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ONTOLOGY REPORT - ANNOTATIONS

Term:somite development
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Accession:GO:0061053 term browser browse the term
Definition:The progression of a somite from its initial formation to the mature structure. Somites are mesodermal clusters that are arranged segmentally along the anterior posterior axis of an embryo.


show annotations for term's descendants           Sort by:
somite development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Frzb frizzled-related protein involved_in ISO (MGI:1349347|PMID:10654605) RGD PMID:10654605 MGI:1349347 NCBI chr 3:65,332,274...65,365,208
Ensembl chr 3:65,332,277...65,365,208 		JBrowse link
G Ihh Indian hedgehog signaling molecule involved_in ISO (MGI:5142377|PMID:11517919) RGD PMID:11517919 MGI:5142377 NCBI chr 9:76,504,315...76,510,532
Ensembl chr 9:76,504,315...76,510,532 		JBrowse link
G Loxl3 lysyl oxidase-like 3 involved_in ISO (MGI:5825413|PMID:26954549) RGD PMID:26954549 MGI:5825413 NCBI chr 4:115,540,640...115,556,958
Ensembl chr 4:115,540,685...115,557,466 		JBrowse link
G Meox1 mesenchyme homeobox 1 involved_in ISO (MGI:4360150|PMID:19520072) RGD PMID:19520072 MGI:4360150 NCBI chr10:86,818,450...86,837,563
Ensembl chr10:86,818,478...86,837,660 		JBrowse link
G Mthfd1 methylenetetrahydrofolate dehydrogenase, cyclohydrolase and formyltetrahydrofolate synthetase 1 involved_in ISO (MGI:5503248|PMID:23704330) RGD PMID:23704330 MGI:5503248 NCBI chr 6:94,977,862...95,045,375
Ensembl chr 6:94,977,862...95,045,372 		JBrowse link
G Nog noggin involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:1862000 (MGI:3640733|PMID:16712836)		 Ensembl
RGD		 PMID:16712836 GO_REF:0000107 MGI:3640733 NCBI chr10:74,128,712...74,130,339
Ensembl chr10:74,128,712...74,130,339 		JBrowse link
G Nup133 nucleoporin 133 acts_upstream_of_or_within ISO MGI:3578539 (MGI:3798324|PMID:18539113) RGD PMID:18539113 MGI:3798324 NCBI chr19:51,891,606...51,941,243
Ensembl chr19:51,891,629...51,941,239 		JBrowse link
G Ptch1 patched 1 involved_in ISO (PMID:8681379)
(MGI:5142377|PMID:11517919)		 RGD PMID:8681379 PMID:11517919 MGI:5142377 NCBI chr17:1,542,705...1,607,730
Ensembl chr17:1,542,877...1,607,333 		JBrowse link
G Rad51b RAD51 paralog B acts_upstream_of_or_within ISO MGI:3621480 (MGI:1349263|PMID:10567591) RGD PMID:10567591 MGI:1349263 NCBI chr 6:98,096,525...98,640,988
Ensembl chr 6:98,098,868...98,640,979 		JBrowse link
G Rbbp6 RB binding protein 6, ubiquitin ligase acts_upstream_of_or_within ISO MGI:3711066 (MGI:3710702|PMID:17470788) RGD PMID:17470788 MGI:3710702 NCBI chr 1:177,503,988...177,537,397
Ensembl chr 1:177,503,313...177,535,678 		JBrowse link
G Shh sonic hedgehog signaling molecule involved_in IEA
ISO		 GO_REF:0000107
(MGI:5142377|PMID:11517919)		 Ensembl
RGD		 PMID:11517919 GO_REF:0000107 MGI:5142377 NCBI chr 4:6,954,017...6,963,170
Ensembl chr 4:6,954,017...6,963,170 		JBrowse link
G Smo smoothened, frizzled class receptor involved_in ISS
ISO
IEA		 GO_REF:0000024
(MGI:5142377|PMID:11517919)
GO_REF:0000107		 UniProt
RGD
Ensembl		 PMID:11517919 GO_REF:0000024 GO_REF:0000107 MGI:5142377 NCBI chr 4:58,344,101...58,372,828
Ensembl chr 4:58,343,529...58,373,829 		JBrowse link
G Wnt11 Wnt family member 11 acts_upstream_of_or_within ISO MGI:98958 (MGI:5634837|PMID:25813538) RGD PMID:25813538 MGI:5634837 NCBI chr 1:153,134,503...153,154,294
Ensembl chr 1:153,138,197...153,154,294 		JBrowse link
G Wnt5a Wnt family member 5A acts_upstream_of_or_within ISO MGI:101948 (MGI:5634837|PMID:25813538) RGD PMID:25813538 MGI:5634837 NCBI chr16:3,695,667...3,718,234
Ensembl chr16:3,697,032...3,718,234 		JBrowse link
axis elongation involved in somitogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lrp6 LDL receptor related protein 6 acts_upstream_of_or_within ISO MGI:98956 (MGI:1891551|PMID:11029008) RGD PMID:11029008 MGI:1891551 NCBI chr 4:167,266,581...167,400,155
Ensembl chr 4:167,270,353...167,400,497 		JBrowse link
G Med12 mediator complex subunit 12 acts_upstream_of_or_within ISO MGI:4839484 (MGI:4839483|PMID:20630950) RGD PMID:20630950 MGI:4839483 NCBI chr  X:66,404,622...66,427,772
Ensembl chr  X:66,404,760...66,428,387 		JBrowse link
G Wnt3a Wnt family member 3A acts_upstream_of_or_within ISO MGI:1298218 (MGI:1891551|PMID:11029008) RGD PMID:11029008 MGI:1891551 NCBI chr10:44,034,174...44,078,463
Ensembl chr10:44,034,194...44,078,324 		JBrowse link
convergent extension involved in somitogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sfrp1 secreted frizzled-related protein 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:108078|MGI:1860298 (MGI:3793375|PMID:18257070)		 Ensembl
RGD		 PMID:18257070 GO_REF:0000107 MGI:3793375 NCBI chr16:68,575,763...68,613,905
Ensembl chr16:68,575,763...68,614,286 		JBrowse link
myotome development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dmrt2 doublesex and mab-3 related transcription factor 2 acts_upstream_of ISO MGI:3512139 (MGI:3613100|PMID:16387292) RGD PMID:16387292 MGI:3613100 NCBI chr 1:223,317,543...223,324,131
Ensembl chr 1:223,317,642...223,324,131 		JBrowse link
G Six1 SIX homeobox 1 involved_in ISO (MGI:3578604|PMID:15788460), (MGI:4421263|PMID:19962975) RGD PMID:15788460 PMID:19962975 MGI:3578604 MGI:4421263 NCBI chr 6:91,746,739...91,751,975
Ensembl chr 6:91,746,739...91,751,975 		JBrowse link
G Six4 SIX homeobox 4 involved_in ISO (MGI:3578604|PMID:15788460), (MGI:4421263|PMID:19962975) RGD PMID:15788460 PMID:19962975 MGI:3578604 MGI:4421263 NCBI chr 6:91,802,328...91,816,062
Ensembl chr 6:91,802,329...91,815,992 		JBrowse link
G Wdr19 WD repeat domain 19 acts_upstream_of_or_within ISO MGI:5315747 (MGI:5314316|PMID:22228095) RGD PMID:22228095 MGI:5314316 NCBI chr14:43,042,474...43,106,337
Ensembl chr14:43,042,478...43,106,288 		JBrowse link
negative regulation of dermatome development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sfrp2 secreted frizzled-related protein 2 involved_in ISO (MGI:1349347|PMID:10654605) RGD PMID:10654605 MGI:1349347 NCBI chr 2:169,089,517...169,097,064
Ensembl chr 2:169,089,517...169,097,063 		JBrowse link
negative regulation of Notch signaling pathway involved in somitogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lfng LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase involved_in ISS
ISO		 GO_REF:0000024
(MGI:5545944|PMID:23072809)		 UniProt
RGD		 PMID:23072809 GO_REF:0000024 MGI:5545944 NCBI chr12:14,030,551...14,038,996
Ensembl chr12:14,018,333...14,039,008 		JBrowse link
G Nrarp Notch-regulated ankyrin repeat protein acts_upstream_of_or_within ISO MGI:5317888 (MGI:5317364|PMID:21795391) RGD PMID:21795391 MGI:5317364 NCBI chr 3:7,992,582...7,995,136
Ensembl chr 3:7,992,552...7,995,133 		JBrowse link
positive regulation of dermatome development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Wnt1 Wnt family member 1 involved_in ISO (PMID:10654605) RGD PMID:10654605 NCBI chr 7:129,938,604...129,942,651
Ensembl chr 7:129,938,604...129,942,651 		JBrowse link
G Wnt3a Wnt family member 3A involved_in ISO (PMID:10654605) RGD PMID:10654605 NCBI chr10:44,034,174...44,078,463
Ensembl chr10:44,034,194...44,078,324 		JBrowse link
G Wnt4 Wnt family member 4 involved_in ISO
IEA		 (PMID:10654605)
GO_REF:0000107		 RGD
Ensembl		 PMID:10654605 GO_REF:0000107 NCBI chr 5:149,513,573...149,535,415
Ensembl chr 5:149,514,018...149,532,859 		JBrowse link
positive regulation of myotome development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dmrt2 doublesex and mab-3 related transcription factor 2 acts_upstream_of_or_within ISO MGI:3512139 (MGI:3613100|PMID:16387292) RGD PMID:16387292 MGI:3613100 NCBI chr 1:223,317,543...223,324,131
Ensembl chr 1:223,317,642...223,324,131 		JBrowse link
positive regulation of sclerotome development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Shh sonic hedgehog signaling molecule involved_in IEA
ISO		 GO_REF:0000107
(PMID:10654605)		 Ensembl
RGD		 PMID:10654605 GO_REF:0000107 NCBI chr 4:6,954,017...6,963,170
Ensembl chr 4:6,954,017...6,963,170 		JBrowse link
regulation of cell migration involved in somitogenic axis elongation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ppp2r3a protein phosphatase 2, regulatory subunit B'', alpha involved_in ISO UniProtKB:A0A803JG39 (PMID:15687260) RGD PMID:15687260 NCBI chr 8:101,703,512...101,841,530
Ensembl chr 8:101,704,778...101,841,502 		JBrowse link
regulation of somitogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdx1 caudal type homeo box 1 involved_in IEA
ISO
ISS		 GO_REF:0000107
(MGI:5301472|PMID:22015720)
GO_REF:0000024		 Ensembl
RGD
UniProt		 PMID:22015720 GO_REF:0000024 GO_REF:0000107 MGI:5301472 NCBI chr18:54,472,448...54,499,799
Ensembl chr18:54,473,444...54,490,814 		JBrowse link
G Cdx2 caudal type homeo box 2 involved_in ISO (MGI:5301472|PMID:22015720) RGD PMID:22015720 MGI:5301472 NCBI chr12:7,726,798...7,733,142
Ensembl chr12:7,726,798...7,733,142 		JBrowse link
G Dll1 delta like canonical Notch ligand 1 involved_in ISS
ISO
IEA		 GO_REF:0000024
(MGI:5689216|PMID:26114479)
GO_REF:0000107		 UniProt
RGD
Ensembl		 PMID:26114479 GO_REF:0000024 GO_REF:0000107 MGI:5689216 NCBI chr 1:56,312,062...56,320,177
Ensembl chr 1:56,312,066...56,320,179 		JBrowse link
G Dmrt2 doublesex and mab-3 related transcription factor 2 acts_upstream_of_or_within ISO MGI:3512139|MGI:97487 (MGI:3820487|PMID:17974128) RGD PMID:17974128 MGI:3820487 NCBI chr 1:223,317,543...223,324,131
Ensembl chr 1:223,317,642...223,324,131 		JBrowse link
G Lfng LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase involved_in
acts_upstream_of_or_within		 ISO (PMID:19061953)
MGI:1933734 (MGI:4367298|PMID:19779553)		 RGD PMID:19061953 PMID:19779553 MGI:4367298 NCBI chr12:14,030,551...14,038,996
Ensembl chr12:14,018,333...14,039,008 		JBrowse link
G Notch1 notch receptor 1 acts_upstream_of_or_within ISO MGI:1857230 (MGI:72973|PMID:7789282) RGD PMID:7789282 MGI:72973 NCBI chr 3:9,277,955...9,323,531
Ensembl chr 3:9,278,086...9,323,531 		JBrowse link
G Pax3 paired box 3 acts_upstream_of_or_within ISO MGI:1330307|MGI:1856173 (MGI:3820487|PMID:17974128) RGD PMID:17974128 MGI:3820487 NCBI chr 9:79,567,455...79,664,042
Ensembl chr 9:79,568,634...79,664,042 		JBrowse link
retinoic acid receptor signaling pathway involved in somitogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh1a2 aldehyde dehydrogenase 1 family, member A2 acts_upstream_of_or_within ISO MGI:1100864|MGI:1857891 (MGI:3578715|PMID:15889094) RGD PMID:15889094 MGI:3578715 NCBI chr 8:71,877,850...71,957,107
Ensembl chr 8:71,877,850...71,957,107 		JBrowse link
sclerotome development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Meox1 mesenchyme homeobox 1 involved_in ISO (MGI:3038036|PMID:15024065), (MGI:4360150|PMID:19520072) RGD PMID:15024065 PMID:19520072 MGI:3038036 MGI:4360150 NCBI chr10:86,818,450...86,837,563
Ensembl chr10:86,818,478...86,837,660 		JBrowse link
G Pax1 paired box 1 involved_in ISO (MGI:72077|PMID:7743923) RGD PMID:7743923 MGI:72077 NCBI chr 3:134,789,291...134,801,636
Ensembl chr 3:134,789,182...134,801,636 		JBrowse link
G Scx scleraxis bHLH transcription factor involved_in ISO (MGI:72077|PMID:7743923) RGD PMID:7743923 MGI:72077 NCBI chr 7:108,176,608...108,178,626
Ensembl chr 7:108,176,608...108,178,626 		JBrowse link
G Sfrp2 secreted frizzled-related protein 2 involved_in ISO (MGI:1349347|PMID:10654605) RGD PMID:10654605 MGI:1349347 NCBI chr 2:169,089,517...169,097,064
Ensembl chr 2:169,089,517...169,097,063 		JBrowse link
somite rostral/caudal axis specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Epb41l5 erythrocyte membrane protein band 4.1 like 5 acts_upstream_of_or_within ISO MGI:3822451 (MGI:3821807|PMID:18794329) RGD PMID:18794329 MGI:3821807 NCBI chr13:30,673,052...30,770,213
Ensembl chr13:30,669,764...30,768,360 		JBrowse link
G Foxa2 forkhead box A2 acts_upstream_of_or_within ISO MGI:1857725 (MGI:2157654|PMID:11291865) RGD PMID:11291865 MGI:2157654 NCBI chr 3:135,470,123...135,474,326
Ensembl chr 3:135,470,131...135,474,326 		JBrowse link
G Gdf3 growth differentiation factor 3 acts_upstream_of_or_within ISO MGI:3612535 (MGI:3611720|PMID:16368929) RGD PMID:16368929 MGI:3611720 NCBI chr 4:155,831,572...155,835,953
Ensembl chr 4:155,830,909...155,835,937 		JBrowse link
G Kdm6a lysine demethylase 6A acts_upstream_of_or_within ISO MGI:5448825 (MGI:5448135|PMID:22949634) RGD PMID:22949634 MGI:5448135 NCBI chr  X:4,337,466...4,477,100
Ensembl chr  X:4,337,750...4,477,062 		JBrowse link
G Lhx1 LIM homeobox 1 acts_upstream_of_or_within ISO MGI:1857502|MGI:1857848 (MGI:2157654|PMID:11291865) RGD PMID:11291865 MGI:2157654 NCBI chr10:69,396,829...69,403,617
Ensembl chr10:69,396,829...69,403,617 		JBrowse link
G Mesp1 mesoderm posterior bHLH transcription factor 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:133,738,357...133,739,875
Ensembl chr 1:133,738,357...133,739,875 		JBrowse link
G Mesp2 mesoderm posterior bHLH transcription factor 2 involved_in
acts_upstream_of_or_within		 IBA
ISO		 PMID:21873635
MGI:3580268 (MGI:4459001|PMID:20346937)		 RGD PMID:20346937 PMID:21873635 MGI:4459001, RGD:13792537 NCBI chr 1:133,756,601...133,759,207
Ensembl chr 1:133,756,601...133,759,198 		JBrowse link
G Nrarp Notch-regulated ankyrin repeat protein acts_upstream_of_or_within ISO MGI:5438570 (MGI:5438472|PMID:21998026) RGD PMID:21998026 MGI:5438472 NCBI chr 3:7,992,582...7,995,136
Ensembl chr 3:7,992,552...7,995,133 		JBrowse link
G Otx2 orthodenticle homeobox 2 acts_upstream_of_or_within ISO MGI:1857502 (MGI:2157654|PMID:11291865) RGD PMID:11291865 MGI:2157654 NCBI chr15:21,942,233...21,953,034
Ensembl chr15:21,943,191...21,953,416 		JBrowse link
G Ripply1 ripply transcriptional repressor 1 acts_upstream_of_or_within ISO MGI:2685968 (MGI:4459001|PMID:20346937) RGD PMID:20346937 MGI:4459001 NCBI chr  X:103,436,731...103,440,904
Ensembl chr  X:103,436,729...103,443,349 		JBrowse link
G Ripply2 ripply transcriptional repressor 2 acts_upstream_of_or_within
involved_in		 ISO MGI:3614797 (MGI:4459001|PMID:20346937)
(MGI:3613215|PMID:16326386)		 RGD PMID:16326386 PMID:20346937 MGI:3613215 MGI:4459001 NCBI chr 8:87,974,444...87,978,996
Ensembl chr 8:87,974,776...87,978,969 		JBrowse link
G Smad4 SMAD family member 4 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:1858049 (MGI:1195384|PMID:9420335)		 Ensembl
RGD		 PMID:9420335 GO_REF:0000107 MGI:1195384 NCBI chr18:67,243,742...67,274,438
Ensembl chr18:67,243,742...67,274,438 		JBrowse link
G Tbx6 T-box transcription factor 6 acts_upstream_of_or_within ISO (MGI:4459001|PMID:20346937) RGD PMID:20346937 MGI:4459001 NCBI chr 1:181,387,851...181,392,762
Ensembl chr 1:181,388,684...181,392,593 		JBrowse link
G Tmed2 transmembrane p24 trafficking protein 2 acts_upstream_of_or_within ISO MGI:4456438 (MGI:4453264|PMID:20178780) RGD PMID:20178780 MGI:4453264 NCBI chr12:32,052,542...32,061,596
Ensembl chr12:32,052,543...32,071,903 		JBrowse link
somite specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cobl cordon-bleu WH2 repeat protein involved_in ISO (MGI:76306|PMID:7586755) RGD PMID:7586755 MGI:76306 NCBI chr14:86,828,137...87,060,682
Ensembl chr14:86,828,139...87,060,800 		JBrowse link
G Dll1 delta like canonical Notch ligand 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:3038950 (MGI:3034157|PMID:14960495)		 Ensembl
RGD		 PMID:14960495 GO_REF:0000107 MGI:3034157 NCBI chr 1:56,312,062...56,320,177
Ensembl chr 1:56,312,066...56,320,179 		JBrowse link
G Meox1 mesenchyme homeobox 1 acts_upstream_of_or_within ISO MGI:103219 (MGI:2669571|PMID:12925591) RGD PMID:12925591 MGI:2669571 NCBI chr10:86,818,450...86,837,563
Ensembl chr10:86,818,478...86,837,660 		JBrowse link
G Meox2 mesenchyme homeobox 2 acts_upstream_of_or_within
involved_in		 ISO
IEA		 MGI:103220 (MGI:2669571|PMID:12925591)
GO_REF:0000107		 RGD
Ensembl		 PMID:12925591 GO_REF:0000107 MGI:2669571 NCBI chr 6:53,856,760...53,917,467
Ensembl chr 6:53,856,758...53,917,467 		JBrowse link
somitogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abi1 abl-interactor 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:3578145 (MGI:3577662|PMID:15755804)		 Ensembl
RGD		 PMID:15755804 GO_REF:0000107 MGI:3577662 NCBI chr17:85,098,837...85,179,829
Ensembl chr17:85,098,550...85,179,792 		JBrowse link
G Atm ATM serine/threonine kinase acts_upstream_of_or_within ISO MGI:104779 (MGI:3624894|PMID:16687486) RGD PMID:16687486 MGI:3624894 NCBI chr 8:53,828,741...53,932,773
Ensembl chr 8:53,831,093...53,932,437 		JBrowse link
G Axin2 axin 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
(MGI:3037351|PMID:12636920)		 Ensembl
RGD		 PMID:12636920 GO_REF:0000107 MGI:3037351 NCBI chr10:93,893,830...93,927,042
Ensembl chr10:93,899,245...93,926,231 		JBrowse link
G Bmpr1a bone morphogenetic protein receptor type 1A acts_upstream_of_or_within ISO MGI:2158343 (MGI:3702797|PMID:16943278) RGD PMID:16943278 MGI:3702797 NCBI chr16:9,736,390...9,829,825
Ensembl chr16:9,736,630...9,780,616 		JBrowse link
G Crb2 crumbs cell polarity complex component 2 involved_in ISS
ISO		 GO_REF:0000024
(MGI:5296388|PMID:22072575)		 CAFA
RGD		 PMID:22072575 GO_REF:0000024 MGI:5296388 NCBI chr 3:21,542,138...21,564,876
Ensembl chr 3:21,542,221...21,563,294 		JBrowse link
G Dll1 delta like canonical Notch ligand 1 involved_in
acts_upstream_of_or_within		 ISS
ISO		 GO_REF:0000024
MGI:1096325 (MGI:3578712|PMID:15902259)
(MGI:5545944|PMID:23072809)		 UniProt
RGD		 PMID:15902259 PMID:23072809 GO_REF:0000024 MGI:3578712 MGI:5545944 NCBI chr 1:56,312,062...56,320,177
Ensembl chr 1:56,312,066...56,320,179 		JBrowse link
G Dll3 delta like canonical Notch ligand 3 acts_upstream_of_or_within
involved_in		 ISO
IEA		 MGI:1857008 (MGI:1095777|PMID:9272948), (MGI:3620337|PMID:15170697)
GO_REF:0000107		 RGD
Ensembl		 PMID:9272948 PMID:15170697 GO_REF:0000107 MGI:1095777 MGI:3620337 NCBI chr 1:83,562,011...83,570,008
Ensembl chr 1:83,562,014...83,569,750 		JBrowse link
G Ep300 E1A binding protein p300 acts_upstream_of_or_within ISO MGI:1343101 (MGI:3583034|PMID:15937931) RGD PMID:15937931 MGI:3583034 NCBI chr 7:113,108,476...113,178,529
Ensembl chr 7:113,106,247...113,136,088
Ensembl chr 7:113,106,247...113,136,088 		JBrowse link
G Epb41l5 erythrocyte membrane protein band 4.1 like 5 acts_upstream_of_or_within ISO MGI:3822451 (MGI:3821807|PMID:18794329) RGD PMID:18794329 MGI:3821807 NCBI chr13:30,673,052...30,770,213
Ensembl chr13:30,669,764...30,768,360 		JBrowse link
G Foxb1 forkhead box B1 involved_in ISO (MGI:3771770|PMID:18064677) RGD PMID:18064677 MGI:3771770 NCBI chr 8:70,407,221...70,409,841
Ensembl chr 8:70,408,186...70,409,781 		JBrowse link
G Foxc1 forkhead box C1 involved_in ISO UniProtKB:Q61850 (MGI:2150572|PMID:11562355) RGD PMID:11562355 MGI:2150572 NCBI chr17:32,631,379...32,635,361
Ensembl chr17:32,633,142...32,634,803 		JBrowse link
G Foxc2 forkhead box C2 involved_in ISO UniProtKB:Q61572 (MGI:2150572|PMID:11562355) RGD PMID:11562355 MGI:2150572 NCBI chr19:49,186,034...49,188,736
Ensembl chr19:49,185,662...49,188,737 		JBrowse link
G Foxf1 forkhead box F1 acts_upstream_of_or_within ISO MGI:1929432 (MGI:1928688|PMID:11124112) RGD PMID:11124112 MGI:1928688 NCBI chr19:49,153,729...49,157,741
Ensembl chr19:49,153,699...49,157,738 		JBrowse link
G Hes7 hes family bHLH transcription factor 7 acts_upstream_of_or_within ISO MGI:2652222|MGI:3046536 (MGI:2152470|PMID:11641270), (MGI:3046002|PMID:15170214), (MGI:4367298|PMID:19779553) RGD PMID:11641270 PMID:15170214 PMID:19779553 MGI:2152470 MGI:3046002 MGI:4367298 NCBI chr10:53,824,124...53,828,350
Ensembl chr10:53,825,574...53,828,097 		JBrowse link
G Ifitm1 interferon induced transmembrane protein 1 acts_upstream_of_or_within ISO (MGI:3578569|PMID:15857914) RGD PMID:15857914 MGI:3578569 NCBI chr 1:196,067,163...196,069,169
Ensembl chr 1:196,067,963...196,069,169 		JBrowse link
G Kat2a lysine acetyltransferase 2A acts_upstream_of_or_within ISO MGI:1276116|MGI:3711317 (MGI:3583034|PMID:15937931), (MGI:3709911|PMID:17325035) RGD PMID:15937931 PMID:17325035 MGI:3583034 MGI:3709911 NCBI chr10:85,632,216...85,640,561
Ensembl chr10:85,632,216...85,640,166 		JBrowse link
G Lef1 lymphoid enhancer binding factor 1 acts_upstream_of_or_within ISO MGI:1933764|MGI:98504 (MGI:1334099|PMID:10090727), (MGI:3510574|PMID:15545629) RGD PMID:10090727 PMID:15545629 MGI:1334099 MGI:3510574 NCBI chr 2:219,666,549...219,779,815
Ensembl chr 2:219,666,592...219,779,794 		JBrowse link
G Lfng LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase involved_in
acts_upstream_of_or_within		 ISS
ISO		 GO_REF:0000024
(MGI:5545944|PMID:23072809)
MGI:3775061 (MGI:3774705|PMID:18234727)		 UniProt
RGD		 PMID:18234727 PMID:23072809 GO_REF:0000024 MGI:3774705 MGI:5545944 NCBI chr12:14,030,551...14,038,996
Ensembl chr12:14,018,333...14,039,008 		JBrowse link
G Lrp6 LDL receptor related protein 6 acts_upstream_of_or_within ISO MGI:98958 (MGI:4413372|PMID:19795512) RGD PMID:19795512 MGI:4413372 NCBI chr 4:167,266,581...167,400,155
Ensembl chr 4:167,270,353...167,400,497 		JBrowse link
G Med12 mediator complex subunit 12 acts_upstream_of_or_within ISO MGI:4839486 (MGI:4839544|PMID:20589884) RGD PMID:20589884 MGI:4839544 NCBI chr  X:66,404,622...66,427,772
Ensembl chr  X:66,404,760...66,428,387 		JBrowse link
G Mesp2 mesoderm posterior bHLH transcription factor 2 acts_upstream_of_or_within ISO MGI:104659|MGI:3580268 (MGI:3578712|PMID:15902259) RGD PMID:15902259 MGI:3578712 NCBI chr 1:133,756,601...133,759,207
Ensembl chr 1:133,756,601...133,759,198 		JBrowse link
G Mib1 MIB E3 ubiquitin protein ligase 1 acts_upstream_of_or_within ISO MGI:3603514 (MGI:3603078|PMID:16000382) RGD PMID:16000382 MGI:3603078 NCBI chr18:1,802,519...1,926,988
Ensembl chr18:1,802,519...1,920,689 		JBrowse link
G Msgn1 mesogenin 1 acts_upstream_of_or_within ISO MGI:1933263 (MGI:1928575|PMID:11124811), (MGI:5545970|PMID:21750544) RGD PMID:11124811 PMID:21750544 MGI:1928575 MGI:5545970 NCBI chr 6:33,912,787...33,913,427
Ensembl chr 6:33,912,787...33,913,427 		JBrowse link
G Myf5 myogenic factor 5 acts_upstream_of_or_within ISO MGI:1857219|MGI:1857973|MGI:2449231 (MGI:1861090|PMID:10929709), (MGI:3849775|PMID:19531352), (MGI:78390|PMID:8565825) RGD PMID:8565825 PMID:10929709 PMID:19531352 MGI:1861090 MGI:3849775 MGI:78390 NCBI chr 7:42,802,946...42,806,177
Ensembl chr 7:42,802,946...42,806,177 		JBrowse link
G Myf6 myogenic factor 6 acts_upstream_of_or_within ISO MGI:1857220 (MGI:76810|PMID:7588068) RGD PMID:7588068 MGI:76810 NCBI chr 7:42,813,008...42,814,852
Ensembl chr 7:42,812,792...42,814,852 		JBrowse link
G Nckap1 NCK-associated protein 1 acts_upstream_of_or_within ISO MGI:3578145 (MGI:3701029|PMID:16831833) RGD PMID:16831833 MGI:3701029 NCBI chr 3:65,417,450...65,491,769
Ensembl chr 3:65,417,453...65,492,217 		JBrowse link
G Nkx3-1 NK3 homeobox 1 involved_in ISO (MGI:1267297|PMID:9621431) RGD PMID:9621431 MGI:1267297 NCBI chr15:44,473,851...44,476,443
Ensembl chr15:44,473,851...44,476,441 		JBrowse link
G Nle1 notchless homolog 1 acts_upstream_of_or_within ISO MGI:2176174|MGI:5553357 (MGI:5608942|PMID:24875805) RGD PMID:24875805 MGI:5608942 NCBI chr10:67,834,059...67,844,771
Ensembl chr10:67,834,062...67,842,658 		JBrowse link
G Palb2 partner and localizer of BRCA2 acts_upstream_of_or_within ISO MGI:3801303 (MGI:4459579|PMID:20484223) RGD PMID:20484223 MGI:4459579 NCBI chr 1:176,665,076...176,689,053
Ensembl chr 1:176,665,076...176,688,990 		JBrowse link
G Pax1 paired box 1 acts_upstream_of_or_within ISO MGI:3603176 (MGI:3590033|PMID:16093716) RGD PMID:16093716 MGI:3590033 NCBI chr 3:134,789,291...134,801,636
Ensembl chr 3:134,789,182...134,801,636 		JBrowse link
G Pcdh8 protocadherin 8 acts_upstream_of_or_within ISO (MGI:2451199|PMID:12591245) RGD PMID:12591245 MGI:2451199 NCBI chr15:55,198,475...55,203,021
Ensembl chr15:55,198,459...55,205,872 		JBrowse link
G Plxna2 plexin A2 involved_in ISO (MGI:4355631|PMID:19666519) RGD PMID:19666519 MGI:4355631 NCBI chr13:106,163,103...106,358,979
Ensembl chr13:106,163,103...106,358,979 		JBrowse link
G Pofut1 protein O-fucosyltransferase 1 acts_upstream_of_or_within ISO MGI:2662305 (MGI:2660984|PMID:12697902) RGD PMID:12697902 MGI:2660984 NCBI chr 3:141,708,618...141,735,558
Ensembl chr 3:141,708,644...141,734,786 		JBrowse link
G Poglut1 protein O-glucosyltransferase 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:2137554 (MGI:1267118|PMID:9636176)		 Ensembl
RGD		 PMID:9636176 GO_REF:0000107 MGI:1267118 NCBI chr11:62,198,600...62,226,446
Ensembl chr11:62,198,513...62,226,434 		JBrowse link
G Prkdc protein kinase, DNA-activated, catalytic subunit acts_upstream_of_or_within ISO MGI:107202 (MGI:3624894|PMID:16687486) RGD PMID:16687486 MGI:3624894 NCBI chr11:85,040,790...85,258,357
Ensembl chr11:85,040,792...85,257,952 		JBrowse link
G Psen1 presenilin 1 acts_upstream_of_or_within ISO MGI:109284|MGI:1930934 (MGI:1347695|PMID:10557208), (MGI:4367298|PMID:19779553), (MGI:87649|PMID:9153393) RGD PMID:9153393 PMID:10557208 PMID:19779553 MGI:1347695 MGI:4367298 MGI:87649 NCBI chr 6:103,323,014...103,375,088
Ensembl chr 6:103,323,120...103,371,650 		JBrowse link
G Psen2 presenilin 2 acts_upstream_of_or_within ISO MGI:1202717 (MGI:1347695|PMID:10557208), (MGI:4367298|PMID:19779553) RGD PMID:10557208 PMID:19779553 MGI:1347695 MGI:4367298 NCBI chr13:91,967,506...91,993,240
Ensembl chr13:91,967,983...91,993,174 		JBrowse link
G Rbpj recombination signal binding protein for immunoglobulin kappa J region acts_upstream_of_or_within ISO MGI:1857411 (MGI:4367298|PMID:19779553) RGD PMID:19779553 MGI:4367298 NCBI chr14:57,338,493...57,523,330
Ensembl chr14:57,338,507...57,523,353 		JBrowse link
G Ripply2 ripply transcriptional repressor 2 acts_upstream_of_or_within
involved_in		 ISO MGI:3513254 (MGI:3715395|PMID:17531978)
(MGI:3613215|PMID:16326386)		 RGD PMID:16326386 PMID:17531978 MGI:3613215 MGI:3715395 NCBI chr 8:87,974,444...87,978,996
Ensembl chr 8:87,974,776...87,978,969 		JBrowse link
G Ror2 receptor tyrosine kinase-like orphan receptor 2 acts_upstream_of_or_within ISO MGI:2183225 (MGI:3037488|PMID:14745966) RGD PMID:14745966 MGI:3037488 NCBI chr17:11,972,830...12,148,152
Ensembl chr17:11,972,830...12,148,152 		JBrowse link
G Sema3c semaphorin 3C involved_in ISO (MGI:4355631|PMID:19666519) RGD PMID:19666519 MGI:4355631 NCBI chr 4:17,583,212...17,747,234
Ensembl chr 4:17,583,212...17,746,534 		JBrowse link
G Sfrp1 secreted frizzled-related protein 1 acts_upstream_of_or_within
involved_in		 ISO MGI:108078 (MGI:3618960|PMID:16467359)
(MGI:1349347|PMID:10654605)		 RGD PMID:10654605 PMID:16467359 MGI:1349347 MGI:3618960 NCBI chr16:68,575,763...68,613,905
Ensembl chr16:68,575,763...68,614,286 		JBrowse link
G Sfrp2 secreted frizzled-related protein 2 acts_upstream_of_or_within ISO MGI:892014 (MGI:3618960|PMID:16467359) RGD PMID:16467359 MGI:3618960 NCBI chr 2:169,089,517...169,097,064
Ensembl chr 2:169,089,517...169,097,063 		JBrowse link
G Smad3 SMAD family member 3 acts_upstream_of_or_within ISO MGI:108051 (MGI:3618021|PMID:15183723) RGD PMID:15183723 MGI:3618021 NCBI chr 8:64,126,829...64,236,960
Ensembl chr 8:64,110,039...64,236,960 		JBrowse link
G Taf10 TATA-box binding protein associated factor 10 involved_in ISO MGI:3606185 (MGI:5918349|PMID:28893950) RGD PMID:28893950 MGI:5918349 NCBI chr 1:160,095,108...160,096,401
Ensembl chr 1:160,095,108...160,096,376 		JBrowse link
G Tbx18 T-box transcription factor 18 involved_in
acts_upstream_of_or_within		 IBA
ISO		 PMID:21873635
MGI:3044914 (MGI:3044041|PMID:15155583)		 RGD PMID:15155583 PMID:21873635 MGI:3044041, RGD:13792537 NCBI chr 8:88,652,054...88,680,081
Ensembl chr 8:88,652,054...88,680,058 		JBrowse link
G Tbxt T-box transcription factor T acts_upstream_of_or_within
involved_in		 ISO
IBA		 MGI:1856158|MGI:1857760|MGI:3042264 (MGI:3056222|PMID:15384171), (MGI:3701028|PMID:16835439), (MGI:64493|PMID:8293872)
PMID:21873635		 RGD PMID:8293872 PMID:15384171 PMID:16835439 PMID:21873635 MGI:3056222 MGI:3701028 MGI:64493, RGD:13792537 NCBI chr 1:52,298,099...52,309,813
Ensembl chr 1:52,298,099...52,305,864 		JBrowse link
G Tcap titin-cap involved_in ISO (MGI:1314551|PMID:9817758) RGD PMID:9817758 MGI:1314551 NCBI chr10:83,381,719...83,382,887
Ensembl chr10:83,381,719...83,382,887 		JBrowse link
G Tcf15 transcription factor 15 acts_upstream_of_or_within ISO MGI:1929775 (MGI:84545|PMID:8955271) RGD PMID:8955271 MGI:84545 NCBI chr 3:140,638,984...140,644,766
Ensembl chr 3:140,638,984...140,644,766 		JBrowse link
G Tmed2 transmembrane p24 trafficking protein 2 acts_upstream_of_or_within ISO MGI:4456438 (MGI:4453264|PMID:20178780) RGD PMID:20178780 MGI:4453264 NCBI chr12:32,052,542...32,061,596
Ensembl chr12:32,052,543...32,071,903 		JBrowse link
G Tp53 tumor protein p53 acts_upstream_of_or_within ISO MGI:1343101 (MGI:3709913|PMID:17320900) RGD PMID:17320900 MGI:3709913 NCBI chr10:54,300,070...54,311,525
Ensembl chr10:54,300,048...54,311,524 		JBrowse link
G Ttn titin involved_in ISO (MGI:1314551|PMID:9817758) RGD PMID:9817758 MGI:1314551 NCBI chr 3:61,652,432...61,924,912
Ensembl chr 3:61,652,439...61,924,741 		JBrowse link
G Wnt3a Wnt family member 3A acts_upstream_of_or_within ISO MGI:1857088|MGI:1857489 (MGI:3037351|PMID:12636920), (MGI:3611726|PMID:16291790), (MGI:64780|PMID:8299937) RGD PMID:8299937 PMID:12636920 PMID:16291790 MGI:3037351 MGI:3611726 MGI:64780 NCBI chr10:44,034,174...44,078,463
Ensembl chr10:44,034,194...44,078,324 		JBrowse link
G Wnt5a Wnt family member 5A acts_upstream_of_or_within ISO MGI:1298218 (MGI:4413372|PMID:19795512) RGD PMID:19795512 MGI:4413372 NCBI chr16:3,695,667...3,718,234
Ensembl chr16:3,697,032...3,718,234 		JBrowse link
G Xrcc2 X-ray repair cross complementing 2 acts_upstream_of_or_within ISO MGI:1927345 (MGI:3708426|PMID:17116431) RGD PMID:17116431 MGI:3708426 NCBI chr 4:9,423,873...9,502,980
Ensembl chr 4:9,423,898...9,442,482 		JBrowse link
G Zeb2 zinc finger E-box binding homeobox 2 acts_upstream_of_or_within ISO MGI:2387501 (MGI:3590396|PMID:16157277), (MGI:3624924|PMID:16598713) RGD PMID:16157277 PMID:16598713 MGI:3590396 MGI:3624924 NCBI chr 3:29,219,765...29,342,094
Ensembl chr 3:29,218,301...29,345,157 		JBrowse link
Wnt signaling pathway involved in somitogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dkk1 dickkopf WNT signaling pathway inhibitor 1 acts_upstream_of_or_within ISO MGI:108078|MGI:892014 (MGI:3793375|PMID:18257070) RGD PMID:18257070 MGI:3793375 NCBI chr 1:228,381,521...228,385,202
Ensembl chr 1:228,381,521...228,385,202 		JBrowse link
G Lrp6 LDL receptor related protein 6 acts_upstream_of_or_within
involved_in		 ISO
IBA		 MGI:2673982 (MGI:3055483|PMID:15469977)
PMID:21873635		 RGD PMID:15469977 PMID:21873635 MGI:3055483, RGD:13792537 NCBI chr 4:167,266,581...167,400,155
Ensembl chr 4:167,270,353...167,400,497 		JBrowse link
G Sfrp1 secreted frizzled-related protein 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:108078|MGI:1329040 (MGI:3793375|PMID:18257070)		 Ensembl
RGD		 PMID:18257070 GO_REF:0000107 MGI:3793375 NCBI chr16:68,575,763...68,613,905
Ensembl chr16:68,575,763...68,614,286 		JBrowse link
G Sfrp2 secreted frizzled-related protein 2 acts_upstream_of_or_within ISO MGI:1329040|MGI:892014 (MGI:3793375|PMID:18257070) RGD PMID:18257070 MGI:3793375 NCBI chr 2:169,089,517...169,097,064
Ensembl chr 2:169,089,517...169,097,063 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19748
    multicellular organismal process 9185
      multicellular organism development 5165
        embryo development 1357
          somite development 95
            dermatome development + 4
            myotome development + 4
            sclerotome development + 5
            somitogenesis + 77
Path 2
Term Annotations click to browse term
  biological_process 19748
    developmental process 6931
      anatomical structure development 6386
        multicellular organism development 5165
          embryo development 1357
            somite development 95
              dermatome development + 4
              myotome development + 4
              sclerotome development + 5
              somitogenesis + 77
paths to the root