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ONTOLOGY REPORT - ANNOTATIONS

Term:connective tissue development
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Accession:GO:0061448 term browser browse the term
Definition:The progression of a connective tissue over time, from its formation to the mature structure.


show annotations for term's descendants           Sort by:
connective tissue development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ccn2 cellular communication network factor 2 acts_upstream_of_or_within ISO MGI:4949916 (PMID:23839921) RGD PMID:23839921 NCBI chr 1:20,802,199...20,805,315
Ensembl chr 1:20,802,199...20,805,734 		JBrowse link
G Dmd dystrophin acts_upstream_of_or_within ISO MGI:1342270 (PMID:23798567) RGD PMID:23798567 NCBI chr  X:47,272,324...49,504,219
Ensembl chr  X:47,272,331...49,504,207 		JBrowse link
G Dspp dentin sialophosphoprotein acts_upstream_of_or_within ISO MGI:2653208 (PMID:25027178) RGD PMID:25027178 NCBI chr14:5,565,562...5,571,669
Ensembl chr14:5,565,629...5,571,672 		JBrowse link
G Fkrp fukutin related protein acts_upstream_of_or_within ISO (PMID:21224063) RGD PMID:21224063 NCBI chr 1:77,479,641...77,486,954
Ensembl chr 1:77,476,084...77,486,992 		JBrowse link
G Foxa1 forkhead box A1 acts_upstream_of_or_within ISO MGI:1347476 (PMID:23383217) RGD PMID:23383217 NCBI chr 6:75,099,907...75,136,534
Ensembl chr 6:75,103,503...75,136,188 		JBrowse link
G Foxa2 forkhead box A2 acts_upstream_of_or_within ISO MGI:1347472 (PMID:23383217) RGD PMID:23383217 NCBI chr 3:135,470,123...135,474,326
Ensembl chr 3:135,470,131...135,474,326 		JBrowse link
G Large1 LARGE xylosyl- and glucuronyltransferase 1 acts_upstream_of_or_within ISO MGI:1856965|MGI:94909 (PMID:23798567), (PMID:25661440) RGD PMID:23798567 PMID:25661440 NCBI chr19:11,603,129...12,048,930
Ensembl chr19:11,603,129...12,048,930 		JBrowse link
G Lox lysyl oxidase acts_upstream_of_or_within ISO MGI:98725 (PMID:25715398) RGD PMID:25715398 NCBI chr18:45,964,544...45,977,431
Ensembl chr18:45,967,343...46,041,477 		JBrowse link
G Slc39a13 solute carrier family 39 member 13 involved_in ISO
IEA		 (PMID:18985159)
GO_REF:0000107
(MGI:3829328|PMID:18985159)		 RGD
Ensembl		 PMID:18985159 GO_REF:0000107 MGI:3829328 NCBI chr 3:77,039,411...77,047,528
Ensembl chr 3:77,037,565...77,049,226 		JBrowse link
G Tgfb1 transforming growth factor, beta 1 acts_upstream_of_or_within ISO MGI:96817 (PMID:25715398) RGD PMID:25715398 NCBI chr 1:81,196,532...81,212,848
Ensembl chr 1:81,196,532...81,212,847 		JBrowse link
adipose tissue development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aacs acetoacetyl-CoA synthetase IEP RGD PMID:16055091 RGD:2301021 NCBI chr12:31,113,098...31,156,411
Ensembl chr12:31,113,098...31,160,954 		JBrowse link
G Abhd15 abhydrolase domain containing 15 involved_in ISO (MGI:6239488|PMID:24236098) RGD PMID:24236098 MGI:6239488 NCBI chr10:62,363,209...62,368,600
Ensembl chr10:62,363,209...62,368,600 		JBrowse link
G Acat1 acetyl-CoA acetyltransferase 1 IEP RGD PMID:2866764 RGD:2326101 NCBI chr 8:53,979,813...54,008,861
Ensembl chr 8:53,979,813...54,008,855 		JBrowse link
G Adrm1 ADRM1 26S proteasome ubiquitin receptor involved_in ISO (MGI:4849324|PMID:21048919) RGD PMID:21048919 MGI:4849324 NCBI chr 3:167,265,435...167,270,197
Ensembl chr 3:167,265,296...167,270,195 		JBrowse link
G Amer1 APC membrane recruitment protein 1 acts_upstream_of_or_within ISO MGI:2446599|MGI:5086003 (PMID:21571217) RGD PMID:21571217 NCBI chr  X:60,300,595...60,316,480
Ensembl chr  X:60,295,751...60,316,440 		JBrowse link
G Ap1s2 adaptor related protein complex 1 subunit sigma 2 acts_upstream_of_or_within ISO MGI:5620801 (PMID:24928897) RGD PMID:24928897 NCBI chr  X:30,572,746...30,598,961
Ensembl chr  X:30,572,751...30,597,262 		JBrowse link
G Arid5b AT-rich interaction domain 5B involved_in ISO (MGI:5009387|PMID:18070594) RGD PMID:18070594 MGI:5009387 NCBI chr20:20,307,731...20,490,746
Ensembl chr20:20,307,731...20,487,433 		JBrowse link
G Atf2 activating transcription factor 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:2443973 (PMID:19948881)		 Ensembl
RGD		 PMID:19948881 GO_REF:0000107 NCBI chr 3:58,718,323...58,795,280
Ensembl chr 3:58,718,332...58,795,236 		JBrowse link
G Bdh1 3-hydroxybutyrate dehydrogenase 1 IEP RGD PMID:2866764 RGD:2326101 NCBI chr11:69,302,534...69,343,173
Ensembl chr11:69,302,534...69,337,671 		JBrowse link
G Bscl2 BSCL2 lipid droplet biogenesis associated, seipin acts_upstream_of_or_within ISO MGI:5014325 (PMID:21551454) RGD PMID:21551454 NCBI chr 1:205,731,828...205,743,430
Ensembl chr 1:205,733,872...205,743,421 		JBrowse link
G Cd2ap CD2-associated protein involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
(PMID:29729186)		 Ensembl
RGD		 PMID:29729186 GO_REF:0000107 NCBI chr 9:18,086,744...18,182,744
Ensembl chr 9:18,086,984...18,182,199 		JBrowse link
G Col6a1 collagen type VI alpha 1 chain acts_upstream_of_or_within ISO MGI:2153356 (PMID:19114551) RGD PMID:19114551 NCBI chr20:11,906,105...11,924,599
Ensembl chr20:11,905,957...11,924,597 		JBrowse link
G Creb5 cAMP responsive element binding protein 5 acts_upstream_of_or_within ISO MGI:109349 (PMID:19948881) RGD PMID:19948881 NCBI chr 4:82,393,091...82,794,320
Ensembl chr 4:82,393,730...82,790,325 		JBrowse link
G Dhrs7b dehydrogenase/reductase 7B involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:2669525|MGI:5749209 (PMID:28930673)		 Ensembl
RGD		 PMID:28930673 GO_REF:0000107 NCBI chr10:45,504,344...45,537,094
Ensembl chr10:45,504,426...45,537,076 		JBrowse link
G Dyrk1b dual specificity tyrosine phosphorylation regulated kinase 1B involved_in ISO (PMID:24827035) RGD PMID:24827035 NCBI chr 1:83,479,168...83,497,011
Ensembl chr 1:83,479,147...83,487,169 		JBrowse link
G Ebf2 EBF transcription factor 2 acts_upstream_of_or_within ISO MGI:3037977 (PMID:23499423) RGD PMID:23499423 NCBI chr15:41,435,509...41,634,403
Ensembl chr15:41,435,509...41,634,403 		JBrowse link
G Enpp1 ectonucleotide pyrophosphatase/phosphodiesterase 1 involved_in ISO MGI:2385534|MGI:5607149 (PMID:25368121), (PMID:31730234) RGD PMID:25368121 PMID:31730234 NCBI chr 1:20,698,746...20,763,741
Ensembl chr 1:20,698,764...20,763,715 		JBrowse link
G Fgl1 fibrinogen-like 1 acts_upstream_of_or_within ISO MGI:5510996 (PMID:23483972) RGD PMID:23483972 NCBI chr16:51,120,652...51,150,907
Ensembl chr16:51,120,694...51,151,093 		JBrowse link
G Fto FTO, alpha-ketoglutarate dependent dioxygenase involved_in IEA
ISO		 GO_REF:0000107
(MGI:3840763|PMID:19234441)		 Ensembl
RGD		 PMID:19234441 GO_REF:0000107 MGI:3840763 NCBI chr19:15,284,898...15,692,142
Ensembl chr19:15,349,696...15,692,083 		JBrowse link
G Guca2b guanylate cyclase activator 2B involved_in ISO MGI:2679505 (PMID:24898144) RGD PMID:24898144 NCBI chr 5:133,246,891...133,248,941
Ensembl chr 5:133,246,909...133,248,966 		JBrowse link
G Hmga2 high mobility group AT-hook 2 acts_upstream_of_or_within ISO MGI:1858044|MGI:2386412 (PMID:24728959), (PMID:7958830) RGD PMID:7958830 PMID:24728959 NCBI chr 7:55,877,145...55,998,813
Ensembl chr 7:55,880,112...55,994,784 		JBrowse link
G Hmgcs2 3-hydroxy-3-methylglutaryl-CoA synthase 2 IEP RGD PMID:10357839 RGD:2326128 NCBI chr 2:185,875,609...185,903,505
Ensembl chr 2:185,875,616...185,902,130 		JBrowse link
G Hras HRas proto-oncogene, GTPase involved_in ISO (PMID:31408278) RGD PMID:31408278 NCBI chr 1:196,290,127...196,299,823
Ensembl chr 1:196,296,263...196,300,615 		JBrowse link
G Hsd17b1 hydroxysteroid (17-beta) dehydrogenase 1 acts_upstream_of_or_within ISO MGI:3799948 (PMID:29180785) RGD PMID:29180785 NCBI chr10:86,009,728...86,011,928
Ensembl chr10:86,009,728...86,011,927 		JBrowse link
G Id2 inhibitor of DNA binding 2 acts_upstream_of_or_within ISO MGI:3806370 (PMID:18562627) RGD PMID:18562627 NCBI chr 6:41,740,556...41,742,393
Ensembl chr 6:41,728,946...41,744,400 		JBrowse link
G Lep leptin acts_upstream_of_or_within ISO MGI:101761 (PMID:10742101) RGD PMID:10742101 NCBI chr 4:57,661,127...57,675,262
Ensembl chr 4:57,661,131...57,675,262 		JBrowse link
G Lipa lipase A, lysosomal acid type involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:2451080 (PMID:29374543)		 Ensembl
RGD		 PMID:29374543 GO_REF:0000107 NCBI chr 1:232,024,351...232,057,735
Ensembl chr 1:232,024,356...232,057,633 		JBrowse link
G Lrp5 LDL receptor related protein 5 involved_in ISO
IBA		 (PMID:17680723)
GO_REF:0000033		 RGD
GO_Central		 PMID:17680723 GO_REF:0000033 NCBI chr 1:200,814,247...200,917,581
Ensembl chr 1:200,814,250...200,917,581 		JBrowse link
G Nampt nicotinamide phosphoribosyltransferase NOT|involved_in ISO (PMID:17983582) RGD PMID:17983582 NCBI chr 6:49,425,316...49,462,109
Ensembl chr 6:49,424,332...49,462,100 		JBrowse link
G Oxct1 3-oxoacid CoA transferase 1 IEP RGD PMID:2866764 RGD:2326101 NCBI chr 2:53,236,370...53,384,715
Ensembl chr 2:53,236,368...53,384,714 		JBrowse link
G Paxip1 PAX interacting protein 1 involved_in ISO (MGI:4354659|PMID:19583951) RGD PMID:19583951 MGI:4354659 NCBI chr 4:7,525,132...7,576,659
Ensembl chr 4:7,525,004...7,576,548 		JBrowse link
G Pgrmc2 progesterone receptor membrane component 2 involved_in ISO
ISS		 (PMID:28111073)
GO_REF:0000024		 RGD
UniProt		 PMID:28111073 GO_REF:0000024 NCBI chr 2:124,068,257...124,084,155
Ensembl chr 2:124,068,260...124,084,155 		JBrowse link
G Pik3ca phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit alpha acts_upstream_of_or_within ISO MGI:4845856 (PMID:24691033) RGD PMID:24691033 NCBI chr 2:115,175,275...115,249,034
Ensembl chr 2:115,174,984...115,249,032 		JBrowse link
G Ppard peroxisome proliferator-activated receptor delta acts_upstream_of_or_within ISO MGI:2386684 (PMID:11756685) RGD PMID:11756685 NCBI chr20:6,298,785...6,363,970
Ensembl chr20:6,298,785...6,363,968 		JBrowse link
G Ppargc1a PPARG coactivator 1 alpha involved_in ISO
IEA		 (MGI:5309068|PMID:22237023)
GO_REF:0000107		 RGD
Ensembl		 PMID:22237023 GO_REF:0000107 MGI:5309068 NCBI chr14:58,860,752...59,516,525
Ensembl chr14:58,861,144...59,512,656 		JBrowse link
G Pum2 pumilio RNA-binding family member 2 involved_in ISO (PMID:30735131) RGD PMID:30735131 NCBI chr 6:31,462,879...31,542,976
Ensembl chr 6:31,462,872...31,542,976 		JBrowse link
G Rasal2 RAS protein activator like 2 involved_in ISO MGI:5897630 (PMID:28580280) RGD PMID:28580280 NCBI chr13:69,279,882...69,569,161
Ensembl chr13:69,258,622...69,569,940 		JBrowse link
G Rorc RAR-related orphan receptor C involved_in ISO (MGI:5545969|PMID:21853531) RGD PMID:21853531 MGI:5545969 NCBI chr 2:182,009,707...182,034,910
Ensembl chr 2:182,009,286...182,034,907 		JBrowse link
G Selenom selenoprotein M acts_upstream_of_or_within ISO MGI:3812975 (PMID:23880772) RGD PMID:23880772 NCBI chr14:78,395,826...78,398,429
Ensembl chr14:78,395,826...78,398,429 		JBrowse link
G Sh3pxd2b SH3 and PX domains 2B involved_in ISO (MGI:4439252|PMID:20137777) RGD PMID:20137777 MGI:4439252 NCBI chr10:16,918,611...17,027,499
Ensembl chr10:16,918,679...17,005,170 		JBrowse link
G Slc25a25 solute carrier family 25 member 25 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:4948968 (PMID:21296886)		 Ensembl
RGD		 PMID:21296886 GO_REF:0000107 NCBI chr 3:15,708,702...15,742,195
Ensembl chr 3:15,708,703...15,742,216 		JBrowse link
G Sox8 SRY-box transcription factor 8 involved_in
acts_upstream_of_or_within		 ISS
ISO		 GO_REF:0000024
MGI:2154329 (PMID:11564878), (PMID:19286648)		 UniProt
RGD		 PMID:11564878 PMID:19286648 GO_REF:0000024 NCBI chr10:14,584,829...14,589,818
Ensembl chr10:14,584,829...14,589,818 		JBrowse link
G Spart spartin acts_upstream_of_or_within ISO MGI:5430946 (PMID:22619377) RGD PMID:22619377 NCBI chr 2:139,292,630...139,319,248
Ensembl chr 2:139,292,355...139,319,248 		JBrowse link
G Sptlc2 serine palmitoyltransferase, long chain base subunit 2 involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(MGI:5917779|PMID:28698261), (MGI:6107161|PMID:27818258)		 UniProt
Ensembl
RGD		 PMID:27818258 PMID:28698261 GO_REF:0000024 GO_REF:0000107 MGI:5917779 MGI:6107161 NCBI chr 6:106,948,682...107,031,532
Ensembl chr 6:106,950,949...107,031,542 		JBrowse link
G Tbl1xr1 TBL1X/Y related 1 acts_upstream_of_or_within ISO MGI:5511131 (PMID:23499424) RGD PMID:23499424 NCBI chr 2:104,788,950...104,929,055
Ensembl chr 2:104,801,721...104,929,055 		JBrowse link
G Ubb ubiquitin B acts_upstream_of_or_within ISO MGI:3774112 (PMID:18299572) RGD PMID:18299572 NCBI chr10:47,247,630...47,249,335
Ensembl chr10:47,245,637...47,249,333 		JBrowse link
G Umodl1 uromodulin-like 1 acts_upstream_of_or_within ISO (PMID:23190605) RGD PMID:23190605 NCBI chr20:9,027,751...9,087,133
Ensembl chr20:9,025,724...9,087,146 		JBrowse link
G Vps13b vacuolar protein sorting 13 homolog B involved_in ISO (PMID:26358774) RGD PMID:26358774 NCBI chr 7:66,557,862...67,128,429
Ensembl chr 7:66,558,471...67,128,429 		JBrowse link
G Xbp1 X-box binding protein 1 involved_in ISS
ISO		 GO_REF:0000024
(MGI:5496939|PMID:23623498)		 UniProt
RGD		 PMID:23623498 GO_REF:0000024 MGI:5496939 NCBI chr14:80,390,629...80,395,713
Ensembl chr14:80,390,643...80,395,693 		JBrowse link
G Zfp516 zinc finger protein 516 involved_in ISO (MGI:5616937|PMID:25578880) RGD PMID:25578880 MGI:5616937 NCBI chr18:76,286,453...76,386,526
Ensembl chr18:76,302,096...76,385,269 		JBrowse link
articular cartilage development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bgn biglycan involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:107942 (PMID:19932218)		 Ensembl
RGD		 PMID:19932218 GO_REF:0000107 NCBI chr  X:151,197,296...151,209,458
Ensembl chr  X:151,197,273...151,209,461 		JBrowse link
G Enpp1 ectonucleotide pyrophosphatase/phosphodiesterase 1 involved_in ISO MGI:1857079|MGI:3785162 (PMID:22359666), (PMID:22927960), (PMID:28402956) RGD PMID:22359666 PMID:22927960 PMID:28402956 NCBI chr 1:20,698,746...20,763,741
Ensembl chr 1:20,698,764...20,763,715 		JBrowse link
G Epyc epiphycan involved_in
acts_upstream_of_or_within		 IBA
ISO		 GO_REF:0000033
MGI:88158 (PMID:19932218)		 GO_Central
RGD		 PMID:19932218 GO_REF:0000033 NCBI chr 7:32,436,620...32,474,326
Ensembl chr 7:32,436,620...32,474,135 		JBrowse link
G Ift80 intraflagellar transport 80 acts_upstream_of_or_within ISO MGI:3665440|MGI:5818514 (PMID:26098911) RGD PMID:26098911 NCBI chr 2:153,144,707...153,240,024
Ensembl chr 2:153,145,795...153,240,024 		JBrowse link
G Ogn osteoglycin involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr17:15,032,069...15,052,626
Ensembl chr17:15,032,069...15,052,739 		JBrowse link
G Optc opticin involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr13:45,353,954...45,368,254
Ensembl chr13:45,355,148...45,365,237 		JBrowse link
G Pbxip1 PBX homeobox interacting protein 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:3665440|MGI:6363078|MGI:6363079 (PMID:30659184)		 Ensembl
RGD		 PMID:30659184 GO_REF:0000107 NCBI chr 2:174,856,339...174,868,922
Ensembl chr 2:174,856,397...174,868,919 		JBrowse link
bronchus cartilage development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sox9 SRY-box transcription factor 9 acts_upstream_of_or_within ISO MGI:2429649 (PMID:24218621) RGD PMID:24218621 NCBI chr10:97,806,485...97,811,994
Ensembl chr10:97,806,485...97,811,994 		JBrowse link
G Srf serum response factor acts_upstream_of_or_within ISO MGI:3522206 (PMID:24218621) RGD PMID:24218621 NCBI chr 9:14,426,453...14,435,734
Ensembl chr 9:14,426,472...14,435,733 		JBrowse link
cartilage condensation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acan aggrecan involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:1856465 (PMID:3070812)		 Ensembl
RGD		 PMID:3070812 GO_REF:0000107 NCBI chr 1:132,981,582...133,044,416
Ensembl chr 1:132,981,582...133,043,627 		JBrowse link
G Barx2 BARX homeobox 2 acts_upstream_of_or_within ISO (PMID:15800003) RGD PMID:15800003 NCBI chr 8:30,251,132...30,319,105
Ensembl chr 8:30,251,132...30,319,013 		JBrowse link
G Bmpr1b bone morphogenetic protein receptor type 1B acts_upstream_of_or_within ISO MGI:2158498 (PMID:10631181) RGD PMID:10631181 NCBI chr 2:230,538,252...230,871,077
Ensembl chr 2:230,541,558...230,871,368 		JBrowse link
G Ccn2 cellular communication network factor 2 acts_upstream_of_or_within ISO (PMID:15305294) RGD PMID:15305294 NCBI chr 1:20,802,199...20,805,315
Ensembl chr 1:20,802,199...20,805,734 		JBrowse link
G Chad chondroadherin IEP RGD PMID:9461555 RGD:69806 NCBI chr10:79,512,170...79,515,941
Ensembl chr10:79,511,931...79,515,940 		JBrowse link
G Col11a1 collagen type XI alpha 1 chain acts_upstream_of_or_within ISO MGI:1856399 (PMID:3070812) RGD PMID:3070812 NCBI chr 2:201,820,715...202,013,853
Ensembl chr 2:201,820,715...202,013,853 		JBrowse link
G Col2a1 collagen type II alpha 1 chain involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:1857275 (PMID:3070812)		 Ensembl
RGD		 PMID:3070812 GO_REF:0000107 NCBI chr 7:129,098,489...129,127,560
Ensembl chr 7:129,098,786...129,127,546 		JBrowse link
G Fgf4 fibroblast growth factor 4 acts_upstream_of_or_within ISO MGI:98726 (PMID:8565825) RGD PMID:8565825 NCBI chr 1:200,023,937...200,027,793
Ensembl chr 1:200,024,056...200,025,466 		JBrowse link
G Fgf6 fibroblast growth factor 6 acts_upstream_of_or_within ISO MGI:98726 (PMID:8565825) RGD PMID:8565825 NCBI chr 4:159,854,913...159,863,447
Ensembl chr 4:159,854,913...159,863,447 		JBrowse link
G Mapk14 mitogen activated protein kinase 14 involved_in IEA
ISO		 GO_REF:0000107
(MGI:5487758|PMID:17202865)		 Ensembl
RGD		 PMID:17202865 GO_REF:0000107 MGI:5487758 NCBI chr20:6,749,646...6,810,590
Ensembl chr20:6,749,670...6,810,589 		JBrowse link
G Mycn MYCN proto-oncogene, bHLH transcription factor involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
(PMID:17360777)		 Ensembl
RGD		 PMID:17360777 GO_REF:0000107 NCBI chr 6:35,717,764...35,723,590
Ensembl chr 6:35,717,764...35,723,590 		JBrowse link
G Myf5 myogenic factor 5 acts_upstream_of_or_within ISO MGI:1857219 (PMID:8565825) RGD PMID:8565825 NCBI chr 7:42,802,946...42,806,177
Ensembl chr 7:42,802,946...42,806,177 		JBrowse link
G Otor otoraplin involved_in
acts_upstream_of_or_within		 IBA
ISO		 GO_REF:0000033
(PMID:10998416)		 GO_Central
RGD		 PMID:10998416 GO_REF:0000033 NCBI chr 3:130,415,339...130,418,601
Ensembl chr 3:130,415,339...130,418,601 		JBrowse link
G Pkd1 polycystin 1, transient receptor potential channel interacting acts_upstream_of_or_within ISO MGI:2152589 (PMID:11593033) RGD PMID:11593033 NCBI chr10:13,573,779...13,621,138
Ensembl chr10:13,573,021...13,621,128 		JBrowse link
G Ror2 receptor tyrosine kinase-like orphan receptor 2 acts_upstream_of_or_within ISO MGI:2183225 (PMID:14745966) RGD PMID:14745966 NCBI chr17:11,972,830...12,148,152
Ensembl chr17:11,972,830...12,148,152 		JBrowse link
G Sox5 SRY-box transcription factor 5 involved_in ISS
ISO		 GO_REF:0000024
(MGI:2446758|PMID:11702786), (MGI:3037234|PMID:14993235)		 UniProt
RGD		 PMID:11702786 PMID:14993235 GO_REF:0000024 MGI:2446758 MGI:3037234 NCBI chr 4:176,781,375...177,736,833
Ensembl chr 4:176,785,892...177,736,852 		JBrowse link
G Sox6 SRY-box transcription factor 6 involved_in ISS
ISO		 GO_REF:0000024
(MGI:2446758|PMID:11702786), (MGI:3037234|PMID:14993235)		 UniProt
RGD		 PMID:11702786 PMID:14993235 GO_REF:0000024 MGI:2446758 MGI:3037234 NCBI chr 1:169,723,306...170,334,846
Ensembl chr 1:169,729,194...170,277,386 		JBrowse link
G Sox9 SRY-box transcription factor 9 involved_in
acts_upstream_of_or_within		 ISS
ISO		 GO_REF:0000024
MGI:2158693|MGI:2385468 (PMID:10319868), (PMID:12414734)		 UniProt
RGD		 PMID:10319868 PMID:12414734 GO_REF:0000024 NCBI chr10:97,806,485...97,811,994
Ensembl chr10:97,806,485...97,811,994 		JBrowse link
G Sulf1 sulfatase 1 involved_in ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr 5:6,362,894...6,526,174
Ensembl chr 5:6,362,911...6,525,584 		JBrowse link
G Tgfb2 transforming growth factor, beta 2 acts_upstream_of_or_within ISO MGI:95518|MGI:95520 (PMID:8565825) RGD PMID:8565825 NCBI chr13:98,160,075...98,261,771
Ensembl chr13:98,160,087...98,261,405 		JBrowse link
G Thra thyroid hormone receptor alpha involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:1860442 (PMID:9250685)		 Ensembl
RGD		 PMID:9250685 GO_REF:0000107 NCBI chr10:83,701,885...83,729,408
Ensembl chr10:83,700,755...83,729,936 		JBrowse link
G Uncx UNC homeobox involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:1859373|MGI:1928812 (PMID:10804168), (PMID:10804169)		 Ensembl
RGD		 PMID:10804168 PMID:10804169 GO_REF:0000107 NCBI chr12:15,092,779...15,097,300
Ensembl chr12:15,092,784...15,097,300 		JBrowse link
G Wnt7a Wnt family member 7A involved_in ISO (PMID:17202865) RGD PMID:17202865 NCBI chr 4:123,863,108...123,908,981
Ensembl chr 4:123,863,108...123,908,981 		JBrowse link
cartilage development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp7a ATPase copper transporting alpha acts_upstream_of_or_within ISO MGI:1856097 (PMID:8895222) RGD PMID:8895222 NCBI chr  X:71,094,144...71,201,550
Ensembl chr  X:71,094,202...71,198,354 		JBrowse link
G Bbs1 Bardet-Biedl syndrome 1 acts_upstream_of_or_within ISO MGI:3767672 (PMID:19195025) RGD PMID:19195025 NCBI chr 1:202,184,812...202,204,118
Ensembl chr 1:202,186,125...202,204,086 		JBrowse link
G Bbs2 Bardet-Biedl syndrome 2 acts_upstream_of_or_within ISO MGI:3521669 (PMID:19195025) RGD PMID:19195025 NCBI chr19:10,909,653...10,944,998
Ensembl chr19:10,909,619...10,944,993 		JBrowse link
G Bmp3 bone morphogenetic protein 3 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr14:10,712,489...10,737,153
Ensembl chr14:10,712,489...10,737,153 		JBrowse link
G Bmp4 bone morphogenetic protein 4 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr15:19,618,538...19,633,494
Ensembl chr15:19,618,542...19,623,306 		JBrowse link
G Bmp6 bone morphogenetic protein 6 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr17:26,318,121...26,469,691
Ensembl chr17:26,318,569...26,470,365 		JBrowse link
G Bmpr1a bone morphogenetic protein receptor type 1A acts_upstream_of_or_within ISO MGI:2158390|MGI:3577961 (PMID:15492776) RGD PMID:15492776 NCBI chr16:9,736,390...9,829,825
Ensembl chr16:9,736,630...9,780,616 		JBrowse link
G Cd44 CD44 molecule involved_in ISO
IEA		 (PMID:11944887)
GO_REF:0000107		 RGD
Ensembl		 PMID:11944887 GO_REF:0000107 NCBI chr 3:89,155,850...89,244,615
Ensembl chr 3:89,157,058...89,244,620 		JBrowse link
G Cfh complement factor H acts_upstream_of_or_within ISO (PMID:19828624) RGD PMID:19828624 NCBI chr13:51,512,376...51,613,829
Ensembl chr13:51,511,828...51,613,838 		JBrowse link
G Chst11 carbohydrate sulfotransferase 11 acts_upstream_of_or_within ISO MGI:3768254 (PMID:16079159) RGD PMID:16079159 NCBI chr 7:20,524,535...20,743,008
Ensembl chr 7:20,528,100...20,743,111 		JBrowse link
G Chsy1 chondroitin sulfate synthase 1 acts_upstream_of_or_within ISO MGI:5007063 (PMID:22280990) RGD PMID:22280990 NCBI chr 1:119,689,626...119,750,711
Ensembl chr 1:119,686,350...119,750,601 		JBrowse link
G Cnmd chondromodulin involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr15:55,041,548...55,066,297
Ensembl chr15:55,041,561...55,066,297 		JBrowse link
G Col10a1 collagen type X alpha 1 chain IMP RGD PMID:10853827 RGD:704421 NCBI chr20:38,183,103...38,189,488
Ensembl chr20:38,182,494...38,189,494 		JBrowse link
G Col11a1 collagen type XI alpha 1 chain acts_upstream_of_or_within ISO MGI:1856399 (PMID:4100752), (PMID:4110409), (PMID:7859283), (PMID:886247) RGD PMID:886247 PMID:4100752 PMID:4110409 PMID:7859283 MGI:60257 NCBI chr 2:201,820,715...202,013,853
Ensembl chr 2:201,820,715...202,013,853 		JBrowse link
G Col11a2 collagen type XI alpha 2 chain involved_in ISO
IBA		 (PMID:9188673)
GO_REF:0000033		 RGD
GO_Central		 PMID:9188673 GO_REF:0000033 NCBI chr20:4,786,932...4,816,598
Ensembl chr20:4,786,929...4,815,985 		JBrowse link
G Col2a1 collagen type II alpha 1 chain acts_upstream_of_or_within IEP
ISO		 MGI:1857275|MGI:2152978 (PMID:10100048), (PMID:11171689), (PMID:11680679), (PMID:7276808), (PMID:7590256), (PMID:9061443), (PMID:9165353), (PMID:9832566) RGD PMID:7276808 PMID:7590256 PMID:9061443 PMID:9165353 PMID:9832566 More... RGD:70694 NCBI chr 7:129,098,489...129,127,560
Ensembl chr 7:129,098,786...129,127,546 		JBrowse link
G Col3a1 collagen type III alpha 1 chain involved_in ISO MGI:1857431 (PMID:31655293) RGD PMID:31655293 NCBI chr 9:47,374,611...47,410,547
Ensembl chr 9:47,374,593...47,410,547 		JBrowse link
G Col6a1 collagen type VI alpha 1 chain acts_upstream_of_or_within ISO MGI:2153356 (PMID:19248115), (PMID:22448243) RGD PMID:19248115 PMID:22448243 NCBI chr20:11,906,105...11,924,599
Ensembl chr20:11,905,957...11,924,597 		JBrowse link
G Col9a1 collagen type IX alpha 1 chain acts_upstream_of_or_within ISO MGI:2152964|MGI:88469 (PMID:11680679), (PMID:18191556) RGD PMID:11680679 PMID:18191556 NCBI chr 9:26,585,034...26,668,222
Ensembl chr 9:26,585,034...26,668,213 		JBrowse link
G Comp cartilage oligomeric matrix protein acts_upstream_of_or_within ISO MGI:3758741|MGI:5550566|MGI:88465 (PMID:17588960), (PMID:18191556), (PMID:23951406) RGD PMID:17588960 PMID:18191556 PMID:23951406 NCBI chr16:19,047,206...19,055,584
Ensembl chr16:19,047,207...19,055,845 		JBrowse link
G Cr2 complement C3d receptor 2 acts_upstream_of_or_within ISO (PMID:19828624) RGD PMID:19828624 NCBI chr13:106,678,579...106,716,595
Ensembl chr13:106,685,413...106,716,235 		JBrowse link
G Creb3l2 cAMP responsive element binding protein 3-like 2 involved_in ISS
ISO		 GO_REF:0000024
(MGI:4438315|PMID:19767744)		 UniProt
RGD		 PMID:19767744 GO_REF:0000024 MGI:4438315 NCBI chr 4:65,907,570...66,112,078
Ensembl chr 4:65,907,655...66,023,763 		JBrowse link
G Csgalnact1 chondroitin sulfate N-acetylgalactosaminyltransferase 1 acts_upstream_of_or_within ISO MGI:4868209 (PMID:20812917) RGD PMID:20812917 NCBI chr16:20,995,210...21,330,586
Ensembl chr16:21,235,784...21,330,319 		JBrowse link
G Ddrgk1 DDRGK domain containing 1 involved_in ISO
IBA		 (PMID:28263186)
GO_REF:0000033
(MGI:5908314|PMID:28263186)		 RGD
GO_Central		 PMID:28263186 GO_REF:0000033 MGI:5908314 NCBI chr 3:117,861,916...117,882,680
Ensembl chr 3:117,861,653...117,882,680 		JBrowse link
G Dicer1 dicer 1 ribonuclease III acts_upstream_of_or_within ISO MGI:3589208 (PMID:21098571) RGD PMID:21098571 NCBI chr 6:123,627,529...123,692,278
Ensembl chr 6:123,631,250...123,693,965 		JBrowse link
G Dlx2 distal-less homeobox 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:1857828 (PMID:7590232)		 Ensembl
RGD		 PMID:7590232 GO_REF:0000107 NCBI chr 3:56,370,238...56,373,581
Ensembl chr 3:56,370,483...56,373,597 		JBrowse link
G Dspp dentin sialophosphoprotein IEP femoral head RGD PMID:20679519 RGD:12914771 NCBI chr14:5,565,562...5,571,669
Ensembl chr14:5,565,629...5,571,672 		JBrowse link
G Edn1 endothelin 1 acts_upstream_of_or_within ISO MGI:1857637 (PMID:8152482) RGD PMID:8152482 NCBI chr17:22,454,924...22,460,812
Ensembl chr17:22,454,420...22,460,885 		JBrowse link
G Enpp1 ectonucleotide pyrophosphatase/phosphodiesterase 1 involved_in ISO MGI:2385534|MGI:6402836 (PMID:15625282), (PMID:24770645), (PMID:25260930) RGD PMID:15625282 PMID:24770645 PMID:25260930 NCBI chr 1:20,698,746...20,763,741
Ensembl chr 1:20,698,764...20,763,715 		JBrowse link
G Errfi1 ERBB receptor feedback inhibitor 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:5575860 (PMID:24550287)		 Ensembl
RGD		 PMID:24550287 GO_REF:0000107 NCBI chr 5:161,323,981...161,337,289
Ensembl chr 5:161,323,998...161,337,282 		JBrowse link
G Esrra estrogen related receptor, alpha IMP RGD PMID:17170100 RGD:1625657 NCBI chr 1:204,104,100...204,114,182
Ensembl chr 1:204,104,101...204,114,268 		JBrowse link
G Evc EvC ciliary complex subunit 1 IEP RGD PMID:15278943 RGD:1598913 NCBI chr14:73,456,181...73,498,955
Ensembl chr14:73,456,222...73,498,099 		JBrowse link
G Fbxw4 F-box and WD repeat domain containing 4 acts_upstream_of_or_within ISO MGI:1857833 (PMID:9733575) RGD PMID:9733575 NCBI chr 1:244,426,892...244,514,188
Ensembl chr 1:244,426,896...244,514,163 		JBrowse link
G Fgfr3 fibroblast growth factor receptor 3 acts_upstream_of_or_within ISO MGI:1931521 (PMID:15781473) RGD PMID:15781473 NCBI chr14:76,987,242...77,002,671
Ensembl chr14:76,987,993...77,003,341 		JBrowse link
G Fosl2 FOS like 2, AP-1 transcription factor subunit acts_upstream_of_or_within ISO (PMID:15509771) RGD PMID:15509771 NCBI chr 6:24,297,898...24,319,219
Ensembl chr 6:24,300,956...24,320,034 		JBrowse link
G Gata3 GATA binding protein 3 involved_in ISO (PMID:29247144) RGD PMID:29247144 NCBI chr17:68,643,760...68,666,000
Ensembl chr17:68,643,873...68,665,391 		JBrowse link
G Gnas GNAS complex locus involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:3043361 (PMID:15797856)		 Ensembl
RGD		 PMID:15797856 GO_REF:0000107 NCBI chr 3:163,071,003...163,136,350
Ensembl chr 3:163,071,417...163,127,262
Ensembl chr 3:163,071,417...163,127,262 		JBrowse link
G Hes5 hes family bHLH transcription factor 5 involved_in ISS
ISO		 GO_REF:0000024
(MGI:5285816|PMID:17093926)
(PMID:17093926)		 UniProt
RGD		 PMID:17093926 GO_REF:0000024 MGI:5285816 NCBI chr 5:165,522,138...165,523,684
Ensembl chr 5:165,522,234...165,523,001 		JBrowse link
G Hif1a hypoxia inducible factor 1 subunit alpha acts_upstream_of_or_within ISO MGI:2386649|MGI:2386679 (PMID:11691837) RGD PMID:11691837 NCBI chr 6:92,624,059...92,669,262
Ensembl chr 6:92,624,390...92,669,261 		JBrowse link
G Hoxa3 homeobox A3 acts_upstream_of_or_within ISO MGI:96184|MGI:96207 (PMID:9441667) RGD PMID:9441667 NCBI chr 4:81,269,243...81,313,218
Ensembl chr 4:81,269,243...81,313,218 		JBrowse link
G Hoxb3 homeo box B3 acts_upstream_of_or_within ISO MGI:96175|MGI:96207 (PMID:9441667) RGD PMID:9441667 NCBI chr10:81,258,739...81,314,134
Ensembl chr10:81,299,357...81,313,107 		JBrowse link
G Hoxc4 homeo box C4 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:1857570 (PMID:8626021)		 Ensembl
RGD		 PMID:8626021 GO_REF:0000107 NCBI chr 7:134,135,279...134,173,133
Ensembl chr 7:134,170,591...134,173,133 		JBrowse link
G Hoxc6 homeo box C6 involved_in IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr 7:134,138,017...134,148,899
Ensembl chr 7:134,135,502...134,148,392 		JBrowse link
G Hoxd3 homeo box D3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:96175|MGI:96184 (PMID:9441667)		 Ensembl
RGD		 PMID:9441667 GO_REF:0000107 NCBI chr 3:59,638,708...59,650,282
Ensembl chr 3:59,638,708...59,650,282 		JBrowse link
G Hyal1 hyaluronidase 1 involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:11944887)		 UniProt
Ensembl
RGD		 PMID:11944887 GO_REF:0000024 GO_REF:0000107 NCBI chr 8:108,250,668...108,254,519
Ensembl chr 8:108,250,667...108,260,210 		JBrowse link
G Hyal2 hyaluronidase 2 involved_in ISO
IEA
ISS		 (PMID:11944887)
GO_REF:0000107
GO_REF:0000024		 RGD
Ensembl
UniProt		 PMID:11944887 GO_REF:0000024 GO_REF:0000107 NCBI chr 8:108,241,895...108,246,853
Ensembl chr 8:108,243,133...108,246,850 		JBrowse link
G Hyal3 hyaluronidase 3 involved_in ISO (PMID:11944887) RGD PMID:11944887 NCBI chr 8:108,254,385...108,260,020
Ensembl chr 8:108,250,667...108,260,647 		JBrowse link
G Ift80 intraflagellar transport 80 acts_upstream_of_or_within ISO (PMID:32227389) RGD PMID:32227389 NCBI chr 2:153,144,707...153,240,024
Ensembl chr 2:153,145,795...153,240,024 		JBrowse link
G Ihh Indian hedgehog signaling molecule involved_in
acts_upstream_of_or_within		 ISO (PMID:17889828)
MGI:1934258 (PMID:17191253)		 RGD PMID:17191253 PMID:17889828 NCBI chr 9:76,504,315...76,510,532
Ensembl chr 9:76,504,315...76,510,532 		JBrowse link
G Il17f interleukin 17F involved_in IEA
ISO		 GO_REF:0000107
(PMID:11574464)		 Ensembl
RGD		 PMID:11574464 GO_REF:0000107 NCBI chr 9:23,190,094...23,201,482
Ensembl chr 9:23,190,100...23,201,482 		JBrowse link
G Itgb8 integrin subunit beta 8 involved_in ISO (PMID:24312400) RGD PMID:24312400 NCBI chr 6:140,125,002...140,208,261
Ensembl chr 6:140,127,203...140,208,476 		JBrowse link
G Lum lumican IEP RGD PMID:19746167 RGD:2317685 NCBI chr 7:32,358,990...32,365,794
Ensembl chr 7:32,358,614...32,365,793 		JBrowse link
G Mapk3 mitogen activated protein kinase 3 acts_upstream_of_or_within ISO (PMID:17644814) RGD PMID:17644814 NCBI chr 1:181,366,646...181,372,863
Ensembl chr 1:181,366,637...181,372,863 		JBrowse link
G Matn3 matrilin 3 acts_upstream_of_or_within ISO MGI:3759029 (PMID:23951406) RGD PMID:23951406 NCBI chr 6:31,748,517...31,768,564
Ensembl chr 6:31,748,474...31,768,101 		JBrowse link
G Mgp matrix Gla protein involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 4:169,766,290...169,769,612
Ensembl chr 4:169,766,279...169,769,667 		JBrowse link
G Mir140 microRNA 140 acts_upstream_of_or_within ISO MGI:4461000 (PMID:20466812) RGD PMID:20466812 NCBI chr19:35,465,577...35,465,675
Ensembl chr19:35,465,577...35,465,675 		JBrowse link
G Mkks MKKS centrosomal shuttling protein acts_upstream_of_or_within ISO MGI:3526444 (PMID:19195025) RGD PMID:19195025 NCBI chr 3:124,201,877...124,221,142
Ensembl chr 3:124,201,877...124,220,162 		JBrowse link
G Msx1 msh homeobox 1 IMP RGD PMID:10332146 RGD:1600462 NCBI chr14:72,961,036...72,964,970
Ensembl chr14:72,961,148...72,964,966 		JBrowse link
G Msx2 msh homeobox 2 acts_upstream_of_or_within IMP
ISO		 MGI:1926381 (PMID:10742104), (PMID:11668602) RGD PMID:10742104 PMID:11668602 PMID:10332146 RGD:1600462 NCBI chr17:11,097,214...11,102,879
Ensembl chr17:11,097,103...11,102,879 		JBrowse link
G Nfatc2 nuclear factor of activated T-cells 2 involved_in ISO (PMID:35789258)
(MGI:1351237|PMID:10620601)		 RGD PMID:10620601 PMID:35789258 MGI:1351237 NCBI chr 3:157,195,970...157,328,640
Ensembl chr 3:157,198,872...157,328,325 		JBrowse link
G Nfia nuclear factor I/A involved_in IEA
ISO		 GO_REF:0000107
MGI:2449024 (PMID:29247144)		 Ensembl
RGD		 PMID:29247144 GO_REF:0000107 NCBI chr 5:112,436,655...112,781,878
Ensembl chr 5:112,436,644...112,775,885 		JBrowse link
G Nog noggin involved_in
acts_upstream_of		 IEA
ISO		 GO_REF:0000104
(PMID:10684250)		 UniProt
RGD		 PMID:10684250 GO_REF:0000104 NCBI chr10:74,128,712...74,130,339
Ensembl chr10:74,128,712...74,130,339 		JBrowse link
G Npr2 natriuretic peptide receptor 2 involved_in ISO MGI:1856702|MGI:3774275 (PMID:15722353), (PMID:17728275) RGD PMID:15722353 PMID:17728275 NCBI chr 5:57,883,171...57,901,590
Ensembl chr 5:57,883,171...57,901,580 		JBrowse link
G Pax7 paired box 7 acts_upstream_of_or_within ISO MGI:1857831 (PMID:8631261) RGD PMID:8631261 NCBI chr 5:151,996,368...152,098,023
Ensembl chr 5:151,999,092...152,097,979 		JBrowse link
G Pitx1 paired-like homeodomain 1 acts_upstream_of_or_within ISO MGI:1857659 (PMID:10101115) RGD PMID:10101115 NCBI chr17:8,794,134...8,800,292
Ensembl chr17:8,794,134...8,800,291 		JBrowse link
G Pkd1 polycystin 1, transient receptor potential channel interacting involved_in ISO (PMID:11891195) RGD PMID:11891195 NCBI chr10:13,573,779...13,621,138
Ensembl chr10:13,573,021...13,621,128 		JBrowse link
G Prrx1 paired related homeobox 1 acts_upstream_of_or_within ISO MGI:1857640|MGI:98218 (PMID:7758948), (PMID:9876178) RGD PMID:7758948 PMID:9876178 NCBI chr13:75,600,777...75,671,896
Ensembl chr13:75,601,706...75,670,866 		JBrowse link
G Prrx2 paired related homeobox 2 acts_upstream_of_or_within ISO MGI:97712 (PMID:9876178) RGD PMID:9876178 NCBI chr 3:14,132,574...14,168,533
Ensembl chr 3:14,094,004...14,168,535 		JBrowse link
G Satb2 SATB homeobox 2 acts_upstream_of_or_within ISO MGI:3692768 (PMID:16751105) RGD PMID:16751105 NCBI chr 9:58,348,027...58,534,256
Ensembl chr 9:58,350,246...58,530,707 		JBrowse link
G Sfrp2 secreted frizzled-related protein 2 acts_upstream_of_or_within ISO MGI:3810257 (PMID:18729207) RGD PMID:18729207 NCBI chr 2:169,089,517...169,097,064
Ensembl chr 2:169,089,517...169,097,063 		JBrowse link
G Smad1 SMAD family member 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:1328787|MGI:1859993 (PMID:19224984)		 Ensembl
RGD		 PMID:19224984 GO_REF:0000107 NCBI chr19:28,513,130...28,573,665
Ensembl chr19:28,513,131...28,573,651 		JBrowse link
G Smad5 SMAD family member 5 acts_upstream_of_or_within ISO MGI:109452|MGI:1859993 (PMID:19224984) RGD PMID:19224984 NCBI chr17:7,862,332...7,891,678
Ensembl chr17:7,864,720...7,891,634 		JBrowse link
G Smad9 SMAD family member 9 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:109452|MGI:1328787 (PMID:19224984)		 Ensembl
RGD		 PMID:19224984 GO_REF:0000107 NCBI chr 2:138,956,326...139,006,315
Ensembl chr 2:138,986,471...139,006,307 		JBrowse link
G Smpd3 sphingomyelin phosphodiesterase 3 acts_upstream_of_or_within ISO MGI:3575405 (PMID:17591962), (PMID:27325675) RGD PMID:17591962 PMID:27325675 NCBI chr19:34,162,337...34,245,786
Ensembl chr19:34,162,341...34,245,749 		JBrowse link
G Snorc secondary ossification center associated regulator of chondrocyte maturation involved_in ISO (MGI:6103145|PMID:28323137) RGD PMID:28323137 MGI:6103145 NCBI chr 9:88,140,510...88,145,527
Ensembl chr 9:88,140,419...88,145,891 		JBrowse link
G Sox5 SRY-box transcription factor 5 involved_in
acts_upstream_of_or_within		 ISS
ISO		 GO_REF:0000024
MGI:98368 (PMID:15634692)
(MGI:5780653|PMID:26150426), (MGI:6414706|PMID:15529345)		 UniProt
RGD		 PMID:15529345 PMID:15634692 PMID:26150426 GO_REF:0000024 MGI:5780653 MGI:6414706 NCBI chr 4:176,781,375...177,736,833
Ensembl chr 4:176,785,892...177,736,852 		JBrowse link
G Sox6 SRY-box transcription factor 6 involved_in
acts_upstream_of_or_within		 ISS
ISO		 GO_REF:0000024
MGI:98367 (PMID:15634692)
(MGI:5780653|PMID:26150426), (MGI:6414706|PMID:15529345)		 UniProt
RGD		 PMID:15529345 PMID:15634692 PMID:26150426 GO_REF:0000024 MGI:5780653 MGI:6414706 NCBI chr 1:169,723,306...170,334,846
Ensembl chr 1:169,729,194...170,277,386 		JBrowse link
G Sox9 SRY-box transcription factor 9 acts_upstream_of_or_within
involved_in		 TAS
ISO
NAS
ISS
IEP		 MGI:2158693 (PMID:11371614)
(PMID:19047045)
(MGI:5908314|PMID:28263186), (MGI:6414706|PMID:15529345)
PMID:19828133
GO_REF:0000024		 RGD
UniProt		 PMID:11371614 PMID:15529345 PMID:19047045 PMID:28263186 PMID:11514554 More... GO_REF:0000024 MGI:5908314 MGI:6414706, RGD:70568, RGD:8553796, RGD:1599098 NCBI chr10:97,806,485...97,811,994
Ensembl chr10:97,806,485...97,811,994 		JBrowse link
G Sulf1 sulfatase 1 involved_in ISS
ISO		 GO_REF:0000024
(MGI:5306560|PMID:20479257)		 UniProt
RGD		 PMID:20479257 GO_REF:0000024 MGI:5306560 NCBI chr 5:6,362,894...6,526,174
Ensembl chr 5:6,362,911...6,525,584 		JBrowse link
G Sulf2 sulfatase 2 involved_in ISO (MGI:5306560|PMID:20479257) RGD PMID:20479257 MGI:5306560 NCBI chr 3:154,822,079...154,904,566
Ensembl chr 3:154,822,085...154,904,415 		JBrowse link
G Tapt1 transmembrane anterior posterior transformation 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr14:66,873,467...66,919,737
Ensembl chr14:66,873,459...66,919,741 		JBrowse link
G Tgfbr2 transforming growth factor, beta receptor 2 involved_in ISO (MGI:3796269|PMID:18498113) RGD PMID:18498113 MGI:3796269 NCBI chr 8:115,794,537...115,883,615
Ensembl chr 8:115,794,537...115,883,228 		JBrowse link
G Timp1 TIMP metallopeptidase inhibitor 1 IEP RGD PMID:16208432 RGD:8694091 NCBI chr  X:1,212,969...1,217,714
Ensembl chr  X:1,212,972...1,217,664 		JBrowse link
G Trip11 thyroid hormone receptor interactor 11 involved_in ISO (PMID:30728324) RGD PMID:30728324 NCBI chr 6:120,995,242...121,067,693
Ensembl chr 6:120,998,733...121,067,781 		JBrowse link
G Tyms thymidylate synthetase IEP RGD PMID:3471366 RGD:2317423 NCBI chr 9:113,313,454...113,329,551
Ensembl chr 9:113,313,452...113,329,536 		JBrowse link
G Wnt5a Wnt family member 5A involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr16:3,697,032...3,718,230
Ensembl chr16:3,697,032...3,718,234 		JBrowse link
G Wnt7a Wnt family member 7A involved_in ISO (MGI:4821073|PMID:16826533) RGD PMID:16826533 MGI:4821073 NCBI chr 4:123,863,108...123,908,981
Ensembl chr 4:123,863,108...123,908,981 		JBrowse link
G Wnt9a Wnt family member 9A acts_upstream_of ISO (PMID:19047045) RGD PMID:19047045 NCBI chr10:44,094,140...44,121,134
Ensembl chr10:44,094,140...44,121,133 		JBrowse link
G Zbtb16 zinc finger and BTB domain containing 16 involved_in ISS
ISO		 GO_REF:0000024
(PMID:21547890)		 UniProt
RGD		 PMID:21547890 GO_REF:0000024 NCBI chr 8:48,989,376...49,177,011
Ensembl chr 8:48,994,566...49,177,011 		JBrowse link
G Zeb1 zinc finger E-box binding homeobox 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:1857799 (PMID:9389660)		 Ensembl
RGD		 PMID:9389660 GO_REF:0000107 NCBI chr17:51,948,948...52,116,018
Ensembl chr17:51,948,948...52,115,214 		JBrowse link
cartilage development involved in endochondral bone morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cbs cystathionine beta synthase acts_upstream_of_or_within ISO MGI:1857139 (PMID:15622513) RGD PMID:15622513 NCBI chr20:9,708,089...9,732,623
Ensembl chr20:9,708,090...9,732,764 		JBrowse link
G Col1a1 collagen type I alpha 1 chain acts_upstream_of_or_within ISO MGI:3769585 (PMID:18248096) RGD PMID:18248096 NCBI chr10:79,883,622...79,900,625
Ensembl chr10:79,883,622...79,900,624 		JBrowse link
G Col2a1 collagen type II alpha 1 chain acts_upstream_of_or_within
involved_in		 IEP
ISO
IEA		 mandibular condylar cartilage
MGI:1857275|MGI:2152978 (PMID:11680679), (PMID:8989518), (PMID:9022054)
GO_REF:0000107		 RGD
Ensembl		 PMID:8989518 PMID:9022054 PMID:11680679 PMID:12924823 GO_REF:0000107, RGD:8661659 NCBI chr 7:129,098,489...129,127,560
Ensembl chr 7:129,098,786...129,127,546 		JBrowse link
G Ext1 exostosin glycosyltransferase 1 acts_upstream_of_or_within ISO (PMID:21185280), (PMID:23958822) RGD PMID:21185280 PMID:23958822 NCBI chr 7:84,375,769...84,654,625
Ensembl chr 7:84,375,784...84,655,357 		JBrowse link
G Ghr growth hormone receptor IEP RGD PMID:15749813 RGD:2307373 NCBI chr 2:52,541,452...52,804,960
Ensembl chr 2:52,542,594...52,804,735 		JBrowse link
G Hoxa11 homeobox A11 acts_upstream_of_or_within ISO MGI:96203 (PMID:14668414) RGD PMID:14668414 NCBI chr 4:81,342,527...81,346,189
Ensembl chr 4:81,342,528...81,346,232 		JBrowse link
G Hoxd11 homeobox D11 acts_upstream_of_or_within ISO MGI:96172 (PMID:14668414) RGD PMID:14668414 NCBI chr 3:59,584,840...59,587,257
Ensembl chr 3:59,585,039...59,586,783 		JBrowse link
G Hspg2 heparan sulfate proteoglycan 2 acts_upstream_of_or_within ISO MGI:1934891 (PMID:10545953) RGD PMID:10545953 NCBI chr 5:149,677,437...149,778,594
Ensembl chr 5:149,677,476...149,778,594 		JBrowse link
G Shox2 SHOX homeobox 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:3628798 (PMID:16537395)		 Ensembl
RGD		 PMID:16537395 GO_REF:0000107 NCBI chr 2:151,217,049...151,227,180
Ensembl chr 2:151,217,552...151,227,143 		JBrowse link
G Sik3 SIK family kinase 3 acts_upstream_of_or_within ISO MGI:5317918 (PMID:22318228) RGD PMID:22318228 NCBI chr 8:46,312,253...46,522,444
Ensembl chr 8:46,311,989...46,522,444 		JBrowse link
G Trpv4 transient receptor potential cation channel, subfamily V, member 4 involved_in ISO (PMID:26249260) RGD PMID:26249260 NCBI chr12:41,938,533...41,977,517
Ensembl chr12:41,938,560...41,977,517 		JBrowse link
cartilage morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hand1 heart and neural crest derivatives expressed 1 acts_upstream_of_or_within ISO MGI:103580 (PMID:17764670) RGD PMID:17764670 NCBI chr10:42,006,646...42,009,213
Ensembl chr10:42,006,651...42,009,213 		JBrowse link
G Hand2 heart and neural crest derivatives expressed 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:103577 (PMID:17764670)		 Ensembl
RGD		 PMID:17764670 GO_REF:0000107 NCBI chr16:32,917,448...32,920,791
Ensembl chr16:32,917,823...32,919,891 		JBrowse link
G Hoxa5 homeo box A5 acts_upstream_of_or_within ISO MGI:2150397 (PMID:9441679) RGD PMID:9441679 NCBI chr 4:81,302,341...81,306,234
Ensembl chr 4:81,302,353...81,306,234 		JBrowse link
G Mef2c myocyte enhancer factor 2C acts_upstream_of_or_within ISO MGI:3603182 (PMID:17420000) RGD PMID:17420000 NCBI chr 2:13,973,299...14,136,065
Ensembl chr 2:13,993,438...14,132,880 		JBrowse link
G Msx1 msh homeobox 1 acts_upstream_of_or_within ISO MGI:1933766 (PMID:12489152) RGD PMID:12489152 NCBI chr14:72,961,036...72,964,970
Ensembl chr14:72,961,148...72,964,966 		JBrowse link
G Snai1 snail family transcriptional repressor 1 acts_upstream_of_or_within ISO MGI:1096393 (PMID:17376812) RGD PMID:17376812 NCBI chr 3:156,248,479...156,252,969
Ensembl chr 3:156,248,485...156,252,969 		JBrowse link
G Snai2 snail family transcriptional repressor 2 acts_upstream_of_or_within ISO MGI:98330 (PMID:17376812) RGD PMID:17376812 NCBI chr11:86,182,788...86,186,203
Ensembl chr11:86,181,909...86,186,200 		JBrowse link
chondroblast differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acan aggrecan IEP RGD PMID:20001227 RGD:2315747 NCBI chr 1:132,981,582...133,044,416
Ensembl chr 1:132,981,582...133,043,627 		JBrowse link
G Ccn1 cellular communication network factor 1 acts_upstream_of_or_within ISO (PMID:9441684) RGD PMID:9441684 NCBI chr 2:234,562,410...234,565,370
Ensembl chr 2:234,562,408...234,565,484 		JBrowse link
G Fgf2 fibroblast growth factor 2 involved_in ISO (PMID:17167778) RGD PMID:17167778 NCBI chr 2:120,236,328...120,290,673
Ensembl chr 2:120,236,328...120,291,221 		JBrowse link
G Fgf4 fibroblast growth factor 4 involved_in ISO (PMID:17167778) RGD PMID:17167778 NCBI chr 1:200,023,937...200,027,793
Ensembl chr 1:200,024,056...200,025,466 		JBrowse link
G Gdf5 growth differentiation factor 5 involved_in ISO (PMID:25092592) RGD PMID:25092592 NCBI chr 3:144,454,316...144,458,508
Ensembl chr 3:144,454,338...144,458,612 		JBrowse link
G Rara retinoic acid receptor, alpha acts_upstream_of_or_within ISO (PMID:10684250) RGD PMID:10684250 NCBI chr10:83,883,490...83,928,932
Ensembl chr10:83,893,384...83,928,142 		JBrowse link
chondrocyte development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acan aggrecan involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:1856465 (PMID:9664687)		 Ensembl
RGD		 PMID:9664687 GO_REF:0000107 NCBI chr 1:132,981,582...133,044,416
Ensembl chr 1:132,981,582...133,043,627 		JBrowse link
G Bmpr2 bone morphogenetic protein receptor type 2 involved_in ISO (PMID:9442116) RGD PMID:9442116 NCBI chr 9:61,192,718...61,307,280
Ensembl chr 9:61,190,566...61,301,809 		JBrowse link
G Bpnt2 3'(2'), 5'-bisphosphate nucleotidase 2 acts_upstream_of_or_within ISO MGI:3806990 (PMID:18539921) RGD PMID:18539921 NCBI chr 5:17,775,684...17,802,570
Ensembl chr 5:17,772,608...17,802,570 		JBrowse link
G Chst11 carbohydrate sulfotransferase 11 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:3768254 (PMID:16079159)		 Ensembl
RGD		 PMID:16079159 GO_REF:0000107 NCBI chr 7:20,524,535...20,743,008
Ensembl chr 7:20,528,100...20,743,111 		JBrowse link
G Chsy1 chondroitin sulfate synthase 1 acts_upstream_of_or_within ISO MGI:5007063 (PMID:22280990) RGD PMID:22280990 NCBI chr 1:119,689,626...119,750,711
Ensembl chr 1:119,686,350...119,750,601 		JBrowse link
G Col11a1 collagen type XI alpha 1 chain acts_upstream_of_or_within ISO MGI:1856399 (PMID:4100752) RGD PMID:4100752 NCBI chr 2:201,820,715...202,013,853
Ensembl chr 2:201,820,715...202,013,853 		JBrowse link
G Comp cartilage oligomeric matrix protein involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:3758741|MGI:5550566 (PMID:17588960), (PMID:22006726)		 Ensembl
RGD		 PMID:17588960 PMID:22006726 GO_REF:0000107 NCBI chr16:19,047,206...19,055,584
Ensembl chr16:19,047,207...19,055,845 		JBrowse link
G Ecm1 extracellular matrix protein 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
(PMID:20138147)		 Ensembl
RGD		 PMID:20138147 GO_REF:0000107 NCBI chr 2:183,287,491...183,292,729
Ensembl chr 2:183,287,322...183,292,671 		JBrowse link
G Eif2ak3 eukaryotic translation initiation factor 2 alpha kinase 3 acts_upstream_of_or_within ISO MGI:2183829 (PMID:12865332) RGD PMID:12865332 NCBI chr 4:102,805,495...102,866,914
Ensembl chr 4:102,805,510...102,866,911 		JBrowse link
G Fgf18 fibroblast growth factor 18 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:2178751 (PMID:17014841)		 Ensembl
RGD		 PMID:17014841 GO_REF:0000107 NCBI chr10:17,706,011...17,737,702
Ensembl chr10:17,706,174...17,736,818 		JBrowse link
G Hoxa11 homeobox A11 acts_upstream_of ISO MGI:96203 (PMID:14668414) RGD PMID:14668414 NCBI chr 4:81,342,527...81,346,189
Ensembl chr 4:81,342,528...81,346,232 		JBrowse link
G Hoxd11 homeobox D11 acts_upstream_of ISO MGI:96172 (PMID:14668414) RGD PMID:14668414 NCBI chr 3:59,584,840...59,587,257
Ensembl chr 3:59,585,039...59,586,783 		JBrowse link
G Mia3 MIA SH3 domain ER export factor 3 acts_upstream_of_or_within ISO MGI:5007248 (PMID:21606205) RGD PMID:21606205 NCBI chr13:94,970,421...95,012,071
Ensembl chr13:94,970,424...95,011,972 		JBrowse link
G Msx2 msh homeobox 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:1926381 (PMID:10742104)		 Ensembl
RGD		 PMID:10742104 GO_REF:0000107 NCBI chr17:11,097,214...11,102,879
Ensembl chr17:11,097,103...11,102,879 		JBrowse link
G Rarg retinoic acid receptor, gamma involved_in ISO (MGI:3848572|PMID:19389355) RGD PMID:19389355 MGI:3848572 NCBI chr 7:133,367,833...133,390,301
Ensembl chr 7:133,367,833...133,390,177 		JBrowse link
G Runx2 RUNX family transcription factor 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:2176466 (PMID:10213384)		 Ensembl
RGD		 PMID:10213384 GO_REF:0000107 NCBI chr 9:16,167,504...16,492,826
Ensembl chr 9:16,167,482...16,492,167 		JBrowse link
G Sfrp2 secreted frizzled-related protein 2 acts_upstream_of_or_within ISO MGI:3810257 (PMID:18729207) RGD PMID:18729207 NCBI chr 2:169,089,517...169,097,064
Ensembl chr 2:169,089,517...169,097,063 		JBrowse link
G Shox2 SHOX homeobox 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:3605739 (PMID:17481601)		 Ensembl
RGD		 PMID:17481601 GO_REF:0000107 NCBI chr 2:151,217,049...151,227,180
Ensembl chr 2:151,217,552...151,227,143 		JBrowse link
G Smpd3 sphingomyelin phosphodiesterase 3 acts_upstream_of_or_within ISO MGI:3575405 (PMID:17591962), (PMID:24505141) RGD PMID:17591962 PMID:24505141 NCBI chr19:34,162,337...34,245,786
Ensembl chr19:34,162,341...34,245,749 		JBrowse link
G Sox9 SRY-box transcription factor 9 acts_upstream_of_or_within ISO (PMID:18415932) RGD PMID:18415932 NCBI chr10:97,806,485...97,811,994
Ensembl chr10:97,806,485...97,811,994 		JBrowse link
G Sulf1 sulfatase 1 involved_in IEA
ISO
ISS		 GO_REF:0000104
(MGI:5306560|PMID:20479257)
GO_REF:0000024		 UniProt
RGD		 PMID:20479257 GO_REF:0000024 GO_REF:0000104 MGI:5306560 NCBI chr 5:6,362,894...6,526,174
Ensembl chr 5:6,362,911...6,525,584 		JBrowse link
G Sulf2 sulfatase 2 involved_in ISO (MGI:5306560|PMID:20479257) RGD PMID:20479257 MGI:5306560 NCBI chr 3:154,822,079...154,904,566
Ensembl chr 3:154,822,085...154,904,415 		JBrowse link
chondrocyte development involved in endochondral bone morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Serpinh1 serpin family H member 1 acts_upstream_of_or_within ISO MGI:2176070|MGI:5505265 (PMID:22492985) RGD PMID:22492985 NCBI chr 1:153,643,500...153,650,853
Ensembl chr 1:153,643,510...153,650,801 		JBrowse link
G Smpd3 sphingomyelin phosphodiesterase 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:1856877 (PMID:21788370)		 Ensembl
RGD		 PMID:21788370 GO_REF:0000107 NCBI chr19:34,162,337...34,245,786
Ensembl chr19:34,162,341...34,245,749 		JBrowse link
chondrocyte differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adamts12 ADAM metallopeptidase with thrombospondin type 1 motif, 12 involved_in ISO MGI:1347346 (PMID:29618652) RGD PMID:29618652 NCBI chr 2:60,032,873...60,327,629
Ensembl chr 2:60,032,873...60,327,629 		JBrowse link
G Adamts7 ADAM metallopeptidase with thrombospondin type 1 motif, 7 involved_in ISO MGI:2146046 (PMID:29618652) RGD PMID:29618652 NCBI chr 8:90,704,727...90,744,333
Ensembl chr 8:90,704,727...90,744,328 		JBrowse link
G Arid5a AT-rich interaction domain 5A acts_upstream_of_or_within ISO (PMID:21346191) RGD PMID:21346191 NCBI chr 9:38,534,612...38,549,467
Ensembl chr 9:38,534,590...38,547,597 		JBrowse link
G Bmp2 bone morphogenetic protein 2 involved_in IEA
ISO		 GO_REF:0000107
(PMID:16194878)		 Ensembl
RGD		 PMID:16194878 GO_REF:0000107 NCBI chr 3:120,812,660...120,822,579
Ensembl chr 3:120,812,882...120,821,397 		JBrowse link
G Bmp4 bone morphogenetic protein 4 involved_in
acts_upstream_of		 ISS
ISO
IEA		 GO_REF:0000024
(PMID:17481601)
(MGI:4418577|PMID:20059955)
GO_REF:0000107		 UniProt
RGD
Ensembl		 PMID:17481601 PMID:20059955 GO_REF:0000024 GO_REF:0000107 MGI:4418577 NCBI chr15:19,618,538...19,633,494
Ensembl chr15:19,618,542...19,623,306 		JBrowse link
G Bmpr1a bone morphogenetic protein receptor type 1A involved_in ISO (MGI:5522580|PMID:24098149) RGD PMID:24098149 MGI:5522580 NCBI chr16:9,736,390...9,829,825
Ensembl chr16:9,736,630...9,780,616 		JBrowse link
G Bmpr1b bone morphogenetic protein receptor type 1B involved_in
acts_upstream_of_or_within		 ISO (MGI:5522580|PMID:24098149)
MGI:1927616|MGI:95688 (PMID:18363966)		 RGD PMID:18363966 PMID:24098149 MGI:5522580 NCBI chr 2:230,538,252...230,871,077
Ensembl chr 2:230,541,558...230,871,368 		JBrowse link
G Ccn2 cellular communication network factor 2 acts_upstream_of_or_within ISO (PMID:15305294) RGD PMID:15305294 NCBI chr 1:20,802,199...20,805,315
Ensembl chr 1:20,802,199...20,805,734 		JBrowse link
G Ccn3 cellular communication network factor 3 involved_in ISO
IBA
ISS
IMP		 (PMID:21871891)
GO_REF:0000033
GO_REF:0000024		 RGD
GO_Central
UniProt		 PMID:21871891 PMID:21871891 GO_REF:0000024 GO_REF:0000033, RGD:10400852 NCBI chr 7:86,094,000...86,101,022
Ensembl chr 7:86,094,000...86,101,019 		JBrowse link
G Chrdl2 chordin-like 2 acts_upstream_of_or_within ISO (PMID:14660436) RGD PMID:14660436 NCBI chr 1:154,343,201...154,370,651
Ensembl chr 1:154,343,201...154,370,640 		JBrowse link
G Col11a2 collagen type XI alpha 2 chain acts_upstream_of_or_within ISO MGI:2154689 (PMID:11668593) RGD PMID:11668593 NCBI chr20:4,786,932...4,816,598
Ensembl chr20:4,786,929...4,815,985 		JBrowse link
G Col2a1 collagen type II alpha 1 chain acts_upstream_of_or_within
involved_in		 IEP
ISO
IEA		 MGI:2152978 (PMID:11680679), (PMID:7590256)
GO_REF:0000107
(MGI:86312|PMID:9119111)		 RGD
Ensembl		 PMID:7590256 PMID:9119111 PMID:11680679 PMID:21627568 GO_REF:0000107 MGI:86312, RGD:5134342 NCBI chr 7:129,098,489...129,127,560
Ensembl chr 7:129,098,786...129,127,546 		JBrowse link
G Col3a1 collagen type III alpha 1 chain involved_in ISO MGI:1857431 (PMID:31655293) RGD PMID:31655293 NCBI chr 9:47,374,611...47,410,547
Ensembl chr 9:47,374,593...47,410,547 		JBrowse link
G Col9a1 collagen type IX alpha 1 chain IEP RGD PMID:8992886 RGD:1600950 NCBI chr 9:26,585,034...26,668,222
Ensembl chr 9:26,585,034...26,668,213 		JBrowse link
G Creb3l2 cAMP responsive element binding protein 3-like 2 involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(MGI:4438315|PMID:19767744)		 UniProt
Ensembl
RGD		 PMID:19767744 GO_REF:0000024 GO_REF:0000107 MGI:4438315 NCBI chr 4:65,907,570...66,112,078
Ensembl chr 4:65,907,655...66,023,763 		JBrowse link
G Cst5 cystatin D acts_upstream_of_or_within ISO (PMID:13679380) RGD PMID:13679380 NCBI chr 3:137,573,194...137,577,754
Ensembl chr 3:137,573,194...137,577,754 		JBrowse link
G Ctnnb1 catenin beta 1 involved_in
acts_upstream_of		 IEA
ISO		 GO_REF:0000107
MGI:2148591|MGI:2148594|MGI:2446084|MGI:2450929 (PMID:15866163), (PMID:16818445)		 Ensembl
RGD		 PMID:15866163 PMID:16818445 GO_REF:0000107 NCBI chr 8:120,640,008...120,667,110
Ensembl chr 8:120,639,995...120,667,111 		JBrowse link
G Cytl1 cytokine like 1 acts_upstream_of_or_within ISO (PMID:17644814) RGD PMID:17644814 NCBI chr14:73,053,876...73,058,886
Ensembl chr14:73,053,877...73,058,886 		JBrowse link
G Dll4 delta like canonical Notch ligand 4 IEP RGD PMID:26872979 RGD:11521858 NCBI chr 3:106,317,114...106,327,004
Ensembl chr 3:106,316,986...106,326,931 		JBrowse link
G Ext1 exostosin glycosyltransferase 1 acts_upstream_of_or_within ISO (PMID:20080592), (PMID:20404326), (PMID:23458899), (PMID:28768899) RGD PMID:20080592 PMID:20404326 PMID:23458899 PMID:28768899 NCBI chr 7:84,375,769...84,654,625
Ensembl chr 7:84,375,784...84,655,357 		JBrowse link
G Ext2 exostosin glycosyltransferase 2 acts_upstream_of_or_within ISO MGI:3608690 (PMID:16236767) RGD PMID:16236767 NCBI chr 3:79,665,414...79,798,077
Ensembl chr 3:79,665,415...79,798,059 		JBrowse link
G Fgf18 fibroblast growth factor 18 acts_upstream_of ISO MGI:95524 (PMID:15781473) RGD PMID:15781473 NCBI chr10:17,706,011...17,737,702
Ensembl chr10:17,706,174...17,736,818 		JBrowse link
G Fgf9 fibroblast growth factor 9 acts_upstream_of_or_within ISO MGI:2135961|MGI:95522 (PMID:17544391) RGD PMID:17544391 NCBI chr15:32,208,993...32,254,952
Ensembl chr15:32,210,074...32,253,309 		JBrowse link
G Fgfr1 Fibroblast growth factor receptor 1 acts_upstream_of_or_within ISO MGI:104723 (PMID:17544391) RGD PMID:17544391 NCBI chr16:66,491,930...66,547,161
Ensembl chr16:66,494,042...66,547,350 		JBrowse link
G Fosl2 FOS like 2, AP-1 transcription factor subunit involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
(PMID:15509771)		 Ensembl
RGD		 PMID:15509771 GO_REF:0000107 NCBI chr 6:24,297,898...24,319,219
Ensembl chr 6:24,300,956...24,320,034 		JBrowse link
G Gdf5 growth differentiation factor 5 acts_upstream_of ISO (PMID:9885252) RGD PMID:9885252 NCBI chr 3:144,454,316...144,458,508
Ensembl chr 3:144,454,338...144,458,612 		JBrowse link
G Gli2 GLI family zinc finger 2 acts_upstream_of_or_within ISO MGI:1915509 (PMID:23333501) RGD PMID:23333501 NCBI chr13:29,946,882...30,163,589
Ensembl chr13:29,946,809...30,163,574 		JBrowse link
G Gli3 GLI family zinc finger 3 acts_upstream_of ISO MGI:96533 (PMID:16284117) RGD PMID:16284117 NCBI chr17:49,438,567...49,709,712
Ensembl chr17:49,438,567...49,709,712 		JBrowse link
G Gpld1 glycosylphosphatidylinositol specific phospholipase D1 involved_in ISS
ISO		 GO_REF:0000024
(MGI:3583476|PMID:15946906)		 UniProt
RGD		 PMID:15946906 GO_REF:0000024 MGI:3583476 NCBI chr17:40,084,427...40,132,035
Ensembl chr17:40,084,617...40,126,939 		JBrowse link
G Hes5 hes family bHLH transcription factor 5 NOT|involved_in ISS
ISO		 GO_REF:0000024
(MGI:5285816|PMID:17093926)		 UniProt
RGD		 PMID:17093926 GO_REF:0000024 MGI:5285816 NCBI chr 5:165,522,138...165,523,684
Ensembl chr 5:165,522,234...165,523,001 		JBrowse link
G Hif1a hypoxia inducible factor 1 subunit alpha involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:2386679 (PMID:15073147)		 Ensembl
RGD		 PMID:15073147 GO_REF:0000107 NCBI chr 6:92,624,059...92,669,262
Ensembl chr 6:92,624,390...92,669,261 		JBrowse link
G Hmga2 high mobility group AT-hook 2 involved_in ISO
ISS		 (PMID:21484705)
GO_REF:0000024		 RGD
UniProt		 PMID:21484705 GO_REF:0000024 NCBI chr 7:55,877,145...55,998,813
Ensembl chr 7:55,880,112...55,994,784 		JBrowse link
G Hoxa11 homeobox A11 acts_upstream_of ISO MGI:96203 (PMID:14668414) RGD PMID:14668414 NCBI chr 4:81,342,527...81,346,189
Ensembl chr 4:81,342,528...81,346,232 		JBrowse link
G Hoxd11 homeobox D11 acts_upstream_of ISO MGI:96172 (PMID:14668414) RGD PMID:14668414 NCBI chr 3:59,584,840...59,587,257
Ensembl chr 3:59,585,039...59,586,783 		JBrowse link
G Hspg2 heparan sulfate proteoglycan 2 acts_upstream_of_or_within ISO MGI:1934891 (PMID:10545953) RGD PMID:10545953 NCBI chr 5:149,677,437...149,778,594
Ensembl chr 5:149,677,476...149,778,594 		JBrowse link
G Ift80 intraflagellar transport 80 acts_upstream_of_or_within ISO MGI:95728 (PMID:23333501) RGD PMID:23333501 NCBI chr 2:153,144,707...153,240,024
Ensembl chr 2:153,145,795...153,240,024 		JBrowse link
G Ihh Indian hedgehog signaling molecule acts_upstream_of
acts_upstream_of_or_within		 ISO MGI:1934258 (PMID:16284117)
(PMID:15951842)		 RGD PMID:15951842 PMID:16284117 NCBI chr 9:76,504,315...76,510,532
Ensembl chr 9:76,504,315...76,510,532 		JBrowse link
G Ltbp3 latent transforming growth factor beta binding protein 3 acts_upstream_of ISO MGI:2180017 (PMID:11790802) RGD PMID:11790802 NCBI chr 1:203,029,412...203,045,975
Ensembl chr 1:203,029,877...203,045,975 		JBrowse link
G Mapk14 mitogen activated protein kinase 14 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
(PMID:17644814)
(MGI:5487758|PMID:17202865)		 Ensembl
RGD		 PMID:17202865 PMID:17644814 GO_REF:0000107 MGI:5487758 NCBI chr20:6,749,646...6,810,590
Ensembl chr20:6,749,670...6,810,589 		JBrowse link
G Matn1 matrilin 1 acts_upstream_of_or_within ISO MGI:2153042|MGI:3663272 (PMID:16877353) RGD PMID:16877353 NCBI chr 5:143,117,198...143,127,140
Ensembl chr 5:143,117,504...143,127,059 		JBrowse link
G Mef2c myocyte enhancer factor 2C acts_upstream_of_or_within ISO MGI:99533 (PMID:17336904) RGD PMID:17336904 NCBI chr 2:13,973,299...14,136,065
Ensembl chr 2:13,993,438...14,132,880 		JBrowse link
G Mef2d myocyte enhancer factor 2D involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:99458 (PMID:17336904)		 Ensembl
RGD		 PMID:17336904 GO_REF:0000107 NCBI chr 2:173,606,054...173,635,620
Ensembl chr 2:173,606,490...173,634,457 		JBrowse link
G Mustn1 musculoskeletal, embryonic nuclear protein 1 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr16:6,072,908...6,075,161
Ensembl chr16:6,072,833...6,075,161 		JBrowse link
G Nfib nuclear factor I/B involved_in ISS
ISO		 GO_REF:0000024
(MGI:5284771|PMID:17904922)		 UniProt
RGD		 PMID:17904922 GO_REF:0000024 MGI:5284771 NCBI chr 5:96,759,208...96,974,001
Ensembl chr 5:96,764,653...96,975,479 		JBrowse link
G Npr2 natriuretic peptide receptor 2 involved_in IEA
ISO		 GO_REF:0000107
MGI:3774275 (PMID:17728275)		 Ensembl
RGD		 PMID:17728275 GO_REF:0000107 NCBI chr 5:57,883,171...57,901,590
Ensembl chr 5:57,883,171...57,901,580 		JBrowse link
G Osr1 odd-skipped related transcription factor 1 involved_in ISO UniProtKB:Q91ZD1 (MGI:4950000|PMID:21262216) RGD PMID:21262216 MGI:4950000 NCBI chr 6:32,369,561...32,380,822
Ensembl chr 6:32,373,816...32,380,817 		JBrowse link
G Osr2 odd-skipped related transciption factor 2 involved_in ISO UniProtKB:Q9WVG7 (MGI:4950000|PMID:21262216) RGD PMID:21262216 MGI:4950000 NCBI chr 7:66,487,841...66,495,003
Ensembl chr 7:66,487,839...66,495,224 		JBrowse link
G Prkca protein kinase C, alpha acts_upstream_of_or_within ISO (PMID:17644814) RGD PMID:17644814 NCBI chr10:92,889,390...93,288,013
Ensembl chr10:92,894,012...93,288,012 		JBrowse link
G Pth1r parathyroid hormone 1 receptor involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:2154519|MGI:99829 (PMID:16476422), (PMID:9832460)		 Ensembl
RGD		 PMID:9832460 PMID:16476422 GO_REF:0000107 NCBI chr 8:110,693,910...110,725,458
Ensembl chr 8:110,697,485...110,719,729 		JBrowse link
G Pthlh parathyroid hormone-like hormone acts_upstream_of ISO MGI:2154515 (PMID:8895385) RGD PMID:8895385 NCBI chr 4:180,188,792...180,199,847
Ensembl chr 4:180,188,792...180,199,847 		JBrowse link
G Rb1 RB transcriptional corepressor 1 involved_in IEA
ISO		 GO_REF:0000107
(PMID:18638549)		 Ensembl
RGD		 PMID:18638549 GO_REF:0000107 NCBI chr15:48,371,295...48,502,473
Ensembl chr15:48,371,296...48,502,302 		JBrowse link
G Ror2 receptor tyrosine kinase-like orphan receptor 2 acts_upstream_of_or_within ISO MGI:2183225 (PMID:14745966) RGD PMID:14745966 NCBI chr17:11,972,830...12,148,152
Ensembl chr17:11,972,830...12,148,152 		JBrowse link
G Runx1 RUNX family transcription factor 1 involved_in IBA
IEA		 GO_REF:0000033
GO_REF:0000118		 GO_Central
TreeGrafter		 GO_REF:0000033 GO_REF:0000118 NCBI chr11:31,839,880...32,074,427
Ensembl chr11:31,843,764...32,074,542 		JBrowse link
G Runx2 RUNX family transcription factor 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000118
MGI:102672|MGI:2176466|MGI:97801 (PMID:16476422), (PMID:22916278)
MGI:2176465 (PMID:10072783)		 TreeGrafter
RGD		 PMID:10072783 PMID:16476422 PMID:22916278 GO_REF:0000118 NCBI chr 9:16,167,504...16,492,826
Ensembl chr 9:16,167,482...16,492,167 		JBrowse link
G Runx3 RUNX family transcription factor 3 involved_in
acts_upstream_of_or_within		 IBA
ISO		 GO_REF:0000033
MGI:99829 (PMID:22916278)		 GO_Central
RGD		 PMID:22916278 GO_REF:0000033 NCBI chr 5:147,360,587...147,419,161
Ensembl chr 5:147,360,994...147,419,156 		JBrowse link
G Scx scleraxis bHLH transcription factor involved_in ISO (MGI:4418577|PMID:20059955) RGD PMID:20059955 MGI:4418577 NCBI chr 7:108,176,608...108,178,626
Ensembl chr 7:108,176,608...108,178,626 		JBrowse link
G Shox2 SHOX homeobox 2 acts_upstream_of_or_within ISO (PMID:22916278) RGD PMID:22916278 NCBI chr 2:151,217,049...151,227,180
Ensembl chr 2:151,217,552...151,227,143 		JBrowse link
G Six2 SIX homeobox 2 acts_upstream_of_or_within ISO MGI:3691857 (PMID:20515681) RGD PMID:20515681 NCBI chr 6:8,974,859...8,981,345
Ensembl chr 6:8,967,157...8,981,193 		JBrowse link
G Slc26a2 solute carrier family 26 member 2 involved_in ISS
ISO		 GO_REF:0000024
(MGI:6708267|PMID:24302720)		 UniProt
RGD		 PMID:24302720 GO_REF:0000024 MGI:6708267 NCBI chr18:54,648,276...54,666,627
Ensembl chr18:54,652,951...54,666,626 		JBrowse link
G Slc39a14 solute carrier family 39 member 14 acts_upstream_of ISO (MGI:4950776|PMID:21445361) RGD PMID:21445361 MGI:4950776 NCBI chr15:45,376,806...45,423,549
Ensembl chr15:45,376,917...45,423,524 		JBrowse link
G Snx19 sorting nexin 19 involved_in
acts_upstream_of_or_within		 ISO (PMID:19877062) RGD PMID:19877062 NCBI chr 8:28,829,881...28,867,600
Ensembl chr 8:28,829,886...28,867,061 		JBrowse link
G Sox5 SRY-box transcription factor 5 involved_in ISS
ISO		 GO_REF:0000024
(MGI:2446758|PMID:11702786), (MGI:3037234|PMID:14993235)		 UniProt
RGD		 PMID:11702786 PMID:14993235 GO_REF:0000024 MGI:2446758 MGI:3037234 NCBI chr 4:176,781,375...177,736,833
Ensembl chr 4:176,785,892...177,736,852 		JBrowse link
G Sox6 SRY-box transcription factor 6 involved_in ISS
ISO		 GO_REF:0000024
(MGI:2446758|PMID:11702786), (MGI:3037234|PMID:14993235)		 UniProt
RGD		 PMID:11702786 PMID:14993235 GO_REF:0000024 MGI:2446758 MGI:3037234 NCBI chr 1:169,723,306...170,334,846
Ensembl chr 1:169,729,194...170,277,386 		JBrowse link
G Sox9 SRY-box transcription factor 9 involved_in
acts_upstream_of
acts_upstream_of_or_within		 ISS
ISO
IBA		 GO_REF:0000024
MGI:2158693 (PMID:11371614)
MGI:2385468 (PMID:12414734)
GO_REF:0000033
(MGI:3044231|PMID:15132997), (MGI:6414736|PMID:29644115), (MGI:6414737|PMID:32103177), (MGI:86312|PMID:9119111)		 UniProt
RGD
GO_Central		 PMID:9119111 PMID:11371614 PMID:12414734 PMID:15132997 PMID:29644115 More... GO_REF:0000024 GO_REF:0000033 MGI:3044231 MGI:6414736 MGI:6414737 MGI:86312 NCBI chr10:97,806,485...97,811,994
Ensembl chr10:97,806,485...97,811,994 		JBrowse link
G Tgfb1 transforming growth factor, beta 1 involved_in ISS
ISO		 GO_REF:0000024
(PMID:15040835)		 UniProt
RGD		 PMID:15040835 GO_REF:0000024 NCBI chr 1:81,196,532...81,212,848
Ensembl chr 1:81,196,532...81,212,847 		JBrowse link
G Tgfbi transforming growth factor, beta induced IEP RGD PMID:16546826 RGD:1599388 NCBI chr17:7,955,603...7,984,903
Ensembl chr17:7,955,603...7,985,240 		JBrowse link
G Trps1 transcriptional repressor GATA binding 1 acts_upstream_of_or_within ISO MGI:107191|MGI:95688 (PMID:18363966) RGD PMID:18363966 NCBI chr 7:81,916,668...82,142,733
Ensembl chr 7:81,921,601...82,141,905 		JBrowse link
G Twsg1 twisted gastrulation BMP signaling modulator 1 acts_upstream_of_or_within ISO MGI:3044357 (PMID:14681194) RGD PMID:14681194 NCBI chr 9:105,533,116...105,567,460
Ensembl chr 9:105,533,136...105,567,479 		JBrowse link
G Wnt10b Wnt family member 10B involved_in ISO (PMID:15135146) RGD PMID:15135146 NCBI chr 7:129,922,088...129,927,892
Ensembl chr 7:129,922,088...129,927,892 		JBrowse link
G Wnt2b Wnt family member 2B involved_in ISO (PMID:15135146) RGD PMID:15135146 NCBI chr 2:192,454,226...192,468,599
Ensembl chr 2:192,453,824...192,470,308 		JBrowse link
G Wnt5b Wnt family member 5B involved_in ISO (PMID:15135146) RGD PMID:15135146 NCBI chr 4:152,609,566...152,733,790
Ensembl chr 4:152,609,569...152,733,407 		JBrowse link
G Wnt7a Wnt family member 7A involved_in ISO (PMID:17202865) RGD PMID:17202865 NCBI chr 4:123,863,108...123,908,981
Ensembl chr 4:123,863,108...123,908,981 		JBrowse link
G Wnt9a Wnt family member 9A acts_upstream_of ISO MGI:3701350|MGI:88276 (PMID:16818445) RGD PMID:16818445 NCBI chr10:44,094,140...44,121,134
Ensembl chr10:44,094,140...44,121,133 		JBrowse link
chondrocyte differentiation involved in endochondral bone morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Axin2 axin 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:3579503 (PMID:19623616)		 Ensembl
RGD		 PMID:19623616 GO_REF:0000107 NCBI chr10:93,893,830...93,927,042
Ensembl chr10:93,899,245...93,926,231 		JBrowse link
G Ihh Indian hedgehog signaling molecule acts_upstream_of_or_within ISO (PMID:25639508) RGD PMID:25639508 NCBI chr 9:76,504,315...76,510,532
Ensembl chr 9:76,504,315...76,510,532 		JBrowse link
G Scube2 signal peptide, CUB domain and EGF like domain containing 2 acts_upstream_of_or_within ISO MGI:5698367 (PMID:25639508) RGD PMID:25639508 NCBI chr 1:163,831,876...163,899,925
Ensembl chr 1:163,832,015...163,899,393 		JBrowse link
G Sox9 SRY-box transcription factor 9 involved_in ISO
ISS		 (PMID:20676705)
GO_REF:0000024		 RGD
UniProt		 PMID:20676705 GO_REF:0000024 NCBI chr10:97,806,485...97,811,994
Ensembl chr10:97,806,485...97,811,994 		JBrowse link
G Trip11 thyroid hormone receptor interactor 11 acts_upstream_of_or_within ISO MGI:4829605 (PMID:20089971) RGD PMID:20089971 NCBI chr 6:120,995,242...121,067,693
Ensembl chr 6:120,998,733...121,067,781 		JBrowse link
chondrocyte hypertrophy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ext1 exostosin glycosyltransferase 1 acts_upstream_of_or_within ISO (PMID:23958822) RGD PMID:23958822 NCBI chr 7:84,375,769...84,654,625
Ensembl chr 7:84,375,784...84,655,357 		JBrowse link
G Mex3c mex-3 RNA binding family member C acts_upstream_of_or_within ISO MGI:3764947 (PMID:22357625) RGD PMID:22357625 NCBI chr18:67,167,600...67,188,595
Ensembl chr18:67,166,718...67,188,595 		JBrowse link
G Sox9 SRY-box transcription factor 9 involved_in ISS
ISO		 GO_REF:0000024
(MGI:4950303|PMID:21367821)		 UniProt
RGD		 PMID:21367821 GO_REF:0000024 MGI:4950303 NCBI chr10:97,806,485...97,811,994
Ensembl chr10:97,806,485...97,811,994 		JBrowse link
fat pad development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arid5b AT-rich interaction domain 5B acts_upstream_of_or_within ISO MGI:3771593 (PMID:14651970) RGD PMID:14651970 NCBI chr20:20,307,731...20,490,746
Ensembl chr20:20,307,731...20,487,433 		JBrowse link
G Arrdc3 arrestin domain containing 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:3877613 (PMID:21982743)		 Ensembl
RGD		 PMID:21982743 GO_REF:0000107 NCBI chr 2:11,137,464...11,149,978
Ensembl chr 2:11,137,460...11,149,978 		JBrowse link
G Bbs4 Bardet-Biedl syndrome 4 acts_upstream_of_or_within ISO MGI:3055492 (PMID:16794820) RGD PMID:16794820 NCBI chr 8:59,731,912...59,765,408
Ensembl chr 8:59,731,912...59,765,607 		JBrowse link
G Casr calcium-sensing receptor IEP RGD PMID:21940515 RGD:7205697 NCBI chr11:64,235,251...64,304,811
Ensembl chr11:64,235,251...64,304,811 		JBrowse link
G Dgat2 diacylglycerol O-acyltransferase 2 involved_in ISO
IEA		 (MGI:3778742|PMID:18252207)
GO_REF:0000107		 RGD
Ensembl		 PMID:18252207 GO_REF:0000107 MGI:3778742 NCBI chr 1:153,454,078...153,484,432
Ensembl chr 1:153,454,080...153,484,428 		JBrowse link
G Enpp1 ectonucleotide pyrophosphatase/phosphodiesterase 1 involved_in ISO MGI:6402836 (PMID:24770645) RGD PMID:24770645 NCBI chr 1:20,698,746...20,763,741
Ensembl chr 1:20,698,764...20,763,715 		JBrowse link
G Errfi1 ERBB receptor feedback inhibitor 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
(PMID:28053990)		 Ensembl
RGD		 PMID:28053990 GO_REF:0000107 NCBI chr 5:161,323,981...161,337,289
Ensembl chr 5:161,323,998...161,337,282 		JBrowse link
G Fosl2 FOS like 2, AP-1 transcription factor subunit involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:3521818 (PMID:24464219)		 Ensembl
RGD		 PMID:24464219 GO_REF:0000107 NCBI chr 6:24,297,898...24,319,219
Ensembl chr 6:24,300,956...24,320,034 		JBrowse link
G Hmga2 high mobility group AT-hook 2 acts_upstream_of_or_within ISO MGI:104663 (PMID:10742101) RGD PMID:10742101 NCBI chr 7:55,877,145...55,998,813
Ensembl chr 7:55,880,112...55,994,784 		JBrowse link
G Tbl1xr1 TBL1X/Y related 1 acts_upstream_of_or_within ISO MGI:5511131 (PMID:23499424) RGD PMID:23499424 NCBI chr 2:104,788,950...104,929,055
Ensembl chr 2:104,801,721...104,929,055 		JBrowse link
G Ubb ubiquitin B acts_upstream_of_or_within ISO MGI:3774112 (PMID:18299572) RGD PMID:18299572 NCBI chr10:47,247,630...47,249,335
Ensembl chr10:47,245,637...47,249,333 		JBrowse link
glomerular mesangial cell development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acta1 actin, alpha 1, skeletal muscle involved_in IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr19:51,883,709...51,886,735
Ensembl chr19:51,883,715...51,886,742 		JBrowse link
G Acta2 actin alpha 2, smooth muscle involved_in ISO
IEA		 (PMID:17464107)
GO_REF:0000107		 RGD
Ensembl		 PMID:17464107 GO_REF:0000107 NCBI chr 1:231,746,527...231,759,307
Ensembl chr 1:231,746,548...231,759,554 		JBrowse link
G Actc1 actin, alpha, cardiac muscle 1 involved_in IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr 3:100,811,987...100,817,523
Ensembl chr 3:100,811,987...100,817,523 		JBrowse link
G Actg2 actin gamma 2, smooth muscle involved_in IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr 4:116,021,832...116,046,475
Ensembl chr 4:116,021,832...116,046,465 		JBrowse link
G Foxc2 forkhead box C2 acts_upstream_of_or_within ISO MGI:1857740 (PMID:16498405) RGD PMID:16498405 NCBI chr19:49,186,034...49,188,736
Ensembl chr19:49,185,662...49,188,737 		JBrowse link
G Gpr4 G protein-coupled receptor 4 acts_upstream_of_or_within ISO MGI:3700206 (PMID:17145776) RGD PMID:17145776 NCBI chr 1:78,865,376...78,877,126
Ensembl chr 1:78,865,409...78,876,599 		JBrowse link
G Notch1 notch receptor 1 involved_in ISO (MGI:3576186|PMID:15821257) RGD PMID:15821257 MGI:3576186 NCBI chr 3:9,277,955...9,323,531
Ensembl chr 3:9,278,086...9,323,531 		JBrowse link
glomerular mesangial cell proliferation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Egr1 early growth response 1 involved_in IMP PMID:18723570 UniProt PMID:18723570 RGD:8553351 NCBI chr18:26,462,967...26,466,766
Ensembl chr18:26,462,981...26,466,766 		JBrowse link
growth plate cartilage axis specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Stc1 stanniocalcin 1 involved_in ISO (PMID:16377640) RGD PMID:16377640 NCBI chr15:44,299,591...44,311,695
Ensembl chr15:44,299,621...44,310,264 		JBrowse link
growth plate cartilage chondrocyte development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Col27a1 collagen type XXVII alpha 1 chain involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:5315593 (PMID:22206015)		 Ensembl
RGD		 PMID:22206015 GO_REF:0000107 NCBI chr 5:76,647,302...76,765,989
Ensembl chr 5:76,647,429...76,765,174 		JBrowse link
G Poc1a POC1 centriolar protein A acts_upstream_of_or_within ISO MGI:2135614 (PMID:26496357) RGD PMID:26496357 NCBI chr 8:106,922,058...106,991,678
Ensembl chr 8:106,922,978...106,991,089 		JBrowse link
G Tsku tsukushi, small leucine rich proteoglycan involved_in ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr 1:152,660,259...152,671,682
Ensembl chr 1:152,656,693...152,672,588 		JBrowse link
growth plate cartilage chondrocyte differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Anxa6 annexin A6 involved_in IEA GO_REF:0000118 TreeGrafter GO_REF:0000118 NCBI chr10:39,101,395...39,156,483
Ensembl chr10:39,097,109...39,156,433 		JBrowse link
G Atf2 activating transcription factor 2 involved_in IEA
ISO		 GO_REF:0000107
MGI:1857283 (PMID:18638549)		 Ensembl
RGD		 PMID:18638549 GO_REF:0000107 NCBI chr 3:58,718,323...58,795,280
Ensembl chr 3:58,718,332...58,795,236 		JBrowse link
G Ift80 intraflagellar transport 80 acts_upstream_of_or_within ISO MGI:3665440|MGI:5818514 (PMID:26098911) RGD PMID:26098911 NCBI chr 2:153,144,707...153,240,024
Ensembl chr 2:153,145,795...153,240,024 		JBrowse link
G Nppc natriuretic peptide C involved_in ISS
ISO		 GO_REF:0000024
(MGI:2177134|PMID:11259675)		 UniProt
RGD		 PMID:11259675 GO_REF:0000024 MGI:2177134 NCBI chr 9:87,320,051...87,324,251
Ensembl chr 9:87,320,051...87,324,251 		JBrowse link
growth plate cartilage chondrocyte growth term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cst5 cystatin D involved_in ISO MGI:3629665 (PMID:16680148) RGD PMID:16680148 NCBI chr 3:137,573,194...137,577,754
Ensembl chr 3:137,573,194...137,577,754 		JBrowse link
G Rarg retinoic acid receptor, gamma involved_in ISO (MGI:3848572|PMID:19389355) RGD PMID:19389355 MGI:3848572 NCBI chr 7:133,367,833...133,390,301
Ensembl chr 7:133,367,833...133,390,177 		JBrowse link
G Sox9 SRY-box transcription factor 9 involved_in ISS
ISO		 GO_REF:0000024
(MGI:5317468|PMID:22421045)		 UniProt
RGD		 PMID:22421045 GO_REF:0000024 MGI:5317468 NCBI chr10:97,806,485...97,811,994
Ensembl chr10:97,806,485...97,811,994 		JBrowse link
G Tgfbr2 transforming growth factor, beta receptor 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:2384513 (PMID:21420963)		 Ensembl
RGD		 PMID:21420963 GO_REF:0000107 NCBI chr 8:115,794,537...115,883,615
Ensembl chr 8:115,794,537...115,883,228 		JBrowse link
growth plate cartilage chondrocyte morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Matn1 matrilin 1 acts_upstream_of_or_within ISO MGI:2153042|MGI:3663272 (PMID:16877353) RGD PMID:16877353 NCBI chr 5:143,117,198...143,127,140
Ensembl chr 5:143,117,504...143,127,059 		JBrowse link
growth plate cartilage chondrocyte proliferation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atf2 activating transcription factor 2 involved_in IEA
ISO		 GO_REF:0000107
MGI:1857283 (PMID:18638549)		 Ensembl
RGD		 PMID:18638549 GO_REF:0000107 NCBI chr 3:58,718,323...58,795,280
Ensembl chr 3:58,718,332...58,795,236 		JBrowse link
G Cer1 cerberus 1, DAN family BMP antagonist involved_in ISO (MGI:5315688|PMID:19113921) RGD PMID:19113921 MGI:5315688 NCBI chr 5:97,306,427...97,309,783
Ensembl chr 5:97,306,431...97,309,783 		JBrowse link
G Nppc natriuretic peptide C involved_in ISS
ISO		 GO_REF:0000024
(MGI:2177134|PMID:11259675)		 UniProt
RGD		 PMID:11259675 GO_REF:0000024 MGI:2177134 NCBI chr 9:87,320,051...87,324,251
Ensembl chr 9:87,320,051...87,324,251 		JBrowse link
growth plate cartilage development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Col2a1 collagen type II alpha 1 chain IEP spheno-occipital synchondrosis RGD PMID:20591638 RGD:8661256 NCBI chr 7:129,098,489...129,127,560
Ensembl chr 7:129,098,786...129,127,546 		JBrowse link
G Col9a1 collagen type IX alpha 1 chain acts_upstream_of_or_within ISO MGI:2152964|MGI:88469|MGI:98737|MGI:98739 (PMID:18191556), (PMID:18467703) RGD PMID:18191556 PMID:18467703 NCBI chr 9:26,585,034...26,668,222
Ensembl chr 9:26,585,034...26,668,213 		JBrowse link
G Comp cartilage oligomeric matrix protein involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:2180787|MGI:3758741|MGI:88465|MGI:98737|MGI:98739 (PMID:17588960), (PMID:18191556), (PMID:18467703)		 Ensembl
RGD		 PMID:17588960 PMID:18191556 PMID:18467703 GO_REF:0000107 NCBI chr16:19,047,206...19,055,584
Ensembl chr16:19,047,207...19,055,845 		JBrowse link
G Fosl2 FOS like 2, AP-1 transcription factor subunit involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
(PMID:15509771)		 Ensembl
RGD		 PMID:15509771 GO_REF:0000107 NCBI chr 6:24,297,898...24,319,219
Ensembl chr 6:24,300,956...24,320,034 		JBrowse link
G Ift80 intraflagellar transport 80 acts_upstream_of_or_within ISO MGI:3665440|MGI:5818514 (PMID:26098911) RGD PMID:26098911 NCBI chr 2:153,144,707...153,240,024
Ensembl chr 2:153,145,795...153,240,024 		JBrowse link
G Mmp13 matrix metallopeptidase 13 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:98729 (PMID:21444811)		 Ensembl
RGD		 PMID:21444811 GO_REF:0000107 NCBI chr 8:4,497,960...4,508,239
Ensembl chr 8:4,497,960...4,508,239 		JBrowse link
G Npr2 natriuretic peptide receptor 2 involved_in IEA
ISO		 GO_REF:0000107
MGI:3774275|MGI:4358115 (PMID:17728275), (PMID:23065701)		 Ensembl
RGD		 PMID:17728275 PMID:23065701 GO_REF:0000107 NCBI chr 5:57,883,171...57,901,590
Ensembl chr 5:57,883,171...57,901,580 		JBrowse link
G Rara retinoic acid receptor, alpha acts_upstream_of_or_within ISO MGI:97858 (PMID:19389355) RGD PMID:19389355 NCBI chr10:83,883,490...83,928,932
Ensembl chr10:83,893,384...83,928,142 		JBrowse link
G Rarb retinoic acid receptor, beta acts_upstream_of_or_within ISO MGI:97858 (PMID:19389355) RGD PMID:19389355 NCBI chr15:8,700,533...9,051,288
Ensembl chr15:8,406,492...9,051,288 		JBrowse link
G Rarg retinoic acid receptor, gamma acts_upstream_of_or_within ISO MGI:97856|MGI:97857 (PMID:19389355) RGD PMID:19389355 NCBI chr 7:133,367,833...133,390,301
Ensembl chr 7:133,367,833...133,390,177 		JBrowse link
G Tgfbr2 transforming growth factor, beta receptor 2 acts_upstream_of_or_within ISO MGI:1340026 (PMID:21420963) RGD PMID:21420963 NCBI chr 8:115,794,537...115,883,615
Ensembl chr 8:115,794,537...115,883,228 		JBrowse link
G Thbs1 thrombospondin 1 acts_upstream_of_or_within ISO MGI:2154534|MGI:88465|MGI:88469|MGI:98739 (PMID:18467703) RGD PMID:18467703 NCBI chr 3:105,056,293...105,071,445
Ensembl chr 3:105,056,292...105,071,440 		JBrowse link
G Thbs3 thrombospondin 3 acts_upstream_of_or_within ISO MGI:3581964|MGI:88465|MGI:88469|MGI:98737 (PMID:18467703) RGD PMID:18467703 NCBI chr 2:174,621,788...174,633,594
Ensembl chr 2:174,621,812...174,633,594 		JBrowse link
G Zmpste24 zinc metallopeptidase STE24 acts_upstream_of_or_within ISO MGI:2180033 (PMID:11923874) RGD PMID:11923874 NCBI chr 5:134,627,218...134,660,360
Ensembl chr 5:134,627,229...134,660,110 		JBrowse link
lung connective tissue development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fosl2 FOS like 2, AP-1 transcription factor subunit involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:3757560 (PMID:31135379)		 Ensembl
RGD		 PMID:31135379 GO_REF:0000107 NCBI chr 6:24,297,898...24,319,219
Ensembl chr 6:24,300,956...24,320,034 		JBrowse link
G Rxfp1 relaxin family peptide receptor 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:3054831 (PMID:15256493)		 Ensembl
RGD		 PMID:15256493 GO_REF:0000107 NCBI chr 2:164,772,270...164,893,484
Ensembl chr 2:164,774,799...164,893,412 		JBrowse link
mammary gland fat development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Csf1 colony stimulating factor 1 acts_upstream_of_or_within ISO MGI:1856333 (PMID:10804170) RGD PMID:10804170 NCBI chr 2:195,377,215...195,396,608
Ensembl chr 2:195,377,215...195,411,704 		JBrowse link
mandibular condyle articular cartilage development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dspp dentin sialophosphoprotein acts_upstream_of_or_within IEP
ISO		 MGI:2653208 (PMID:23900597) RGD PMID:23900597 PMID:20097540 RGD:15039407 NCBI chr14:5,565,562...5,571,669
Ensembl chr14:5,565,629...5,571,672 		JBrowse link
metanephric capsule development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxd1 forkhead box D1 involved_in ISS
ISO		 GO_REF:0000024
(MGI:3525902|PMID:15634693)		 UniProt
RGD		 PMID:15634693 GO_REF:0000024 MGI:3525902 NCBI chr 2:29,702,558...29,704,978
Ensembl chr 2:29,702,558...29,704,978 		JBrowse link
metanephric capsule specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxd1 forkhead box D1 involved_in ISS
ISO
IEA		 GO_REF:0000024
(MGI:3525902|PMID:15634693)
GO_REF:0000107		 UniProt
RGD
Ensembl		 PMID:15634693 GO_REF:0000024 GO_REF:0000107 MGI:3525902 NCBI chr 2:29,702,558...29,704,978
Ensembl chr 2:29,702,558...29,704,978 		JBrowse link
metanephric glomerular mesangial cell development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pdgfb platelet derived growth factor subunit B involved_in ISS
ISO		 GO_REF:0000024
(MGI:3039044|PMID:15084468)		 UniProt
RGD		 PMID:15084468 GO_REF:0000024 MGI:3039044 NCBI chr 7:111,539,444...111,557,984
Ensembl chr 7:111,540,345...111,557,984 		JBrowse link
metanephric glomerular mesangial cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cd34 CD34 molecule involved_in ISO (PMID:1868864) RGD PMID:1868864 NCBI chr13:106,480,313...106,500,844
Ensembl chr13:106,480,043...106,499,832 		JBrowse link
metanephric glomerular mesangial cell proliferation involved in metanephros development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pdgfb platelet derived growth factor subunit B involved_in ISO (MGI:1289803|PMID:9693135) RGD PMID:9693135 MGI:1289803 NCBI chr 7:111,539,444...111,557,984
Ensembl chr 7:111,540,345...111,557,984 		JBrowse link
G Pdgfrb platelet derived growth factor receptor beta involved_in ISS
ISO		 GO_REF:0000024
(MGI:1289803|PMID:9693135)		 UniProt
RGD		 PMID:9693135 GO_REF:0000024 MGI:1289803 NCBI chr18:54,499,962...54,538,840
Ensembl chr18:54,499,964...54,538,843 		JBrowse link
metanephric glomerular mesangium development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pdgfrb platelet derived growth factor receptor beta involved_in ISO (MGI:1289803|PMID:9693135) RGD PMID:9693135 MGI:1289803 NCBI chr18:54,499,962...54,538,840
Ensembl chr18:54,499,964...54,538,843 		JBrowse link
negative regulation of adipose tissue development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Klf7 KLF transcription factor 7 involved_in ISO (PMID:16339272) RGD PMID:16339272 NCBI chr 9:65,433,683...65,526,372
Ensembl chr 9:65,437,167...65,526,261 		JBrowse link
G Lmna lamin A/C IMP RGD PMID:22119912 RGD:10003161 NCBI chr 2:173,939,751...173,960,423
Ensembl chr 2:173,939,751...173,960,423 		JBrowse link
G Mir138-1 microRNA 138-1 involved_in ISO (PMID:31769250) RGD PMID:31769250 NCBI chr 8:122,300,966...122,301,064
Ensembl chr 8:122,300,966...122,301,064 		JBrowse link
G Mir138-2 microRNA 138-2 involved_in ISO (PMID:31769250) RGD PMID:31769250 NCBI chr19:10,674,193...10,674,274
Ensembl chr19:10,674,193...10,674,274 		JBrowse link
G Parp1 poly (ADP-ribose) polymerase 1 involved_in ISO (PMID:32822587) RGD PMID:32822587 NCBI chr13:92,307,593...92,339,406
Ensembl chr13:92,307,586...92,339,404 		JBrowse link
G Pou4f2 POU class 4 homeobox 2 involved_in ISO (MGI:5804084|PMID:26670484) RGD PMID:26670484 MGI:5804084 NCBI chr19:29,486,686...29,490,327
Ensembl chr19:29,486,686...29,490,327 		JBrowse link
G Sirt1 sirtuin 1 involved_in ISO (PMID:23951196) RGD PMID:23951196 NCBI chr20:25,307,225...25,329,273
Ensembl chr20:25,306,917...25,329,260 		JBrowse link
G Spi1 Spi-1 proto-oncogene involved_in ISO (MGI:6508506|PMID:25409310) RGD PMID:25409310 MGI:6508506 NCBI chr 3:77,059,744...77,093,730
Ensembl chr 3:77,073,012...77,092,393 		JBrowse link
negative regulation of cartilage development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ctsk cathepsin K acts_upstream_of_or_within ISO MGI:2182131 (PMID:19834056) RGD PMID:19834056 NCBI chr 2:183,058,586...183,069,551
Ensembl chr 2:183,058,569...183,069,550 		JBrowse link
G Frzb frizzled-related protein acts_upstream_of_or_within ISO MGI:98958 (PMID:18991062) RGD PMID:18991062 NCBI chr 3:65,332,274...65,365,208
Ensembl chr 3:65,332,277...65,365,208 		JBrowse link
G Idua alpha-L-iduronidase acts_upstream_of_or_within ISO MGI:2176236 (PMID:19834056) RGD PMID:19834056 NCBI chr14:1,031,588...1,059,494
Ensembl chr14:1,032,171...1,046,522 		JBrowse link
G Lep leptin IDA RGD PMID:19876764 RGD:5128612 NCBI chr 4:57,661,127...57,675,262
Ensembl chr 4:57,661,131...57,675,262 		JBrowse link
G Mir21 microRNA 21 involved_in ISO (PMID:24577233) RGD PMID:24577233 NCBI chr10:71,405,257...71,405,348
Ensembl chr10:71,405,257...71,405,348 		JBrowse link
G Nog noggin involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
(PMID:10684250)		 Ensembl
RGD		 PMID:10684250 GO_REF:0000107 NCBI chr10:74,128,712...74,130,339
Ensembl chr10:74,128,712...74,130,339 		JBrowse link
G Rara retinoic acid receptor, alpha acts_upstream_of_or_within ISO (PMID:10684250) RGD PMID:10684250 NCBI chr10:83,883,490...83,928,932
Ensembl chr10:83,893,384...83,928,142 		JBrowse link
G Rarb retinoic acid receptor, beta acts_upstream_of_or_within ISO (PMID:10684250) RGD PMID:10684250 NCBI chr15:8,700,533...9,051,288
Ensembl chr15:8,406,492...9,051,288 		JBrowse link
G Rarg retinoic acid receptor, gamma acts_upstream_of_or_within ISO (PMID:10684250) RGD PMID:10684250 NCBI chr 7:133,367,833...133,390,301
Ensembl chr 7:133,367,833...133,390,177 		JBrowse link
G Tgfb2 transforming growth factor, beta 2 acts_upstream_of_or_within ISO MGI:1888389 (PMID:21780244) RGD PMID:21780244 NCBI chr13:98,160,075...98,261,771
Ensembl chr13:98,160,087...98,261,405 		JBrowse link
G Wnt9a Wnt family member 9A acts_upstream_of_or_within ISO (PMID:19047045) RGD PMID:19047045 NCBI chr10:44,094,140...44,121,134
Ensembl chr10:44,094,140...44,121,133 		JBrowse link
negative regulation of chondrocyte development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pthlh parathyroid hormone-like hormone acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:90087)
GO_REF:0000107		 RGD
Ensembl		 PMID:90087 GO_REF:0000107 NCBI chr 4:180,188,792...180,199,847
Ensembl chr 4:180,188,792...180,199,847 		JBrowse link
G Rflna refilin A involved_in
acts_upstream_of_or_within		 IBA
ISO		 GO_REF:0000033
MGI:1923816 (PMID:24436304)		 GO_Central
RGD		 PMID:24436304 GO_REF:0000033 NCBI chr12:31,633,360...31,642,313
Ensembl chr12:31,633,361...31,642,317 		JBrowse link
G Rflnb refilin B involved_in
acts_upstream_of_or_within		 IBA
ISO		 GO_REF:0000033
MGI:1920371 (PMID:24436304)		 GO_Central
RGD		 PMID:24436304 GO_REF:0000033 NCBI chr10:60,893,693...60,899,970
Ensembl chr10:60,893,713...60,899,976 		JBrowse link
negative regulation of chondrocyte differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adamts12 ADAM metallopeptidase with thrombospondin type 1 motif, 12 involved_in ISO (PMID:22247065) RGD PMID:22247065 NCBI chr 2:60,032,873...60,327,629
Ensembl chr 2:60,032,873...60,327,629 		JBrowse link
G Adamts7 ADAM metallopeptidase with thrombospondin type 1 motif, 7 involved_in ISO (PMID:22247065) RGD PMID:22247065 NCBI chr 8:90,704,727...90,744,333
Ensembl chr 8:90,704,727...90,744,328 		JBrowse link
G Bmp4 bone morphogenetic protein 4 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
(PMID:17481601)		 Ensembl
RGD		 PMID:17481601 GO_REF:0000107 NCBI chr15:19,618,538...19,633,494
Ensembl chr15:19,618,542...19,623,306 		JBrowse link
G Ccn4 cellular communication network factor 4 involved_in IEA
ISO		 GO_REF:0000107
(MGI:6294593|PMID:15331410)		 Ensembl
RGD		 PMID:15331410 GO_REF:0000107 MGI:6294593 NCBI chr 7:98,645,238...98,677,253
Ensembl chr 7:98,645,182...98,677,248 		JBrowse link
G Chadl chondroadherin-like involved_in ISO (MGI:5617405|PMID:25451920) RGD PMID:25451920 MGI:5617405 NCBI chr 7:113,205,323...113,218,678
Ensembl chr 7:113,210,748...113,217,272 		JBrowse link
G Ctnnb1 catenin beta 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:2148591|MGI:2148594|MGI:2446084|MGI:2450929 (PMID:15866163), (PMID:16818445)		 Ensembl
RGD		 PMID:15866163 PMID:16818445 GO_REF:0000107 NCBI chr 8:120,640,008...120,667,110
Ensembl chr 8:120,639,995...120,667,111 		JBrowse link
G Efemp1 EGF containing fibulin extracellular matrix protein 1 involved_in ISO
IEA
ISS		 (PMID:20005202)
GO_REF:0000107
GO_REF:0000024		 RGD
Ensembl
UniProt		 PMID:20005202 GO_REF:0000024 GO_REF:0000107 NCBI chr14:102,610,813...102,690,027
Ensembl chr14:102,610,908...102,690,018 		JBrowse link
G Gdf5 growth differentiation factor 5 involved_in ISO (PMID:21976273) RGD PMID:21976273 NCBI chr 3:144,454,316...144,458,508
Ensembl chr 3:144,454,338...144,458,612 		JBrowse link
G Gli2 GLI family zinc finger 2 acts_upstream_of_or_within ISO MGI:1857509 (PMID:17328886) RGD PMID:17328886 NCBI chr13:29,946,882...30,163,589
Ensembl chr13:29,946,809...30,163,574 		JBrowse link
G Gli3 GLI family zinc finger 3 acts_upstream_of_or_within ISO MGI:96533 (PMID:16284117) RGD PMID:16284117 NCBI chr17:49,438,567...49,709,712
Ensembl chr17:49,438,567...49,709,712 		JBrowse link
G Grem1 gremlin 1, DAN family BMP antagonist involved_in ISO (PMID:10556075) RGD PMID:10556075 NCBI chr 3:100,512,317...100,524,001
Ensembl chr 3:100,512,313...100,524,082 		JBrowse link
G Ihh Indian hedgehog signaling molecule acts_upstream_of_or_within ISO MGI:1934258 (PMID:16284117) RGD PMID:16284117 NCBI chr 9:76,504,315...76,510,532
Ensembl chr 9:76,504,315...76,510,532 		JBrowse link
G Ltbp3 latent transforming growth factor beta binding protein 3 acts_upstream_of_or_within ISO MGI:2180017 (PMID:11790802) RGD PMID:11790802 NCBI chr 1:203,029,412...203,045,975
Ensembl chr 1:203,029,877...203,045,975 		JBrowse link
G Mkx mohawk homeobox IMP RGD PMID:27370800 RGD:40924660 NCBI chr17:55,077,073...55,156,877
Ensembl chr17:55,077,540...55,156,124 		JBrowse link
G Nkx3-2 NK3 homeobox 2 involved_in ISO (MGI:3617032|PMID:16421188) RGD PMID:16421188 MGI:3617032 NCBI chr14:69,183,795...69,186,182
Ensembl chr14:69,183,820...69,186,061 		JBrowse link
G Pth parathyroid hormone involved_in IMP PMID:11604398 CAFA PMID:11604398 RGD:12793028 NCBI chr 1:167,508,121...167,511,530
Ensembl chr 1:167,508,598...167,511,530 		JBrowse link
G Pthlh parathyroid hormone-like hormone acts_upstream_of_or_within ISO (PMID:90087)
MGI:2154515|MGI:95728 (PMID:17328886), (PMID:8895385)		 RGD PMID:90087 PMID:8895385 PMID:17328886 NCBI chr 4:180,188,792...180,199,847
Ensembl chr 4:180,188,792...180,199,847 		JBrowse link
G Ptpn11 protein tyrosine phosphatase, non-receptor type 11 involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(MGI:6414736|PMID:29644115)		 UniProt
Ensembl
RGD		 PMID:29644115 GO_REF:0000024 GO_REF:0000107 MGI:6414736 NCBI chr12:35,365,436...35,424,925
Ensembl chr12:35,383,144...35,424,925 		JBrowse link
G Rarb retinoic acid receptor, beta acts_upstream_of_or_within ISO (PMID:10684250) RGD PMID:10684250 NCBI chr15:8,700,533...9,051,288
Ensembl chr15:8,406,492...9,051,288 		JBrowse link
G Rarg retinoic acid receptor, gamma acts_upstream_of_or_within ISO (PMID:10684250) RGD PMID:10684250 NCBI chr 7:133,367,833...133,390,301
Ensembl chr 7:133,367,833...133,390,177 		JBrowse link
G Snai2 snail family transcriptional repressor 2 involved_in ISO (PMID:19756381) RGD PMID:19756381 NCBI chr11:86,182,788...86,186,203
Ensembl chr11:86,181,909...86,186,200 		JBrowse link
G Sox9 SRY-box transcription factor 9 involved_in
acts_upstream_of_or_within		 ISS
ISO		 GO_REF:0000024
MGI:2158693 (PMID:11371614)		 UniProt
RGD		 PMID:11371614 GO_REF:0000024 NCBI chr10:97,806,485...97,811,994
Ensembl chr10:97,806,485...97,811,994 		JBrowse link
G Tgfbr1 transforming growth factor, beta receptor 1 involved_in ISO
IEA		 (MGI:3848261|PMID:19494318)
GO_REF:0000107		 RGD
Ensembl		 PMID:19494318 GO_REF:0000107 MGI:3848261 NCBI chr 5:61,653,773...61,710,777
Ensembl chr 5:61,653,233...61,710,777 		JBrowse link
G Wnt9a Wnt family member 9A acts_upstream_of_or_within ISO MGI:3701350|MGI:88276 (PMID:16818445) RGD PMID:16818445 NCBI chr10:44,094,140...44,121,134
Ensembl chr10:44,094,140...44,121,133 		JBrowse link
negative regulation of glomerular mesangial cell proliferation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp4 bone morphogenetic protein 4 involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:17244894)		 UniProt
Ensembl
RGD		 PMID:17244894 GO_REF:0000024 GO_REF:0000107 NCBI chr15:19,618,538...19,633,494
Ensembl chr15:19,618,542...19,623,306 		JBrowse link
G Bmp7 bone morphogenetic protein 7 involved_in ISO (PMID:17244894) RGD PMID:17244894 NCBI chr 3:161,639,915...161,716,938
Ensembl chr 3:161,516,462...161,716,788 		JBrowse link
G Ifng interferon gamma IMP RGD PMID:1906384 RGD:10755757 NCBI chr 7:53,903,339...53,907,375
Ensembl chr 7:53,903,337...53,907,375 		JBrowse link
G Mir125a microRNA 125a involved_in ISO (PMID:26563755) RGD PMID:26563755 NCBI chr 1:58,677,626...58,677,710
Ensembl chr 1:58,677,626...58,677,710 		JBrowse link
negative regulation of growth plate cartilage chondrocyte proliferation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dspp dentin sialophosphoprotein acts_upstream_of_or_within ISO MGI:2653208 (PMID:26972716) RGD PMID:26972716 NCBI chr14:5,565,562...5,571,669
Ensembl chr14:5,565,629...5,571,672 		JBrowse link
negative regulation of metanephric glomerular mesangial cell proliferation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Wt1 WT1 transcription factor involved_in ISS
ISO		 GO_REF:0000024
(MGI:1332959|PMID:10077614)		 UniProt
RGD		 PMID:10077614 GO_REF:0000024 MGI:1332959 NCBI chr 3:91,566,540...91,613,653
Ensembl chr 3:91,567,001...91,613,643 		JBrowse link
positive regulation of adipose tissue development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Akt2 AKT serine/threonine kinase 2 involved_in ISO (PMID:23951196) RGD PMID:23951196 NCBI chr 1:82,877,228...82,933,828
Ensembl chr 1:82,883,547...82,933,817 		JBrowse link
G Ghrl ghrelin and obestatin prepropeptide IDA RGD PMID:14551228 RGD:12904887 NCBI chr 4:146,865,712...146,869,621
Ensembl chr 4:146,865,712...146,869,621 		JBrowse link
G Lpl lipoprotein lipase involved_in ISO
IEA		 (PMID:31769250)
GO_REF:0000107		 RGD
Ensembl		 PMID:31769250 GO_REF:0000107 NCBI chr16:20,830,055...20,853,855
Ensembl chr16:20,829,465...20,855,249 		JBrowse link
G Mir103a1 microRNA 103a-1 acts_upstream_of_or_within ISO (PMID:19188425) RGD PMID:19188425 NCBI chr10:20,244,412...20,244,497
Ensembl chr10:20,244,412...20,244,497 		JBrowse link
G Mir103a2 microRNA 103a-2 acts_upstream_of_or_within ISO (PMID:19188425) RGD PMID:19188425 NCBI chr 3:118,510,194...118,510,279
Ensembl chr 3:118,510,194...118,510,279 		JBrowse link
G Mir143 microRNA 143 acts_upstream_of_or_within ISO (PMID:19188425) RGD PMID:19188425 NCBI chr18:55,101,006...55,101,110
Ensembl chr18:55,101,006...55,101,110 		JBrowse link
G Nr1h4 nuclear receptor subfamily 1, group H, member 4 involved_in ISO
IEA		 (MGI:3640632|PMID:16446356)
GO_REF:0000107		 RGD
Ensembl		 PMID:16446356 GO_REF:0000107 MGI:3640632 NCBI chr 7:23,846,122...23,942,085
Ensembl chr 7:23,846,122...23,942,047 		JBrowse link
G Pparg peroxisome proliferator-activated receptor gamma acts_upstream_of ISO (MGI:6508506|PMID:25409310) RGD PMID:25409310 MGI:6508506 NCBI chr 4:148,423,102...148,548,471
Ensembl chr 4:148,423,194...148,548,468 		JBrowse link
G Prkaa1 protein kinase AMP-activated catalytic subunit alpha 1 involved_in ISO (PMID:32822587) RGD PMID:32822587 NCBI chr 2:54,240,298...54,275,978
Ensembl chr 2:54,240,137...54,275,978 		JBrowse link
G Sh3pxd2b SH3 and PX domains 2B involved_in ISO (MGI:5800302|PMID:27711054) RGD PMID:27711054 MGI:5800302 NCBI chr10:16,918,611...17,027,499
Ensembl chr10:16,918,679...17,005,170 		JBrowse link
G Sirt1 sirtuin 1 involved_in ISO
IEA		 (MGI:5319292|PMID:22315447)
GO_REF:0000107		 RGD
Ensembl		 PMID:22315447 GO_REF:0000107 MGI:5319292 NCBI chr20:25,307,225...25,329,273
Ensembl chr20:25,306,917...25,329,260 		JBrowse link
G Sorl1 sortilin related receptor 1 involved_in ISO (PMID:27322061)
(MGI:5811185|PMID:27322061)		 RGD PMID:27322061 MGI:5811185 NCBI chr 8:42,341,704...42,504,435
Ensembl chr 8:42,341,704...42,504,513 		JBrowse link
G Trpm4 transient receptor potential cation channel, subfamily M, member 4 IMP RGD PMID:23081848 RGD:10003033 NCBI chr 1:95,781,805...95,812,095
Ensembl chr 1:95,782,000...95,812,532 		JBrowse link
positive regulation of cartilage development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp1 bone morphogenetic protein 1 acts_upstream_of_or_within ISO (PMID:3201241) RGD PMID:3201241 NCBI chr15:45,551,603...45,595,862
Ensembl chr15:45,551,603...45,595,776 		JBrowse link
G Bmp10 bone morphogenetic protein 10 involved_in ISO
IEA		 (MGI:5621263|PMID:19956691)
GO_REF:0000107		 RGD
Ensembl		 PMID:19956691 GO_REF:0000107 MGI:5621263 NCBI chr 4:119,872,066...119,877,694
Ensembl chr 4:119,872,045...119,878,627 		JBrowse link
G Bmp2 bone morphogenetic protein 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
(PMID:10684250)
(PMID:3201241)		 Ensembl
RGD		 PMID:3201241 PMID:10684250 GO_REF:0000107 NCBI chr 3:120,812,660...120,822,579
Ensembl chr 3:120,812,882...120,821,397 		JBrowse link
G Bmp4 bone morphogenetic protein 4 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:3201241)
GO_REF:0000107		 RGD
Ensembl		 PMID:3201241 GO_REF:0000107 NCBI chr15:19,618,538...19,633,494
Ensembl chr15:19,618,542...19,623,306 		JBrowse link
G Bmpr2 bone morphogenetic protein receptor type 2 involved_in ISS GO_REF:0000024 AgBase GO_REF:0000024 NCBI chr 9:61,192,718...61,307,280
Ensembl chr 9:61,190,566...61,301,809 		JBrowse link
G Ccn1 cellular communication network factor 1 acts_upstream_of_or_within ISO (PMID:9441684) RGD PMID:9441684 NCBI chr 2:234,562,410...234,565,370
Ensembl chr 2:234,562,408...234,565,484 		JBrowse link
G Gdf2 growth differentiation factor 2 involved_in ISO (MGI:5621263|PMID:19956691) RGD PMID:19956691 MGI:5621263 NCBI chr16:9,255,430...9,261,429
Ensembl chr16:9,255,430...9,261,429 		JBrowse link
G Mdk midkine involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(MGI:5693192|PMID:25551381)		 UniProt
Ensembl
RGD		 PMID:25551381 GO_REF:0000024 GO_REF:0000107 MGI:5693192 NCBI chr 3:77,901,134...77,903,997
Ensembl chr 3:77,901,158...77,903,130 		JBrowse link
G Scx scleraxis bHLH transcription factor involved_in ISO (MGI:1343990|PMID:10477299) RGD PMID:10477299 MGI:1343990 NCBI chr 7:108,176,608...108,178,626
Ensembl chr 7:108,176,608...108,178,626 		JBrowse link
G Smad1 SMAD family member 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
(PMID:19251704)		 Ensembl
RGD		 PMID:19251704 GO_REF:0000107 NCBI chr19:28,513,130...28,573,665
Ensembl chr19:28,513,131...28,573,651 		JBrowse link
G Sox5 SRY-box transcription factor 5 involved_in ISO (PMID:21401405) RGD PMID:21401405 NCBI chr 4:176,781,375...177,736,833
Ensembl chr 4:176,785,892...177,736,852 		JBrowse link
G Sox6 SRY-box transcription factor 6 involved_in ISO (PMID:21401405) RGD PMID:21401405 NCBI chr 1:169,723,306...170,334,846
Ensembl chr 1:169,729,194...170,277,386 		JBrowse link
G Sox9 SRY-box transcription factor 9 involved_in
acts_upstream_of_or_within		 ISO
ISS		 (PMID:21401405), (PMID:29503843)
(PMID:19047045)
GO_REF:0000024		 RGD
UniProt		 PMID:19047045 PMID:21401405 PMID:29503843 GO_REF:0000024 NCBI chr10:97,806,485...97,811,994
Ensembl chr10:97,806,485...97,811,994 		JBrowse link
G Wnt5a Wnt family member 5A involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
(PMID:18991062)		 Ensembl
RGD		 PMID:18991062 GO_REF:0000107 NCBI chr16:3,697,032...3,718,230
Ensembl chr16:3,697,032...3,718,234 		JBrowse link
G Zbtb16 zinc finger and BTB domain containing 16 involved_in ISO
ISS		 (PMID:21547890)
GO_REF:0000024		 RGD
UniProt		 PMID:21547890 GO_REF:0000024 NCBI chr 8:48,989,376...49,177,011
Ensembl chr 8:48,994,566...49,177,011 		JBrowse link
positive regulation of chondrocyte development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hoxa11 homeobox A11 acts_upstream_of_or_within ISO MGI:96203 (PMID:14668414) RGD PMID:14668414 NCBI chr 4:81,342,527...81,346,189
Ensembl chr 4:81,342,528...81,346,232 		JBrowse link
G Hoxd11 homeobox D11 acts_upstream_of_or_within ISO MGI:96172 (PMID:14668414) RGD PMID:14668414 NCBI chr 3:59,584,840...59,587,257
Ensembl chr 3:59,585,039...59,586,783 		JBrowse link
positive regulation of chondrocyte differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp6 bone morphogenetic protein 6 IDA RGD PMID:23077084 RGD:7242190 NCBI chr17:26,318,121...26,469,691
Ensembl chr17:26,318,569...26,470,365 		JBrowse link
G Fgf18 fibroblast growth factor 18 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:95524 (PMID:15781473)		 Ensembl
RGD		 PMID:15781473 GO_REF:0000107 NCBI chr10:17,706,011...17,737,702
Ensembl chr10:17,706,174...17,736,818 		JBrowse link
G Gdf5 growth differentiation factor 5 involved_in
acts_upstream_of_or_within		 ISO (PMID:21976273), (PMID:24098149)
MGI:1927616 (PMID:18363966), (PMID:9885252)		 RGD PMID:9885252 PMID:18363966 PMID:21976273 PMID:24098149 NCBI chr 3:144,454,316...144,458,508
Ensembl chr 3:144,454,338...144,458,612 		JBrowse link
G Gdf6 growth differentiation factor 6 involved_in ISO
ISS		 (PMID:26643732)
GO_REF:0000024		 RGD
UniProt		 PMID:26643732 GO_REF:0000024 NCBI chr 5:22,996,246...23,012,567
Ensembl chr 5:22,996,246...23,012,567 		JBrowse link
G Gli3 GLI family zinc finger 3 acts_upstream_of_or_within ISO MGI:1856276 (PMID:17328886) RGD PMID:17328886 NCBI chr17:49,438,567...49,709,712
Ensembl chr17:49,438,567...49,709,712 		JBrowse link
G Hoxa11 homeobox A11 acts_upstream_of_or_within ISO MGI:96203 (PMID:14668414) RGD PMID:14668414 NCBI chr 4:81,342,527...81,346,189
Ensembl chr 4:81,342,528...81,346,232 		JBrowse link
G Hoxd11 homeobox D11 acts_upstream_of_or_within ISO MGI:96172 (PMID:14668414) RGD PMID:14668414 NCBI chr 3:59,584,840...59,587,257
Ensembl chr 3:59,585,039...59,586,783 		JBrowse link
G Loxl2 lysyl oxidase-like 2 involved_in IEA
ISO
ISS		 GO_REF:0000107
(MGI:5320274|PMID:21071451)
GO_REF:0000024		 Ensembl
RGD
UniProt		 PMID:21071451 GO_REF:0000024 GO_REF:0000107 MGI:5320274 NCBI chr15:44,683,449...44,773,067
Ensembl chr15:44,683,880...44,773,067 		JBrowse link
G Mustn1 musculoskeletal, embryonic nuclear protein 1 acts_upstream_of_or_within ISO (PMID:19410023) RGD PMID:19410023 NCBI chr16:6,072,908...6,075,161
Ensembl chr16:6,072,833...6,075,161 		JBrowse link
G Pkdcc protein kinase domain containing, cytoplasmic involved_in ISO (MGI:3813934|PMID:19097194), (MGI:4438146|PMID:19465597) RGD PMID:19097194 PMID:19465597 MGI:3813934 MGI:4438146 NCBI chr 6:11,455,686...11,465,002
Ensembl chr 6:11,455,686...11,465,556 		JBrowse link
G Por cytochrome p450 oxidoreductase IMP RGD PMID:19264869 RGD:2316785 NCBI chr12:20,951,058...20,999,198
Ensembl chr12:20,951,058...20,999,245 		JBrowse link
G Prkg2 protein kinase cGMP-dependent 2 IGI RGD PMID:15466490 RGD:150429792 NCBI chr14:10,559,882...10,668,479
Ensembl chr14:10,559,882...10,666,888 		JBrowse link
G Rela RELA proto-oncogene, NF-kB subunit IMP RGD PMID:17884819 RGD:2298851 NCBI chr 1:202,925,001...202,935,484
Ensembl chr 1:202,924,945...202,935,484 		JBrowse link
G Runx2 RUNX family transcription factor 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:2176465 (PMID:10072783)		 Ensembl
RGD		 PMID:10072783 GO_REF:0000107 NCBI chr 9:16,167,504...16,492,826
Ensembl chr 9:16,167,482...16,492,167 		JBrowse link
G Smad3 SMAD family member 3 involved_in ISO (MGI:5285145|PMID:21035443) RGD PMID:21035443 MGI:5285145 NCBI chr 8:64,126,829...64,236,960
Ensembl chr 8:64,110,039...64,236,960 		JBrowse link
G Sox5 SRY-box transcription factor 5 involved_in ISO
IBA
IEA		 (PMID:21401405)
GO_REF:0000033
GO_REF:0000118
(MGI:5285147|PMID:20940257)		 RGD
GO_Central
TreeGrafter		 PMID:20940257 PMID:21401405 GO_REF:0000033 GO_REF:0000118 MGI:5285147 NCBI chr 4:176,781,375...177,736,833
Ensembl chr 4:176,785,892...177,736,852 		JBrowse link
G Sox6 SRY-box transcription factor 6 involved_in ISO
IBA
IEA		 (PMID:21401405)
GO_REF:0000033
GO_REF:0000118
GO_REF:0000107
(MGI:5285147|PMID:20940257)		 RGD
GO_Central
TreeGrafter
Ensembl		 PMID:20940257 PMID:21401405 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 MGI:5285147 NCBI chr 1:169,723,306...170,334,846
Ensembl chr 1:169,729,194...170,277,386 		JBrowse link
G Sox9 SRY-box transcription factor 9 involved_in ISO
IBA
ISS		 (PMID:20676705), (PMID:21401405)
GO_REF:0000033
(MGI:4950303|PMID:21367821), (MGI:5285147|PMID:20940257)
GO_REF:0000024		 RGD
GO_Central
UniProt		 PMID:20676705 PMID:20940257 PMID:21367821 PMID:21401405 GO_REF:0000024 GO_REF:0000033 MGI:4950303 MGI:5285147 NCBI chr10:97,806,485...97,811,994
Ensembl chr10:97,806,485...97,811,994 		JBrowse link
G Thrb thyroid hormone receptor beta IDA RGD PMID:15647824 RGD:1601663 NCBI chr15:7,685,180...8,031,920
Ensembl chr15:7,685,180...7,882,916 		JBrowse link
G Zbtb16 zinc finger and BTB domain containing 16 involved_in ISO
ISS		 (PMID:21547890)
GO_REF:0000024		 RGD
UniProt		 PMID:21547890 GO_REF:0000024 NCBI chr 8:48,989,376...49,177,011
Ensembl chr 8:48,994,566...49,177,011 		JBrowse link
G Zfp219 zinc finger protein 219 involved_in ISO (MGI:5285147|PMID:20940257) RGD PMID:20940257 MGI:5285147 NCBI chr15:24,695,831...24,710,039
Ensembl chr15:24,695,837...24,710,030 		JBrowse link
positive regulation of chondrocyte hypertrophy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Smad7 SMAD family member 7 involved_in IEA
ISO		 GO_REF:0000107
(MGI:6377914|PMID:29503843)		 Ensembl
RGD		 PMID:29503843 GO_REF:0000107 MGI:6377914 NCBI chr18:68,988,429...69,016,774
Ensembl chr18:68,988,429...69,016,765 		JBrowse link
positive regulation of glomerular mesangial cell proliferation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G C3ar1 complement C3a receptor 1 IMP RGD PMID:23713944 RGD:7411623 NCBI chr 4:156,074,747...156,084,680
Ensembl chr 4:156,075,389...156,084,701 		JBrowse link
G Cflar CASP8 and FADD-like apoptosis regulator IMP RGD PMID:24691542 RGD:11341715 NCBI chr 9:60,185,338...60,236,173
Ensembl chr 9:60,185,452...60,237,034 		JBrowse link
G Il6r interleukin 6 receptor involved_in ISO
IEA		 (PMID:26563755)
GO_REF:0000107		 RGD
Ensembl		 PMID:26563755 GO_REF:0000107 NCBI chr 2:175,289,157...175,347,719
Ensembl chr 2:175,298,686...175,347,536 		JBrowse link
G Itgb3 integrin subunit beta 3 IMP RGD PMID:20135641 RGD:4892623 NCBI chr10:89,509,917...89,564,679
Ensembl chr10:89,509,989...89,564,679 		JBrowse link
G Pdgfb platelet derived growth factor subunit B involved_in ISO
ISS
IEA		 (PMID:11788434), (PMID:16014047)
GO_REF:0000024
GO_REF:0000107		 RGD
UniProt
Ensembl		 PMID:11788434 PMID:16014047 GO_REF:0000024 GO_REF:0000107 NCBI chr 7:111,539,444...111,557,984
Ensembl chr 7:111,540,345...111,557,984 		JBrowse link
G Pdgfd platelet derived growth factor D IMP RGD PMID:12937299 RGD:9854637 NCBI chr 8:3,488,448...3,722,395
Ensembl chr 8:3,488,423...3,722,395 		JBrowse link
G Serpinb7 serpin family B member 7 IMP RGD PMID:21945418 RGD:7207383 NCBI chr13:23,369,830...23,442,205
Ensembl chr13:23,395,671...23,442,205 		JBrowse link
positive regulation of glomerular metanephric mesangial cell proliferation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Egr1 early growth response 1 involved_in IMP PMID:8910451 UniProt PMID:8910451 RGD:8553929 NCBI chr18:26,462,967...26,466,766
Ensembl chr18:26,462,981...26,466,766 		JBrowse link
positive regulation of tendon cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gdf7 growth differentiation factor 7 involved_in ISO (MGI:5294519|PMID:21412429) RGD PMID:21412429 MGI:5294519 NCBI chr 6:31,171,495...31,182,484
Ensembl chr 6:31,178,119...31,182,447 		JBrowse link
prostate gland stromal morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Crip1 cysteine rich protein 1 involved_in ISO (PMID:9507743) RGD PMID:9507743 NCBI chr 6:132,226,746...132,234,620
Ensembl chr 6:132,226,746...132,234,620 		JBrowse link
G Foxa1 forkhead box A1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:2384404 (PMID:15987773)		 Ensembl
RGD		 PMID:15987773 GO_REF:0000107 NCBI chr 6:75,099,907...75,136,534
Ensembl chr 6:75,103,503...75,136,188 		JBrowse link
G Id4 inhibitor of DNA binding 4 acts_upstream_of_or_within ISO MGI:3505549 (PMID:23786676) RGD PMID:23786676 NCBI chr17:16,389,387...16,391,956
Ensembl chr17:16,389,387...16,392,470 		JBrowse link
G Igf1 insulin-like growth factor 1 acts_upstream_of_or_within ISO MGI:1857466 (PMID:17138659) RGD PMID:17138659 NCBI chr 7:22,282,895...22,361,972
Ensembl chr 7:22,282,930...22,359,296 		JBrowse link
regulation of adipose tissue development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Plaat3 phospholipase A and acyltransferase 3 involved_in ISS
ISO		 GO_REF:0000024
(MGI:5825426|PMID:19136964)		 UniProt
RGD		 PMID:19136964 GO_REF:0000024 MGI:5825426 NCBI chr 1:204,782,608...204,816,397
Ensembl chr 1:204,782,729...204,817,667 		JBrowse link
regulation of cartilage development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp4 bone morphogenetic protein 4 acts_upstream_of_or_within ISO (PMID:20501701) RGD PMID:20501701 NCBI chr15:19,618,538...19,633,494
Ensembl chr15:19,618,542...19,623,306 		JBrowse link
G Kat2a lysine acetyltransferase 2A involved_in ISO (MGI:6377983|PMID:30424580) RGD PMID:30424580 MGI:6377983 NCBI chr10:85,632,216...85,640,561
Ensembl chr10:85,632,216...85,640,166 		JBrowse link
G Scx scleraxis bHLH transcription factor involved_in ISO (MGI:4413438|PMID:18802027) RGD PMID:18802027 MGI:4413438 NCBI chr 7:108,176,608...108,178,626
Ensembl chr 7:108,176,608...108,178,626 		JBrowse link
G Smpd3 sphingomyelin phosphodiesterase 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
(PMID:24505141)		 Ensembl
RGD		 PMID:24505141 GO_REF:0000107 NCBI chr19:34,162,337...34,245,786
Ensembl chr19:34,162,341...34,245,749 		JBrowse link
G Tgfb1 transforming growth factor, beta 1 acts_upstream_of_or_within ISO (PMID:20501701) RGD PMID:20501701 NCBI chr 1:81,196,532...81,212,848
Ensembl chr 1:81,196,532...81,212,847 		JBrowse link
regulation of chondrocyte development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Axin2 axin 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:3579503 (PMID:19623616)		 Ensembl
RGD		 PMID:19623616 GO_REF:0000107 NCBI chr10:93,893,830...93,927,042
Ensembl chr10:93,899,245...93,926,231 		JBrowse link
regulation of chondrocyte differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ccn2 cellular communication network factor 2 acts_upstream_of_or_within ISO MGI:2663631 (PMID:18597638) RGD PMID:18597638 NCBI chr 1:20,802,199...20,805,315
Ensembl chr 1:20,802,199...20,805,734 		JBrowse link
G Glg1 golgi glycoprotein 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:4829764 (PMID:20530870)		 Ensembl
RGD		 PMID:20530870 GO_REF:0000107 NCBI chr19:39,124,892...39,224,178
Ensembl chr19:39,124,641...39,224,178 		JBrowse link
G Hoxa11 homeobox A11 acts_upstream_of_or_within ISO MGI:96203 (PMID:22916278) RGD PMID:22916278 NCBI chr 4:81,342,527...81,346,189
Ensembl chr 4:81,342,528...81,346,232 		JBrowse link
G Hoxd11 homeobox D11 acts_upstream_of_or_within ISO MGI:96172 (PMID:22916278) RGD PMID:22916278 NCBI chr 3:59,584,840...59,587,257
Ensembl chr 3:59,585,039...59,586,783 		JBrowse link
G Lnpk lunapark, ER junction formation factor acts_upstream_of_or_within ISO (PMID:22916278) RGD PMID:22916278 NCBI chr 3:59,418,872...59,487,029
Ensembl chr 3:59,424,286...59,486,518 		JBrowse link
G Maf MAF bZIP transcription factor involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:2148636 (PMID:14512017)		 Ensembl
RGD		 PMID:14512017 GO_REF:0000107 NCBI chr19:43,353,867...43,713,162
Ensembl chr19:43,360,342...43,712,365 		JBrowse link
G Mboat2 membrane bound O-acyltransferase domain containing 2 involved_in ISS
ISO		 GO_REF:0000024
(MGI:6467698|PMID:29196633)		 UniProt
RGD		 PMID:29196633 GO_REF:0000024 MGI:6467698 NCBI chr 6:41,471,135...41,597,599
Ensembl chr 6:41,471,161...41,593,485 		JBrowse link
G Mdk midkine involved_in ISO
IEA
ISS		 (MGI:5693192|PMID:25551381)
GO_REF:0000107
GO_REF:0000024		 RGD
Ensembl
UniProt		 PMID:25551381 GO_REF:0000024 GO_REF:0000107 MGI:5693192 NCBI chr 3:77,901,134...77,903,997
Ensembl chr 3:77,901,158...77,903,130 		JBrowse link
G Pthlh parathyroid hormone-like hormone involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 4:180,188,792...180,199,847
Ensembl chr 4:180,188,792...180,199,847 		JBrowse link
G Shox2 SHOX homeobox 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:3628798 (PMID:16537395)		 Ensembl
RGD		 PMID:16537395 GO_REF:0000107 NCBI chr 2:151,217,049...151,227,180
Ensembl chr 2:151,217,552...151,227,143 		JBrowse link
G Six2 SIX homeobox 2 involved_in ISO (MGI:4822095|PMID:20515681) RGD PMID:20515681 MGI:4822095 NCBI chr 6:8,974,859...8,981,345
Ensembl chr 6:8,967,157...8,981,193 		JBrowse link
G Trps1 transcriptional repressor GATA binding 1 involved_in ISO (MGI:3848565|PMID:19389374) RGD PMID:19389374 MGI:3848565 NCBI chr 7:81,916,668...82,142,733
Ensembl chr 7:81,921,601...82,141,905 		JBrowse link
regulation of glomerular mesangial cell proliferation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pdgfa platelet derived growth factor subunit A NOT|involved_in ISS
ISO		 GO_REF:0000024
(PMID:11788434)		 UniProt
RGD		 PMID:11788434 GO_REF:0000024 NCBI chr12:15,645,549...15,667,056
Ensembl chr12:15,645,541...15,666,497 		JBrowse link
regulation of growth plate cartilage chondrocyte proliferation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Carm1 coactivator-associated arginine methyltransferase 1 acts_upstream_of_or_within ISO MGI:2663959 (PMID:19725955) RGD PMID:19725955 NCBI chr 8:20,097,262...20,141,950
Ensembl chr 8:20,097,254...20,147,689 		JBrowse link
G Por cytochrome p450 oxidoreductase IMP positive regulation RGD PMID:19264869 RGD:2316785 NCBI chr12:20,951,058...20,999,198
Ensembl chr12:20,951,058...20,999,245 		JBrowse link
tendon cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp4 bone morphogenetic protein 4 involved_in IEA
ISO
ISS		 GO_REF:0000107
(MGI:4418577|PMID:20059955)
GO_REF:0000024		 Ensembl
RGD
UniProt		 PMID:20059955 GO_REF:0000024 GO_REF:0000107 MGI:4418577 NCBI chr15:19,618,538...19,633,494
Ensembl chr15:19,618,542...19,623,306 		JBrowse link
G Mkx mohawk homeobox acts_upstream_of_or_within IMP
ISO		 MGI:5287572 (PMID:20696843) RGD PMID:20696843 PMID:27370800 RGD:40924660 NCBI chr17:55,077,073...55,156,877
Ensembl chr17:55,077,540...55,156,124 		JBrowse link
G Scx scleraxis bHLH transcription factor involved_in ISO (MGI:3715390|PMID:17567668), (MGI:4418577|PMID:20059955) RGD PMID:17567668 PMID:20059955 MGI:3715390 MGI:4418577 NCBI chr 7:108,176,608...108,178,626
Ensembl chr 7:108,176,608...108,178,626 		JBrowse link
G Tnmd tenomodulin involved_in IEP PMID:21412429 UniProt PMID:21412429 RGD:8553701 NCBI chr  X:97,057,137...97,072,634
Ensembl chr  X:97,057,137...97,072,634 		JBrowse link
tendon development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Col11a1 collagen type XI alpha 1 chain acts_upstream_of_or_within ISO MGI:1856399|MGI:88457 (PMID:21467034) RGD PMID:21467034 NCBI chr 2:201,820,715...202,013,853
Ensembl chr 2:201,820,715...202,013,853 		JBrowse link
G Col5a1 collagen type V alpha 1 chain involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:3664598|MGI:88446 (PMID:21467034)		 Ensembl
RGD		 PMID:21467034 GO_REF:0000107 NCBI chr 3:11,208,429...11,356,715
Ensembl chr 3:11,208,512...11,354,588 		JBrowse link
G Comp cartilage oligomeric matrix protein involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:3758741|MGI:5550566 (PMID:19808781), (PMID:24312420)		 Ensembl
RGD		 PMID:19808781 PMID:24312420 GO_REF:0000107 NCBI chr16:19,047,206...19,055,584
Ensembl chr16:19,047,207...19,055,845 		JBrowse link
G Scx scleraxis bHLH transcription factor involved_in ISO (MGI:3715390|PMID:17567668) RGD PMID:17567668 MGI:3715390 NCBI chr 7:108,176,608...108,178,626
Ensembl chr 7:108,176,608...108,178,626 		JBrowse link
tendon formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mkx mohawk homeobox acts_upstream_of_or_within ISO MGI:4461224|MGI:4887450|MGI:5287572 (PMID:20498044), (PMID:20696843), (PMID:21254332) RGD PMID:20498044 PMID:20696843 PMID:21254332 NCBI chr17:55,077,073...55,156,877
Ensembl chr17:55,077,540...55,156,124 		JBrowse link
G Scx scleraxis bHLH transcription factor involved_in ISO (MGI:2679803|PMID:14568104), (MGI:3715390|PMID:17567668) RGD PMID:14568104 PMID:17567668 MGI:2679803 MGI:3715390 NCBI chr 7:108,176,608...108,178,626
Ensembl chr 7:108,176,608...108,178,626 		JBrowse link
tendon sheath development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mkx mohawk homeobox acts_upstream_of_or_within ISO MGI:5287572 (PMID:20696843) RGD PMID:20696843 NCBI chr17:55,077,073...55,156,877
Ensembl chr17:55,077,540...55,156,124 		JBrowse link
trachea cartilage development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rara retinoic acid receptor, alpha acts_upstream_of_or_within ISO MGI:1857622 (PMID:9376317) RGD PMID:9376317 NCBI chr10:83,883,490...83,928,932
Ensembl chr10:83,893,384...83,928,142 		JBrowse link
G Rarg retinoic acid receptor, gamma acts_upstream_of_or_within ISO MGI:1931079 (PMID:8388780) RGD PMID:8388780 NCBI chr 7:133,367,833...133,390,301
Ensembl chr 7:133,367,833...133,390,177 		JBrowse link
G Sox9 SRY-box transcription factor 9 acts_upstream_of_or_within ISO MGI:2429649 (PMID:24218621) RGD PMID:24218621 NCBI chr10:97,806,485...97,811,994
Ensembl chr10:97,806,485...97,811,994 		JBrowse link
G Srf serum response factor acts_upstream_of_or_within ISO MGI:3522206 (PMID:24218621) RGD PMID:24218621 NCBI chr 9:14,426,453...14,435,734
Ensembl chr 9:14,426,472...14,435,733 		JBrowse link
trachea cartilage morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hoxa5 homeo box A5 acts_upstream_of_or_within ISO MGI:2150397 (PMID:9441679) RGD PMID:9441679 NCBI chr 4:81,302,341...81,306,234
Ensembl chr 4:81,302,353...81,306,234 		JBrowse link
G Lrp6 LDL receptor related protein 6 acts_upstream_of_or_within ISO MGI:1922667 (PMID:18256198) RGD PMID:18256198 NCBI chr 4:167,269,856...167,400,364
Ensembl chr 4:167,270,353...167,400,497 		JBrowse link
G Rspo2 R-spondin 2 acts_upstream_of_or_within ISO MGI:1298218 (PMID:18256198) RGD PMID:18256198 NCBI chr 7:74,096,378...74,239,398
Ensembl chr 7:74,103,090...74,238,933 		JBrowse link
G Wnt7b Wnt family member 7B acts_upstream_of_or_within ISO MGI:3793280 (PMID:18367557) RGD PMID:18367557 NCBI chr 7:116,634,817...116,679,459
Ensembl chr 7:116,634,814...116,679,581 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20413
    developmental process 7068
      anatomical structure development 6575
        tissue development 2306
          connective tissue development 344
            adipose tissue development + 77
            cardiac skeleton development + 0
            cartilage development + 237
            glomerular mesangium development + 23
            growth plate cartilage development + 28
            kidney stroma development 0
            lung connective tissue development 2
            prostate gland stromal morphogenesis 4
            renal capsule development + 1
            tendon development + 8
            tendon sheath development 1
paths to the root