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ONTOLOGY REPORT - ANNOTATIONS


Term:collagen-containing extracellular matrix
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Accession:GO:0062023 term browser browse the term
Definition:An extracellular matrix consisting mainly of proteins (especially collagen) and glycosaminoglycans (mostly as proteoglycans) that provides not only essential physical scaffolding for the cellular constituents but can also initiate crucial biochemical and biomechanical cues required for tissue morphogenesis, differentiation and homeostasis. The components are secreted by cells in the vicinity and form a sheet underlying or overlying cells such as endothelial and epithelial cells.
Synonyms:only_in_taxon: NCBITaxon:33208 ! Metazoa



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collagen-containing extracellular matrix term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abi3bp ABI family member 3 binding protein is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr11:43,912,187...44,128,888
Ensembl chr11:43,913,043...44,128,929
JBrowse link
G Adamts1 ADAM metallopeptidase with thrombospondin type 1 motif, 1 IDA RGD PMID:15777654 RGD:9681749 NCBI chr11:24,932,227...24,941,068
Ensembl chr11:24,931,761...24,941,103
JBrowse link
G Adamts10 ADAM metallopeptidase with thrombospondin type 1 motif, 10 located_in ISO (PMID:21402694) RGD PMID:21402694 NCBI chr 7:14,331,659...14,361,620
Ensembl chr 7:14,331,745...14,361,620
JBrowse link
G Adamts15 ADAM metallopeptidase with thrombospondin type 1 motif, 15 located_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 8:29,307,864...29,331,249
Ensembl chr 8:29,307,865...29,331,249
JBrowse link
G Adamts2 ADAM metallopeptidase with thrombospondin type 1 motif, 2 located_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr10:34,920,996...35,126,465
Ensembl chr10:34,921,049...35,123,821
JBrowse link
G Adamts5 ADAM metallopeptidase with thrombospondin type 1 motif, 5 located_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr11:25,000,627...25,047,205
Ensembl chr11:25,000,637...25,047,205
JBrowse link
G Adamts8 ADAM metallopeptidase with thrombospondin type 1 motif, 8 located_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 8:29,349,078...29,368,413
Ensembl chr 8:29,349,114...29,368,404
JBrowse link
G Agrn agrin located_in ISO (PMID:17628813) RGD PMID:17628813 NCBI chr 5:166,749,306...166,782,212
Ensembl chr 5:166,749,310...166,786,003
JBrowse link
G Ahsg alpha-2-HS-glycoprotein IDA RGD PMID:7794128 RGD:1626075 NCBI chr11:78,117,903...78,145,956
Ensembl chr11:78,117,918...78,145,999
JBrowse link
G Amelx amelogenin, X-linked located_in
is_active_in
ISO
IEA
IBA
(PMID:2509010)
GO_REF:0000002
PMID:21873635
RGD
InterPro
PMID:2509010 PMID:21873635 GO_REF:0000002, RGD:13792537 NCBI chr  X:25,076,362...25,087,660
Ensembl chr  X:25,076,362...25,087,660
JBrowse link
G Angpt1 angiopoietin 1 is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:73,528,345...73,783,953
Ensembl chr 7:73,531,486...73,784,067
JBrowse link
G Angpt2 angiopoietin 2 is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr16:71,088,364...71,138,805
Ensembl chr16:71,088,364...71,138,804
JBrowse link
G Angpt4 angiopoietin 4 is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:140,420,389...140,454,213
Ensembl chr 3:140,420,389...140,453,583
JBrowse link
G Angptl1 angiopoietin-like 1 is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr13:68,963,198...68,969,742
Ensembl chr13:68,962,991...68,992,570
JBrowse link
G Angptl2 angiopoietin-like 2 is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:16,517,185...16,547,024
Ensembl chr 3:16,517,420...16,548,178
JBrowse link
G Angptl3 angiopoietin-like 3 is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:113,703,007...113,710,044
Ensembl chr 5:113,703,012...113,709,957
JBrowse link
G Angptl4 angiopoietin-like 4 is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:14,550,288...14,557,797
Ensembl chr 7:14,550,311...14,556,519
JBrowse link
G Angptl6 angiopoietin-like 6 is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:19,413,617...19,419,925
Ensembl chr 8:19,413,619...19,419,925
JBrowse link
G Angptl7 angiopoietin like 7 is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:158,932,094...158,937,597
Ensembl chr 5:158,932,794...158,937,324
JBrowse link
G Bglap bone gamma-carboxyglutamate protein located_in ISO (PMID:8101026), (PMID:8218200) RGD PMID:8101026 PMID:8218200 NCBI chr 2:173,838,518...173,839,495
Ensembl chr 2:173,838,518...173,839,495
JBrowse link
G Bmp7 bone morphogenetic protein 7 IDA RGD PMID:9626398 RGD:2289041 NCBI chr 3:161,639,915...161,716,938
Ensembl chr 3:161,516,462...161,716,788
JBrowse link
G Calr calreticulin IDA RGD PMID:12782144 RGD:2326184 NCBI chr19:23,308,525...23,313,420
Ensembl chr19:23,308,351...23,313,414
JBrowse link
G Ccn3 cellular communication network factor 3 IDA RGD PMID:19286457 RGD:2306292 NCBI chr 7:86,094,000...86,101,022
Ensembl chr 7:86,094,000...86,101,019
JBrowse link
G Chadl chondroadherin-like located_in ISO (PMID:25451920)
(MGI:5617405|PMID:25451920)
RGD PMID:25451920 MGI:5617405 NCBI chr 7:113,205,323...113,218,678
Ensembl chr 7:113,210,748...113,217,272
JBrowse link
G Cilp cartilage intermediate layer protein located_in
is_active_in
ISO
IBA
(PMID:9722583)
PMID:21873635
RGD PMID:9722583 PMID:21873635 RGD:13792537 NCBI chr 8:65,777,281...65,792,251
Ensembl chr 8:65,777,281...65,792,251
JBrowse link
G Clu clusterin colocalizes_with ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr15:40,161,068...40,200,315
Ensembl chr15:40,174,617...40,200,315
JBrowse link
G Coch cochlin located_in
is_active_in
ISO
IBA
(PMID:22610276)
PMID:21873635
RGD PMID:22610276 PMID:21873635 RGD:13792537 NCBI chr 6:69,031,139...69,045,124
Ensembl chr 6:69,031,167...69,045,109
JBrowse link
G Col10a1 collagen type X alpha 1 chain located_in IDA
ISO
(PMID:17876790) RGD PMID:17876790 PMID:7649371 RGD:1298775 NCBI chr20:38,183,103...38,189,488
Ensembl chr20:38,182,494...38,189,494
JBrowse link
G Col11a1 collagen type XI alpha 1 chain IDA RGD PMID:17062562 RGD:1600882 NCBI chr 2:201,820,715...202,013,853
Ensembl chr 2:201,820,715...202,013,853
JBrowse link
G Col12a1 collagen type XII alpha 1 chain is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:80,547,592...80,665,665
Ensembl chr 8:80,547,593...80,665,686
JBrowse link
G Col14a1 collagen type XIV alpha 1 chain is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:86,722,093...86,937,215
Ensembl chr 7:86,722,094...86,937,214
JBrowse link
G Col1a1 collagen type I alpha 1 chain located_in ISO (MGI:6765278|PMID:34368841) RGD PMID:34368841 MGI:6765278 NCBI chr10:79,883,622...79,900,625
Ensembl chr10:79,883,622...79,900,624
JBrowse link
G Col1a2 collagen type I alpha 2 chain located_in ISO (MGI:6765278|PMID:34368841) RGD PMID:34368841 MGI:6765278 NCBI chr 4:32,563,938...32,598,868
Ensembl chr 4:32,563,381...32,598,867
JBrowse link
G Col20a1 collagen type XX alpha 1 chain is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:168,102,475...168,134,759
Ensembl chr 3:168,084,560...168,135,309
JBrowse link
G Col2a1 collagen type II alpha 1 chain IDA RGD PMID:7649371 RGD:1298775 NCBI chr 7:129,098,489...129,127,620
Ensembl chr 7:129,098,786...129,127,546
JBrowse link
G Col3a1 collagen type III alpha 1 chain located_in IDA
ISO
(PMID:14970208), (PMID:7487954) RGD PMID:7487954 PMID:14970208 PMID:20610530 RGD:7257557 NCBI chr 9:47,374,611...47,410,547
Ensembl chr 9:47,374,593...47,410,547
JBrowse link
G Col5a1 collagen type V alpha 1 chain located_in ISO (PMID:14970208) RGD PMID:14970208 NCBI chr 3:11,208,429...11,356,715
Ensembl chr 3:11,208,512...11,354,588
JBrowse link
G Col5a3 collagen type V alpha 3 chain IDA RGD PMID:15383532 RGD:5683638 NCBI chr 8:19,304,564...19,349,809
Ensembl chr 8:19,304,571...19,349,853
JBrowse link
G Col6a2 collagen type VI alpha 2 chain is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr20:12,021,676...12,049,425
Ensembl chr20:12,021,767...12,057,564
JBrowse link
G Col7a1 collagen type VII alpha 1 chain is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:109,604,877...109,637,252
Ensembl chr 8:109,604,861...109,637,252
JBrowse link
G Comp cartilage oligomeric matrix protein is_active_in IDA
IBA
PMID:21873635 RGD
GO_Central
PMID:16778685 PMID:21873635 RGD:1600712, RGD:13792537 NCBI chr16:19,047,206...19,055,584
Ensembl chr16:19,047,207...19,055,845
JBrowse link
G Dmbt1 deleted in malignant brain tumors 1 IDA RGD PMID:11121438 RGD:1599784 NCBI chr 1:185,617,469...185,696,476
Ensembl chr 1:185,617,294...185,696,478
JBrowse link
G Dspp dentin sialophosphoprotein IDA RGD PMID:16776771 RGD:1599799 NCBI chr14:5,565,562...5,571,669
Ensembl chr14:5,565,629...5,571,672
JBrowse link
G Ecm1 extracellular matrix protein 1 located_in
is_active_in
ISO
IBA
(PMID:20870722)
PMID:21873635
RGD PMID:20870722 PMID:21873635 RGD:13792537 NCBI chr 2:183,287,491...183,292,729
Ensembl chr 2:183,287,322...183,292,671
JBrowse link
G Eln elastin located_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr12:21,968,544...22,011,929
Ensembl chr12:21,968,544...22,011,928
JBrowse link
G Emilin1 elastin microfibril interfacer 1 located_in ISO (PMID:26462740) RGD PMID:26462740 NCBI chr 6:25,455,974...25,463,736
Ensembl chr 6:25,445,298...25,463,698
JBrowse link
G F2 coagulation factor II is_active_in IDA
IBA
PMID:21873635 RGD
GO_Central
PMID:21191574 PMID:21873635 RGD:7387308, RGD:13792537 NCBI chr 3:77,596,196...77,609,486
Ensembl chr 3:77,596,198...77,609,486
JBrowse link
G F3 coagulation factor III, tissue factor located_in ISO (PMID:2704749) RGD PMID:2704749 NCBI chr 2:209,827,061...209,838,666
Ensembl chr 2:209,826,959...209,838,668
JBrowse link
G Fbln5 fibulin 5 colocalizes_with
located_in
ISO
ISS
(MGI:3610795|PMID:15528465)
GO_REF:0000024
(PMID:17035250)
RGD
UniProt
PMID:15528465 PMID:17035250 GO_REF:0000024 MGI:3610795 NCBI chr 6:120,899,219...120,977,829
Ensembl chr 6:120,899,224...120,977,755
JBrowse link
G Fbn1 fibrillin 1 located_in IDA
ISO
(MGI:3698678|PMID:17099216), (MGI:5795811|PMID:24039232) RGD PMID:17099216 PMID:24039232 PMID:15849235 MGI:3698678 MGI:5795811, RGD:1601147 NCBI chr 3:112,554,257...112,750,835
Ensembl chr 3:112,554,925...112,750,889
JBrowse link
G Fcna ficolin A is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:8,445,904...8,449,128
Ensembl chr 3:8,445,907...8,449,105
JBrowse link
G Fcnb ficolin B is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:11,393,771...11,402,198
Ensembl chr 3:11,393,739...11,402,151
JBrowse link
G Fgb fibrinogen beta chain is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:168,394,901...168,402,863
Ensembl chr 2:168,394,916...168,405,979
JBrowse link
G Fgf10 fibroblast growth factor 10 colocalizes_with ISO (PMID:17959718) RGD PMID:17959718 NCBI chr 2:50,801,897...50,875,428
Ensembl chr 2:50,800,992...50,876,866
JBrowse link
G Fgfr2 fibroblast growth factor receptor 2 colocalizes_with ISO (PMID:17959718) RGD PMID:17959718 NCBI chr 1:184,745,418...184,850,655
Ensembl chr 1:184,745,420...184,850,626
JBrowse link
G Fgg fibrinogen gamma chain is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:168,354,880...168,362,325
Ensembl chr 2:168,355,013...168,362,322
JBrowse link
G Fgl1 fibrinogen-like 1 is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr16:51,120,652...51,150,907
Ensembl chr16:51,120,694...51,151,093
JBrowse link
G Fgl2 fibrinogen-like 2 is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:13,710,566...13,716,207
Ensembl chr 4:13,710,575...13,716,207
JBrowse link
G Fibcd1 fibrinogen C domain containing 1 is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:15,092,681...15,126,399
Ensembl chr 3:15,092,681...15,126,399
JBrowse link
G Fmod fibromodulin IDA RGD PMID:12941075 RGD:2315082 NCBI chr13:45,493,517...45,504,134
Ensembl chr13:45,493,517...45,504,133
JBrowse link
G Fn1 fibronectin 1 located_in
is_active_in
ISO
IBA
(PMID:16157329), (PMID:1632457)
(MGI:6765278|PMID:34368841)
PMID:21873635
RGD PMID:1632457 PMID:16157329 PMID:34368841 PMID:21873635 MGI:6765278, RGD:13792537 NCBI chr 9:73,196,044...73,264,695
Ensembl chr 9:73,196,044...73,264,678
JBrowse link
G Fras1 Fraser extracellular matrix complex subunit 1 is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr14:12,791,407...13,200,862
Ensembl chr14:12,793,599...13,200,726
JBrowse link
G Frem1 Fras1 related extracellular matrix 1 is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:97,321,275...97,469,523
Ensembl chr 5:97,322,538...97,469,543
JBrowse link
G Frem2 FRAS1 related extracellular matrix 2 is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:137,602,784...137,740,785
Ensembl chr 2:137,602,784...137,740,785
JBrowse link
G Frem3 FRAS1 related extracellular matrix 3 is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr19:27,308,469...27,366,771
Ensembl chr19:27,308,469...27,366,771
JBrowse link
G Gh1 growth hormone 1 IDA RGD PMID:9255605 RGD:12904880 NCBI chr10:91,228,102...91,230,079
Ensembl chr10:91,228,103...91,230,078
JBrowse link
G Gpc1 glypican 1 located_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 9:93,396,234...93,424,047
Ensembl chr 9:93,396,234...93,424,047
JBrowse link
G Gpc2 glypican 2 located_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr12:17,277,875...17,284,297
Ensembl chr12:17,277,875...17,284,208
JBrowse link
G Gpc3 glypican 3 located_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr  X:131,868,983...132,236,837
Ensembl chr  X:131,868,990...132,236,798
JBrowse link
G Gpc4 glypican 4 located_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr  X:131,644,711...131,755,349
Ensembl chr  X:131,644,704...131,755,284
JBrowse link
G Gpc5 glypican 5 located_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr15:92,207,275...93,644,054
Ensembl chr15:92,239,176...93,643,282
JBrowse link
G Gpc6 glypican 6 located_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr15:94,030,218...95,027,883
Ensembl chr15:94,029,884...95,024,006
JBrowse link
G Grm1 glutamate metabotropic receptor 1 located_in IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr 1:5,058,285...5,453,170
Ensembl chr 1:5,058,292...5,453,170
JBrowse link
G Hsp90aa1 heat shock protein 90 alpha family class A member 1 IDA RGD PMID:15497505 RGD:2316936 NCBI chr 6:129,702,376...129,707,907
Ensembl chr 6:129,702,383...129,707,268
JBrowse link
G Hspg2 heparan sulfate proteoglycan 2 IDA RGD PMID:15928048 RGD:1624263 NCBI chr 5:149,677,437...149,778,594
Ensembl chr 5:149,677,476...149,778,594
JBrowse link
G Htra1 HtrA serine peptidase 1 is_active_in IDA
IBA
dentin matrix
PMID:21873635
RGD
GO_Central
PMID:22595117 PMID:21873635 RGD:7394756, RGD:13792537 NCBI chr 1:185,497,815...185,547,380
Ensembl chr 1:185,497,735...185,547,379
JBrowse link
G Lamb1 laminin subunit beta 1 IDA RGD PMID:15928048 RGD:1624263 NCBI chr 6:47,835,492...47,902,585
Ensembl chr 6:47,835,525...47,902,585
JBrowse link
G Lamc1 laminin subunit gamma 1 IDA RGD PMID:15928048 RGD:1624263 NCBI chr13:65,374,372...65,501,492
Ensembl chr13:65,374,372...65,501,492
JBrowse link
G Lox lysyl oxidase is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr18:45,964,311...46,041,477
Ensembl chr18:45,967,343...46,041,477
JBrowse link
G Loxl1 lysyl oxidase-like 1 is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:58,692,592...58,716,356
Ensembl chr 8:58,692,593...58,716,356
JBrowse link
G Loxl2 lysyl oxidase-like 2 is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr15:44,683,449...44,773,067
Ensembl chr15:44,683,880...44,773,067
JBrowse link
G Loxl3 lysyl oxidase-like 3 is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:115,540,640...115,556,958
Ensembl chr 4:115,540,685...115,557,466
JBrowse link
G Loxl4 lysyl oxidase-like 4 is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:241,396,183...241,416,385
Ensembl chr 1:241,397,983...241,416,322
JBrowse link
G Lrrc15 leucine rich repeat containing 15 colocalizes_with
located_in
ISO
IEA
(PMID:16098915)
GO_REF:0000107
RGD
Ensembl
PMID:16098915 GO_REF:0000107 NCBI chr11:70,469,775...70,484,268
Ensembl chr11:70,469,804...70,484,267
JBrowse link
G Ltbp1 latent transforming growth factor beta binding protein 1 located_in IDA
ISO
(PMID:16157329) RGD PMID:16157329 PMID:9766531 RGD:10412061 NCBI chr 6:20,029,629...20,425,339
Ensembl chr 6:20,029,629...20,425,349
JBrowse link
G Ltbp3 latent transforming growth factor beta binding protein 3 located_in ISO (PMID:16157329) RGD PMID:16157329 NCBI chr 1:203,029,412...203,045,975
Ensembl chr 1:203,029,877...203,045,975
JBrowse link
G Ltbp4 latent transforming growth factor beta binding protein 4 located_in ISO (PMID:16157329) RGD PMID:16157329 NCBI chr 1:82,600,136...82,634,346
Ensembl chr 1:82,600,136...82,632,178
JBrowse link
G Matn1 matrilin 1 is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:143,117,198...143,127,140
Ensembl chr 5:143,117,504...143,127,059
JBrowse link
G Matn2 matrilin 2 located_in
is_active_in
ISO
IBA
(MGI:1336568|PMID:10224097)
PMID:21873635
RGD PMID:10224097 PMID:21873635 MGI:1336568, RGD:13792537 NCBI chr 7:65,494,996...65,644,613
Ensembl chr 7:65,494,834...65,645,113
JBrowse link
G Matn3 matrilin 3 located_in
is_active_in
ISO
IBA
(MGI:1353153|PMID:10660556)
PMID:21873635
RGD PMID:10660556 PMID:21873635 MGI:1353153, RGD:13792537 NCBI chr 6:31,748,383...31,768,101
Ensembl chr 6:31,748,474...31,768,101
JBrowse link
G Matn4 matrilin 4 located_in
is_active_in
ISO
IBA
(MGI:1934728|PMID:11279097)
PMID:21873635
RGD PMID:11279097 PMID:21873635 MGI:1934728, RGD:13792537 NCBI chr 3:153,120,605...153,135,628
Ensembl chr 3:153,120,632...153,135,865
JBrowse link
G Mbl1 mannose binding lectin 1 is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr16:17,029,146...17,035,187
Ensembl chr16:17,029,118...17,035,174
JBrowse link
G Mbl2 mannose binding lectin 2 is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:228,016,439...228,024,736 JBrowse link
G Mfap4 microfibril associated protein 4 located_in ISO (PMID:26601954) RGD PMID:26601954 NCBI chr10:46,167,158...46,170,176
Ensembl chr10:46,167,217...46,170,155
JBrowse link
G Mgp matrix Gla protein located_in IDA
IEA
GO_REF:0000002 InterPro
RGD
PMID:11716499 GO_REF:0000002, RGD:2293597 NCBI chr 4:169,766,290...169,769,612
Ensembl chr 4:169,766,279...169,769,667
JBrowse link
G Mmrn1 multimerin 1 located_in ISO (PMID:9454761) RGD PMID:9454761 NCBI chr 4:89,875,408...89,950,814
Ensembl chr 4:89,903,174...89,950,474
JBrowse link
G Mmrn2 multimerin 2 located_in ISO (PMID:23979707) RGD PMID:23979707 NCBI chr16:9,705,925...9,727,405
Ensembl chr16:9,705,892...9,727,405
JBrowse link
G Myoc myocilin located_in ISS
ISO
IEA
GO_REF:0000024
(PMID:11773026)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:11773026 GO_REF:0000024 GO_REF:0000107 NCBI chr13:74,976,730...74,987,128
Ensembl chr13:74,976,730...74,987,127
JBrowse link
G Ndp norrin cystine knot growth factor NDP located_in ISO (PMID:15035989)
(MGI:3621833|PMID:15035989)
RGD PMID:15035989 MGI:3621833 NCBI chr  X:5,796,487...5,820,934
Ensembl chr  X:5,796,487...5,820,934
JBrowse link
G Npnt nephronectin located_in ISO (MGI:4947862|PMID:21335239) RGD PMID:21335239 MGI:4947862 NCBI chr 2:221,391,151...221,459,527
Ensembl chr 2:221,391,153...221,459,401
JBrowse link
G Pcsk6 proprotein convertase subtilisin/kexin type 6 located_in
is_active_in
ISO
IBA
(PMID:12535616)
PMID:21873635
RGD PMID:12535616 PMID:21873635 RGD:13792537 NCBI chr 1:119,428,978...119,627,626
Ensembl chr 1:119,429,265...119,627,596
JBrowse link
G Plat plasminogen activator, tissue type NOT|located_in ISO (PMID:1632457) RGD PMID:1632457 NCBI chr16:69,240,582...69,265,177
Ensembl chr16:69,240,585...69,268,223
JBrowse link
G Plod3 procollagen-lysine, 2-oxoglutarate 5-dioxygenase 3 located_in ISO (MGI:5804716|PMID:27435297) RGD PMID:27435297 MGI:5804716 NCBI chr12:19,676,384...19,686,945
Ensembl chr12:19,676,386...19,686,960
JBrowse link
G Plscr1 phospholipid scramblase 1 located_in ISO
ISS
(PMID:20870722)
GO_REF:0000024
RGD
UniProt
PMID:20870722 GO_REF:0000024 NCBI chr 8:92,784,279...92,804,698
Ensembl chr 8:92,784,356...92,804,692
JBrowse link
G Podnl1 podocan-like 1 located_in ISO (MGI:5784978|PMID:21672516) RGD PMID:21672516 MGI:5784978 NCBI chr19:24,027,261...24,033,965
Ensembl chr19:24,027,297...24,033,846
JBrowse link
G Postn periostin located_in ISO (PMID:18450759)
(MGI:3804342|PMID:18450759)
RGD PMID:18450759 MGI:3804342 NCBI chr 2:138,527,714...138,559,098
Ensembl chr 2:138,527,696...138,559,099
JBrowse link
G Prg4 proteoglycan 4 is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr13:62,487,257...62,504,657
Ensembl chr13:62,487,257...62,504,119
JBrowse link
G Pxdn peroxidasin located_in ISO (PMID:19590037)
(MGI:3851833|PMID:19590037)
RGD PMID:19590037 MGI:3851833 NCBI chr 6:46,580,749...46,658,345
Ensembl chr 6:46,580,761...46,658,345
JBrowse link
G Rarres2 retinoic acid receptor responder 2 located_in ISO (PMID:19443732) RGD PMID:19443732 NCBI chr 4:77,522,549...77,525,733
Ensembl chr 4:77,522,535...77,525,556
JBrowse link
G Rpsa ribosomal protein SA IDA RGD PMID:11553521 RGD:2299067 NCBI chr 8:119,851,225...119,855,103
Ensembl chr 8:119,851,225...119,855,247
JBrowse link
G Serpine1 serpin family E member 1 located_in ISO
IEA
(PMID:1632457)
GO_REF:0000107
RGD
Ensembl
PMID:1632457 GO_REF:0000107 NCBI chr12:19,601,272...19,611,657
Ensembl chr12:19,601,272...19,611,657
JBrowse link
G Serpine2 serpin family E member 2 located_in ISO
IEA
(PMID:3279057)
GO_REF:0000107
RGD
Ensembl
PMID:3279057 GO_REF:0000107 NCBI chr 9:81,124,746...81,188,866
Ensembl chr 9:81,124,804...81,188,826
JBrowse link
G Sfrp1 secreted frizzled-related protein 1 located_in IEA
ISO
GO_REF:0000107
(PMID:10347172), (PMID:9192640)
Ensembl
RGD
PMID:9192640 PMID:10347172 GO_REF:0000107 NCBI chr16:68,575,763...68,613,905
Ensembl chr16:68,575,763...68,614,286
JBrowse link
G Sfrp2 secreted frizzled-related protein 2 located_in ISO (PMID:14709558) RGD PMID:14709558 NCBI chr 2:169,089,517...169,097,064
Ensembl chr 2:169,089,517...169,097,063
JBrowse link
G Snorc secondary ossification center associated regulator of chondrocyte maturation located_in ISO (MGI:6103145|PMID:28323137) RGD PMID:28323137 MGI:6103145 NCBI chr 9:88,140,419...88,145,891
Ensembl chr 9:88,140,419...88,145,891
JBrowse link
G Sod3 superoxide dismutase 3 located_in
colocalizes_with
IDA
ISO
(PMID:9699963)
(MGI:3610795|PMID:15528465)
RGD PMID:9699963 PMID:15528465 PMID:16372329 MGI:3610795, RGD:1581086 NCBI chr14:58,610,104...58,615,845
Ensembl chr14:58,609,958...58,615,990
JBrowse link
G Sparcl1 SPARC like 1 located_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr14:5,632,816...5,663,866
Ensembl chr14:5,632,569...5,663,865
JBrowse link
G Ssc5d scavenger receptor cysteine rich family member with 5 domains located_in ISO (MGI:4939978|PMID:21217009) RGD PMID:21217009 MGI:4939978 NCBI chr 1:68,891,942...68,910,462
Ensembl chr 1:68,891,949...68,909,743
JBrowse link
G Tgfb1 transforming growth factor, beta 1 located_in IDA
ISO
(PMID:23979707) RGD PMID:23979707 PMID:24224514 RGD:11073670 NCBI chr 1:81,196,532...81,212,848
Ensembl chr 1:81,196,532...81,212,847
JBrowse link
G Tgfb2 transforming growth factor, beta 2 located_in ISO
IEA
(PMID:18049952)
GO_REF:0000107
RGD
Ensembl
PMID:18049952 GO_REF:0000107 NCBI chr13:98,160,075...98,261,771
Ensembl chr13:98,160,087...98,261,405
JBrowse link
G Tgfb3 transforming growth factor, beta 3 located_in ISO (PMID:18049952) RGD PMID:18049952 NCBI chr 6:105,704,058...105,726,661
Ensembl chr 6:105,704,236...105,726,564
JBrowse link
G Tgfbr3 transforming growth factor beta receptor 3 located_in TAS PMID:1333192 BHF-UCL PMID:1333192 RGD:8554613 NCBI chr14:2,489,397...2,665,383
Ensembl chr14:2,489,397...2,663,341
JBrowse link
G Tgm4 transglutaminase 4 located_in
is_active_in
ISO
IBA
IEA
(PMID:20596668)
PMID:21873635
GO_REF:0000107
RGD
Ensembl
PMID:20596668 PMID:21873635 GO_REF:0000107, RGD:13792537 NCBI chr 8:122,689,429...122,726,463
Ensembl chr 8:122,689,429...122,726,463
JBrowse link
G Thbs1 thrombospondin 1 is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:105,056,286...105,071,445
Ensembl chr 3:105,056,292...105,071,440
JBrowse link
G Thbs2 thrombospondin 2 is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:55,670,394...55,699,789
Ensembl chr 1:55,670,394...55,699,789
JBrowse link
G Thbs3 thrombospondin 3 is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:174,621,788...174,633,594
Ensembl chr 2:174,621,812...174,633,594
JBrowse link
G Thbs4 thrombospondin 4 located_in
is_active_in
ISS
IBA
ISO
GO_REF:0000024
PMID:21873635
(MGI:5436396|PMID:22362893)
UniProt
RGD
PMID:22362893 PMID:21873635 GO_REF:0000024 MGI:5436396, RGD:13792537 NCBI chr 2:23,983,158...24,025,289
Ensembl chr 2:23,983,158...24,026,313
JBrowse link
G Tnc tenascin C located_in
is_active_in
ISO
IBA
(PMID:23658023)
PMID:21873635
(MGI:5582867|PMID:23658023)
RGD PMID:23658023 PMID:21873635 MGI:5582867, RGD:13792537 NCBI chr 5:77,375,851...77,460,712
Ensembl chr 5:77,375,851...77,460,624
JBrowse link
G Tnn tenascin N located_in
is_active_in
ISO
IBA
(PMID:19884327)
PMID:21873635
(MGI:3028459|PMID:14709716)
RGD PMID:14709716 PMID:19884327 PMID:21873635 MGI:3028459, RGD:13792537 NCBI chr13:72,319,160...72,386,362
Ensembl chr13:72,319,155...72,408,156
JBrowse link
G Tnr tenascin R located_in
is_active_in
ISO
IBA
(MGI:6830496|PMID:8244531)
PMID:21873635
RGD PMID:8244531 PMID:21873635 MGI:6830496, RGD:13792537 NCBI chr13:71,751,714...72,172,731
Ensembl chr13:72,091,585...72,167,641
JBrowse link
G Vcan versican IDA RGD PMID:12586779 RGD:1299255 NCBI chr 2:20,761,718...20,860,637
Ensembl chr 2:20,761,718...20,860,637
JBrowse link
G Vit vitrin is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:16,445,966...16,565,644
Ensembl chr 6:16,445,955...16,565,665
JBrowse link
G Vtn vitronectin is_active_in
located_in
IDA
IBA
ISO
PMID:21873635
(PMID:1632457)
RGD PMID:1632457 PMID:2426279 PMID:21873635 RGD:10003088, RGD:13792537 NCBI chr10:63,394,732...63,397,812
Ensembl chr10:63,394,719...63,397,810
JBrowse link
G Vwa2 von Willebrand factor A domain containing 2 is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:255,922,263...255,963,920
Ensembl chr 1:255,923,541...255,963,934
JBrowse link
G Vwf von Willebrand factor located_in IDA
IEA
ISO
GO_REF:0000104
(PMID:6754744)
UniProt
RGD
PMID:6754744 PMID:14762664 GO_REF:0000104, RGD:1599021 NCBI chr 4:158,360,152...158,491,539
Ensembl chr 4:158,360,152...158,491,539
JBrowse link
G Wnt2 Wnt family member 2 located_in ISO (PMID:15507471) RGD PMID:15507471 NCBI chr 4:46,328,408...46,374,673
Ensembl chr 4:46,333,998...46,374,402
JBrowse link
G Zg16 zymogen granule protein 16 located_in ISO
ISS
(PMID:17307141)
GO_REF:0000024
RGD
UniProt
PMID:17307141 GO_REF:0000024 NCBI chr 1:181,657,722...181,660,079
Ensembl chr 1:181,657,722...181,660,079
JBrowse link
G Zp1 zona pellucida glycoprotein 1 located_in
is_active_in
IEA
IBA
ISO
GO_REF:0000107
PMID:21873635
(MGI:2177349|PMID:11906903)
Ensembl
RGD
PMID:11906903 PMID:21873635 GO_REF:0000107 MGI:2177349, RGD:13792537 NCBI chr 1:207,560,881...207,567,261
Ensembl chr 1:207,560,881...207,567,261
JBrowse link
G Zp2 zona pellucida glycoprotein 2 located_in
is_active_in
ISS
IEA
IBA
ISO
GO_REF:0000024
GO_REF:0000107
PMID:21873635
(MGI:2177349|PMID:11906903)
UniProt
Ensembl
RGD
PMID:11906903 PMID:21873635 GO_REF:0000024 GO_REF:0000107 MGI:2177349, RGD:13792537 NCBI chr 1:174,513,507...174,525,288
Ensembl chr 1:174,513,511...174,525,288
JBrowse link
G Zp3 zona pellucida glycoprotein 3 located_in IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(MGI:2177349|PMID:11906903), (MGI:4943662|PMID:19052627)
(PMID:19246320)
Ensembl
UniProt
RGD
PMID:11906903 PMID:19052627 PMID:19246320 GO_REF:0000024 GO_REF:0000107 MGI:2177349 MGI:4943662 NCBI chr12:20,690,547...20,697,513
Ensembl chr12:20,690,547...20,697,513
JBrowse link
G Zp4 zona pellucida glycoprotein 4 is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:59,005,649...59,012,202
Ensembl chr17:59,005,649...59,012,202
JBrowse link
basement membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07018244.2 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 Ensembl chr15:39,788,233...39,788,853 JBrowse link
G Acan aggrecan located_in IEA
ISO
GO_REF:0000107
(MGI:3607633|PMID:16061471)
Ensembl
RGD
PMID:16061471 GO_REF:0000107 MGI:3607633 NCBI chr 1:132,981,034...133,044,416
Ensembl chr 1:132,981,582...133,043,627
JBrowse link
G Ache acetylcholinesterase located_in IEA
ISO
GO_REF:0000107
(MGI:71472|PMID:7885444)
Ensembl
RGD
PMID:7885444 GO_REF:0000107 MGI:71472 NCBI chr12:19,407,359...19,413,713
Ensembl chr12:19,407,360...19,413,651
JBrowse link
G Acta2 actin alpha 2, smooth muscle IDA MMO:0000538 RGD PMID:30476341 RGD:151893502 NCBI chr 1:231,746,527...231,759,307
Ensembl chr 1:231,746,548...231,759,554
JBrowse link
G Adamts1 ADAM metallopeptidase with thrombospondin type 1 motif, 1 located_in IEA
ISO
GO_REF:0000107
(MGI:3607633|PMID:16061471)
Ensembl
RGD
PMID:16061471 GO_REF:0000107 MGI:3607633 NCBI chr11:24,932,227...24,941,068
Ensembl chr11:24,931,761...24,941,103
JBrowse link
G Agrn agrin located_in IDA
ISO
ISS
IEA
(MGI:3807344|PMID:18757743), (MGI:75217|PMID:7670489)
(MGI:1891559|PMID:11018052)
GO_REF:0000024
GO_REF:0000107
(PMID:9405491)
RGD
UniProt
Ensembl
PMID:7670489 PMID:9405491 PMID:11018052 PMID:18757743 PMID:15711988 GO_REF:0000024 GO_REF:0000107 MGI:1891559 MGI:3807344 MGI:75217 RGD:11556219 RGD:150520179, RGD:1578369 NCBI chr 5:166,749,306...166,782,212
Ensembl chr 5:166,749,310...166,786,003
JBrowse link
G Alb albumin IDA RGD PMID:1723977 RGD:1625719 NCBI chr14:17,607,397...17,622,814
Ensembl chr14:17,607,381...17,622,836
JBrowse link
G Amelx amelogenin, X-linked located_in ISO (MGI:3807344|PMID:18757743) RGD PMID:18757743 MGI:3807344 NCBI chr  X:25,076,362...25,087,660
Ensembl chr  X:25,076,362...25,087,660
JBrowse link
G Amtn amelotin located_in
is_active_in
IDA
IBA
ISO
PMID:16787391
PMID:21873635
(MGI:3696589|PMID:16787391)
RGD PMID:16787391 PMID:16787391 PMID:21873635 MGI:3696589, RGD:2304068, RGD:13792537 NCBI chr14:19,648,624...19,661,181
Ensembl chr14:19,648,625...19,661,181
JBrowse link
G Ang angiogenin located_in ISO (PMID:15166501) RGD PMID:15166501 NCBI chr15:24,317,733...24,323,361 JBrowse link
G Anxa2 annexin A2 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 8:70,105,268...70,141,663
Ensembl chr 8:70,105,253...70,141,658
JBrowse link
G Atrn attractin is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:118,110,320...118,244,326
Ensembl chr 3:118,110,229...118,244,322
JBrowse link
G Atrnl1 attractin like 1 is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:256,670,976...257,219,291
Ensembl chr 1:256,670,627...257,213,197
JBrowse link
G Cask calcium/calmodulin dependent serine protein kinase colocalizes_with
part_of
ISO (PMID:18664494)
(MGI:3810856|PMID:18664494)
RGD PMID:18664494 MGI:3810856 NCBI chr  X:8,899,500...9,243,014
Ensembl chr  X:8,899,833...9,238,694
JBrowse link
G Ccdc80 coiled-coil domain containing 80 located_in
is_active_in
ISO
IBA
(MGI:3807344|PMID:18757743)
PMID:21873635
RGD PMID:18757743 PMID:21873635 MGI:3807344, RGD:13792537 NCBI chr11:55,685,165...55,718,827
Ensembl chr11:55,685,872...55,719,137
JBrowse link
G Cd151 CD151 molecule (Raph blood group) part_of ISO (PMID:23302890) RGD PMID:23302890 NCBI chr 1:196,564,744...196,568,753
Ensembl chr 1:196,565,181...196,568,753
JBrowse link
G Col15a1 collagen type XV alpha 1 chain located_in ISO (MGI:3807344|PMID:18757743) RGD PMID:18757743 MGI:3807344 NCBI chr 5:61,501,963...61,607,591
Ensembl chr 5:61,501,963...61,607,591
JBrowse link
G Col18a1 collagen type XVIII alpha 1 chain located_in ISO (MGI:2450496|PMID:12588956), (MGI:3054601|PMID:15254016), (MGI:3807344|PMID:18757743), (MGI:4397493|PMID:19651211), (MGI:76276|PMID:7568013) RGD PMID:7568013 PMID:12588956 PMID:15254016 PMID:18757743 PMID:19651211 MGI:2450496 MGI:3054601 MGI:3807344 MGI:4397493 MGI:76276 NCBI chr20:11,474,104...11,582,593
Ensembl chr20:11,474,104...11,582,593
JBrowse link
G Col28a1 collagen type XXVIII alpha 1 chain located_in ISO (MGI:3624169|PMID:16330543), (MGI:4868179|PMID:20830809) RGD PMID:16330543 PMID:20830809 MGI:3624169 MGI:4868179 NCBI chr 4:36,069,980...36,223,128
Ensembl chr 4:36,069,970...36,223,220
JBrowse link
G Col2a1 collagen type II alpha 1 chain located_in ISO (MGI:1932704|PMID:11273670) RGD PMID:11273670 MGI:1932704 NCBI chr 7:129,098,489...129,127,620
Ensembl chr 7:129,098,786...129,127,546
JBrowse link
G Col4a1 collagen type IV alpha 1 chain located_in
is_active_in
ISO
IBA
(MGI:2149189|PMID:11511678), (MGI:2157737|PMID:11732842), (MGI:3579951|PMID:15895400), (MGI:3776221|PMID:16041630), (MGI:3807344|PMID:18757743)
PMID:21873635
RGD PMID:11511678 PMID:11732842 PMID:15895400 PMID:16041630 PMID:18757743 More... MGI:2149189 MGI:2157737 MGI:3579951 MGI:3776221 MGI:3807344, RGD:13792537 NCBI chr16:78,183,533...78,294,412
Ensembl chr16:78,183,533...78,294,412
JBrowse link
G Col4a2 collagen type IV alpha 2 chain located_in ISO (MGI:2157737|PMID:11732842), (MGI:3776221|PMID:16041630), (MGI:3807344|PMID:18757743) RGD PMID:11732842 PMID:16041630 PMID:18757743 MGI:2157737 MGI:3776221 MGI:3807344 RGD:11556219 RGD:150520179 NCBI chr16:78,047,591...78,183,360
Ensembl chr16:78,047,602...78,183,839
JBrowse link
G Col4a3 collagen type IV alpha 3 chain located_in
is_active_in
ISO
IBA
(PMID:10766752)
PMID:21873635
(MGI:2157737|PMID:11732842), (MGI:3776221|PMID:16041630), (MGI:3807344|PMID:18757743)
RGD PMID:10766752 PMID:11732842 PMID:16041630 PMID:18757743 PMID:21873635 MGI:2157737 MGI:3776221 MGI:3807344, RGD:13792537 NCBI chr 9:83,875,958...84,004,955
Ensembl chr 9:83,875,561...84,001,895
JBrowse link
G Col4a4 collagen type IV alpha 4 chain located_in
is_active_in
ISO
IBA
(PMID:2211832)
PMID:21873635
(MGI:1095193|PMID:9264260), (MGI:1347142|PMID:10534397), (MGI:2157737|PMID:11732842), (MGI:3850913|PMID:19275937)
RGD PMID:2211832 PMID:9264260 PMID:10534397 PMID:11732842 PMID:19275937 More... MGI:1095193 MGI:1347142 MGI:2157737 MGI:3850913, RGD:13792537 NCBI chr 9:83,833,173...83,875,436
Ensembl chr 9:83,755,515...83,875,876
JBrowse link
G Col4a5 collagen type IV alpha 5 chain located_in
is_active_in
ISO
IBA
(MGI:1095193|PMID:9264260), (MGI:1347142|PMID:10534397), (MGI:2157737|PMID:11732842), (MGI:3807344|PMID:18757743), (MGI:3850913|PMID:19275937), (MGI:71472|PMID:7885444)
PMID:21873635
RGD PMID:7885444 PMID:9264260 PMID:10534397 PMID:11732842 PMID:18757743 More... MGI:1095193 MGI:1347142 MGI:2157737 MGI:3807344 MGI:3850913 MGI:71472, RGD:13792537 NCBI chr  X:105,118,762...105,322,699
Ensembl chr  X:105,118,820...105,322,692
JBrowse link
G Col4a6 collagen type IV alpha 6 chain located_in ISO (MGI:1347142|PMID:10534397), (MGI:2157737|PMID:11732842), (MGI:3807344|PMID:18757743), (MGI:3850913|PMID:19275937) RGD PMID:10534397 PMID:11732842 PMID:18757743 PMID:19275937 MGI:1347142 MGI:2157737 MGI:3807344 MGI:3850913 NCBI chr  X:104,766,463...105,117,499
Ensembl chr  X:104,766,957...105,117,500
JBrowse link
G Col5a1 collagen type V alpha 1 chain located_in IEA
ISO
GO_REF:0000107
(MGI:3028449|PMID:14676276)
Ensembl
RGD
PMID:14676276 GO_REF:0000107 MGI:3028449 NCBI chr 3:11,208,429...11,356,715
Ensembl chr 3:11,208,512...11,354,588
JBrowse link
G Col6a1 collagen type VI alpha 1 chain is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr20:11,906,105...11,924,599
Ensembl chr20:11,905,957...11,924,597
JBrowse link
G Col7a1 collagen type VII alpha 1 chain located_in ISO (MGI:3807344|PMID:18757743), (MGI:4397493|PMID:19651211) RGD PMID:18757743 PMID:19651211 MGI:3807344 MGI:4397493 NCBI chr 8:109,604,877...109,637,252
Ensembl chr 8:109,604,861...109,637,252
JBrowse link
G Col9a1 collagen type IX alpha 1 chain is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 9:26,585,034...26,668,222
Ensembl chr 9:26,585,034...26,668,213
JBrowse link
G Col9a3 collagen type IX alpha 3 chain is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:167,711,776...167,734,468
Ensembl chr 3:167,711,840...167,734,465
JBrowse link
G Colq collagen like tail subunit of asymmetric acetylcholinesterase TAS RGD PMID:12684510 RGD:728369 NCBI chr16:6,731,850...6,824,973
Ensembl chr16:6,731,858...6,787,107
JBrowse link
G Cst3 cystatin C IDA RGD PMID:15872057 RGD:2306505 NCBI chr 3:136,336,923...136,340,796
Ensembl chr 3:136,336,920...136,340,822
JBrowse link
G Dag1 dystroglycan 1 located_in
is_active_in
ISO
IBA
(PMID:19348877)
PMID:21873635
(MGI:1202096|PMID:9524190), (MGI:2156962|PMID:11798066), (MGI:5470500|PMID:23217742)
RGD PMID:9524190 PMID:11798066 PMID:19348877 PMID:23217742 PMID:21873635 MGI:1202096 MGI:2156962 MGI:5470500, RGD:13792537 NCBI chr 8:108,890,926...108,955,611
Ensembl chr 8:108,890,929...108,952,325
JBrowse link
G Dlg1 discs large MAGUK scaffold protein 1 located_in IEA
ISO
GO_REF:0000107
(MGI:5523731|PMID:24191021)
Ensembl
RGD
PMID:24191021 GO_REF:0000107 MGI:5523731 NCBI chr11:68,911,883...69,103,230
Ensembl chr11:68,911,883...69,102,689
JBrowse link
G Efemp1 EGF containing fibulin extracellular matrix protein 1 IDA RGD PMID:18803302 RGD:10401659 NCBI chr14:102,610,813...102,690,027
Ensembl chr14:102,610,908...102,690,018
JBrowse link
G Efemp2 EGF containing fibulin extracellular matrix protein 2 located_in ISO (MGI:3709425|PMID:17324935) RGD PMID:17324935 MGI:3709425 NCBI chr 1:202,781,692...202,789,784
Ensembl chr 1:202,781,665...202,789,414
JBrowse link
G Efna5 ephrin A5 located_in ISO (MGI:5471910|PMID:23242526) RGD PMID:23242526 MGI:5471910 NCBI chr 9:102,316,753...102,595,480
Ensembl chr 9:102,320,295...102,597,413
JBrowse link
G Egfl6 EGF-like-domain, multiple 6 located_in ISO (MGI:3807344|PMID:18757743) RGD PMID:18757743 MGI:3807344 NCBI chr  X:27,884,087...27,942,044
Ensembl chr  X:27,884,125...27,942,044
JBrowse link
G Egflam EGF-like, fibronectin type III and laminin G domains located_in
is_active_in
ISO
IBA
(MGI:3807344|PMID:18757743)
PMID:21873635
RGD PMID:18757743 PMID:21873635 MGI:3807344, RGD:13792537 NCBI chr 2:56,301,945...56,476,665
Ensembl chr 2:56,302,566...56,476,298
JBrowse link
G Entpd1 ectonucleoside triphosphate diphosphohydrolase 1 located_in ISO (MGI:2178511|PMID:11929769) RGD PMID:11929769 MGI:2178511 NCBI chr 1:239,425,515...239,552,323
Ensembl chr 1:239,425,430...239,552,317
JBrowse link
G Entpd2 ectonucleoside triphosphate diphosphohydrolase 2 located_in IEA
ISO
GO_REF:0000107
(MGI:2178511|PMID:11929769)
Ensembl
RGD
PMID:11929769 GO_REF:0000107 MGI:2178511 NCBI chr 3:8,213,575...8,219,094
Ensembl chr 3:8,213,663...8,226,866
JBrowse link
G Fbln1 fibulin 1 located_in ISO (MGI:3607633|PMID:16061471) RGD PMID:16061471 MGI:3607633 NCBI chr 7:116,310,582...116,390,075
Ensembl chr 7:116,310,582...116,390,075
JBrowse link
G Fbn1 fibrillin 1 located_in ISO (PMID:3536967) RGD PMID:3536967 NCBI chr 3:112,554,257...112,750,835
Ensembl chr 3:112,554,925...112,750,889
JBrowse link
G Fgf9 fibroblast growth factor 9 IDA ovarian granulosa cells and follicles; seminiferous tubules RGD PMID:17494997 RGD:2289861 NCBI chr15:32,208,993...32,254,952
Ensembl chr15:32,210,074...32,253,309
JBrowse link
G Fn1 fibronectin 1 located_in IDA
ISO
IEA
(MGI:2149189|PMID:11511678), (MGI:5523731|PMID:24191021), (MGI:77581|PMID:8984825)
GO_REF:0000107
RGD
Ensembl
PMID:8984825 PMID:11511678 PMID:24191021 PMID:14656002 GO_REF:0000107 MGI:2149189 MGI:5523731 MGI:77581, RGD:1578551 NCBI chr 9:73,196,044...73,264,695
Ensembl chr 9:73,196,044...73,264,678
JBrowse link
G Fras1 Fraser extracellular matrix complex subunit 1 located_in ISO (MGI:3054130|PMID:15345741), (MGI:3654854|PMID:16880404), (MGI:3697950|PMID:17251066), (MGI:3766685|PMID:17596926), (MGI:3797592|PMID:15623520), (MGI:3807344|PMID:18757743) RGD PMID:15345741 PMID:15623520 PMID:16880404 PMID:17251066 PMID:17596926 More... MGI:3054130 MGI:3654854 MGI:3697950 MGI:3766685 MGI:3797592 MGI:3807344 NCBI chr14:12,791,407...13,200,862
Ensembl chr14:12,793,599...13,200,726
JBrowse link
G Frem1 Fras1 related extracellular matrix 1 located_in ISO (MGI:3654854|PMID:16880404), (MGI:3697950|PMID:17251066), (MGI:3766685|PMID:17596926), (MGI:3807344|PMID:18757743) RGD PMID:16880404 PMID:17251066 PMID:17596926 PMID:18757743 MGI:3654854 MGI:3697950 MGI:3766685 MGI:3807344 NCBI chr 5:97,321,275...97,469,523
Ensembl chr 5:97,322,538...97,469,543
JBrowse link
G Frem2 FRAS1 related extracellular matrix 2 located_in ISO (MGI:3654854|PMID:16880404), (MGI:3697950|PMID:17251066), (MGI:3766685|PMID:17596926) RGD PMID:16880404 PMID:17251066 PMID:17596926 MGI:3654854 MGI:3697950 MGI:3766685 NCBI chr 2:137,602,784...137,740,785
Ensembl chr 2:137,602,784...137,740,785
JBrowse link
G Frem3 FRAS1 related extracellular matrix 3 located_in ISO (MGI:3697950|PMID:17251066), (MGI:3721022|PMID:17462874), (MGI:3766685|PMID:17596926) RGD PMID:17251066 PMID:17462874 PMID:17596926 MGI:3697950 MGI:3721022 MGI:3766685 NCBI chr19:27,308,469...27,366,771
Ensembl chr19:27,308,469...27,366,771
JBrowse link
G Gsto1 glutathione S-transferase omega 1 IDA RGD PMID:11311527 RGD:5490519 NCBI chr 1:246,721,089...246,731,228
Ensembl chr 1:246,721,221...246,731,468
JBrowse link
G Hmcn1 hemicentin 1 located_in ISO (MGI:3717022|PMID:17015624), (MGI:6368983|PMID:29488390), (MGI:6432649|PMID:32035013), (MGI:6762317|PMID:34504132) RGD PMID:17015624 PMID:29488390 PMID:32035013 PMID:34504132 MGI:3717022 MGI:6368983 MGI:6432649 MGI:6762317 NCBI chr13:62,615,461...63,084,524
Ensembl chr13:62,615,461...63,084,524
JBrowse link
G Hmcn2 hemicentin 2 located_in ISO (MGI:3717022|PMID:17015624) RGD PMID:17015624 MGI:3717022 NCBI chr 3:14,588,353...14,738,320
Ensembl chr 3:14,588,662...14,738,025
JBrowse link
G Hspg2 heparan sulfate proteoglycan 2 is_active_in
located_in
ISO
IBA
TAS
PMID:21873635
PMID:8621634
(MGI:1338595|PMID:10352025), (MGI:1349497|PMID:10579729), (MGI:2157278|PMID:11787818), (MGI:2158601|PMID:11802174), (MGI:2450496|PMID:12588956), (MGI:3525426|PMID:15381701), (MGI:3579932|PMID:15928325), (MGI:3579951|PMID:15895400), (MGI:3807344|PMID:18757743), (MGI:75217|PMID:7670489)
RGD PMID:7670489 PMID:10352025 PMID:10579729 PMID:11787818 PMID:11802174 More... MGI:1338595 MGI:1349497 MGI:2157278 MGI:2158601 MGI:2450496 MGI:3525426 MGI:3579932 MGI:3579951 MGI:3807344 MGI:75217 RGD:11556219 RGD:150520179, RGD:13792537, RGD:12793010 NCBI chr 5:149,677,437...149,778,594
Ensembl chr 5:149,677,476...149,778,594
JBrowse link
G Itga6 integrin subunit alpha 6 located_in ISO (MGI:1202096|PMID:9524190) RGD PMID:9524190 MGI:1202096 NCBI chr 3:56,604,512...56,689,428
Ensembl chr 3:56,617,268...56,689,428
JBrowse link
G Itgb1 integrin subunit beta 1 IDA RGD PMID:9202984 PMID:18596883 RGD:1581320, RGD:2325689 NCBI chr19:56,705,123...56,753,199
Ensembl chr19:56,705,171...56,753,195
JBrowse link
G Itgb4 integrin subunit beta 4 located_in IEA
ISO
GO_REF:0000107
(MGI:3692798|PMID:17011173)
Ensembl
RGD
PMID:17011173 GO_REF:0000107 MGI:3692798 NCBI chr10:101,206,657...101,243,012
Ensembl chr10:101,206,665...101,243,012
JBrowse link
G Lad1 ladinin 1 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr13:47,249,605...47,263,967
Ensembl chr13:47,249,605...47,263,967
JBrowse link
G Lama1 laminin subunit alpha 1 located_in
is_active_in
ISO
IBA
(PMID:10964500), (PMID:2099832)
PMID:21873635
(MGI:1095193|PMID:9264260), (MGI:1097278|PMID:9299121), (MGI:1928005|PMID:10639489), (MGI:2149189|PMID:11511678), (MGI:2181263|PMID:12051813), (MGI:2655007|PMID:12670870), (MGI:3579951|PMID:15895400), (MGI:3581325|PMID:15923608), (MGI:3610934|PMID:12631063), (MGI:3618677|PMID:16467571), (MGI:3807344|PMID:18757743), (MGI:4397493|PMID:19651211), (MGI:4441265|PMID:16631359), (MGI:4946462|PMID:21146513), (MGI:52425|PMID:1292752), (MGI:80991|PMID:1907584)
RGD PMID:1292752 PMID:1907584 PMID:2099832 PMID:9264260 PMID:9299121 More... MGI:1095193 MGI:1097278 MGI:1928005 MGI:2149189 MGI:2181263 MGI:2655007 MGI:3579951 MGI:3581325 MGI:3610934 MGI:3618677 MGI:3807344 MGI:4397493 MGI:4441265 MGI:4946462 MGI:52425 MGI:80991, RGD:13792537 NCBI chr 9:107,692,770...107,816,847
Ensembl chr 9:107,692,770...107,817,478
JBrowse link
G Lama2 laminin subunit alpha 2 is_active_in
located_in
IDA
IBA
ISO
PMID:21873635
(MGI:1095193|PMID:9264260), (MGI:1101275|PMID:9396756), (MGI:1202096|PMID:9524190), (MGI:2181263|PMID:12051813), (MGI:3579951|PMID:15895400), (MGI:3807344|PMID:18757743)
(PMID:14557481), (PMID:2099832)
RGD PMID:2099832 PMID:9264260 PMID:9396756 PMID:9524190 PMID:12051813 More... MGI:1095193 MGI:1101275 MGI:1202096 MGI:2181263 MGI:3579951 MGI:3807344, RGD:1600203, RGD:13792537 NCBI chr 1:17,672,675...18,320,641
Ensembl chr 1:17,672,536...18,320,530
JBrowse link
G Lama3 laminin subunit alpha 3 located_in
is_active_in
ISO
IBA
(MGI:1095193|PMID:9264260), (MGI:2181263|PMID:12051813), (MGI:3579951|PMID:15895400), (MGI:3807344|PMID:18757743)
PMID:21873635
RGD PMID:9264260 PMID:12051813 PMID:15895400 PMID:18757743 PMID:21873635 MGI:1095193 MGI:2181263 MGI:3579951 MGI:3807344, RGD:13792537 NCBI chr18:3,523,168...3,751,722
Ensembl chr18:3,523,133...3,751,353
JBrowse link
G Lama4 laminin subunit alpha 4 located_in ISO (PMID:14557481)
(MGI:1098373|PMID:9346933), (MGI:1101275|PMID:9396756), (MGI:2182185|PMID:9614228), (MGI:3579951|PMID:15895400), (MGI:3807344|PMID:18757743)
RGD PMID:9346933 PMID:9396756 PMID:9614228 PMID:14557481 PMID:15895400 More... MGI:1098373 MGI:1101275 MGI:2182185 MGI:3579951 MGI:3807344 NCBI chr20:42,392,268...42,533,347
Ensembl chr20:42,392,268...42,533,347
JBrowse link
G Lama5 laminin subunit alpha 5 located_in
is_active_in
ISO
IBA
(PMID:14557481)
(MGI:1352792|PMID:10651091)
(MGI:1097278|PMID:9299121), (MGI:1101275|PMID:9396756), (MGI:1278097|PMID:9735344), (MGI:2150219|PMID:11507772), (MGI:2181263|PMID:12051813), (MGI:2182206|PMID:8707838), (MGI:2662649|PMID:12743034), (MGI:2670559|PMID:12921739), (MGI:2678847|PMID:14568553), (MGI:3579951|PMID:15895400), (MGI:3664526|PMID:16886065), (MGI:3807344|PMID:18757743), (MGI:4397493|PMID:19651211), (MGI:5427748|PMID:22665518)
PMID:21873635
RGD PMID:8707838 PMID:9299121 PMID:9396756 PMID:9735344 PMID:10651091 More... MGI:1097278 MGI:1101275 MGI:1278097 MGI:1352792 MGI:2150219 MGI:2181263 MGI:2182206 MGI:2662649 MGI:2670559 MGI:2678847 MGI:3579951 MGI:3664526 MGI:3807344 MGI:4397493 MGI:5427748, RGD:13792537 NCBI chr 3:167,270,296...167,318,370
Ensembl chr 3:167,270,296...167,318,451
JBrowse link
G Lamb1 laminin subunit beta 1 located_in ISO (PMID:14557481), (PMID:2099832)
(MGI:1095193|PMID:9264260), (MGI:1101275|PMID:9396756), (MGI:2662649|PMID:12743034), (MGI:3045829|PMID:15102706), (MGI:3579951|PMID:15895400), (MGI:3610934|PMID:12631063), (MGI:3776221|PMID:16041630), (MGI:3807344|PMID:18757743), (MGI:4441265|PMID:16631359), (MGI:52425|PMID:1292752)
RGD PMID:1292752 PMID:2099832 PMID:9264260 PMID:9396756 PMID:12631063 More... MGI:1095193 MGI:1101275 MGI:2662649 MGI:3045829 MGI:3579951 MGI:3610934 MGI:3776221 MGI:3807344 MGI:4441265 MGI:52425 NCBI chr 6:47,835,492...47,902,585
Ensembl chr 6:47,835,525...47,902,585
JBrowse link
G Lamb2 laminin subunit beta 2 located_in ISO
IEA
(PMID:10964500), (PMID:14557481), (PMID:2099832)
(MGI:3776221|PMID:16041630), (MGI:75217|PMID:7670489)
GO_REF:0000044
RGD
UniProt
PMID:2099832 PMID:7670489 PMID:10964500 PMID:14557481 PMID:16041630 GO_REF:0000044 MGI:3776221 MGI:75217 NCBI chr 8:109,178,367...109,190,552
Ensembl chr 8:109,178,409...109,190,549
JBrowse link
G Lamb3 laminin subunit beta 3 located_in ISO (MGI:1095193|PMID:9264260), (MGI:3807344|PMID:18757743), (MGI:65651|PMID:8012114) RGD PMID:8012114 PMID:9264260 PMID:18757743 MGI:1095193 MGI:3807344 MGI:65651 NCBI chr13:104,833,810...104,875,405
Ensembl chr13:104,833,873...104,875,405
JBrowse link
G Lamc1 laminin subunit gamma 1 located_in
is_active_in
ISO
IBA
(PMID:14557481), (PMID:15159456), (PMID:22952693)
PMID:21873635
(MGI:1095193|PMID:9264260), (MGI:1101275|PMID:9396756), (MGI:2181263|PMID:12051813), (MGI:2662649|PMID:12743034), (MGI:3579951|PMID:15895400), (MGI:3807344|PMID:18757743), (MGI:52425|PMID:1292752), (MGI:75217|PMID:7670489)
RGD PMID:1292752 PMID:7670489 PMID:9264260 PMID:9396756 PMID:12051813 More... MGI:1095193 MGI:1101275 MGI:2181263 MGI:2662649 MGI:3579951 MGI:3807344 MGI:52425 MGI:75217, RGD:13792537 NCBI chr13:65,374,372...65,501,492
Ensembl chr13:65,374,372...65,501,492
JBrowse link
G Lamc2 laminin subunit gamma 2 located_in
is_active_in
ISO
IBA
(MGI:1095193|PMID:9264260), (MGI:2156955|PMID:11733994), (MGI:3579951|PMID:15895400), (MGI:3807344|PMID:18757743)
PMID:21873635
RGD PMID:9264260 PMID:11733994 PMID:15895400 PMID:18757743 PMID:21873635 MGI:1095193 MGI:2156955 MGI:3579951 MGI:3807344, RGD:13792537 NCBI chr13:65,284,664...65,344,200
Ensembl chr13:65,284,664...65,344,200
JBrowse link
G Lamc3 laminin subunit gamma 3 located_in
is_active_in
ISO
IBA
(MGI:3807344|PMID:18757743)
PMID:21873635
RGD PMID:18757743 PMID:21873635 MGI:3807344, RGD:13792537 NCBI chr 3:15,165,220...15,226,697
Ensembl chr 3:15,165,220...15,226,697
JBrowse link
G Loxl1 lysyl oxidase-like 1 IDA RGD PMID:22382377 RGD:7394733 NCBI chr 8:58,692,592...58,716,356
Ensembl chr 8:58,692,593...58,716,356
JBrowse link
G Loxl2 lysyl oxidase-like 2 located_in IDA PMID:21835952 UniProt PMID:21835952 RGD:8553848 NCBI chr15:44,683,449...44,773,067
Ensembl chr15:44,683,880...44,773,067
JBrowse link
G Matn2 matrilin 2 located_in ISO (MGI:3850905|PMID:19295126) RGD PMID:19295126 MGI:3850905 NCBI chr 7:65,494,996...65,644,613
Ensembl chr 7:65,494,834...65,645,113
JBrowse link
G Megf9 multiple EGF-like-domains 9 located_in
is_active_in
ISO
IBA
(MGI:3699792|PMID:16981854)
PMID:21873635
RGD PMID:16981854 PMID:21873635 MGI:3699792, RGD:13792537 NCBI chr 5:83,993,565...84,105,622
Ensembl chr 5:83,993,565...84,105,622
JBrowse link
G Mmrn2 multimerin 2 located_in ISO (MGI:3807344|PMID:18757743) RGD PMID:18757743 MGI:3807344 NCBI chr16:9,705,925...9,727,405
Ensembl chr16:9,705,892...9,727,405
JBrowse link
G Nid1 nidogen 1 located_in ISO
IEA
(PMID:22952693)
GO_REF:0000044
PR:P02468|PR:P37889|PR:Q05793|UniProtKB:P02462|UniProtKB:P08572 (MGI:1928005|PMID:10639489), (MGI:2181263|PMID:12051813), (MGI:2387502|PMID:12243745), (MGI:2450496|PMID:12588956), (MGI:2680880|PMID:14566019), (MGI:3579951|PMID:15895400), (MGI:3624169|PMID:16330543), (MGI:3766685|PMID:17596926), (MGI:3807344|PMID:18757743), (MGI:75217|PMID:7670489)
RGD
UniProt
PMID:7670489 PMID:10639489 PMID:12051813 PMID:12243745 PMID:12588956 More... GO_REF:0000044 MGI:1928005 MGI:2181263 MGI:2387502 MGI:2450496 MGI:2680880 MGI:3579951 MGI:3624169 MGI:3766685 MGI:3807344 MGI:75217 NCBI chr17:86,085,046...86,158,277
Ensembl chr17:86,085,077...86,158,267
JBrowse link
G Nid2 nidogen 2 located_in
is_active_in
IEA
IBA
ISO
GO_REF:0000044
PMID:21873635
PR:P02468|PR:P37889|PR:Q05793|UniProtKB:P02462|UniProtKB:P08572 (MGI:2387502|PMID:12243745), (MGI:3579951|PMID:15895400), (MGI:3807344|PMID:18757743)
(PMID:22952693)
UniProt
RGD
PMID:12243745 PMID:15895400 PMID:18757743 PMID:22952693 PMID:21873635 GO_REF:0000044 MGI:2387502 MGI:3579951 MGI:3807344, RGD:13792537 NCBI chr15:4,458,082...4,513,808
Ensembl chr15:4,458,084...4,513,843
JBrowse link
G Nphs1 NPHS1 adhesion molecule, nephrin IDA MMO:0000686 RGD PMID:21876538 RGD:38599163 NCBI chr 1:85,720,812...85,749,079
Ensembl chr 1:85,720,812...85,749,078
JBrowse link
G Npnt nephronectin located_in ISO (MGI:3807344|PMID:18757743), (MGI:4947862|PMID:21335239) RGD PMID:18757743 PMID:21335239 MGI:3807344 MGI:4947862 NCBI chr 2:221,391,151...221,459,527
Ensembl chr 2:221,391,153...221,459,401
JBrowse link
G Ntn1 netrin 1 located_in
is_active_in
IEA
IBA
ISO
GO_REF:0000107
PMID:21873635
(MGI:3807344|PMID:18757743)
Ensembl
RGD
PMID:18757743 PMID:21873635 GO_REF:0000107 MGI:3807344, RGD:13792537 NCBI chr10:52,899,933...53,098,591
Ensembl chr10:52,899,934...53,085,326
JBrowse link
G Ntn3 netrin 3 is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:13,236,905...13,240,001
Ensembl chr10:13,236,905...13,240,001
JBrowse link
G Ntn4 netrin 4 located_in ISO (MGI:3044539|PMID:15186747), (MGI:3722516|PMID:17588941), (MGI:3807344|PMID:18757743) RGD PMID:15186747 PMID:17588941 PMID:18757743 MGI:3044539 MGI:3722516 MGI:3807344 NCBI chr 7:28,186,611...28,300,390
Ensembl chr 7:28,186,611...28,300,390
JBrowse link
G Ntn5 netrin 5 is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:96,156,985...96,165,997
Ensembl chr 1:96,156,985...96,165,630
JBrowse link
G P3h1 prolyl 3-hydroxylase 1 located_in IDA PMID:10455179 MGI PMID:10455179 RGD:633221 NCBI chr 5:132,841,868...132,856,664
Ensembl chr 5:132,841,928...132,856,659
JBrowse link
G P3h2 prolyl 3-hydroxylase 2 located_in ISS
ISO
IEA
GO_REF:0000024
(MGI:3805645|PMID:18487197)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:18487197 GO_REF:0000024 GO_REF:0000107 MGI:3805645 NCBI chr11:74,634,267...74,775,422
Ensembl chr11:74,634,267...74,775,421
JBrowse link
G Papln papilin, proteoglycan-like sulfated glycoprotein located_in ISO (MGI:3807344|PMID:18757743) RGD PMID:18757743 MGI:3807344 NCBI chr 6:103,398,166...103,432,199
Ensembl chr 6:103,398,838...103,432,206
JBrowse link
G Ptn pleiotrophin IDA RGD PMID:9990431 RGD:10044215 NCBI chr 4:65,293,731...65,375,572
Ensembl chr 4:65,293,734...65,375,456
JBrowse link
G Pxdn peroxidasin part_of
located_in
ISO (PMID:22842973)
(MGI:6870970|PMID:22842973)
RGD PMID:22842973 MGI:6870970 NCBI chr 6:46,580,749...46,658,345
Ensembl chr 6:46,580,761...46,658,345
JBrowse link
G Rell2 RELT-like 2 located_in ISO (MGI:3807344|PMID:18757743) RGD PMID:18757743 MGI:3807344 NCBI chr18:29,789,996...29,793,986
Ensembl chr18:29,790,415...29,793,986
JBrowse link
G Rpsa ribosomal protein SA IDA RGD PMID:11553521 RGD:2299067 NCBI chr 8:119,851,225...119,855,103
Ensembl chr 8:119,851,225...119,855,247
JBrowse link
G Runx1 RUNX family transcription factor 1 located_in ISO (MGI:3692798|PMID:17011173) RGD PMID:17011173 MGI:3692798 NCBI chr11:31,839,880...32,074,427
Ensembl chr11:31,843,764...32,074,542
JBrowse link
G Serpinf1 serpin family F member 1 IDA RGD PMID:15616035 RGD:1359799 NCBI chr10:60,250,198...60,262,593
Ensembl chr10:60,249,708...60,262,646
JBrowse link
G Smc3 structural maintenance of chromosomes 3 located_in IDA
TAS
PMID:8621634 RGD
CAFA
PMID:9015313 PMID:8621634 RGD:61563, RGD:12793010 NCBI chr 1:252,601,422...252,644,522
Ensembl chr 1:252,601,753...252,644,522
JBrowse link
G Smoc1 SPARC related modular calcium binding 1 located_in
is_active_in
ISO
IBA
(MGI:3807344|PMID:18757743)
PMID:21873635
RGD PMID:18757743 PMID:21873635 MGI:3807344, RGD:13792537 NCBI chr 6:100,701,330...100,897,441
Ensembl chr 6:100,701,346...100,862,699
JBrowse link
G Smoc2 SPARC related modular calcium binding 2 located_in
is_active_in
ISO
IBA
(MGI:3807344|PMID:18757743)
PMID:21873635
RGD PMID:18757743 PMID:21873635 MGI:3807344, RGD:13792537 NCBI chr 1:55,262,472...55,391,804
Ensembl chr 1:55,262,530...55,391,693
JBrowse link
G Sparc secreted protein acidic and cysteine rich located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr10:39,516,394...39,538,252
Ensembl chr10:39,516,406...39,538,396
JBrowse link
G Spn sialophorin located_in ISO (MGI:66056|PMID:7514104) RGD PMID:7514104 MGI:66056 NCBI chr 1:181,746,937...181,759,564
Ensembl chr 1:181,746,429...181,759,628
JBrowse link
G Tf transferrin IDA RGD PMID:1723977 RGD:1625719 NCBI chr 8:103,789,780...103,816,487
Ensembl chr 8:103,767,995...103,816,511
JBrowse link
G Tgfb2 transforming growth factor, beta 2 IDA RGD PMID:16479080 RGD:2302094 NCBI chr13:98,160,075...98,261,771
Ensembl chr13:98,160,087...98,261,405
JBrowse link
G Tgfbi transforming growth factor, beta induced IDA RGD PMID:12911551 RGD:1304421 NCBI chr17:7,955,603...7,984,903
Ensembl chr17:7,955,603...7,985,240
JBrowse link
G Thbs2 thrombospondin 2 located_in ISO (MGI:1860780|PMID:10669089) RGD PMID:10669089 MGI:1860780 NCBI chr 1:55,670,394...55,699,789
Ensembl chr 1:55,670,394...55,699,789
JBrowse link
G Thbs4 thrombospondin 4 located_in IEA
ISO
GO_REF:0000107
(PMID:17927980)
Ensembl
RGD
PMID:17927980 GO_REF:0000107 NCBI chr 2:23,983,158...24,025,289
Ensembl chr 2:23,983,158...24,026,313
JBrowse link
G Timp1 TIMP metallopeptidase inhibitor 1 located_in IDA
ISO
(MGI:2675517|PMID:12950084) RGD PMID:12950084 PMID:9579471 MGI:2675517, RGD:2290365 NCBI chr  X:1,212,969...1,217,714
Ensembl chr  X:1,212,972...1,217,664
JBrowse link
G Timp2 TIMP metallopeptidase inhibitor 2 located_in ISO (MGI:2675517|PMID:12950084) RGD PMID:12950084 MGI:2675517 NCBI chr10:103,541,199...103,590,611
Ensembl chr10:103,531,505...103,590,611
JBrowse link
G Timp3 TIMP metallopeptidase inhibitor 3 located_in IEA
ISO
GO_REF:0000107
(MGI:2675517|PMID:12950084)
Ensembl
RGD
PMID:12950084 GO_REF:0000107 MGI:2675517 NCBI chr 7:17,520,827...17,571,871
Ensembl chr 7:17,521,919...17,571,839
JBrowse link
G Tinag tubulointerstitial nephritis antigen located_in ISO (PMID:1762287) RGD PMID:1762287 NCBI chr 8:77,800,031...77,885,077
Ensembl chr 8:77,800,032...77,885,077
JBrowse link
G Tmeff1 transmembrane protein with EGF-like and two follistatin-like domains 1 is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:62,910,740...62,996,494
Ensembl chr 5:62,910,740...62,996,493
JBrowse link
G Tmeff2 transmembrane protein with EGF-like and two follistatin-like domains 2 is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 9:50,445,550...50,733,482
Ensembl chr 9:50,436,079...50,733,475
JBrowse link
G Tnc tenascin C located_in ISO (MGI:3832136|PMID:18950615), (MGI:61475|PMID:7687262), (MGI:85263|PMID:9013311) RGD PMID:7687262 PMID:9013311 PMID:18950615 MGI:3832136 MGI:61475 MGI:85263 NCBI chr 5:77,375,851...77,460,712
Ensembl chr 5:77,375,851...77,460,624
JBrowse link
G Ush2a usherin located_in
is_active_in
ISO
IEA
IBA
(PMID:12433396)
GO_REF:0000107
PMID:21873635
(MGI:3028449|PMID:14676276)
RGD
Ensembl
PMID:12433396 PMID:14676276 PMID:21873635 GO_REF:0000107 MGI:3028449, RGD:13792537 NCBI chr13:99,837,445...100,503,935
Ensembl chr13:99,837,445...100,503,922
JBrowse link
G Vegfa vascular endothelial growth factor A IDA RGD PMID:11940521 RGD:628330 NCBI chr 9:14,955,300...14,970,641
Ensembl chr 9:14,955,300...14,970,641
JBrowse link
G Vtn vitronectin IDA RGD PMID:11728964 RGD:10003096 NCBI chr10:63,394,732...63,397,812
Ensembl chr10:63,394,719...63,397,810
JBrowse link
G Vwa1 von Willebrand factor A domain containing 1 located_in ISO (MGI:3807344|PMID:18757743), (MGI:3807821|PMID:18314316) RGD PMID:18314316 PMID:18757743 MGI:3807344 MGI:3807821 NCBI chr 5:166,377,451...166,382,784
Ensembl chr 5:166,377,455...166,382,637
JBrowse link
G Vwa2 von Willebrand factor A domain containing 2 located_in
is_active_in
ISO
IBA
(MGI:4397493|PMID:19651211)
PMID:21873635
RGD PMID:19651211 PMID:21873635 MGI:4397493, RGD:13792537 NCBI chr 1:255,922,263...255,963,920
Ensembl chr 1:255,923,541...255,963,934
JBrowse link
G Vwc2 von Willebrand factor C domain containing 2 located_in ISO (MGI:3807344|PMID:18757743) RGD PMID:18757743 MGI:3807344 NCBI chr14:85,683,670...85,825,068
Ensembl chr14:85,684,414...85,818,524
JBrowse link
collagen type I trimer term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Col1a1 collagen type I alpha 1 chain part_of
located_in
ISO
IBA
(PMID:14976317), (PMID:17576241), (PMID:19932771)
(PMID:26848503), (PMID:28281531)
MGI:1857154 (MGI:66506|PMID:8018053), (MGI:73949|PMID:7790374)
PMID:21873635
RGD PMID:7790374 PMID:8018053 PMID:14976317 PMID:17576241 PMID:19932771 More... MGI:66506 MGI:73949, RGD:13792537 NCBI chr10:79,883,622...79,900,625
Ensembl chr10:79,883,622...79,900,624
JBrowse link
G Col1a2 collagen type I alpha 2 chain part_of
located_in
ISO
IEA
IBA
(PMID:17955022), (PMID:18375391), (PMID:19932771)
GO_REF:0000107
(PMID:26848503)
(MGI:68743|PMID:7825727)
PMID:21873635
RGD
Ensembl
PMID:7825727 PMID:17955022 PMID:18375391 PMID:19932771 PMID:26848503 More... GO_REF:0000107 MGI:68743, RGD:13792537 NCBI chr 4:32,563,938...32,598,868
Ensembl chr 4:32,563,381...32,598,867
JBrowse link
collagen type II trimer term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Col2a1 collagen type II alpha 1 chain part_of ISO
IBA
(PMID:8660302)
PMID:21873635
MGI:1857275 (MGI:1330638|PMID:9880238), (MGI:55057|PMID:7276808)
RGD PMID:7276808 PMID:8660302 PMID:9880238 PMID:21873635 MGI:1330638 MGI:55057, RGD:13792537 NCBI chr 7:129,098,489...129,127,620
Ensembl chr 7:129,098,786...129,127,546
JBrowse link
collagen type III trimer term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Col3a1 collagen type III alpha 1 chain part_of ISO (PMID:17576241), (PMID:19932771), (PMID:7487954)
(MGI:68743|PMID:7825727)
RGD PMID:7487954 PMID:7825727 PMID:17576241 PMID:19932771 MGI:68743 NCBI chr 9:47,374,611...47,410,547
Ensembl chr 9:47,374,593...47,410,547
JBrowse link
collagen type IV trimer term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Col4a1 collagen type IV alpha 1 chain part_of ISO (PMID:16107487)
(MGI:2183884|PMID:12101409)
RGD PMID:12101409 PMID:16107487 MGI:2183884 NCBI chr16:78,183,533...78,294,412
Ensembl chr16:78,183,533...78,294,412
JBrowse link
G Col4a2 collagen type IV alpha 2 chain part_of IBA
ISO
PMID:21873635
(MGI:2183884|PMID:12101409)
RGD PMID:12101409 PMID:21873635 MGI:2183884, RGD:13792537 NCBI chr16:78,047,591...78,183,360
Ensembl chr16:78,047,602...78,183,839
JBrowse link
G Col4a3 collagen type IV alpha 3 chain part_of ISO (PMID:10766752)
(MGI:2183884|PMID:12101409)
RGD PMID:10766752 PMID:12101409 MGI:2183884 NCBI chr 9:83,875,958...84,004,955
Ensembl chr 9:83,875,561...84,001,895
JBrowse link
G Col4a4 collagen type IV alpha 4 chain part_of IBA
ISO
PMID:21873635
(MGI:69166|PMID:7962065)
(PMID:7523402)
RGD PMID:7523402 PMID:7962065 PMID:21873635 MGI:69166, RGD:13792537 NCBI chr 9:83,833,173...83,875,436
Ensembl chr 9:83,755,515...83,875,876
JBrowse link
G Col4a5 collagen type IV alpha 5 chain part_of ISO (MGI:2183884|PMID:12101409) RGD PMID:12101409 MGI:2183884 NCBI chr  X:105,118,762...105,322,699
Ensembl chr  X:105,118,820...105,322,692
JBrowse link
G Col4a6 collagen type IV alpha 6 chain part_of IBA
ISO
PMID:21873635
(MGI:2148900|PMID:10965041), (MGI:2183884|PMID:12101409)
RGD PMID:10965041 PMID:12101409 PMID:21873635 MGI:2148900 MGI:2183884, RGD:13792537 NCBI chr  X:104,766,463...105,117,499
Ensembl chr  X:104,766,957...105,117,500
JBrowse link
G Otol1 otolin 1 part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:154,339,612...154,349,050
Ensembl chr 2:154,339,612...154,349,023
JBrowse link
collagen type V trimer term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Col16a1 collagen type XVI alpha 1 chain part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:142,388,376...142,442,825
Ensembl chr 5:142,388,426...142,442,825
JBrowse link
G Col5a1 collagen type V alpha 1 chain part_of TAS
IEA
ISO
IBA
GO_REF:0000107
(PMID:9683580)
PMID:21873635
Ensembl
RGD
PMID:9683580 PMID:10852920 PMID:21873635 GO_REF:0000107, RGD:70693, RGD:13792537 NCBI chr 3:11,208,429...11,356,715
Ensembl chr 3:11,208,512...11,354,588
JBrowse link
G Col5a2 collagen type V alpha 2 chain part_of TAS
ISO
IBA
(PMID:9425231), (PMID:9783710)
PMID:21873635
RGD PMID:9425231 PMID:9783710 PMID:9822201 PMID:21873635 RGD:70694, RGD:13792537 NCBI chr 9:47,448,736...47,598,396
Ensembl chr 9:47,448,736...47,598,154
JBrowse link
G Col5a3 collagen type V alpha 3 chain part_of TAS
ISO
(MGI:3583053|PMID:15908193) RGD PMID:15908193 PMID:10852920 MGI:3583053, RGD:70693 NCBI chr 8:19,304,564...19,349,809
Ensembl chr 8:19,304,571...19,349,853
JBrowse link
collagen type X trimer term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Col10a1 collagen type X alpha 1 chain located_in ISO (PMID:11839302) RGD PMID:11839302 NCBI chr20:38,183,103...38,189,488
Ensembl chr20:38,182,494...38,189,494
JBrowse link
collagen type XI trimer term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Col11a1 collagen type XI alpha 1 chain part_of IBA
ISO
PMID:21873635
(PMID:3182841)
RGD PMID:3182841 PMID:21873635 RGD:13792537 NCBI chr 2:201,820,715...202,013,853
Ensembl chr 2:201,820,715...202,013,853
JBrowse link
collagen type XII trimer term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Col12a1 collagen type XII alpha 1 chain IDA RGD PMID:10419532 RGD:727275 NCBI chr 8:80,547,592...80,665,665
Ensembl chr 8:80,547,593...80,665,686
JBrowse link
collagen type XVIII trimer term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Col18a1 collagen type XVIII alpha 1 chain TAS RGD PMID:11592600 RGD:632362 NCBI chr20:11,474,104...11,582,593
Ensembl chr20:11,474,104...11,582,593
JBrowse link
cone matrix sheath term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rbp3 retinol binding protein 3 located_in
is_active_in
ISO
IBA
(PMID:21935947)
PMID:21873635
RGD PMID:21935947 PMID:21873635 RGD:13792537 NCBI chr16:9,267,538...9,276,006
Ensembl chr16:9,267,538...9,276,006
JBrowse link
EMILIN complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Emilin1 elastin microfibril interfacer 1 part_of
located_in
ISO (PMID:18463100)
(PMID:10821830)
RGD PMID:10821830 PMID:18463100 NCBI chr 6:25,455,974...25,463,736
Ensembl chr 6:25,445,298...25,463,698
JBrowse link
extracellular matrix of synaptic cleft term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lama5 laminin subunit alpha 5 is_active_in ISO (MGI:6103988|PMID:29091766) RGD PMID:29091766 MGI:6103988 NCBI chr 3:167,270,296...167,318,370
Ensembl chr 3:167,270,296...167,318,451
JBrowse link
G Sparcl1 SPARC like 1 is_active_in IDA PMID:17151913 SynGO PMID:17151913 RGD:13702411 NCBI chr14:5,632,816...5,663,866
Ensembl chr14:5,632,569...5,663,865
JBrowse link
G Tnr tenascin R is_active_in IDA PMID:21734302 SynGO PMID:21734302 RGD:155230724 NCBI chr13:71,751,714...72,172,731
Ensembl chr13:72,091,585...72,167,641
JBrowse link
fibrillar collagen trimer term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Col27a1 collagen type XXVII alpha 1 chain part_of ISO (MGI:3709703|PMID:17331945) RGD PMID:17331945 MGI:3709703 NCBI chr 5:76,647,302...76,765,987
Ensembl chr 5:76,647,429...76,765,174
JBrowse link
G Lum lumican part_of ISO (PMID:10734230) RGD PMID:10734230 NCBI chr 7:32,358,990...32,365,794
Ensembl chr 7:32,358,614...32,365,793
JBrowse link
interphotoreceptor matrix term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Impg1 interphotoreceptor matrix proteoglycan 1 located_in IEA
ISO
GO_REF:0000044
(MGI:6423642|PMID:32265257)
UniProt
RGD
PMID:32265257 GO_REF:0000044 MGI:6423642 NCBI chr 8:81,243,624...81,389,722
Ensembl chr 8:81,243,624...81,389,722
JBrowse link
G Impg2 interphotoreceptor matrix proteoglycan 2 located_in IEA
ISO
GO_REF:0000044
(MGI:6423642|PMID:32265257)
UniProt
RGD
PMID:32265257 GO_REF:0000044 MGI:6423642 NCBI chr11:44,318,836...44,418,382
Ensembl chr11:44,318,836...44,418,382
JBrowse link
G Rbp3 retinol binding protein 3 IDA RGD PMID:8282025 RGD:6893658 NCBI chr16:9,267,538...9,276,006
Ensembl chr16:9,267,538...9,276,006
JBrowse link
G Rtbdn retbindin located_in ISO (MGI:5787765|PMID:25542898) RGD PMID:25542898 MGI:5787765 NCBI chr19:23,197,506...23,205,544
Ensembl chr19:23,197,506...23,204,438
JBrowse link
G Vcan versican located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 2:20,761,718...20,860,637
Ensembl chr 2:20,761,718...20,860,637
JBrowse link
interstitial matrix term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abi3bp ABI family member 3 binding protein located_in ISO (MGI:3807344|PMID:18757743) RGD PMID:18757743 MGI:3807344 NCBI chr11:43,912,187...44,128,888
Ensembl chr11:43,913,043...44,128,929
JBrowse link
G Adamtsl4 ADAMTS-like 4 located_in ISO (MGI:3807344|PMID:18757743) RGD PMID:18757743 MGI:3807344 NCBI chr 2:183,235,634...183,247,091
Ensembl chr 2:183,235,646...183,246,848
JBrowse link
G Ccdc80 coiled-coil domain containing 80 located_in ISO (MGI:3807344|PMID:18757743) RGD PMID:18757743 MGI:3807344 NCBI chr11:55,685,165...55,718,827
Ensembl chr11:55,685,872...55,719,137
JBrowse link
G Col14a1 collagen type XIV alpha 1 chain located_in
is_active_in
ISO
IBA
(MGI:5444801|PMID:22906538)
PMID:21873635
RGD PMID:22906538 PMID:21873635 MGI:5444801, RGD:13792537 NCBI chr 7:86,722,093...86,937,215
Ensembl chr 7:86,722,094...86,937,214
JBrowse link
G Ecm2 extracellular matrix protein 2 located_in ISO (MGI:3807344|PMID:18757743) RGD PMID:18757743 MGI:3807344 NCBI chr17:15,120,194...15,152,536
Ensembl chr17:15,120,196...15,152,516
JBrowse link
G Egflam EGF-like, fibronectin type III and laminin G domains located_in ISO (MGI:3807344|PMID:18757743) RGD PMID:18757743 MGI:3807344 NCBI chr 2:56,301,945...56,476,665
Ensembl chr 2:56,302,566...56,476,298
JBrowse link
G Igf1 insulin-like growth factor 1 IDA RGD PMID:15544842 RGD:1580475 NCBI chr 7:22,282,895...22,361,972
Ensembl chr 7:22,282,930...22,359,296
JBrowse link
G Kazald1 Kazal-type serine peptidase inhibitor domain 1 located_in
is_active_in
ISO
IBA
(MGI:3807344|PMID:18757743)
PMID:21873635
RGD PMID:18757743 PMID:21873635 MGI:3807344, RGD:13792537 NCBI chr 1:243,939,596...243,943,060
Ensembl chr 1:243,939,647...243,943,059
JBrowse link
G Mamdc2 MAM domain containing 2 located_in ISO (MGI:3807344|PMID:18757743) RGD PMID:18757743 MGI:3807344 NCBI chr 1:220,863,959...221,016,493
Ensembl chr 1:220,863,976...221,016,354
JBrowse link
G Nav2 neuron navigator 2 located_in ISO (MGI:3807344|PMID:18757743) RGD PMID:18757743 MGI:3807344 NCBI chr 1:98,957,629...99,322,339
Ensembl chr 1:98,663,759...99,322,337
JBrowse link
G RGD1562885 similar to RIKEN cDNA 2300002M23 located_in ISO (MGI:3807344|PMID:18757743) RGD PMID:18757743 MGI:3807344 NCBI chr20:3,172,330...3,173,886
Ensembl chr20:3,172,330...3,173,886
JBrowse link
G Smoc2 SPARC related modular calcium binding 2 located_in ISO (MGI:3807344|PMID:18757743) RGD PMID:18757743 MGI:3807344 NCBI chr 1:55,262,472...55,391,804
Ensembl chr 1:55,262,530...55,391,693
JBrowse link
G Tnc tenascin C located_in ISO (MGI:2158011|PMID:11767049) RGD PMID:11767049 MGI:2158011 NCBI chr 5:77,375,851...77,460,712
Ensembl chr 5:77,375,851...77,460,624
JBrowse link
G Vit vitrin located_in
is_active_in
ISO
IBA
(MGI:3807344|PMID:18757743)
PMID:21873635
RGD PMID:18757743 PMID:21873635 MGI:3807344, RGD:13792537 NCBI chr 6:16,445,966...16,565,644
Ensembl chr 6:16,445,955...16,565,665
JBrowse link
G Vwa1 von Willebrand factor A domain containing 1 located_in ISO (MGI:3807344|PMID:18757743) RGD PMID:18757743 MGI:3807344 NCBI chr 5:166,377,451...166,382,784
Ensembl chr 5:166,377,455...166,382,637
JBrowse link
G Vwc2 von Willebrand factor C domain containing 2 located_in ISO (MGI:3807344|PMID:18757743) RGD PMID:18757743 MGI:3807344 NCBI chr14:85,683,670...85,825,068
Ensembl chr14:85,684,414...85,818,524
JBrowse link
laminin complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lama1 laminin subunit alpha 1 part_of ISO (MGI:67497|PMID:8034675) RGD PMID:8034675 MGI:67497 NCBI chr 9:107,692,770...107,816,847
Ensembl chr 9:107,692,770...107,817,478
JBrowse link
G Lamb1 laminin subunit beta 1 part_of IBA
ISO
PMID:21873635
(MGI:67497|PMID:8034675)
RGD PMID:8034675 PMID:21873635 MGI:67497, RGD:13792537 NCBI chr 6:47,835,492...47,902,585
Ensembl chr 6:47,835,525...47,902,585
JBrowse link
G Lamb2 laminin subunit beta 2 part_of IBA
ISO
PMID:21873635
(MGI:67497|PMID:8034675)
RGD PMID:8034675 PMID:21873635 MGI:67497, RGD:13792537 NCBI chr 8:109,178,367...109,190,552
Ensembl chr 8:109,178,409...109,190,549
JBrowse link
G Lamb3 laminin subunit beta 3 part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr13:104,833,810...104,875,405
Ensembl chr13:104,833,873...104,875,405
JBrowse link
G Ntn4 netrin 4 part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:28,186,611...28,300,390
Ensembl chr 7:28,186,611...28,300,390
JBrowse link
G Ntng1 netrin G1 part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:197,462,785...197,827,681
Ensembl chr 2:197,463,945...197,826,997
JBrowse link
G Ntng2 netrin G2 part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:12,492,574...12,551,104
Ensembl chr 3:12,492,639...12,545,890
JBrowse link
G Pmp22 peripheral myelin protein 22 part_of ISO (MGI:3613258|PMID:16436605) RGD PMID:16436605 MGI:3613258 NCBI chr10:47,795,709...47,825,715
Ensembl chr10:47,795,709...47,825,714
JBrowse link
laminin-1 complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lama1 laminin subunit alpha 1 part_of ISO UniProtKB:P07942 (PMID:10964500), (PMID:8601594)
(MGI:1095193|PMID:9264260), (MGI:3721838|PMID:17517882)
RGD PMID:8601594 PMID:9264260 PMID:10964500 PMID:17517882 MGI:1095193 MGI:3721838 NCBI chr 9:107,692,770...107,816,847
Ensembl chr 9:107,692,770...107,817,478
JBrowse link
G Lamb1 laminin subunit beta 1 part_of ISO UniProtKB:P25391 (PMID:10964500), (PMID:16289578)
(MGI:1095193|PMID:9264260)
RGD PMID:9264260 PMID:10964500 PMID:16289578 MGI:1095193 NCBI chr 6:47,835,492...47,902,585
Ensembl chr 6:47,835,525...47,902,585
JBrowse link
G Lamc1 laminin subunit gamma 1 IDA RGD PMID:8648916 RGD:633159 NCBI chr13:65,374,372...65,501,492
Ensembl chr13:65,374,372...65,501,492
JBrowse link
laminin-10 complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lama5 laminin subunit alpha 5 part_of ISO (PMID:10964500)
PR:P02468|PR:P02469 (MGI:1097278|PMID:9299121)
RGD PMID:9299121 PMID:10964500 MGI:1097278 NCBI chr 3:167,270,296...167,318,370
Ensembl chr 3:167,270,296...167,318,451
JBrowse link
G Lamb1 laminin subunit beta 1 part_of ISO (PMID:10964500), (PMID:16289578)
PR:P02468|PR:Q61001 (MGI:1097278|PMID:9299121)
RGD PMID:9299121 PMID:10964500 PMID:16289578 MGI:1097278 NCBI chr 6:47,835,492...47,902,585
Ensembl chr 6:47,835,525...47,902,585
JBrowse link
G Lamc1 laminin subunit gamma 1 part_of ISO PR:P02469|PR:Q61001 (MGI:1097278|PMID:9299121) RGD PMID:9299121 MGI:1097278 NCBI chr13:65,374,372...65,501,492
Ensembl chr13:65,374,372...65,501,492
JBrowse link
laminin-2 complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lamb1 laminin subunit beta 1 part_of ISO (PMID:16289578) RGD PMID:16289578 NCBI chr 6:47,835,492...47,902,585
Ensembl chr 6:47,835,525...47,902,585
JBrowse link
G Lamc2 laminin subunit gamma 2 IDA RGD PMID:9417868 RGD:633095 NCBI chr13:65,284,664...65,344,200
Ensembl chr13:65,284,664...65,344,200
JBrowse link
laminin-3 complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lama1 laminin subunit alpha 1 part_of ISO UniProtKB:P55268 (PMID:10964500) RGD PMID:10964500 NCBI chr 9:107,692,770...107,816,847
Ensembl chr 9:107,692,770...107,817,478
JBrowse link
G Lama3 laminin subunit alpha 3 IDA RGD PMID:8923212 RGD:633107 NCBI chr18:3,523,168...3,751,722
Ensembl chr18:3,523,133...3,751,353
JBrowse link
G Lamb2 laminin subunit beta 2 part_of IEA
ISO
GO_REF:0000107
(MGI:4829569|PMID:20566382)
UniProtKB:P25391 (PMID:10964500)
Ensembl
RGD
PMID:10964500 PMID:20566382 GO_REF:0000107 MGI:4829569 NCBI chr 8:109,178,367...109,190,552
Ensembl chr 8:109,178,409...109,190,549
JBrowse link
laminin-5 complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lama3 laminin subunit alpha 3 part_of ISO (MGI:1095193|PMID:9264260) RGD PMID:9264260 MGI:1095193 NCBI chr18:3,523,168...3,751,722
Ensembl chr18:3,523,133...3,751,353
JBrowse link
G Lama5 laminin subunit alpha 5 part_of IDA
IBA
PMID:21873635 RGD
GO_Central
PMID:9417868 PMID:21873635 RGD:633095, RGD:13792537 NCBI chr 3:167,270,296...167,318,370
Ensembl chr 3:167,270,296...167,318,451
JBrowse link
G Lamb3 laminin subunit beta 3 part_of ISO (MGI:1095193|PMID:9264260) RGD PMID:9264260 MGI:1095193 NCBI chr13:104,833,810...104,875,405
Ensembl chr13:104,833,873...104,875,405
JBrowse link
G Lamc2 laminin subunit gamma 2 part_of ISO (MGI:1095193|PMID:9264260) RGD PMID:9264260 MGI:1095193 NCBI chr13:65,284,664...65,344,200
Ensembl chr13:65,284,664...65,344,200
JBrowse link
laminin-8 complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lamb1 laminin subunit beta 1 part_of ISO (PMID:16289578) RGD PMID:16289578 NCBI chr 6:47,835,492...47,902,585
Ensembl chr 6:47,835,525...47,902,585
JBrowse link
matrilin complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Matn2 matrilin 2 located_in ISO (MGI:1336568|PMID:10224097) RGD PMID:10224097 MGI:1336568 NCBI chr 7:65,494,996...65,644,613
Ensembl chr 7:65,494,834...65,645,113
JBrowse link
G Matn3 matrilin 3 located_in ISO (MGI:1353153|PMID:10660556) RGD PMID:10660556 MGI:1353153 NCBI chr 6:31,748,383...31,768,101
Ensembl chr 6:31,748,474...31,768,101
JBrowse link
G Matn4 matrilin 4 located_in ISO (MGI:1934728|PMID:11279097) RGD PMID:11279097 MGI:1934728 NCBI chr 3:153,120,605...153,135,628
Ensembl chr 3:153,120,632...153,135,865
JBrowse link
multimerin complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mmrn1 multimerin 1 located_in ISO (PMID:9454761) RGD PMID:9454761 NCBI chr 4:89,875,408...89,950,814
Ensembl chr 4:89,903,174...89,950,474
JBrowse link
perineuronal net term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acan aggrecan IDA RGD PMID:18364019 RGD:2315810 NCBI chr 1:132,981,034...133,044,416
Ensembl chr 1:132,981,582...133,043,627
JBrowse link
G Bcan brevican located_in IDA
IEA
ISO
MMO:0000669
GO_REF:0000107
(MGI:2677604|PMID:14550776), (MGI:6192419|PMID:22121037)
Ensembl
RGD
PMID:14550776 PMID:22121037 PMID:16644727 GO_REF:0000107 MGI:2677604 MGI:6192419, RGD:9589827 NCBI chr 2:173,454,479...173,467,717
Ensembl chr 2:173,454,482...173,467,460
JBrowse link
G Hapln4 hyaluronan and proteoglycan link protein 4 located_in ISO (MGI:2677604|PMID:14550776), (MGI:6192419|PMID:22121037) RGD PMID:14550776 PMID:22121037 MGI:2677604 MGI:6192419 NCBI chr16:19,333,106...19,341,243
Ensembl chr16:19,333,106...19,341,243
JBrowse link
G Ncan neurocan IDA MMO:0000669,MMO:0000662 RGD PMID:16644727 RGD:9589827 NCBI chr16:19,301,969...19,328,436
Ensembl chr16:19,301,969...19,328,436
JBrowse link
G Ptprz1 protein tyrosine phosphatase, receptor type Z1 located_in IDA
ISO
IEA
(MGI:1858374|PMID:10793198)
GO_REF:0000107
RGD
Ensembl
PMID:10793198 PMID:16644727 GO_REF:0000107 MGI:1858374, RGD:9589827 NCBI chr 4:51,397,316...51,595,220
Ensembl chr 4:51,397,601...51,595,218
JBrowse link
G Tnr tenascin R located_in IEA
ISO
GO_REF:0000107
(MGI:1337730|PMID:10341229), (MGI:6830496|PMID:8244531)
Ensembl
RGD
PMID:8244531 PMID:10341229 GO_REF:0000107 MGI:1337730 MGI:6830496 NCBI chr13:71,751,714...72,172,731
Ensembl chr13:72,091,585...72,167,641
JBrowse link
G Vcan versican IDA MMO:0000669,MMO:0000662 RGD PMID:16644727 RGD:9589827 NCBI chr 2:20,761,718...20,860,637
Ensembl chr 2:20,761,718...20,860,637
JBrowse link
perisynaptic extracellular matrix term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acan aggrecan located_in
is_active_in
IEA
ISO
GO_REF:0000107
(MGI:6189263|PMID:27615741)
Ensembl
RGD
PMID:27615741 GO_REF:0000107 MGI:6189263 NCBI chr 1:132,981,034...133,044,416
Ensembl chr 1:132,981,582...133,043,627
JBrowse link
G Bcan brevican is_active_in IDA PMID:16503162
PMID:10414531
SynGO PMID:16503162 PMID:10414531 RGD:13702210, RGD:13702202 NCBI chr 2:173,454,479...173,467,717
Ensembl chr 2:173,454,482...173,467,460
JBrowse link
G Ncan neurocan is_active_in ISO (MGI:6162908|PMID:29670169), (MGI:6763867|PMID:30356641) RGD PMID:29670169 PMID:30356641 MGI:6162908 MGI:6763867 NCBI chr16:19,301,969...19,328,436
Ensembl chr16:19,301,969...19,328,436
JBrowse link
G Tnc tenascin C is_active_in ISO
IBA
(MGI:6189245|PMID:16452087)
PMID:21873635
RGD PMID:16452087 PMID:21873635 MGI:6189245, RGD:13792537 NCBI chr 5:77,375,851...77,460,712
Ensembl chr 5:77,375,851...77,460,624
JBrowse link
G Tnr tenascin R is_active_in IDA PMID:11598921 SynGO PMID:11598921 RGD:13702357 NCBI chr13:71,751,714...72,172,731
Ensembl chr13:72,091,585...72,167,641
JBrowse link
tenascin complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tnc tenascin C located_in ISO (MGI:3028459|PMID:14709716) RGD PMID:14709716 MGI:3028459 NCBI chr 5:77,375,851...77,460,712
Ensembl chr 5:77,375,851...77,460,624
JBrowse link
G Tnn tenascin N located_in ISO (PMID:17909022)
(MGI:3028459|PMID:14709716)
RGD PMID:14709716 PMID:17909022 MGI:3028459 NCBI chr13:72,319,160...72,386,362
Ensembl chr13:72,319,155...72,408,156
JBrowse link
G Tnr tenascin R part_of
located_in
IEA
ISO
GO_REF:0000107
(MGI:6828676|PMID:2477380)
Ensembl
RGD
PMID:2477380 GO_REF:0000107 MGI:6828676 NCBI chr13:71,751,714...72,172,731
Ensembl chr13:72,091,585...72,167,641
JBrowse link
transforming growth factor beta complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tgfb1 transforming growth factor, beta 1 located_in ISO (PMID:8679613)
(MGI:3821409|PMID:19022904)
RGD PMID:8679613 PMID:19022904 MGI:3821409 NCBI chr 1:81,196,532...81,212,848
Ensembl chr 1:81,196,532...81,212,847
JBrowse link
G Tgfb2 transforming growth factor, beta 2 located_in ISO (PMID:18243111) RGD PMID:18243111 NCBI chr13:98,160,075...98,261,771
Ensembl chr13:98,160,087...98,261,405
JBrowse link
G Tgfb3 transforming growth factor, beta 3 located_in ISO (PMID:8819159) RGD PMID:8819159 NCBI chr 6:105,704,058...105,726,661
Ensembl chr 6:105,704,236...105,726,564
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 20516
    cellular anatomical entity 20273
      external encapsulating structure 424
        extracellular matrix 422
          collagen-containing extracellular matrix 250
            EMILIN complex 1
            anchoring collagen complex + 1
            basement membrane + 118
            collagen and cuticulin-based cuticle extracellular matrix + 0
            collagen type XXVI trimer 0
            collagen type XXVIII trimer 0
            complex of collagen trimers + 19
            extracellular matrix of synaptic cleft 3
            hyaline layer + 0
            interphotoreceptor matrix + 5
            interstitial matrix 16
            matrilin complex 3
            multimerin complex 1
            perisynaptic extracellular matrix + 8
            synapse-associated extracellular matrix + 10
            tenascin complex 3
            transforming growth factor beta complex 3
Path 2
Term Annotations click to browse term
  cellular_component 20516
    cellular anatomical entity 20273
      cell periphery 6825
        external encapsulating structure 424
          extracellular matrix 422
            collagen-containing extracellular matrix 250
              EMILIN complex 1
              anchoring collagen complex + 1
              basement membrane + 118
              collagen and cuticulin-based cuticle extracellular matrix + 0
              collagen type XXVI trimer 0
              collagen type XXVIII trimer 0
              complex of collagen trimers + 19
              extracellular matrix of synaptic cleft 3
              hyaline layer + 0
              interphotoreceptor matrix + 5
              interstitial matrix 16
              matrilin complex 3
              multimerin complex 1
              perisynaptic extracellular matrix + 8
              synapse-associated extracellular matrix + 10
              tenascin complex 3
              transforming growth factor beta complex 3
paths to the root