ONTOLOGY REPORT - ANNOTATIONS
Term: heart trabecula morphogenesis
Accession: GO:0061384
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Definition: The process of shaping a trabecula in the heart. A trabecula is a small, often microscopic, tissue element in the form of a small beam, strut or rod, which generally has a mechanical function. Trabecula are usually but not necessarily, composed of dense collagenous tissue.
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Bmp5
bone morphogenetic protein 5
involved_in
ISO
UniProtKB:P23359 (MGI:1332253|PMID:10079236)
RGD
PMID:10079236
MGI:1332253
NCBI chr 8:76,517,164...76,639,925
Ensembl chr 8:76,517,164...76,639,925
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Bmp7
bone morphogenetic protein 7
involved_in
ISO
UniProtKB:P49003 (MGI:1332253|PMID:10079236)
RGD
PMID:10079236
MGI:1332253
NCBI chr 3:161,639,915...161,716,938
Ensembl chr 3:161,516,462...161,716,788
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Naca
nascent polypeptide associated complex subunit alpha
involved_in
ISO
(MGI:4867362|PMID:21071677)
RGD
PMID:21071677
MGI:4867362
NCBI chr 7:468,862...481,992
Ensembl chr 7:469,723...481,992
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Nfatc1
nuclear factor of activated T-cells 1
acts_upstream_of_or_within
ISO
MGI:2181766 (PMID:9515963)
RGD
PMID:9515963
NCBI chr18:74,046,422...74,156,041
Ensembl chr18:74,046,904...74,156,028
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Nog
noggin
involved_in
IEA ISO
GO_REF:0000107 (MGI:3783944|PMID:17218603)
Ensembl RGD
PMID:17218603
GO_REF:0000107 MGI:3783944
NCBI chr10:74,128,712...74,130,339
Ensembl chr10:74,128,712...74,130,339
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Notch1
notch receptor 1
involved_in
ISO
(MGI:4837019|PMID:20890042)
RGD
PMID:20890042
MGI:4837019
NCBI chr 3:9,277,955...9,323,531
Ensembl chr 3:9,278,086...9,323,531
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S1pr1
sphingosine-1-phosphate receptor 1
involved_in
ISS ISO
GO_REF:0000024 (MGI:5049789|PMID:21668976)
UniProt RGD
PMID:21668976
GO_REF:0000024 MGI:5049789
NCBI chr 2:203,624,752...203,629,110
Ensembl chr 2:203,621,587...203,629,681
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Sos1
SOS Ras/Rac guanine nucleotide exchange factor 1
acts_upstream_of_or_within
ISO
MGI:2155441 (PMID:9030684)
RGD
PMID:9030684
NCBI chr 6:14,533,870...14,613,348
Ensembl chr 6:14,533,360...14,611,107
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Tgfbr3
transforming growth factor beta receptor 3
involved_in
ISO
(MGI:2663364|PMID:12773577)
RGD
PMID:12773577
MGI:2663364
NCBI chr14:2,489,397...2,665,383
Ensembl chr14:2,489,397...2,663,341
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Adamts1
ADAM metallopeptidase with thrombospondin type 1 motif, 1
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:3609982 (PMID:18267097)
Ensembl RGD
PMID:18267097
GO_REF:0000107
NCBI chr11:24,932,227...24,941,068
Ensembl chr11:24,931,761...24,941,103
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Adgrg6
adhesion G protein-coupled receptor G6
involved_in
ISO IBA
(MGI:5516409|PMID:24082093) GO_REF:0000033
RGD GO_Central
PMID:24082093
GO_REF:0000033 MGI:5516409
NCBI chr 1:8,812,889...8,954,239
Ensembl chr 1:8,812,904...8,954,123
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Bmp10
bone morphogenetic protein 10
involved_in
IEA ISO
GO_REF:0000107 (MGI:3040529|PMID:15073151)
Ensembl RGD
PMID:15073151
GO_REF:0000107 MGI:3040529
NCBI chr 4:119,872,066...119,877,694
Ensembl chr 4:119,872,045...119,878,627
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Cav3
caveolin 3
acts_upstream_of_or_within
ISO
MGI:2684578 (PMID:19535499)
RGD
PMID:19535499
NCBI chr 4:145,582,168...145,598,142
Ensembl chr 4:145,582,060...145,598,137
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Egln1
egl-9 family hypoxia-inducible factor 1
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:3690045 (PMID:16966370)
Ensembl RGD
PMID:16966370
GO_REF:0000107
NCBI chr19:52,867,900...52,907,308
Ensembl chr19:52,869,486...52,907,777
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Fhl2
four and a half LIM domains 2
involved_in
ISO IEA
(MGI:3511603|PMID:15509787) GO_REF:0000107
RGD Ensembl
PMID:15509787
GO_REF:0000107 MGI:3511603
NCBI chr 9:45,388,979...45,462,421
Ensembl chr 9:45,388,981...45,431,192
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Fkbp1a
FKBP prolyl isomerase 1A
involved_in
ISO
(MGI:1195585|PMID:9461216)
RGD
PMID:9461216
MGI:1195585
NCBI chr 3:140,040,359...140,060,107
Ensembl chr 3:140,040,278...140,060,743
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Hey2
hes-related family bHLH transcription factor with YRPW motif 2
involved_in
ISO
(MGI:3703467|PMID:17259303)
RGD
PMID:17259303
MGI:3703467
NCBI chr 1:26,822,131...26,832,218
Ensembl chr 1:26,822,131...26,832,218
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Nkx2-5
NK2 homeobox 5
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 (PMID:16510504)
Ensembl RGD
PMID:16510504
GO_REF:0000107
NCBI chr10:16,340,428...16,347,004
Ensembl chr10:16,344,159...16,346,934
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Ovol2
ovo-like zinc finger 2
acts_upstream_of_or_within
ISO
MGI:3777011 (PMID:17573777)
RGD
PMID:17573777
NCBI chr 3:131,677,391...131,707,123
Ensembl chr 3:131,677,391...131,708,359
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Rbp4
retinol binding protein 4
involved_in
ISO
(MGI:2655947|PMID:12663486)
RGD
PMID:12663486
MGI:2655947
NCBI chr 1:235,893,917...235,901,315
Ensembl chr 1:235,893,917...235,901,399
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Smarca4
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4
acts_upstream_of_or_within
ISO
MGI:109249 (PMID:18267097)
RGD
PMID:18267097
NCBI chr 8:20,167,717...20,258,975
Ensembl chr 8:20,167,717...20,258,975
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Srf
serum response factor
acts_upstream_of_or_within
ISO
MGI:3522206|MGI:3522214 (PMID:15569937)
RGD
PMID:15569937
NCBI chr 9:14,426,453...14,435,734
Ensembl chr 9:14,426,472...14,435,733
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Tek
TEK receptor tyrosine kinase
involved_in
ISO
(MGI:68132|PMID:7958865)
RGD
PMID:7958865
MGI:68132
NCBI chr 5:109,607,077...109,733,805
Ensembl chr 5:109,607,077...109,733,804
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Tgfbr3
transforming growth factor beta receptor 3
involved_in
ISO
(MGI:2663364|PMID:12773577)
RGD
PMID:12773577
MGI:2663364
NCBI chr14:2,489,397...2,665,383
Ensembl chr14:2,489,397...2,663,341
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Bmpr1a
bone morphogenetic protein receptor type 1A
involved_in
ISO
(MGI:2175930|PMID:11854453), (MGI:3040576|PMID:15073157)
RGD
PMID:11854453 PMID:15073157
MGI:2175930 MGI:3040576
NCBI chr16:9,736,390...9,829,825
Ensembl chr16:9,736,630...9,780,616
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Ccm2l
CCM2 like scaffold protein
acts_upstream_of_or_within
ISO
MGI:1924696 (PMID:22898778)
RGD
PMID:22898778
NCBI chr 3:141,533,470...141,549,136
Ensembl chr 3:141,533,511...141,549,140
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Chd7
chromodomain helicase DNA binding protein 7
acts_upstream_of_or_within
ISO
MGI:2176467|MGI:4433295 (PMID:26102480)
RGD
PMID:26102480
NCBI chr 5:21,812,007...21,995,358
Ensembl chr 5:21,812,070...21,995,358
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Dll4
delta like canonical Notch ligand 4
involved_in
ISO IEA
(MGI:3056036|PMID:15466159) GO_REF:0000107
RGD Ensembl
PMID:15466159
GO_REF:0000107 MGI:3056036
NCBI chr 3:106,317,114...106,327,004
Ensembl chr 3:106,316,986...106,326,931
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Eng
endoglin
involved_in
ISO
(MGI:4368063|PMID:19703439)
RGD
PMID:19703439
MGI:4368063
NCBI chr 3:15,934,566...15,972,618
Ensembl chr 3:15,934,518...15,973,230
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Foxh1
forkhead box H1
involved_in
ISO
(MGI:3055632|PMID:15363409)
RGD
PMID:15363409
MGI:3055632
NCBI chr 7:108,387,969...108,391,566
Ensembl chr 7:108,387,969...108,390,049
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Heg1
heart development protein with EGF-like domains 1
acts_upstream_of_or_within
ISO
MGI:2385159 (PMID:22898778)
RGD
PMID:22898778
NCBI chr11:67,006,954...67,095,020
Ensembl chr11:66,957,190...67,095,051
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Hey1
hes-related family bHLH transcription factor with YRPW motif 1
acts_upstream_of_or_within
ISO
MGI:1341884 (PMID:15680351)
RGD
PMID:15680351
NCBI chr 2:93,096,605...93,100,316
Ensembl chr 2:93,095,498...93,100,312
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Hey2
hes-related family bHLH transcription factor with YRPW motif 2
acts_upstream_of_or_within
ISO
MGI:1341800 (PMID:15680351)
RGD
PMID:15680351
NCBI chr 1:26,822,131...26,832,218
Ensembl chr 1:26,822,131...26,832,218
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Med1
mediator complex subunit 1
involved_in
ISO
(MGI:2158098|PMID:11724781)
RGD
PMID:11724781
MGI:2158098
NCBI chr10:83,145,538...83,189,260
Ensembl chr10:83,145,568...83,189,299
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Nkx2-5
NK2 homeobox 5
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:3042511 (PMID:15109497)
Ensembl RGD
PMID:15109497
GO_REF:0000107
NCBI chr10:16,340,428...16,347,004
Ensembl chr10:16,344,159...16,346,934
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Notch1
notch receptor 1
involved_in
ISO
(MGI:3701380|PMID:17336907)
RGD
PMID:17336907
MGI:3701380
NCBI chr 3:9,277,955...9,323,531
Ensembl chr 3:9,278,086...9,323,531
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Nrg1
neuregulin 1
involved_in
ISO IEA
(PMID:17336907) GO_REF:0000107
RGD Ensembl
PMID:17336907
GO_REF:0000107
NCBI chr16:59,250,658...60,304,519
Ensembl chr16:59,250,854...60,296,884
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Rbpj
recombination signal binding protein for immunoglobulin kappa J region
involved_in
ISO
(MGI:3701380|PMID:17336907)
RGD
PMID:17336907
MGI:3701380
NCBI chr14:57,338,493...57,523,330
Ensembl chr14:57,338,507...57,523,353
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Tgfb2
transforming growth factor, beta 2
involved_in
ISO
(MGI:894212|PMID:9217007)
RGD
PMID:9217007
MGI:894212
NCBI chr13:98,160,075...98,261,771
Ensembl chr13:98,160,087...98,261,405
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Tgfbr1
transforming growth factor, beta receptor 1
involved_in
ISO IEA
(MGI:3820811|PMID:18718461) GO_REF:0000107
RGD Ensembl
PMID:18718461
GO_REF:0000107 MGI:3820811
NCBI chr 5:61,653,773...61,710,777
Ensembl chr 5:61,653,233...61,710,777
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Ube4b
ubiquitination factor E4B
acts_upstream_of_or_within
ISO
MGI:3611069 (PMID:16314518)
RGD
PMID:16314518
NCBI chr 5:159,766,829...159,870,509
Ensembl chr 5:159,766,829...159,870,509
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