39,320,142 		JBrowse link
G WNT2 Wnt family member 2 located_in IEA Ensembl GO_REF:0000107 NCBI chr14:56,123,735...56,172,113
Ensembl chr14:56,129,248...56,172,069 		JBrowse link
G ZG16 zymogen granule protein 16 located_in IEA Ensembl GO_REF:0000107 NCBI chr 6:17,840,430...17,842,008
Ensembl chr 6:17,839,553...17,842,006 		JBrowse link
G ZP1 zona pellucida glycoprotein 1 located_in ISO (PMID:11906903) UniProt PMID:11906903 NCBI chr18:55,405,991...55,416,033 JBrowse link
G ZP2 zona pellucida glycoprotein 2 located_in
is_active_in		 ISS
IBA
IEA		 UniProt
GO_Central
Ensembl		 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr 6:24,230,202...24,242,441
Ensembl chr 6:24,230,201...24,242,451 		JBrowse link
G ZP3 zona pellucida glycoprotein 3 located_in ISS
IEA		 UniProt
Ensembl		 GO_REF:0000024 GO_REF:0000107 NCBI chr 6:7,586,212...7,594,610
Ensembl chr 6:7,585,970...7,594,610 		JBrowse link
G ZP4 zona pellucida glycoprotein 4 is_active_in IBA GO_Central GO_REF:0000033 NCBI chr 4:2,324,657...2,332,357
Ensembl chr 4:2,324,226...2,331,470 		JBrowse link
basement membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACAN aggrecan located_in IEA Ensembl GO_REF:0000107 NCBI chr 3:51,995,100...52,031,812
Ensembl chr 3:51,969,779...52,031,544 		JBrowse link
G ACHE acetylcholinesterase located_in IEA Ensembl GO_REF:0000107 NCBI chr 6:8,874,747...8,879,926
Ensembl chr 6:8,873,584...8,879,702 		JBrowse link
G ACTA2 actin alpha 2, smooth muscle ISO MMO:0000538 RGD PMID:30476341 RGD:151893502 NCBI chr26:38,700,434...38,714,915
Ensembl chr26:38,700,480...38,711,753 		JBrowse link
G ADAMTS1 ADAM metallopeptidase with thrombospondin type 1 motif 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr31:22,169,821...22,178,879
Ensembl chr31:22,170,381...22,178,945 		JBrowse link
G AGRN agrin located_in ISO
IEA		 RGD
Ensembl
UniProt		 PMID:11470186 PMID:15711988 GO_REF:0000107 GO_REF:0000117 RGD:11556219 RGD:1578369 (All species) (All species) NCBI chr 5:56,239,621...56,273,679
Ensembl chr 5:56,239,701...56,272,745 		JBrowse link
G ALB albumin ISO RGD PMID:1723977 RGD:1625719 NCBI chr13:62,133,747...62,169,349
Ensembl chr13:62,053,814...62,294,709 		JBrowse link
G AMELX amelogenin X-linked located_in ISO (PMID:18757743) MGI PMID:18757743 NCBI chr  X:7,822,513...7,828,692
Ensembl chr  X:7,822,859...7,830,351 		JBrowse link
G AMTN amelotin located_in
is_active_in		 IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr13:59,855,278...59,867,133
Ensembl chr13:59,852,490...59,867,516 		JBrowse link
G ANXA2 annexin A2 located_in IEA UniProt GO_REF:0000043 GO_REF:0000044 NCBI chr30:25,176,845...25,210,244
Ensembl chr30:25,115,842...25,218,281 		JBrowse link
G CASK calcium/calmodulin dependent serine protein kinase part_of
located_in		 ISO
IEA		 (PMID:18664494) CACAO
Ensembl		 PMID:18664494 GO_REF:0000107 NCBI chr  X:35,939,117...36,296,438
Ensembl chr  X:35,940,647...36,297,014 		JBrowse link
G CCDC80 coiled-coil domain containing 80 located_in
is_active_in		 IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr33:17,105,086...17,141,380
Ensembl chr33:17,105,086...17,139,896 		JBrowse link
G CD151 CD151 molecule part_of
located_in		 ISO
IEA		 (PMID:23302890) CACAO
Ensembl		 PMID:23302890 GO_REF:0000107 NCBI chr18:45,195,875...45,200,066
Ensembl chr18:45,196,237...45,200,081 		JBrowse link
G CNTNAP3 contactin associated protein family member 3 located_in IEA UniProt GO_REF:0000117 NCBI chr 1:94,533,087...94,722,824 JBrowse link
G CNTNAP4 contactin associated protein family member 4 located_in IEA UniProt GO_REF:0000117 NCBI chr 5:74,507,728...74,748,798
Ensembl chr 5:74,509,885...74,748,767 		JBrowse link
G COL13A1 collagen type XIII alpha 1 chain is_active_in IBA GO_Central GO_REF:0000033 NCBI chr 4:20,838,163...20,987,412
Ensembl chr 4:20,837,650...20,986,962 		JBrowse link
G COL15A1 collagen type XV alpha 1 chain located_in
is_active_in		 IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr11:56,026,209...56,131,698
Ensembl chr11:56,025,269...56,130,861 		JBrowse link
G COL16A1 collagen type XVI alpha 1 chain is_active_in IBA GO_Central GO_REF:0000033 NCBI chr 2:69,410,283...69,459,382
Ensembl chr 2:69,410,155...69,459,335 		JBrowse link
G COL17A1 collagen type XVII alpha 1 chain located_in IEA UniProt GO_REF:0000043 GO_REF:0000044 NCBI chr28:16,349,926...16,402,213
Ensembl chr28:16,350,564...16,402,056 		JBrowse link
G COL18A1 collagen type XVIII alpha 1 chain located_in ISO (PMID:12588956), (PMID:15254016), (PMID:18757743), (PMID:19651211), (PMID:7568013) MGI PMID:7568013 PMID:12588956 PMID:15254016 PMID:18757743 PMID:19651211 NCBI chr31:38,915,872...38,957,484 JBrowse link
G COL24A1 collagen type XXIV alpha 1 chain is_active_in IBA GO_Central GO_REF:0000033 NCBI chr 6:61,931,272...62,318,091
Ensembl chr 6:61,931,900...62,316,899 		JBrowse link
G COL28A1 collagen type XXVIII alpha 1 chain located_in IEA Ensembl GO_REF:0000107 NCBI chr14:22,991,469...23,153,333
Ensembl chr14:22,993,286...23,153,305 		JBrowse link
G COL2A1 collagen type II alpha 1 chain located_in IEA Ensembl GO_REF:0000107 NCBI chr27:6,756,994...6,787,733
Ensembl chr27:6,756,994...6,787,733 		JBrowse link
G COL4A1 collagen type IV alpha 1 chain located_in IEA UniProt
Ensembl		 GO_REF:0000043 GO_REF:0000044 GO_REF:0000107 NCBI chr22:58,511,210...58,651,949
Ensembl chr22:58,512,212...58,588,666 		JBrowse link
G COL4A2 collagen type IV alpha 2 chain located_in IEA
ISO		 UniProt
Ensembl
RGD		 PMID:11470186 GO_REF:0000043 GO_REF:0000044 GO_REF:0000107 RGD:11556219 (All species) (All species) NCBI chr22:58,656,579...58,820,560
Ensembl chr22:58,697,175...58,773,297 		JBrowse link
G COL4A3 collagen type IV alpha 3 chain located_in IEA UniProt
Ensembl		 GO_REF:0000043 GO_REF:0000044 GO_REF:0000107 NCBI chr25:39,975,547...40,106,833
Ensembl chr25:39,975,586...40,104,782 		JBrowse link
G COL4A4 collagen type IV alpha 4 chain located_in IEA UniProt
Ensembl		 GO_REF:0000043 GO_REF:0000044 GO_REF:0000107 NCBI chr25:39,849,680...39,976,035
Ensembl chr25:39,854,388...39,976,189 		JBrowse link
G COL4A5 collagen type IV alpha 5 chain located_in IEA Ensembl
UniProt		 GO_REF:0000043 GO_REF:0000044 GO_REF:0000107 NCBI chr  X:81,982,119...82,248,428
Ensembl chr  X:81,982,275...82,247,679 		JBrowse link
G COL4A6 collagen type IV alpha 6 chain located_in IEA UniProt
Ensembl		 GO_REF:0000043 GO_REF:0000044 GO_REF:0000107 NCBI chr  X:81,690,047...81,981,005
Ensembl chr  X:81,691,417...81,980,703 		JBrowse link
G COL5A1 collagen type V alpha 1 chain located_in IEA Ensembl GO_REF:0000107 NCBI chr 9:50,706,852...50,856,691
Ensembl chr 9:50,770,277...50,854,728 		JBrowse link
G COL6A1 collagen type VI alpha 1 chain located_in
is_active_in		 IEA
ISO		 (PMID:31837950) Ensembl
MGI		 PMID:31837950 GO_REF:0000107 NCBI chr31:39,301,718...39,319,895
Ensembl chr31:39,301,748...39,448,062 		JBrowse link
G COL6A3 collagen type VI alpha 3 chain located_in IEA UniProt GO_REF:0000043 GO_REF:0000044 NCBI chr25:47,971,439...48,052,673
Ensembl chr25:47,971,315...48,052,402 		JBrowse link
G COL7A1 collagen type VII alpha 1 chain located_in ISO (PMID:18757743), (PMID:19651211) MGI PMID:18757743 PMID:19651211 NCBI chr20:40,519,121...40,550,305
Ensembl chr20:40,519,378...40,552,935 		JBrowse link
G COL9A3 collagen type IX alpha 3 chain is_active_in IBA GO_Central GO_REF:0000033 NCBI chr24:46,653,400...46,669,183
Ensembl chr24:46,662,376...46,667,884 		JBrowse link
G DAG1 dystroglycan 1 is_active_in
located_in		 IBA
IEA		 GO_Central
Ensembl		 GO_REF:0000033 GO_REF:0000107 NCBI chr20:39,707,672...39,779,094
Ensembl chr20:39,708,053...39,778,550 		JBrowse link
G DLG1 discs large MAGUK scaffold protein 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr33:30,016,323...30,253,180
Ensembl chr33:30,016,600...30,253,547 		JBrowse link
G EFEMP1 EGF containing fibulin extracellular matrix protein 1 ISO RGD PMID:18803302 RGD:10401659 NCBI chr10:56,632,801...56,694,872
Ensembl chr10:56,579,899...56,787,187 		JBrowse link
G EFEMP2 EGF containing fibulin extracellular matrix protein 2 located_in ISO (PMID:17324935) UniProt PMID:17324935 NCBI chr18:51,389,797...51,396,109
Ensembl chr18:51,389,824...51,396,107 		JBrowse link
G EFNA5 ephrin A5 located_in IEA Ensembl GO_REF:0000107 NCBI chr 3:4,272,138...4,546,527
Ensembl chr 3:4,272,518...4,542,049 		JBrowse link
G EGFL6 EGF like domain multiple 6 located_in IEA Ensembl GO_REF:0000107 NCBI chr  X:9,944,648...10,062,699
Ensembl chr  X:9,995,846...10,062,266 		JBrowse link
G EGFLAM EGF like, fibronectin type III and laminin G domains located_in IEA Ensembl
UniProt		 GO_REF:0000107 GO_REF:0000117 NCBI chr 4:70,391,657...70,574,629
Ensembl chr 4:70,392,330...70,575,225 		JBrowse link
G ENTPD1 ectonucleoside triphosphate diphosphohydrolase 1 located_in ISO (PMID:11929769) MGI PMID:11929769 NCBI chr28:9,181,851...9,311,835
Ensembl chr28:9,211,050...9,323,939 		JBrowse link
G ENTPD2 ectonucleoside triphosphate diphosphohydrolase 2 located_in IEA Ensembl GO_REF:0000107 NCBI chr 9:48,589,408...48,594,852
Ensembl chr 9:48,570,891...48,594,452 		JBrowse link
G FBLN1 fibulin 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr10:20,498,097...20,564,776
Ensembl chr10:20,498,567...20,627,836 		JBrowse link
G FBN1 fibrillin 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr30:14,640,973...14,864,151
Ensembl chr30:14,640,973...14,864,151 		JBrowse link
G FGF9 fibroblast growth factor 9 ISO ovarian granulosa cells and follicles; seminiferous tubules RGD PMID:17494997 RGD:2289861 NCBI chr25:16,630,321...16,665,935
Ensembl chr25:16,632,812...16,663,550 		JBrowse link
G FN1 fibronectin 1 located_in ISO
IEA		 RGD
Ensembl		 PMID:14656002 GO_REF:0000107 RGD:1578551 NCBI chr37:22,456,854...22,522,410
Ensembl chr37:22,420,428...22,523,123 		JBrowse link
G FRAS1 Fraser extracellular matrix complex subunit 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr32:2,558,442...2,993,199
Ensembl chr32:2,558,354...2,991,063 		JBrowse link
G FREM1 FRAS1 related extracellular matrix 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr11:35,174,390...35,338,983
Ensembl chr11:35,176,934...35,310,335 		JBrowse link
G FREM2 FRAS1 related extracellular matrix 2 located_in IEA Ensembl GO_REF:0000107 NCBI chr25:2,097,264...2,264,049
Ensembl chr25:2,102,849...2,264,456 		JBrowse link
G FREM3 FRAS1 related extracellular matrix 3 located_in ISO (PMID:17251066), (PMID:17462874), (PMID:17596926) BHF-UCL PMID:17251066 PMID:17462874 PMID:17596926
G GSTO1 glutathione S-transferase omega 1 ISO RGD PMID:11311527 RGD:5490519 NCBI chr28:16,569,421...16,579,239
Ensembl chr28:16,569,066...16,619,880 		JBrowse link
G HMCN1 hemicentin 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr 7:18,798,802...19,254,847
Ensembl chr 7:18,798,796...19,253,786 		JBrowse link
G HMCN2 hemicentin 2 located_in ISO (PMID:17015624) MGI PMID:17015624 NCBI chr 9:53,486,151...53,633,340
Ensembl chr 9:53,485,760...53,633,808 		JBrowse link
G HSD17B14 hydroxysteroid 17-beta dehydrogenase 14 is_active_in IBA GO_Central GO_REF:0000033 NCBI chr 1:107,517,954...107,536,877
Ensembl chr 1:107,518,058...107,536,873 		JBrowse link
G HSPG2 heparan sulfate proteoglycan 2 located_in ISO
IEA		 RGD
UniProt		 PMID:11470186 GO_REF:0000043 GO_REF:0000044 GO_REF:0000117 RGD:11556219 (All species) (All species) NCBI chr 2:77,263,534...77,366,558
Ensembl chr 2:77,301,858...77,367,724 		JBrowse link
G ITGA6 integrin subunit alpha 6 located_in ISO (PMID:9524190) MGI PMID:9524190 NCBI chr36:16,777,363...16,858,725
Ensembl chr36:16,776,863...16,855,449 		JBrowse link
G ITGB1 integrin subunit beta 1 ISO RGD PMID:9202984 PMID:18596883 RGD:1581320 RGD:2325689 NCBI chr 2:3,728,472...3,757,696
Ensembl chr 2:3,670,596...3,756,961 		JBrowse link
G ITGB4 integrin subunit beta 4 located_in IEA Ensembl GO_REF:0000107 NCBI chr 9:4,825,148...4,855,266
Ensembl chr 9:4,825,292...4,855,820 		JBrowse link
G LAMA1 laminin subunit alpha 1 located_in
is_active_in		 IEA
IBA		 UniProt
GO_Central
Ensembl		 GO_REF:0000033 GO_REF:0000043 GO_REF:0000044 GO_REF:0000107 GO_REF:0000117 NCBI chr 7:73,309,383...73,438,543
Ensembl chr 7:73,309,388...73,448,151 		JBrowse link
G LAMA2 laminin subunit alpha 2 is_active_in
located_in		 ISO
IBA
IEA		 RGD
GO_Central
Ensembl
UniProt		 PMID:11271373 GO_REF:0000033 GO_REF:0000043 GO_REF:0000044 GO_REF:0000107 GO_REF:0000117 RGD:1600203 NCBI chr 1:67,645,461...68,096,506
Ensembl chr 1:67,611,122...68,095,914 		JBrowse link
G LAMA3 laminin subunit alpha 3 located_in
is_active_in		 IEA
IBA		 UniProt
GO_Central
Ensembl		 GO_REF:0000033 GO_REF:0000043 GO_REF:0000044 GO_REF:0000107 GO_REF:0000117 NCBI chr 7:64,405,719...64,654,910
Ensembl chr 7:64,406,082...64,655,268 		JBrowse link
G LAMA4 laminin subunit alpha 4 located_in IEA Ensembl
UniProt		 GO_REF:0000043 GO_REF:0000044 GO_REF:0000107 GO_REF:0000117 NCBI chr12:68,535,614...68,639,115
Ensembl chr12:68,535,860...68,678,762 		JBrowse link
G LAMA5 laminin subunit alpha 5 located_in
is_active_in		 IEA
ISO		 (PMID:10651091) UniProt
MGI		 PMID:10651091 GO_REF:0000043 GO_REF:0000044 GO_REF:0000117 NCBI chr24:46,315,008...46,351,279 JBrowse link
G LAMB1 laminin subunit beta 1 located_in IEA Ensembl
UniProt		 GO_REF:0000043 GO_REF:0000044 GO_REF:0000107 NCBI chr18:12,634,640...12,700,311
Ensembl chr18:12,630,554...12,700,308 		JBrowse link
G LAMB2 laminin subunit beta 2 located_in IEA Ensembl
UniProt		 GO_REF:0000043 GO_REF:0000044 GO_REF:0000107 NCBI chr20:40,036,967...40,062,628
Ensembl chr20:40,050,157...40,062,523 		JBrowse link
G LAMB3 laminin subunit beta 3 located_in ISO (PMID:18757743), (PMID:8012114), (PMID:9264260) MGI PMID:8012114 PMID:9264260 PMID:18757743 NCBI chr 7:8,272,326...8,313,322
Ensembl chr 7:8,272,736...8,310,474 		JBrowse link
G LAMB4 laminin subunit beta 4 located_in IEA UniProt GO_REF:0000043 GO_REF:0000044 NCBI chr18:12,517,124...12,609,253
Ensembl chr18:12,509,774...12,608,862 		JBrowse link
G LAMC1 laminin subunit gamma 1 located_in
is_active_in		 IEA
IBA		 UniProt
GO_Central
Ensembl		 GO_REF:0000033 GO_REF:0000043 GO_REF:0000044 GO_REF:0000107 NCBI chr 7:16,406,421...16,528,372
Ensembl chr 7:16,404,495...16,526,000 		JBrowse link
G LAMC2 laminin subunit gamma 2 located_in
is_active_in		 IEA
IBA		 UniProt
GO_Central		 GO_REF:0000033 GO_REF:0000043 GO_REF:0000044 NCBI chr 7:16,543,541...16,625,304
Ensembl chr 7:16,569,086...16,624,085 		JBrowse link
G LAMC3 laminin subunit gamma 3 located_in
is_active_in		 IEA
IBA		 UniProt
GO_Central
Ensembl		 GO_REF:0000033 GO_REF:0000043 GO_REF:0000044 GO_REF:0000107 NCBI chr 9:52,970,313...53,028,817
Ensembl chr 9:52,970,306...53,028,821 		JBrowse link
G LOC100687983 annexin A2-like located_in IEA UniProt GO_REF:0000043 GO_REF:0000044 NCBI chr 1:94,255,132...94,263,097 JBrowse link
G LOC477072 serotransferrin ISO RGD PMID:1723977 RGD:1625719 NCBI chr23:30,658,250...30,683,816
Ensembl chr23:30,595,704...30,683,845 		JBrowse link
G LOC607874 cystatin-C-like ISO RGD PMID:15872057 RGD:2306505 NCBI chr23:49,562...53,618 JBrowse link
G LOXL1 lysyl oxidase like 1 ISO RGD PMID:22382377 RGD:7394733 NCBI chr30:37,191,201...37,204,163
Ensembl chr30:37,183,128...37,204,058 		JBrowse link
G LOXL2 lysyl oxidase like 2 located_in IEA UniProt GO_REF:0000043 GO_REF:0000044 NCBI chr25:34,095,858...34,186,775
Ensembl chr25:34,126,335...34,185,969 		JBrowse link
G MATN2 matrilin 2 located_in ISO (PMID:19295126) MGI PMID:19295126 NCBI chr13:149,108...296,005
Ensembl chr13:149,095...295,994 		JBrowse link
G MEGF9 multiple EGF like domains 9 located_in ISO (PMID:16981854) MGI PMID:16981854 NCBI chr11:73,716,395...73,793,072 JBrowse link
G MMRN2 multimerin 2 located_in IEA Ensembl GO_REF:0000107 NCBI chr 4:34,577,072...34,604,521
Ensembl chr 4:34,589,597...34,605,576 		JBrowse link
G NID1 nidogen 1 located_in IEA UniProt
Ensembl		 GO_REF:0000043 GO_REF:0000044 GO_REF:0000107 NCBI chr 4:3,935,218...4,018,133
Ensembl chr 4:3,935,223...4,017,300 		JBrowse link
G NID2 nidogen 2 located_in IEA UniProt
Ensembl		 GO_REF:0000043 GO_REF:0000044 GO_REF:0000107 NCBI chr 8:28,240,427...28,300,729
Ensembl chr 8:28,102,780...28,300,507 		JBrowse link
G NPNT nephronectin located_in IEA Ensembl GO_REF:0000107 NCBI chr32:26,706,147...26,781,792
Ensembl chr32:26,705,476...26,781,275 		JBrowse link
G NTN1 netrin 1 located_in
is_active_in		 IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr 5:33,654,723...33,825,832
Ensembl chr 5:33,637,142...33,825,899 		JBrowse link
G NTN3 netrin 3 is_active_in IBA GO_Central GO_REF:0000033 NCBI chr 6:38,558,942...38,561,437
Ensembl chr 6:38,558,150...38,561,323 		JBrowse link
G NTN4 netrin 4 located_in IEA Ensembl GO_REF:0000107 NCBI chr15:35,527,491...35,650,170
Ensembl chr15:35,528,133...35,649,566 		JBrowse link
G P3H1 prolyl 3-hydroxylase 1 located_in ISO PMID:10455179 MGI PMID:10455179 RGD:633221 NCBI chr15:603,436...621,839
Ensembl chr15:603,329...621,568 		JBrowse link
G P3H2 prolyl 3-hydroxylase 2 located_in IEA Ensembl GO_REF:0000107 NCBI chr34:22,035,124...22,185,146
Ensembl chr34:22,023,068...22,185,026 		JBrowse link
G PAPLN papilin, proteoglycan like sulfated glycoprotein located_in ISO (PMID:18757743) MGI PMID:18757743 NCBI chr 8:46,587,197...46,620,381
Ensembl chr 8:46,592,854...46,618,612 		JBrowse link
G PTN pleiotrophin ISO RGD PMID:9990431 RGD:10044215 NCBI chr16:11,283,078...11,382,820
Ensembl chr16:11,283,077...11,382,814 		JBrowse link
G PXDN peroxidasin located_in IEA Ensembl GO_REF:0000107 NCBI chr17:834,625...891,551
Ensembl chr17:836,434...875,117 		JBrowse link
G RELL2 RELT like 2 located_in IEA Ensembl GO_REF:0000107 NCBI chr 2:36,598,175...36,602,607
Ensembl chr 2:36,599,149...36,602,020 		JBrowse link
G RPSA ribosomal protein SA ISO RGD PMID:11553521 RGD:2299067 NCBI chr23:9,070,953...9,077,058
Ensembl chr23:9,070,953...9,077,057 		JBrowse link
G RUNX1 RUNX family transcription factor 1 located_in ISO (PMID:17011173) MGI PMID:17011173 NCBI chr31:30,170,859...30,420,344
Ensembl chr31:30,170,605...30,420,839 		JBrowse link
G SERPINF1 serpin family F member 1 ISO RGD PMID:15616035 RGD:1359799 NCBI chr 9:45,891,368...45,902,768
Ensembl chr 9:45,891,410...45,902,765 		JBrowse link
G SMC3 structural maintenance of chromosomes 3 ISO RGD PMID:9015313 RGD:61563 NCBI chr28:21,889,690...21,928,367
Ensembl chr28:21,889,662...21,928,034 		JBrowse link
G SMOC1 SPARC related modular calcium binding 1 located_in
is_active_in		 ISO
IBA		 (PMID:18757743) MGI
GO_Central		 PMID:18757743 GO_REF:0000033 NCBI chr 8:43,608,511...43,763,262
Ensembl chr 8:43,607,634...43,763,274 		JBrowse link
G SMOC2 SPARC related modular calcium binding 2 located_in
is_active_in		 ISO
IBA		 (PMID:18757743) MGI
GO_Central		 PMID:18757743 GO_REF:0000033 NCBI chr 1:55,826,354...55,986,053
Ensembl chr 1:55,825,666...55,986,052 		JBrowse link
G SPARC secreted protein acidic and cysteine rich located_in IEA UniProt GO_REF:0000043 GO_REF:0000044 NCBI chr 4:57,659,541...57,682,147
Ensembl chr 4:57,659,650...57,681,711 		JBrowse link
G SPN sialophorin located_in ISO (PMID:7514104) MGI PMID:7514104 NCBI chr 6:17,770,303...17,774,946 JBrowse link
G TGFB2 transforming growth factor beta 2 ISO RGD PMID:16479080 RGD:2302094 NCBI chr38:13,430,832...13,511,655
Ensembl chr38:13,429,148...13,510,242 		JBrowse link
G TGFBI transforming growth factor beta induced ISO RGD PMID:12911551 RGD:1304421 NCBI chr11:23,932,038...23,971,983
Ensembl chr11:23,938,453...23,971,607 		JBrowse link
G THBS2 thrombospondin 2 located_in IEA Ensembl GO_REF:0000107 NCBI chr 1:56,402,519...56,429,975
Ensembl chr 1:56,402,524...56,451,892 		JBrowse link
G THBS4 thrombospondin 4 located_in IEA Ensembl GO_REF:0000107 NCBI chr 3:26,945,001...26,982,224
Ensembl chr 3:26,945,081...26,988,597 		JBrowse link
G TIMP1 TIMP metallopeptidase inhibitor 1 located_in ISO
IEA		 RGD
Ensembl		 PMID:9579471 GO_REF:0000107 RGD:2290365 NCBI chr  X:41,201,623...41,205,314
Ensembl chr  X:41,201,638...41,205,310 		JBrowse link
G TIMP2 TIMP metallopeptidase inhibitor 2 located_in ISO (PMID:12950084) MGI PMID:12950084 NCBI chr 9:2,521,882...2,533,883
Ensembl chr 9:2,521,882...2,533,989 		JBrowse link
G TIMP3 TIMP metallopeptidase inhibitor 3 located_in IEA Ensembl GO_REF:0000107 NCBI chr10:30,627,154...30,681,520
Ensembl chr10:30,627,154...30,694,288 		JBrowse link
G TINAG tubulointerstitial nephritis antigen located_in IEA Ensembl GO_REF:0000107 NCBI chr12:21,787,042...21,879,867
Ensembl chr12:21,786,669...21,879,091 		JBrowse link
G TNC tenascin C located_in IEA Ensembl GO_REF:0000107 NCBI chr11:69,077,532...69,169,673
Ensembl chr11:69,077,535...69,170,281 		JBrowse link
G USH2A usherin located_in
is_active_in		 IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr38:11,063,221...11,750,444
Ensembl chr38:11,063,817...11,750,444 		JBrowse link
G VEGFA vascular endothelial growth factor A ISO RGD PMID:11940521 RGD:628330 NCBI chr12:12,209,032...12,224,978
Ensembl chr12:12,208,231...12,224,965 		JBrowse link
G VTN vitronectin ISO RGD PMID:11728964 RGD:10003096 NCBI chr 9:42,617,860...42,620,825
Ensembl chr 9:42,614,941...42,630,864 		JBrowse link
G VWA1 von Willebrand factor A domain containing 1 located_in IEA Ensembl
UniProt		 GO_REF:0000043 GO_REF:0000044 GO_REF:0000107 NCBI chr 5:56,578,256...56,583,552
Ensembl chr 5:56,578,297...56,582,502 		JBrowse link
G VWA2 von Willebrand factor A domain containing 2 located_in
is_active_in		 IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr28:25,089,499...25,136,879
Ensembl chr28:25,089,499...25,136,893 		JBrowse link
G VWC2 von Willebrand factor C domain containing 2 located_in IEA Ensembl GO_REF:0000107 NCBI chr18:1,248,612...1,350,965
Ensembl chr18:1,257,357...1,350,856 		JBrowse link
collagen type I trimer term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G COL1A1 collagen type I alpha 1 chain part_of IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr 9:26,183,852...26,199,927
Ensembl chr 9:26,183,852...26,199,927 		JBrowse link
G COL1A2 collagen type I alpha 2 chain part_of IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr14:19,883,731...19,919,527
Ensembl chr14:19,883,868...19,919,527 		JBrowse link
collagen type II trimer term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G COL2A1 collagen type II alpha 1 chain part_of IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr27:6,756,994...6,787,733
Ensembl chr27:6,756,994...6,787,733 		JBrowse link
collagen type III trimer term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G COL3A1 collagen type III alpha 1 chain part_of IEA Ensembl GO_REF:0000107 NCBI chr36:30,488,250...30,526,367
Ensembl chr36:30,488,488...30,536,765 		JBrowse link
collagen type IV trimer term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CCBE1 collagen and calcium binding EGF domains 1 part_of IBA GO_Central GO_REF:0000033 NCBI chr 1:16,597,389...16,819,888
Ensembl chr 1:16,597,334...16,819,894 		JBrowse link
G COL4A1 collagen type IV alpha 1 chain part_of IEA Ensembl GO_REF:0000107 NCBI chr22:58,511,210...58,651,949
Ensembl chr22:58,512,212...58,588,666 		JBrowse link
G COL4A2 collagen type IV alpha 2 chain part_of IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr22:58,656,579...58,820,560
Ensembl chr22:58,697,175...58,773,297 		JBrowse link
G COL4A3 collagen type IV alpha 3 chain part_of IEA Ensembl GO_REF:0000107 NCBI chr25:39,975,547...40,106,833
Ensembl chr25:39,975,586...40,104,782 		JBrowse link
G COL4A4 collagen type IV alpha 4 chain part_of IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr25:39,849,680...39,976,035
Ensembl chr25:39,854,388...39,976,189 		JBrowse link
G COL4A5 collagen type IV alpha 5 chain part_of IEA Ensembl GO_REF:0000107 NCBI chr  X:81,982,119...82,248,428
Ensembl chr  X:81,982,275...82,247,679 		JBrowse link
G COL4A6 collagen type IV alpha 6 chain part_of IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr  X:81,690,047...81,981,005
Ensembl chr  X:81,691,417...81,980,703 		JBrowse link
collagen type V trimer term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G COL5A1 collagen type V alpha 1 chain part_of IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr 9:50,706,852...50,856,691
Ensembl chr 9:50,770,277...50,854,728 		JBrowse link
G COL5A2 collagen type V alpha 2 chain part_of IBA GO_Central GO_REF:0000033 NCBI chr36:30,538,863...30,677,450
Ensembl chr36:30,540,229...30,691,564 		JBrowse link
G COL5A3 collagen type V alpha 3 chain part_of IEA Ensembl GO_REF:0000107 NCBI chr20:51,037,604...51,075,220
Ensembl chr20:51,037,621...51,074,993 		JBrowse link
collagen type X trimer term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G COL10A1 collagen type X alpha 1 chain part_of IEA Ensembl GO_REF:0000107 NCBI chr12:71,803,372...71,810,049
Ensembl chr12:71,798,692...71,809,399 		JBrowse link
collagen type XI trimer term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G COL11A1 collagen type XI alpha 1 chain part_of IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr 6:47,425,387...47,622,189
Ensembl chr 6:47,425,307...47,621,012 		JBrowse link
G COL28A1 collagen type XXVIII alpha 1 chain part_of IBA GO_Central GO_REF:0000033 NCBI chr14:22,991,469...23,153,333
Ensembl chr14:22,993,286...23,153,305 		JBrowse link
collagen type XII trimer term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G COL12A1 collagen type XII alpha 1 chain ISO RGD PMID:10419532 RGD:727275 NCBI chr12:36,720,686...36,838,321
Ensembl chr12:36,646,408...36,838,622 		JBrowse link
cone matrix sheath term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G RBP3 retinol binding protein 3 located_in
is_active_in		 ISO
IBA		 (PMID:21935947) AgBase
GO_Central		 PMID:21935947 GO_REF:0000033 NCBI chr 4:34,974,559...34,983,460
Ensembl chr 4:34,974,638...34,982,907 		JBrowse link
EMILIN complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G EMILIN1 elastin microfibril interfacer 1 part_of IEA Ensembl GO_REF:0000107 NCBI chr17:21,071,502...21,078,888
Ensembl chr17:21,071,580...21,078,889 		JBrowse link
extracellular matrix of synaptic cleft term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HSD17B11 hydroxysteroid 17-beta dehydrogenase 11 is_active_in ISO PMID:17151913 SynGO PMID:17151913 RGD:13702411 NCBI chr32:10,821,332...10,854,541
Ensembl chr32:10,794,617...10,854,193 		JBrowse link
G LAMA5 laminin subunit alpha 5 is_active_in ISO (PMID:29091766) SynGO PMID:29091766 NCBI chr24:46,315,008...46,351,279 JBrowse link
G MMP9 matrix metallopeptidase 9 is_active_in ISO PMID:18332222 SynGO PMID:18332222 RGD:405650358 NCBI chr24:33,274,260...33,281,116
Ensembl chr24:33,274,268...33,281,293 		JBrowse link
G TNC tenascin C is_active_in ISO PMID:21734302 SynGO PMID:21734302 RGD:155230724 NCBI chr11:69,077,532...69,169,673
Ensembl chr11:69,077,535...69,170,281 		JBrowse link
fibrillar collagen trimer term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G COL27A1 collagen type XXVII alpha 1 chain part_of ISO (PMID:17331945) MGI PMID:17331945 NCBI chr11:68,413,101...68,548,408
Ensembl chr11:68,420,263...68,546,947 		JBrowse link
G LUM lumican part_of IEA Ensembl GO_REF:0000107 NCBI chr15:31,792,872...31,800,444
Ensembl chr15:31,793,233...31,800,912 		JBrowse link
interphotoreceptor matrix term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G IMPG1 interphotoreceptor matrix proteoglycan 1 located_in IEA UniProt
Ensembl		 GO_REF:0000044 GO_REF:0000107 NCBI chr12:37,506,511...37,614,683
Ensembl chr12:37,507,525...37,638,250 		JBrowse link
G IMPG2 interphotoreceptor matrix proteoglycan 2 located_in IEA UniProt
Ensembl		 GO_REF:0000044 GO_REF:0000107 NCBI chr33:7,706,069...7,785,817
Ensembl chr33:7,709,683...7,785,309 		JBrowse link
G RBP3 retinol binding protein 3 ISO RGD PMID:8282025 RGD:6893658 NCBI chr 4:34,974,559...34,983,460
Ensembl chr 4:34,974,638...34,982,907 		JBrowse link
G RTBDN retbindin located_in IEA UniProt GO_REF:0000044 NCBI chr20:49,324,843...49,337,226
Ensembl chr20:49,334,127...49,337,223 		JBrowse link
G VCAN versican located_in IEA UniProt GO_REF:0000044 NCBI chr 3:24,127,293...24,238,859
Ensembl chr 3:24,119,181...24,239,192 		JBrowse link
interstitial matrix term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ABI3BP ABI family member 3 binding protein located_in IEA Ensembl GO_REF:0000107 NCBI chr33:7,265,804...7,498,973
Ensembl chr33:7,266,685...7,418,106 		JBrowse link
G ADAMTSL4 ADAMTS like 4 located_in IEA Ensembl GO_REF:0000107 NCBI chr17:59,736,628...59,747,689
Ensembl chr17:59,736,534...59,746,980 		JBrowse link
G C12H6orf15 chromosome 12 C6orf15 homolog located_in ISO (PMID:18757743) MGI PMID:18757743 NCBI chr12:815,319...817,444
Ensembl chr12:815,483...816,767 		JBrowse link
G CCDC80 coiled-coil domain containing 80 located_in IEA Ensembl GO_REF:0000107 NCBI chr33:17,105,086...17,141,380
Ensembl chr33:17,105,086...17,139,896 		JBrowse link
G COL14A1 collagen type XIV alpha 1 chain located_in
is_active_in		 IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr13:19,033,423...19,249,189
Ensembl chr13:19,011,897...19,248,568 		JBrowse link
G ECM2 extracellular matrix protein 2 located_in IEA Ensembl GO_REF:0000107 NCBI chr 1:98,832,107...98,865,084
Ensembl chr 1:98,832,677...98,864,700 		JBrowse link
G EGFLAM EGF like, fibronectin type III and laminin G domains located_in IEA Ensembl GO_REF:0000107 NCBI chr 4:70,391,657...70,574,629
Ensembl chr 4:70,392,330...70,575,225 		JBrowse link
G IGF1 insulin like growth factor 1 ISO RGD PMID:15544842 RGD:1580475 NCBI chr15:41,203,320...41,275,964
Ensembl chr15:41,202,518...41,275,794 		JBrowse link
G KAZALD1 Kazal type serine peptidase inhibitor domain 1 located_in
is_active_in		 IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr28:13,741,085...13,745,426
Ensembl chr28:13,742,322...13,745,119 		JBrowse link
G MAMDC2 MAM domain containing 2 located_in ISO (PMID:18757743) MGI PMID:18757743 NCBI chr 1:87,303,230...87,451,197
Ensembl chr 1:87,304,216...87,451,037 		JBrowse link
G NAV2 neuron navigator 2 located_in IEA Ensembl GO_REF:0000107 NCBI chr21:41,458,280...42,181,227
Ensembl chr21:41,458,984...42,177,813 		JBrowse link
G NEPN nephrocan located_in IEA Ensembl GO_REF:0000107 NCBI chr 1:57,837,927...57,859,346 JBrowse link
G SMOC2 SPARC related modular calcium binding 2 located_in ISO (PMID:18757743) MGI PMID:18757743 NCBI chr 1:55,826,354...55,986,053
Ensembl chr 1:55,825,666...55,986,052 		JBrowse link
G TNC tenascin C located_in IEA Ensembl GO_REF:0000107 NCBI chr11:69,077,532...69,169,673
Ensembl chr11:69,077,535...69,170,281 		JBrowse link
G VIT vitrin located_in
is_active_in		 IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr17:29,142,924...29,259,800
Ensembl chr17:29,143,069...29,243,406 		JBrowse link
G VWA1 von Willebrand factor A domain containing 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr 5:56,578,256...56,583,552
Ensembl chr 5:56,578,297...56,582,502 		JBrowse link
G VWC2 von Willebrand factor C domain containing 2 located_in IEA Ensembl GO_REF:0000107 NCBI chr18:1,248,612...1,350,965
Ensembl chr18:1,257,357...1,350,856 		JBrowse link
laminin complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LAMA1 laminin subunit alpha 1 part_of IEA Ensembl GO_REF:0000107 NCBI chr 7:73,309,383...73,438,543
Ensembl chr 7:73,309,388...73,448,151 		JBrowse link
G LAMB1 laminin subunit beta 1 part_of IBA GO_Central GO_REF:0000033 NCBI chr18:12,634,640...12,700,311
Ensembl chr18:12,630,554...12,700,308 		JBrowse link
G LAMB2 laminin subunit beta 2 part_of IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr20:40,036,967...40,062,628
Ensembl chr20:40,050,157...40,062,523 		JBrowse link
G LAMB3 laminin subunit beta 3 part_of IBA GO_Central GO_REF:0000033 NCBI chr 7:8,272,326...8,313,322
Ensembl chr 7:8,272,736...8,310,474 		JBrowse link
G LAMB4 laminin subunit beta 4 part_of IBA GO_Central GO_REF:0000033 NCBI chr18:12,517,124...12,609,253
Ensembl chr18:12,509,774...12,608,862 		JBrowse link
G NTN4 netrin 4 part_of IBA GO_Central GO_REF:0000033 NCBI chr15:35,527,491...35,650,170
Ensembl chr15:35,528,133...35,649,566 		JBrowse link
G PMP22 peripheral myelin protein 22 part_of ISO (PMID:16436605) MGI PMID:16436605 NCBI chr 5:38,806,731...38,839,002
Ensembl chr 5:38,807,826...38,838,971 		JBrowse link
laminin-1 complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LAMA1 laminin subunit alpha 1 part_of IEA Ensembl GO_REF:0000107 NCBI chr 7:73,309,383...73,438,543
Ensembl chr 7:73,309,388...73,448,151 		JBrowse link
G LAMB1 laminin subunit beta 1 part_of IEA Ensembl GO_REF:0000107 NCBI chr18:12,634,640...12,700,311
Ensembl chr18:12,630,554...12,700,308 		JBrowse link
G LAMC1 laminin subunit gamma 1 ISO RGD PMID:8648916 RGD:633159 NCBI chr 7:16,406,421...16,528,372
Ensembl chr 7:16,404,495...16,526,000 		JBrowse link
laminin-10 complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LAMA5 laminin subunit alpha 5 part_of ISO (PMID:10964500)
(PMID:9299121)		 UniProt
MGI		 PMID:9299121 PMID:10964500 NCBI chr24:46,315,008...46,351,279 JBrowse link
G LAMB1 laminin subunit beta 1 part_of IEA Ensembl GO_REF:0000107 NCBI chr18:12,634,640...12,700,311
Ensembl chr18:12,630,554...12,700,308 		JBrowse link
G LAMC1 laminin subunit gamma 1 part_of ISO (PMID:9299121) MGI PMID:9299121 NCBI chr 7:16,406,421...16,528,372
Ensembl chr 7:16,404,495...16,526,000 		JBrowse link
laminin-2 complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LAMB1 laminin subunit beta 1 part_of IEA Ensembl GO_REF:0000107 NCBI chr18:12,634,640...12,700,311
Ensembl chr18:12,630,554...12,700,308 		JBrowse link
G LAMC2 laminin subunit gamma 2 ISO RGD PMID:9417868 RGD:633095 NCBI chr 7:16,543,541...16,625,304
Ensembl chr 7:16,569,086...16,624,085 		JBrowse link
laminin-3 complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LAMA1 laminin subunit alpha 1 part_of IEA Ensembl GO_REF:0000107 NCBI chr 7:73,309,383...73,438,543
Ensembl chr 7:73,309,388...73,448,151 		JBrowse link
G LAMA3 laminin subunit alpha 3 ISO RGD PMID:8923212 RGD:633107 NCBI chr 7:64,405,719...64,654,910
Ensembl chr 7:64,406,082...64,655,268 		JBrowse link
G LAMB2 laminin subunit beta 2 part_of IEA Ensembl GO_REF:0000107 NCBI chr20:40,036,967...40,062,628
Ensembl chr20:40,050,157...40,062,523 		JBrowse link
laminin-5 complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LAMA3 laminin subunit alpha 3 part_of IEA Ensembl GO_REF:0000107 NCBI chr 7:64,405,719...64,654,910
Ensembl chr 7:64,406,082...64,655,268 		JBrowse link
G LAMA5 laminin subunit alpha 5 ISO RGD PMID:9417868 RGD:633095 NCBI chr24:46,315,008...46,351,279 JBrowse link
G LAMB3 laminin subunit beta 3 part_of ISO (PMID:9264260) MGI PMID:9264260 NCBI chr 7:8,272,326...8,313,322
Ensembl chr 7:8,272,736...8,310,474 		JBrowse link
G LAMC2 laminin subunit gamma 2 part_of ISO (PMID:9264260) MGI PMID:9264260 NCBI chr 7:16,543,541...16,625,304
Ensembl chr 7:16,569,086...16,624,085 		JBrowse link
laminin-8 complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LAMB1 laminin subunit beta 1 part_of IEA Ensembl GO_REF:0000107 NCBI chr18:12,634,640...12,700,311
Ensembl chr18:12,630,554...12,700,308 		JBrowse link
matrilin complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G MATN2 matrilin 2 part_of ISO (PMID:10224097) ComplexPortal PMID:10224097 NCBI chr13:149,108...296,005
Ensembl chr13:149,095...295,994 		JBrowse link
G MATN3 matrilin 3 part_of IEA Ensembl GO_REF:0000107 NCBI chr17:15,037,175...15,054,451
Ensembl chr17:15,037,995...15,054,436 		JBrowse link
G MATN4 matrilin 4 part_of ISO (PMID:11279097) ComplexPortal PMID:11279097 NCBI chr24:32,601,175...32,614,109
Ensembl chr24:32,599,508...32,613,872 		JBrowse link
multimerin complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G MMRN1 multimerin 1 part_of IEA Ensembl GO_REF:0000107 NCBI chr32:13,111,043...13,184,681
Ensembl chr32:13,110,969...13,184,649 		JBrowse link
perineuronal net term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACAN aggrecan is_active_in ISO
IBA		 RGD
GO_Central		 PMID:18364019 GO_REF:0000033 RGD:2315810 NCBI chr 3:51,995,100...52,031,812
Ensembl chr 3:51,969,779...52,031,544 		JBrowse link
G BCAN brevican is_active_in
located_in		 ISO
IBA
IEA		 MMO:0000669 RGD
GO_Central
Ensembl		 PMID:16644727 GO_REF:0000033 GO_REF:0000107 RGD:9589827 NCBI chr 7:41,313,578...41,330,178
Ensembl chr 7:41,313,579...41,330,178 		JBrowse link
G HAPLN1 hyaluronan and proteoglycan link protein 1 is_active_in IBA GO_Central GO_REF:0000033 NCBI chr 3:23,999,148...24,077,935
Ensembl chr 3:23,998,545...24,074,580 		JBrowse link
G HAPLN2 hyaluronan and proteoglycan link protein 2 is_active_in IBA GO_Central GO_REF:0000033 NCBI chr 7:41,340,493...41,346,607
Ensembl chr 7:41,341,883...41,344,117 		JBrowse link
G HAPLN4 hyaluronan and proteoglycan link protein 4 located_in
is_active_in		 IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr20:43,932,364...43,940,438
Ensembl chr20:43,933,769...43,938,262 		JBrowse link
G NCAN neurocan is_active_in ISO
IBA		 MMO:0000669,MMO:0000662 RGD
GO_Central		 PMID:16644727 GO_REF:0000033 RGD:9589827 NCBI chr20:43,944,257...43,970,864
Ensembl chr20:43,945,143...43,970,886 		JBrowse link
G PTPRZ1 protein tyrosine phosphatase receptor type Z1 located_in ISO
IEA		 RGD
Ensembl		 PMID:16644727 GO_REF:0000107 RGD:9589827 NCBI chr14:59,769,553...59,944,111
Ensembl chr14:59,827,650...59,943,315 		JBrowse link
G TNR tenascin R located_in ISO (PMID:10341229), (PMID:8244531) MGI PMID:8244531 PMID:10341229 NCBI chr 7:23,721,227...24,125,183
Ensembl chr 7:24,019,095...24,122,530 		JBrowse link
G VCAN versican is_active_in ISO
IBA		 MMO:0000669,MMO:0000662 RGD
GO_Central		 PMID:16644727 GO_REF:0000033 RGD:9589827 NCBI chr 3:24,127,293...24,238,859
Ensembl chr 3:24,119,181...24,239,192 		JBrowse link
perisynaptic extracellular matrix term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACAN aggrecan located_in
is_active_in		 IEA
ISO		 (PMID:27615741) Ensembl
SynGO		 PMID:27615741 GO_REF:0000107 NCBI chr 3:51,995,100...52,031,812
Ensembl chr 3:51,969,779...52,031,544 		JBrowse link
G BCAN brevican is_active_in ISO PMID:16503162
PMID:10414531		 SynGO PMID:10414531 PMID:16503162 RGD:13702202 RGD:13702210 NCBI chr 7:41,313,578...41,330,178
Ensembl chr 7:41,313,579...41,330,178 		JBrowse link
G NCAN neurocan is_active_in ISO (PMID:29670169), (PMID:30356641) SynGO PMID:29670169 PMID:30356641 NCBI chr20:43,944,257...43,970,864
Ensembl chr20:43,945,143...43,970,886 		JBrowse link
G SLIT2 slit guidance ligand 2 is_active_in ISO PMID:34686348 SynGO PMID:34686348 RGD:405650259 NCBI chr 3:88,964,707...89,311,817
Ensembl chr 3:88,966,232...89,312,955 		JBrowse link
G TNC tenascin C located_in
is_active_in		 IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr11:69,077,532...69,169,673
Ensembl chr11:69,077,535...69,170,281 		JBrowse link
G TNN tenascin N is_active_in IBA GO_Central GO_REF:0000033 NCBI chr 7:24,246,481...24,342,686
Ensembl chr 7:24,230,930...24,308,520 		JBrowse link
G TNR tenascin R is_active_in ISO PMID:11598921 SynGO PMID:11598921 RGD:13702357 NCBI chr 7:23,721,227...24,125,183
Ensembl chr 7:24,019,095...24,122,530 		JBrowse link
tenascin complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G TNC tenascin C part_of IEA Ensembl GO_REF:0000107 NCBI chr11:69,077,532...69,169,673
Ensembl chr11:69,077,535...69,170,281 		JBrowse link
G TNN tenascin N part_of IEA Ensembl GO_REF:0000107 NCBI chr 7:24,246,481...24,342,686
Ensembl chr 7:24,230,930...24,308,520 		JBrowse link
G TNR tenascin R part_of ISO (PMID:2477380) ComplexPortal PMID:2477380 NCBI chr 7:23,721,227...24,125,183
Ensembl chr 7:24,019,095...24,122,530 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 23074
    cellular anatomical structure 22784
      external encapsulating structure 414
        extracellular matrix 412
          collagen-containing extracellular matrix 268
            EMILIN complex 1
            anchoring collagen complex + 1
            basement membrane + 115
            collagen type XXVI trimer 0
            collagen type XXVIII trimer 0
            complex of collagen trimers + 19
            cuticular extracellular matrix + 0
            extracellular matrix of synaptic cleft 4
            hyaline layer + 0
            interphotoreceptor matrix + 5
            interstitial matrix 17
            matrilin complex 3
            multimerin complex 1
            perisynaptic extracellular matrix + 12
            synapse-associated extracellular matrix + 15
            tenascin complex 3
            transforming growth factor beta complex 0
Path 2
Term Annotations click to browse term
  cellular_component 23074
    cellular anatomical structure 22784
      cell periphery 6017
        external encapsulating structure 414
          extracellular matrix 412
            collagen-containing extracellular matrix 268
              EMILIN complex 1
              anchoring collagen complex + 1
              basement membrane + 115
              collagen type XXVI trimer 0
              collagen type XXVIII trimer 0
              complex of collagen trimers + 19
              cuticular extracellular matrix + 0
              extracellular matrix of synaptic cleft 4
              hyaline layer + 0
              interphotoreceptor matrix + 5
              interstitial matrix 17
              matrilin complex 3
              multimerin complex 1
              perisynaptic extracellular matrix + 12
              synapse-associated extracellular matrix + 15
              tenascin complex 3
              transforming growth factor beta complex 0
paths to the root