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ONTOLOGY REPORT - ANNOTATIONS


Term:secondary palate development
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Accession:GO:0062009 term browser browse the term
Definition:The biological process whose specific outcome is the progression of the secondary palate from an initial condition to its mature state. This process begins with the formation of the structure and ends with the mature structure. The secondary palate is the part of the palate formed from the fusion of the two palatine shelves, extensions of the maxillary prominences.


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secondary palate development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Chd7 chromodomain helicase DNA binding protein 7 involved_in ISO (PMID:15300250) RGD PMID:15300250 NCBI chr 5:21,769,087...21,952,036
Ensembl chr 5:21,830,882...21,950,696
JBrowse link
G Lef1 lymphoid enhancer binding factor 1 involved_in IEA
ISO
GO_REF:0000107
(MGI:2683382|PMID:14691138)
Ensembl
RGD
PMID:14691138 GO_REF:0000107 MGI:2683382 NCBI chr 2:236,232,115...236,345,061
Ensembl chr 2:236,233,239...236,345,056
JBrowse link
G Lrrc32 leucine rich repeat containing 32 involved_in ISO (MGI:5920420|PMID:28912269) RGD PMID:28912269 MGI:5920420 NCBI chr 1:163,443,972...163,457,426
Ensembl chr 1:163,445,527...163,457,424
JBrowse link
G Smad2 SMAD family member 2 involved_in ISO (MGI:2683382|PMID:14691138) RGD PMID:14691138 MGI:2683382 NCBI chr18:72,550,107...72,612,078
Ensembl chr18:72,550,219...72,612,078
JBrowse link
G Smad4 SMAD family member 4 involved_in IEA
ISO
GO_REF:0000107
(MGI:2683382|PMID:14691138)
Ensembl
RGD
PMID:14691138 GO_REF:0000107 MGI:2683382 NCBI chr18:69,626,682...69,657,373
Ensembl chr18:69,627,757...69,671,199
JBrowse link
G Tgfb2 transforming growth factor, beta 2 involved_in ISO (MGI:894212|PMID:9217007) RGD PMID:9217007 MGI:894212 NCBI chr13:105,039,639...105,142,010
Ensembl chr13:105,039,853...105,141,030
JBrowse link
G Tgfb3 transforming growth factor, beta 3 involved_in ISS
ISO
GO_REF:0000024
(MGI:1341549|PMID:10433915), (MGI:2683382|PMID:14691138), (MGI:5920420|PMID:28912269), (MGI:77426|PMID:7493021), (MGI:77427|PMID:7493022)
UniProt
RGD
PMID:7493021 PMID:7493022 PMID:10433915 PMID:14691138 PMID:28912269 GO_REF:0000024 MGI:1341549 MGI:2683382 MGI:5920420 MGI:77426 MGI:77427 NCBI chr 6:109,913,757...109,936,217
Ensembl chr 6:109,913,757...109,935,533
JBrowse link
G Tgfbr2 transforming growth factor, beta receptor 2 involved_in ISO (MGI:2678274|PMID:12975342) RGD PMID:12975342 MGI:2678274 NCBI chr 8:124,310,288...124,399,345
Ensembl chr 8:124,312,754...124,399,494
JBrowse link
G Tgfbr3 transforming growth factor beta receptor 3 involved_in ISO (MGI:3699491|PMID:17295310) RGD PMID:17295310 MGI:3699491 NCBI chr14:3,506,416...3,680,508
Ensembl chr14:3,506,339...3,682,545
JBrowse link
G Wnt11 Wnt family member 11 involved_in ISO (PMID:18413325) RGD PMID:18413325 NCBI chr 1:163,794,136...163,813,756
Ensembl chr 1:163,797,660...163,813,756
JBrowse link
G Wnt3a Wnt family member 3A involved_in ISO (PMID:18413325) RGD PMID:18413325 NCBI chr10:45,598,898...45,643,151
Ensembl chr10:45,598,912...45,638,035
JBrowse link
G Wnt5a Wnt family member 5A involved_in ISO
IEA
(PMID:18413325)
GO_REF:0000107
RGD
Ensembl
PMID:18413325 GO_REF:0000107 NCBI chr16:4,469,451...4,490,271
Ensembl chr16:4,469,468...4,489,860
JBrowse link
G Wnt7a Wnt family member 7A involved_in ISO (PMID:18413325) RGD PMID:18413325 NCBI chr 4:122,994,425...123,040,609
Ensembl chr 4:122,994,425...123,040,609
JBrowse link
G Wnt8a Wnt family member 8A involved_in ISO (PMID:18413325) RGD PMID:18413325 NCBI chr18:27,331,236...27,336,829
Ensembl chr18:27,331,236...27,336,829
JBrowse link
epithelial cell apoptotic process involved in palatal shelf morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Jag2 jagged canonical Notch ligand 2 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:2657215 (MGI:3624929|PMID:16607638)
Ensembl
RGD
PMID:16607638 GO_REF:0000107 MGI:3624929 NCBI chr 6:137,711,144...137,733,331
Ensembl chr 6:137,711,155...137,733,026
JBrowse link
hard palate development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dlg1 discs large MAGUK scaffold protein 1 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:2680670|MGI:3710242 (MGI:1930428|PMID:11238884), (MGI:3709697|PMID:17435047)
Ensembl
RGD
PMID:11238884 PMID:17435047 GO_REF:0000107 MGI:1930428 MGI:3709697 NCBI chr11:72,164,566...72,378,895
Ensembl chr11:72,163,749...72,378,895
JBrowse link
G Foxe1 forkhead box E1 involved_in ISO (PMID:12165566) RGD PMID:12165566 NCBI chr 5:61,954,549...61,957,357
Ensembl chr 5:61,954,549...61,957,357
JBrowse link
G Fzd1 frizzled class receptor 1 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1888513 (MGI:4837757|PMID:20940229)
Ensembl
RGD
PMID:20940229 GO_REF:0000107 MGI:4837757 NCBI chr 4:26,470,864...26,475,262
Ensembl chr 4:26,470,864...26,475,262
JBrowse link
G Fzd2 frizzled class receptor 2 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1196625|MGI:4442611 (MGI:4837757|PMID:20940229)
Ensembl
RGD
PMID:20940229 GO_REF:0000107 MGI:4837757 NCBI chr10:90,550,147...90,552,057
Ensembl chr10:90,550,147...90,552,057
JBrowse link
G Gabrb3 gamma-aminobutyric acid type A receptor subunit beta 3 acts_upstream_of_or_within ISO (MGI:2657056|PMID:12606284), (MGI:60795|PMID:8389469), (MGI:66597|PMID:8146195), (MGI:77623|PMID:7581464) RGD PMID:7581464 PMID:8146195 PMID:8389469 PMID:12606284 MGI:2657056 MGI:60795 MGI:66597 MGI:77623 NCBI chr 1:113,034,251...113,265,364
Ensembl chr 1:112,976,770...113,265,364
JBrowse link
G Itgb6 integrin subunit beta 6 acts_upstream_of_or_within ISO MGI:1338035 (MGI:3836488|PMID:19118215) RGD PMID:19118215 MGI:3836488 NCBI chr 3:46,652,624...46,775,362
Ensembl chr 3:46,652,623...46,726,958
JBrowse link
G Itgb8 integrin subunit beta 8 acts_upstream_of_or_within ISO MGI:96615 (MGI:3836488|PMID:19118215) RGD PMID:19118215 MGI:3836488 NCBI chr 6:147,089,280...147,172,846
Ensembl chr 6:147,094,097...147,172,813
JBrowse link
G Mmp25 matrix metallopeptidase 25 acts_upstream_of_or_within ISO (MGI:4838340|PMID:20809987) RGD PMID:20809987 MGI:4838340 NCBI chr10:12,962,214...12,966,377 JBrowse link
G Sox11 SRY-box transcription factor 11 involved_in ISS
ISO
GO_REF:0000024
(MGI:3052265|PMID:15254231)
UniProt
RGD
PMID:15254231 GO_REF:0000024 MGI:3052265 NCBI chr 6:46,629,967...46,631,988
Ensembl chr 6:46,629,974...46,631,983
JBrowse link
G Tbx1 T-box transcription factor 1 acts_upstream_of_or_within ISO (MGI:6276435|PMID:30121012) RGD PMID:30121012 MGI:6276435 NCBI chr11:86,552,022...86,561,647
Ensembl chr11:86,552,022...86,560,969
JBrowse link
soft palate development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Col11a2 collagen type XI alpha 2 chain involved_in ISO (PMID:10677296) RGD PMID:10677296 NCBI chr20:3,829,324...3,859,022
Ensembl chr20:3,830,164...3,859,018
JBrowse link
G Foxe1 forkhead box E1 involved_in ISO (PMID:12165566) RGD PMID:12165566 NCBI chr 5:61,954,549...61,957,357
Ensembl chr 5:61,954,549...61,957,357
JBrowse link
G Sox11 SRY-box transcription factor 11 involved_in ISS
ISO
GO_REF:0000024
(MGI:3052265|PMID:15254231)
UniProt
RGD
PMID:15254231 GO_REF:0000024 MGI:3052265 NCBI chr 6:46,629,967...46,631,988
Ensembl chr 6:46,629,974...46,631,983
JBrowse link
G Tbx1 T-box transcription factor 1 involved_in ISO
ISS
(PMID:14585638)
GO_REF:0000024
RGD
UniProt
PMID:14585638 GO_REF:0000024 NCBI chr11:86,552,022...86,561,647
Ensembl chr11:86,552,022...86,560,969
JBrowse link
G Tshz1 teashirt zinc finger homeobox 1 acts_upstream_of_or_within ISO MGI:3721421 (MGI:3720547|PMID:17586487) RGD PMID:17586487 MGI:3720547 NCBI chr18:80,860,995...80,907,744
Ensembl chr18:80,862,372...80,865,584
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19599
    developmental process 6753
      anatomical structure development 6178
        roof of mouth development 102
          secondary palate development 27
            epithelial cell apoptotic process involved in palatal shelf morphogenesis 1
            hard palate development 10
            soft palate development 5
paths to the root