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ONTOLOGY REPORT - ANNOTATIONS


Term:hepaticobiliary system development
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Accession:GO:0061008 term browser browse the term
Definition:The progression of the hepaticobiliary system over time, from its formation to the mature structure. The hepaticobiliary system is responsible for metabolic and catabolic processing of small molecules absorbed from the blood or gut, hormones and serum proteins, detoxification, storage of glycogen, triglycerides, metals and lipid soluble vitamins and excretion of bile. Included are the synthesis of albumin, blood coagulation factors, complement, and specific binding proteins.
Synonyms:exact_synonym: hepatobiliary system development



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common bile duct development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ahr aryl hydrocarbon receptor involved_in ISO (MGI:3794480|PMID:16443691) RGD PMID:16443691 MGI:3794480 NCBI chr 6:52,234,089...52,271,568
Ensembl chr 6:52,234,089...52,271,568
JBrowse link
G Hes1 hes family bHLH transcription factor 1 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:2149672 (MGI:4355651|PMID:19619492)
Ensembl
RGD
PMID:19619492 GO_REF:0000107 MGI:4355651 NCBI chr11:70,705,763...70,708,176
Ensembl chr11:70,705,764...70,708,192
JBrowse link
G Hhex hematopoietically expressed homeobox acts_upstream_of_or_within ISO MGI:3721426 (MGI:3720549|PMID:17580084) RGD PMID:17580084 MGI:3720549 NCBI chr 1:235,190,455...235,196,042
Ensembl chr 1:235,190,455...235,196,042
JBrowse link
G Mks1 MKS transition zone complex subunit 1 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:4410614 (MGI:4367169|PMID:19776033)
Ensembl
RGD
PMID:19776033 GO_REF:0000107 MGI:4367169 NCBI chr10:72,655,921...72,667,007
Ensembl chr10:72,655,921...72,666,655
JBrowse link
G Sox17 SRY-box transcription factor 17 acts_upstream_of_or_within ISO (MGI:4421275|PMID:19913509) RGD PMID:19913509 MGI:4421275 NCBI chr 5:15,016,660...15,022,228
Ensembl chr 5:15,016,731...15,022,228
JBrowse link
determination of liver left/right asymmetry term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ccdc39 coiled-coil domain containing 39 involved_in ISO (PMID:22693285) RGD PMID:22693285 NCBI chr 2:116,665,261...116,703,364
Ensembl chr 2:116,665,261...116,703,350
JBrowse link
G Ccdc40 coiled-coil domain containing 40 involved_in ISO
IEA
(PMID:22693285)
GO_REF:0000107
RGD
Ensembl
PMID:22693285 GO_REF:0000107 NCBI chr10:104,486,748...104,527,284
Ensembl chr10:104,486,748...104,527,243
JBrowse link
G Dnaaf1 dynein, axonemal, assembly factor 1 involved_in ISO
IEA
(PMID:19944405)
GO_REF:0000107
RGD
Ensembl
PMID:19944405 GO_REF:0000107 NCBI chr19:47,624,534...47,652,314
Ensembl chr19:47,624,181...47,652,313
JBrowse link
G Nphp3 nephrocystin 3 involved_in ISO (PMID:20007846) RGD PMID:20007846 NCBI chr 8:104,621,908...104,662,383
Ensembl chr 8:104,621,864...104,662,383
JBrowse link
G Pkd2 polycystin 2, transient receptor potential cation channel involved_in ISO (PMID:21719175) RGD PMID:21719175 NCBI chr14:5,237,135...5,280,455
Ensembl chr14:5,237,135...5,280,825
JBrowse link
G Zic3 Zic family member 3 involved_in ISO (PMID:9354794) RGD PMID:9354794 NCBI chr  X:136,123,662...136,134,295
Ensembl chr  X:136,124,026...136,134,746
JBrowse link
gall bladder development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hhex hematopoietically expressed homeobox acts_upstream_of_or_within ISO MGI:3721426 (MGI:3720549|PMID:17580084) RGD PMID:17580084 MGI:3720549 NCBI chr 1:235,190,455...235,196,042
Ensembl chr 1:235,190,455...235,196,042
JBrowse link
G Nipbl NIPBL, cohesin loading factor involved_in ISO (PMID:19242925) RGD PMID:19242925 NCBI chr 2:57,399,443...57,586,770
Ensembl chr 2:57,399,445...57,565,899
JBrowse link
G Sox17 SRY-box transcription factor 17 acts_upstream_of_or_within ISO MGI:2179440 (MGI:4421275|PMID:19913509) RGD PMID:19913509 MGI:4421275 NCBI chr 5:15,016,660...15,022,228
Ensembl chr 5:15,016,731...15,022,228
JBrowse link
hepatic duct development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hhex hematopoietically expressed homeobox acts_upstream_of_or_within ISO MGI:3721426 (MGI:3720549|PMID:17580084) RGD PMID:17580084 MGI:3720549 NCBI chr 1:235,190,455...235,196,042
Ensembl chr 1:235,190,455...235,196,042
JBrowse link
hepatoblast differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ggt1 gamma-glutamyltransferase 1 IEP RGD PMID:10934156 RGD:14701049 NCBI chr20:13,074,695...13,104,095
Ensembl chr20:13,074,700...13,108,442
JBrowse link
G Hhex hematopoietically expressed homeobox acts_upstream_of_or_within ISO MGI:3721426 (MGI:3720549|PMID:17580084) RGD PMID:17580084 MGI:3720549 NCBI chr 1:235,190,455...235,196,042
Ensembl chr 1:235,190,455...235,196,042
JBrowse link
G Hnf1b HNF1 homeobox B acts_upstream_of_or_within ISO MGI:1857856 (MGI:3807614|PMID:18635606) RGD PMID:18635606 MGI:3807614 NCBI chr10:68,735,894...68,789,888
Ensembl chr10:68,735,894...68,789,888
JBrowse link
hepatocyte differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Anxa1 annexin A1 involved_in IEP
IBA
PMID:21873635 RGD
GO_Central
PMID:11668598 PMID:21873635 RGD:2306909, RGD:13792537 NCBI chr 1:217,861,175...217,877,205
Ensembl chr 1:217,861,175...217,877,343
JBrowse link
G Cps1 carbamoyl-phosphate synthase 1 IEP RGD PMID:12939595 RGD:4144098 NCBI chr 9:68,614,153...68,737,037
Ensembl chr 9:68,614,153...68,737,033
JBrowse link
G Cyp1a1 cytochrome P450, family 1, subfamily a, polypeptide 1 IEP RGD PMID:17574236 RGD:2306655 NCBI chr 8:58,096,021...58,102,130
Ensembl chr 8:58,096,077...58,102,125
JBrowse link
G E2f7 E2F transcription factor 7 involved_in ISS
IEA
ISO
GO_REF:0000024
GO_REF:0000107
(MGI:5449497|PMID:23064266)
UniProt
Ensembl
RGD
PMID:23064266 GO_REF:0000024 GO_REF:0000107 MGI:5449497 NCBI chr 7:46,150,533...46,192,739
Ensembl chr 7:46,151,293...46,192,734
JBrowse link
G E2f8 E2F transcription factor 8 involved_in ISS
ISO
IEA
GO_REF:0000024
(MGI:5449497|PMID:23064266), (MGI:5449498|PMID:23064264)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:23064264 PMID:23064266 GO_REF:0000024 GO_REF:0000107 MGI:5449497 MGI:5449498 NCBI chr 1:98,565,717...98,584,265
Ensembl chr 1:98,565,717...98,584,098
JBrowse link
G Ggt1 gamma-glutamyltransferase 1 IEP RGD PMID:10934156 RGD:14701049 NCBI chr20:13,074,695...13,104,095
Ensembl chr20:13,074,700...13,108,442
JBrowse link
G Hhex hematopoietically expressed homeobox acts_upstream_of_or_within ISO MGI:2448661 (MGI:1891782|PMID:11027604) RGD PMID:11027604 MGI:1891782 NCBI chr 1:235,190,455...235,196,042
Ensembl chr 1:235,190,455...235,196,042
JBrowse link
G Hnf1b HNF1 homeobox B IEP RGD PMID:18286537 RGD:2312718 NCBI chr10:68,735,894...68,789,888
Ensembl chr10:68,735,894...68,789,888
JBrowse link
G Hnf4a hepatocyte nuclear factor 4, alpha involved_in IEP
IEA
GO_REF:0000002 InterPro
RGD
PMID:19621519 GO_REF:0000002, RGD:12904750 NCBI chr 3:152,186,787...152,248,320
Ensembl chr 3:152,186,787...152,248,320
JBrowse link
G Itga2 integrin subunit alpha 2 IEP RGD PMID:16458388 RGD:2307397 NCBI chr 2:46,520,345...46,621,487
Ensembl chr 2:46,523,948...46,621,481
JBrowse link
G Krt18 keratin 18 IEP RGD PMID:24340101 PMID:28941653 RGD:27226712, RGD:27226713 NCBI chr 7:133,157,486...133,161,162
Ensembl chr 7:133,157,475...133,161,166
JBrowse link
G Pck1 phosphoenolpyruvate carboxykinase 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:161,930,256...161,936,205
Ensembl chr 3:161,930,256...161,936,191
JBrowse link
G Pck2 phosphoenolpyruvate carboxykinase 2 (mitochondrial) involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr15:29,027,891...29,036,729
Ensembl chr15:29,027,894...29,037,283
JBrowse link
G Prox1 prospero homeobox 1 involved_in
acts_upstream_of_or_within
ISO (PMID:15232737) RGD PMID:15232737 NCBI chr13:101,669,184...101,719,804
Ensembl chr13:101,669,184...101,711,183
JBrowse link
G Taf10 TATA-box binding protein associated factor 10 acts_upstream_of_or_within ISO MGI:2176946|MGI:3606185 (MGI:3806427|PMID:18722179) RGD PMID:18722179 MGI:3806427 NCBI chr 1:160,095,108...160,096,401
Ensembl chr 1:160,095,108...160,096,376
JBrowse link
G Wnt1 Wnt family member 1 IMP RGD PMID:20413689 RGD:2326223 NCBI chr 7:129,938,604...129,942,651
Ensembl chr 7:129,938,604...129,942,651
JBrowse link
hepatocyte proliferation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cebpb CCAAT/enhancer binding protein beta involved_in IDA
ISO
PMID:10635333
(MGI:3778721|PMID:10635333)
RGD PMID:10635333 PMID:10635333 MGI:3778721, RGD:10047310 NCBI chr 3:156,398,035...156,399,466
Ensembl chr 3:156,397,052...156,399,473
JBrowse link
G Fgl1 fibrinogen-like 1 involved_in ISS
IEA
ISO
GO_REF:0000024
GO_REF:0000107
(PMID:19880967)
UniProt
Ensembl
RGD
PMID:19880967 GO_REF:0000024 GO_REF:0000107 NCBI chr16:51,120,652...51,150,907
Ensembl chr16:51,120,694...51,151,093
JBrowse link
G Il6 interleukin 6 involved_in ISS
ISO
GO_REF:0000024
(MGI:84432|PMID:8910279)
UniProt
RGD
PMID:8910279 GO_REF:0000024 MGI:84432 NCBI chr 4:5,214,602...5,219,178
Ensembl chr 4:5,213,394...5,219,178
JBrowse link
G Mki67 marker of proliferation Ki-67 acts_upstream_of_or_within ISO (MGI:5616947|PMID:25446530) RGD PMID:25446530 MGI:5616947 NCBI chr 1:190,496,319...190,522,983
Ensembl chr 1:190,496,319...190,522,762
JBrowse link
G Notch2 notch receptor 2 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:3617328 (MGI:5616947|PMID:25446530)
Ensembl
RGD
PMID:25446530 GO_REF:0000107 MGI:5616947 NCBI chr 2:185,610,594...185,744,088
Ensembl chr 2:185,610,589...185,744,088
JBrowse link
G Nr1h4 nuclear receptor subfamily 1, group H, member 4 IEP RGD PMID:29138817 RGD:15042871 NCBI chr 7:23,846,122...23,942,085
Ensembl chr 7:23,846,122...23,942,047
JBrowse link
G Prox1 prospero homeobox 1 acts_upstream_of_or_within ISO MGI:2386336 (MGI:1860507|PMID:10888866) RGD PMID:10888866 MGI:1860507 NCBI chr13:101,669,184...101,719,804
Ensembl chr13:101,669,184...101,711,183
JBrowse link
G Rps6ka1 ribosomal protein S6 kinase A1 involved_in ISS
ISO
GO_REF:0000024
(MGI:3778721|PMID:10635333)
UniProt
RGD
PMID:10635333 GO_REF:0000024 MGI:3778721 NCBI chr 5:146,079,018...146,118,272
Ensembl chr 5:146,079,021...146,118,272
JBrowse link
G Tgfa transforming growth factor alpha involved_in IDA
ISO
PMID:10635333
(MGI:3778721|PMID:10635333)
RGD PMID:10635333 PMID:10635333 MGI:3778721, RGD:10047310 NCBI chr 4:118,618,043...118,700,897
Ensembl chr 4:118,618,269...118,700,894
JBrowse link
intrahepatic bile duct development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gak cyclin G associated kinase acts_upstream_of_or_within ISO MGI:2176228|MGI:5305733 (MGI:5305417|PMID:18434600) RGD PMID:18434600 MGI:5305417 NCBI chr14:1,089,853...1,164,098
Ensembl chr14:1,089,866...1,216,398
JBrowse link
G Notch2 notch receptor 2 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:3617328 (MGI:5616947|PMID:25446530)
Ensembl
RGD
PMID:25446530 GO_REF:0000107 MGI:5616947 NCBI chr 2:185,610,594...185,744,088
Ensembl chr 2:185,610,589...185,744,088
JBrowse link
G Sox9 SRY-box transcription factor 9 acts_upstream_of_or_within ISO MGI:2177602|MGI:2385468 (MGI:3852603|PMID:19403103) RGD PMID:19403103 MGI:3852603 NCBI chr10:97,806,485...97,811,994
Ensembl chr10:97,806,485...97,811,994
JBrowse link
liver development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aacs acetoacetyl-CoA synthetase IDA RGD PMID:10513626 RGD:2301023 NCBI chr12:31,113,098...31,156,411
Ensembl chr12:31,113,098...31,160,954
JBrowse link
G Acadm acyl-CoA dehydrogenase medium chain acts_upstream_of_or_within ISO MGI:3692446 (MGI:3692159|PMID:16121256) RGD PMID:16121256 MGI:3692159 NCBI chr 2:242,858,865...242,883,036
Ensembl chr 2:242,858,865...242,883,147
JBrowse link
G Acat1 acetyl-CoA acetyltransferase 1 IEP RGD PMID:5166591 RGD:2326169 NCBI chr 8:53,979,813...54,008,861
Ensembl chr 8:53,979,813...54,008,855
JBrowse link
G Acat2 acetyl-CoA acetyltransferase 2 IEP RGD PMID:5166591 RGD:2326169 NCBI chr 1:47,695,833...47,713,879
Ensembl chr 1:47,695,788...47,752,821
JBrowse link
G Aco1 aconitase 1 IEP RGD PMID:755797 RGD:11552585 NCBI chr 5:55,259,841...55,315,872
Ensembl chr 5:55,259,827...55,316,391
JBrowse link
G Aco2 aconitase 2 IEP RGD PMID:755797 RGD:11552585 NCBI chr 7:113,385,677...113,428,794
Ensembl chr 7:113,385,646...113,428,261
JBrowse link
G Ada adenosine deaminase acts_upstream_of_or_within ISO MGI:1857117|MGI:2155977 (MGI:72798|PMID:7731963), (MGI:74163|PMID:7670465) RGD PMID:7670465 PMID:7731963 MGI:72798 MGI:74163 NCBI chr 3:152,398,745...152,422,854
Ensembl chr 3:152,398,747...152,447,088
JBrowse link
G Adrb2 adrenoceptor beta 2 IEP RGD PMID:8408243 RGD:8548535 NCBI chr18:55,642,459...55,644,501
Ensembl chr18:55,502,903...55,644,512
JBrowse link
G Afp alpha-fetoprotein IEP RGD PMID:16822301 RGD:2292045 NCBI chr14:17,573,412...17,591,476
Ensembl chr14:17,573,412...17,591,480
JBrowse link
G Ahr aryl hydrocarbon receptor involved_in ISO (MGI:1889403|PMID:10973493), (MGI:3794480|PMID:16443691), (MGI:72762|PMID:7732381), (MGI:81320|PMID:8692887) RGD PMID:7732381 PMID:8692887 PMID:10973493 PMID:16443691 MGI:1889403 MGI:3794480 MGI:72762 MGI:81320 NCBI chr 6:52,234,089...52,271,568
Ensembl chr 6:52,234,089...52,271,568
JBrowse link
G Ak2 adenylate kinase 2 IEP RGD PMID:5123889 RGD:5490208 NCBI chr 5:141,308,650...141,364,633
Ensembl chr 5:141,346,063...141,364,632
JBrowse link
G Ak3 adenylate kinase 3 IEP RGD PMID:5123889 RGD:5490208 NCBI chr 1:226,737,472...226,764,647
Ensembl chr 1:226,739,318...226,764,625
JBrowse link
G Ak4 adenylate kinase 4 IEP RGD PMID:9813319 RGD:632174 NCBI chr 5:116,039,222...116,099,064
Ensembl chr 5:116,039,616...116,098,618
JBrowse link
G Aldh1a1 aldehyde dehydrogenase 1 family, member A1 IEP RGD PMID:14729401 RGD:1643117 NCBI chr 1:218,000,470...218,152,962
Ensembl chr 1:218,042,127...218,152,961
JBrowse link
G Aldh1a2 aldehyde dehydrogenase 1 family, member A2 IEP RGD PMID:14729401 RGD:1643117 NCBI chr 8:71,877,850...71,957,107
Ensembl chr 8:71,877,850...71,957,107
JBrowse link
G Aldh2 aldehyde dehydrogenase 2 family member IEP RGD PMID:16291827 RGD:2300311 NCBI chr12:34,949,549...34,982,527
Ensembl chr12:34,901,219...34,982,521
JBrowse link
G Aldh9a1 aldehyde dehydrogenase 9 family, member A1 IEP RGD PMID:19150623 RGD:2313411 NCBI chr13:79,505,738...79,522,539
Ensembl chr13:79,505,695...79,540,568
JBrowse link
G Aldob aldolase, fructose-bisphosphate B IEP RGD PMID:8641049 RGD:2313428 NCBI chr 5:63,889,045...63,902,086
Ensembl chr 5:63,889,046...63,902,116
JBrowse link
G Ang angiogenin IEP RGD PMID:2440105 RGD:2325721 NCBI chr15:24,317,733...24,323,361 JBrowse link
G Arf6 ADP-ribosylation factor 6 acts_upstream_of_or_within ISO MGI:3662650 (MGI:3653957|PMID:16880525) RGD PMID:16880525 MGI:3653957 NCBI chr 6:87,853,742...87,854,890
Ensembl chr 6:87,840,142...87,874,114
JBrowse link
G Arg1 arginase 1 IEP RGD PMID:8690412 RGD:4144072 NCBI chr 1:20,475,878...20,488,422
Ensembl chr 1:20,475,968...20,488,422
JBrowse link
G Asl argininosuccinate lyase IEP
IDA
DNA:increased methylation:5' utr RGD PMID:10473900 PMID:9535537 RGD:1599266, RGD:1599268 NCBI chr12:26,659,664...26,677,136
Ensembl chr12:26,659,565...26,679,662
JBrowse link
G Asns asparagine synthetase (glutamine-hydrolyzing) IEP RGD PMID:237754 RGD:2316008 NCBI chr 4:35,784,995...35,803,474
Ensembl chr 4:35,785,237...35,803,423
JBrowse link
G Ass1 argininosuccinate synthase 1 IEP RGD PMID:10473900 PMID:9395312 RGD:1599266, RGD:4139912 NCBI chr 3:14,747,355...14,796,909
Ensembl chr 3:14,747,368...14,796,903
JBrowse link
G Atf2 activating transcription factor 2 involved_in ISO MGI:2443472 (MGI:3719954|PMID:17699753) RGD PMID:17699753 MGI:3719954 NCBI chr 3:58,718,323...58,795,280
Ensembl chr 3:58,718,332...58,795,236
JBrowse link
G Atf7 activating transcription factor 7 involved_in ISO MGI:109349 (MGI:3719954|PMID:17699753) RGD PMID:17699753 MGI:3719954 NCBI chr 7:133,660,491...133,750,902
Ensembl chr 7:133,663,294...133,750,848
JBrowse link
G Atg7 autophagy related 7 acts_upstream_of_or_within ISO MGI:2176073|MGI:3587769 (MGI:3587473|PMID:15866887) RGD PMID:15866887 MGI:3587473 NCBI chr 4:147,718,663...147,925,656
Ensembl chr 4:147,718,752...147,925,593
JBrowse link
G Atp5f1b ATP synthase F1 subunit beta IEP RGD PMID:8420961 RGD:13792579 NCBI chr 7:515,454...521,858
Ensembl chr 7:515,460...567,273
JBrowse link
G Atp7a ATPase copper transporting alpha IEP RGD PMID:25349135 RGD:11341669 NCBI chr  X:71,094,144...71,201,550
Ensembl chr  X:71,094,202...71,198,354
JBrowse link
G Baat bile acid CoA:amino acid N-acyltransferase IEP RGD PMID:7575455 RGD:69770 NCBI chr 5:63,851,668...63,860,641
Ensembl chr 5:63,850,705...63,860,685
JBrowse link
G Bdh1 3-hydroxybutyrate dehydrogenase 1 IEP RGD PMID:2806552 RGD:4105456 NCBI chr11:69,302,534...69,343,173
Ensembl chr11:69,302,534...69,337,671
JBrowse link
G Cad carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase IEP RGD PMID:14160653 RGD:2303538 NCBI chr 6:25,292,133...25,315,176
Ensembl chr 6:25,292,133...25,319,861
JBrowse link
G Cadm1 cell adhesion molecule 1 IMP RGD PMID:17326163 RGD:2289097 NCBI chr 8:47,847,836...48,178,703
Ensembl chr 8:47,847,325...48,182,833
JBrowse link
G Cast calpastatin IEP RGD PMID:16871587 RGD:5683869 NCBI chr 2:3,973,112...4,082,658
Ensembl chr 2:3,973,112...4,082,659
JBrowse link
G Ccnd1 cyclin D1 IEP RGD PMID:15809057 RGD:1582338 NCBI chr 1:200,089,002...200,098,524
Ensembl chr 1:200,089,002...200,098,602
JBrowse link
G Ccnd2 cyclin D2 IEP RGD PMID:15809057 RGD:1582338 NCBI chr 4:159,966,883...159,989,261
Ensembl chr 4:159,962,363...159,989,495
JBrowse link
G Ccne1 cyclin E1 IEP RGD PMID:15809057 RGD:1582338 NCBI chr 1:90,781,947...90,791,188
Ensembl chr 1:90,781,949...90,791,101
JBrowse link
G Cdk5rap3 CDK5 regulatory subunit associated protein 3 involved_in ISS
ISO
GO_REF:0000024
(MGI:6284072|PMID:30635284)
UniProt
RGD
PMID:30635284 GO_REF:0000024 MGI:6284072 NCBI chr10:81,894,393...81,903,581
Ensembl chr10:81,894,393...81,903,590
JBrowse link
G Cdkn2b cyclin-dependent kinase inhibitor 2B IEP RGD PMID:11042273 RGD:7248763 NCBI chr 5:104,009,839...104,019,082
Ensembl chr 5:104,010,680...104,019,050
JBrowse link
G Cebpa CCAAT/enhancer binding protein alpha acts_upstream_of_or_within
involved_in
IEP
ISO
ISS
MGI:2177068 (MGI:3688957|PMID:17021047)
(MGI:83240|PMID:8798745)
GO_REF:0000024
RGD
UniProt
PMID:8798745 PMID:17021047 PMID:16172914 GO_REF:0000024 MGI:3688957 MGI:83240, RGD:1625368 NCBI chr 1:87,759,631...87,762,303
Ensembl chr 1:87,759,433...87,762,412
JBrowse link
G Cebpb CCAAT/enhancer binding protein beta IEP RGD PMID:1377818 RGD:69946 NCBI chr 3:156,398,035...156,399,466
Ensembl chr 3:156,397,052...156,399,473
JBrowse link
G Cebpg CCAAT/enhancer binding protein gamma involved_in IEP PMID:1377818 UniProt PMID:1377818 RGD:69946 NCBI chr 1:87,683,060...87,692,772
Ensembl chr 1:87,684,019...87,694,569
JBrowse link
G Cfc1 cripto, FRL-1, cryptic family 1 acts_upstream_of_or_within ISO MGI:2179530 (MGI:1346729|PMID:10521397) RGD PMID:10521397 MGI:1346729 NCBI chr 9:36,742,106...36,751,931
Ensembl chr 9:36,739,071...36,751,930
JBrowse link
G Chek1_v2 checkpoint kinase 1, variant 2 IEP RGD PMID:11687578 RGD:70230
G Cit citron rho-interacting serine/threonine kinase IEP RGD PMID:12411428 RGD:628497 NCBI chr12:40,603,073...40,764,846
Ensembl chr12:40,605,563...40,763,860
JBrowse link
G Cited2 Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2 acts_upstream_of_or_within
involved_in
ISO MGI:2385355 (MGI:3847632|PMID:17644732)
(MGI:3813432|PMID:17932483)
RGD PMID:17644732 PMID:17932483 MGI:3813432 MGI:3847632 NCBI chr 1:12,312,426...12,314,869
Ensembl chr 1:12,312,160...12,314,897
JBrowse link
G Cobl cordon-bleu WH2 repeat protein acts_upstream_of_or_within ISO (PMID:7586755) RGD PMID:7586755 NCBI chr14:86,828,137...87,060,682
Ensembl chr14:86,828,139...87,060,800
JBrowse link
G Cp ceruloplasmin IEP RGD PMID:2332446 RGD:728241 NCBI chr 2:102,439,433...102,498,075
Ensembl chr 2:102,439,624...102,498,075
JBrowse link
G Cps1 carbamoyl-phosphate synthase 1 IEP RGD PMID:8690412 RGD:4144072 NCBI chr 9:68,614,153...68,737,037
Ensembl chr 9:68,614,153...68,737,033
JBrowse link
G Ctnnb1 catenin beta 1 IEP RGD PMID:17236583 RGD:1599633 NCBI chr 8:120,640,008...120,667,110
Ensembl chr 8:120,639,995...120,667,111
JBrowse link
G Cyp1a1 cytochrome P450, family 1, subfamily a, polypeptide 1 IEP RGD PMID:12162855 RGD:727721 NCBI chr 8:58,096,021...58,102,130
Ensembl chr 8:58,096,077...58,102,125
JBrowse link
G Cyp2d3 cytochrome P450, family 2, subfamily d, polypeptide 3 IEP RGD PMID:9929501 RGD:2301678 NCBI chr 7:113,917,711...113,922,068
Ensembl chr 7:113,908,947...113,922,084
JBrowse link
G Dbp D-box binding PAR bZIP transcription factor IEP RGD PMID:2331750 RGD:727680 NCBI chr 1:96,175,796...96,180,745
Ensembl chr 1:96,175,440...96,180,745
JBrowse link
G Ddx39b DExD-box helicase 39B IEP RGD PMID:1618789 RGD:632224 NCBI chr20:3,547,702...3,585,064
Ensembl chr20:3,572,056...3,584,996
JBrowse link
G Dut deoxyuridine triphosphatase IEP RGD PMID:11121581 RGD:5133681 NCBI chr 3:112,498,864...112,509,994
Ensembl chr 3:112,498,982...112,510,771
JBrowse link
G Egfr epidermal growth factor receptor IEP RGD PMID:12454858 RGD:2289959 NCBI chr14:91,176,931...91,349,722
Ensembl chr14:91,177,067...91,344,382
JBrowse link
G Elk1 ETS transcription factor ELK1 acts_upstream_of_or_within ISO (MGI:6472092|PMID:31877385) RGD PMID:31877385 MGI:6472092 NCBI chr  X:1,138,826...1,155,713
Ensembl chr  X:1,139,756...1,155,713
JBrowse link
G Enpp1 ectonucleotide pyrophosphatase/phosphodiesterase 1 IEP RGD PMID:10231554 RGD:13204733 NCBI chr 1:20,698,746...20,763,741
Ensembl chr 1:20,698,764...20,763,715
JBrowse link
G Ephx1 epoxide hydrolase 1 IEP RGD PMID:2469391 RGD:4889418 NCBI chr13:92,714,315...92,744,124
Ensembl chr13:92,714,315...92,790,235
JBrowse link
G Erbb2 erb-b2 receptor tyrosine kinase 2 IEP RGD PMID:12454858 RGD:2289959 NCBI chr10:83,411,197...83,435,078
Ensembl chr10:83,411,313...83,435,078
JBrowse link
G Foxm1 forkhead box M1 acts_upstream_of_or_within ISO MGI:3522201 (MGI:3522012|PMID:15531365) RGD PMID:15531365 MGI:3522012 NCBI chr 4:161,639,561...161,652,012
Ensembl chr 4:161,638,816...161,650,684
JBrowse link
G Fpgs folylpolyglutamate synthase IEP RGD PMID:1435744 RGD:2315102 NCBI chr 3:15,972,800...15,993,592
Ensembl chr 3:15,972,800...15,993,563
JBrowse link
G Fscn1 fascin actin-bundling protein 1 IEP RGD PMID:18855019 RGD:2317768 NCBI chr12:11,597,042...11,610,183
Ensembl chr12:11,597,048...11,610,211
JBrowse link
G Gata6 GATA binding protein 6 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:3576383 (MGI:3575862|PMID:15767668)
Ensembl
RGD
PMID:15767668 GO_REF:0000107 MGI:3575862 NCBI chr18:2,188,121...2,219,532
Ensembl chr18:2,188,121...2,219,532
JBrowse link
G Gfer growth factor, augmenter of liver regeneration involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:13,718,489...13,721,782
Ensembl chr10:13,718,489...13,720,869
JBrowse link
G Gnpnat1 glucosamine-phosphate N-acetyltransferase 1 IEP RGD PMID:3996734 RGD:2302171 NCBI chr15:18,596,180...18,608,854
Ensembl chr15:18,596,442...18,608,739
JBrowse link
G H19 H19, imprinted maternally expressed transcript (non-protein coding) IEP RGD PMID:8981228 RGD:1342456 NCBI chr 1:197,730,698...197,733,374
Ensembl chr 1:197,730,698...197,733,134
JBrowse link
G Hes1 hes family bHLH transcription factor 1 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:2149672 (MGI:3525024|PMID:15578515)
Ensembl
RGD
PMID:15578515 GO_REF:0000107 MGI:3525024 NCBI chr11:70,705,763...70,708,176
Ensembl chr11:70,705,764...70,708,192
JBrowse link
G Hgf hepatocyte growth factor acts_upstream_of_or_within ISO (MGI:3653957|PMID:16880525) RGD PMID:16880525 MGI:3653957 NCBI chr 4:18,673,736...18,745,582
Ensembl chr 4:18,677,101...18,745,409
JBrowse link
G Hhex hematopoietically expressed homeobox acts_upstream_of_or_within ISO MGI:2177762|MGI:2448661|MGI:2449914 (MGI:1855906|PMID:10804184), (MGI:1891782|PMID:11027604), (MGI:3487182|PMID:15459110), (MGI:3703395|PMID:16364283) RGD PMID:10804184 PMID:11027604 PMID:15459110 PMID:16364283 MGI:1855906 MGI:1891782 MGI:3487182 MGI:3703395 NCBI chr 1:235,190,455...235,196,042
Ensembl chr 1:235,190,455...235,196,042
JBrowse link
G Hlx H2.0-like homeobox acts_upstream_of_or_within ISO MGI:2182089 (MGI:79044|PMID:8557196) RGD PMID:8557196 MGI:79044 NCBI chr13:96,280,335...96,285,750
Ensembl chr13:96,280,339...96,285,750
JBrowse link
G Hmbs hydroxymethylbilane synthase IDA RGD PMID:971328 RGD:25394583 NCBI chr 8:44,673,554...44,680,950
Ensembl chr 8:44,673,554...44,680,957
JBrowse link
G Hmgcl 3-hydroxy-3-methylglutaryl-CoA lyase IEP RGD PMID:13990 RGD:2326149 NCBI chr 5:148,178,203...148,192,072
Ensembl chr 5:148,178,252...148,192,068
JBrowse link
G Hmgcs1 3-hydroxy-3-methylglutaryl-CoA synthase 1 IEP RGD PMID:5166591 RGD:2326169 NCBI chr 2:51,649,368...51,667,100
Ensembl chr 2:51,649,497...51,667,100
JBrowse link
G Hmgcs2 3-hydroxy-3-methylglutaryl-CoA synthase 2 IEP RGD PMID:8620869 RGD:2326125 NCBI chr 2:185,875,609...185,903,505
Ensembl chr 2:185,875,616...185,902,130
JBrowse link
G Hnf1a HNF1 homeobox A acts_upstream_of_or_within ISO MGI:2384429 (MGI:1202489|PMID:9566924) RGD PMID:9566924 MGI:1202489 NCBI chr12:41,638,536...41,672,806
Ensembl chr12:41,645,587...41,672,104
JBrowse link
G Hnf1b HNF1 homeobox B involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000002
MGI:1857856 (MGI:3807614|PMID:18635606)
InterPro
RGD
PMID:18635606 GO_REF:0000002 MGI:3807614 NCBI chr10:68,735,894...68,789,888
Ensembl chr10:68,735,894...68,789,888
JBrowse link
G Hnrnpd heterogeneous nuclear ribonucleoprotein D IEP RGD PMID:20102719 RGD:10042969 NCBI chr14:9,615,375...9,638,975
Ensembl chr14:9,615,479...9,633,786
JBrowse link
G Hnrnpk heterogeneous nuclear ribonucleoprotein K IEP RGD PMID:16488668 RGD:10002779 NCBI chr17:6,262,936...6,275,001
Ensembl chr17:6,262,998...6,274,997
JBrowse link
G Hp haptoglobin IDA RGD PMID:16172914 RGD:1625368 NCBI chr19:37,539,626...37,544,178
Ensembl chr19:37,539,627...37,544,523
JBrowse link
G Hras HRas proto-oncogene, GTPase IEP RGD PMID:2581126 RGD:14694813 NCBI chr 1:196,290,127...196,299,823
Ensembl chr 1:196,296,263...196,300,615
JBrowse link
G Icmt isoprenylcysteine carboxyl methyltransferase acts_upstream_of_or_within ISO MGI:2183607 (MGI:2182507|PMID:12105862) RGD PMID:12105862 MGI:2182507 NCBI chr 5:162,804,368...162,811,129
Ensembl chr 5:162,804,368...162,811,128
JBrowse link
G Ift88 intraflagellar transport 88 acts_upstream_of_or_within ISO MGI:2157527 (MGI:2155922|PMID:11773599), (MGI:892192|PMID:9176412) RGD PMID:9176412 PMID:11773599 MGI:2155922 MGI:892192 NCBI chr15:31,573,325...31,666,068
Ensembl chr15:31,573,376...31,672,147
JBrowse link
G Igf2r insulin-like growth factor 2 receptor IDA RGD PMID:12127995 RGD:2311626 NCBI chr 1:47,979,109...48,067,501
Ensembl chr 1:47,979,109...48,067,501
JBrowse link
G Insr insulin receptor IEP RGD PMID:6364984 RGD:14701029 NCBI chr12:1,193,193...1,330,976
Ensembl chr12:1,197,100...1,330,883
JBrowse link
G Jarid2 jumonji and AT-rich interaction domain containing 2 acts_upstream_of_or_within ISO MGI:1856923 (MGI:1096257|PMID:9376320) RGD PMID:9376320 MGI:1096257 NCBI chr17:19,777,487...19,957,696
Ensembl chr17:19,777,266...19,955,690
JBrowse link
G Jun Jun proto-oncogene, AP-1 transcription factor subunit acts_upstream_of_or_within ISO MGI:2149630 (MGI:1338596|PMID:10352021) RGD PMID:10352021 MGI:1338596 NCBI chr 5:109,894,175...109,897,268
Ensembl chr 5:109,893,145...109,897,656
JBrowse link
G Klf1 Kruppel like factor 1 acts_upstream_of_or_within ISO MGI:1857557 (MGI:73364|PMID:7753194) RGD PMID:7753194 MGI:73364 NCBI chr19:23,250,627...23,253,802
Ensembl chr19:23,250,631...23,253,758
JBrowse link
G Kras KRAS proto-oncogene, GTPase IEP RGD PMID:1526114 RGD:11060153 NCBI chr 4:178,185,418...178,218,484 JBrowse link
G Lbp lipopolysaccharide binding protein IEP RGD PMID:20978830 RGD:9685195 NCBI chr 3:146,953,889...146,981,032
Ensembl chr 3:146,954,015...146,981,586
JBrowse link
G Lipc lipase C, hepatic type IEP RGD PMID:11004003 RGD:2307448 NCBI chr 8:71,509,633...71,635,663
Ensembl chr 8:71,509,635...71,635,464
JBrowse link
G Lsr lipolysis stimulated lipoprotein receptor involved_in ISS
ISO
GO_REF:0000024
(MGI:3052428|PMID:15265030)
HGNC
RGD
PMID:15265030 GO_REF:0000024 MGI:3052428 NCBI chr 1:86,185,769...86,201,952
Ensembl chr 1:86,186,431...86,201,952
JBrowse link
G Man2a1 mannosidase, alpha, class 2A, member 1 acts_upstream_of_or_within ISO MGI:2150656 (MGI:3652665|PMID:16754854) RGD PMID:16754854 MGI:3652665 NCBI chr 9:104,252,001...104,408,349
Ensembl chr 9:104,252,001...104,408,349
JBrowse link
G Med1 mediator complex subunit 1 acts_upstream_of_or_within ISO MGI:2684189 (MGI:2682174|PMID:14500757) RGD PMID:14500757 MGI:2682174 NCBI chr10:83,145,538...83,189,260
Ensembl chr10:83,145,568...83,189,299
JBrowse link
G Met MET proto-oncogene, receptor tyrosine kinase acts_upstream_of_or_within
involved_in
IEP
ISO
IBA
MGI:1857655 (MGI:76093|PMID:7651534)
PMID:21873635
RGD PMID:7651534 PMID:8506951 PMID:21873635 MGI:76093, RGD:2317549, RGD:13792537 NCBI chr 4:45,790,456...45,898,139
Ensembl chr 4:45,790,791...45,897,876
JBrowse link
G Mpst mercaptopyruvate sulfurtransferase IDA RGD PMID:6573924 RGD:9685558 NCBI chr 7:109,955,581...109,963,155
Ensembl chr 7:109,955,675...109,963,141
JBrowse link
G Mrtfb myocardin related transcription factor B acts_upstream_of_or_within ISO MGI:3587937 (MGI:3695837|PMID:17183527) RGD PMID:17183527 MGI:3695837 NCBI chr10:1,116,315...1,278,106
Ensembl chr10:1,116,310...1,277,897
JBrowse link
G Nat1 N-acetyltransferase 1 IEP RGD PMID:18799802 RGD:2303764 NCBI chr16:22,218,217...22,238,516
Ensembl chr16:22,208,194...22,238,520
JBrowse link
G Nf1 neurofibromin 1 involved_in
acts_upstream_of_or_within
IEA
ISO
ISS
GO_REF:0000107
MGI:1857444 (MGI:66069|PMID:7926784)
GO_REF:0000024
Ensembl
RGD
HGNC-UCL
PMID:7926784 GO_REF:0000024 GO_REF:0000107 MGI:66069 NCBI chr10:64,306,027...64,539,112
Ensembl chr10:64,306,301...64,536,658
JBrowse link
G Nodal nodal growth differentiation factor acts_upstream_of_or_within ISO MGI:2158732 (MGI:2155575|PMID:11311163) RGD PMID:11311163 MGI:2155575 NCBI chr20:29,368,436...29,376,837
Ensembl chr20:29,368,436...29,376,837
JBrowse link
G Notch1 notch receptor 1 acts_upstream_of_or_within ISO (MGI:3045664|PMID:15226394) RGD PMID:15226394 MGI:3045664 NCBI chr 3:9,277,955...9,323,531
Ensembl chr 3:9,278,086...9,323,531
JBrowse link
G Notch2 notch receptor 2 acts_upstream_of_or_within ISO MGI:3617328 (MGI:5616947|PMID:25446530) RGD PMID:25446530 MGI:5616947 NCBI chr 2:185,610,594...185,744,088
Ensembl chr 2:185,610,589...185,744,088
JBrowse link
G Nts neurotensin IEP RGD PMID:8342998 RGD:9743870 NCBI chr 7:37,564,944...37,574,350
Ensembl chr 7:37,564,533...37,574,423
JBrowse link
G Onecut1 one cut homeobox 1 acts_upstream_of_or_within ISO MGI:1891408 (MGI:3763866|PMID:17936262) RGD PMID:17936262 MGI:3763866 NCBI chr 8:75,599,432...75,633,598
Ensembl chr 8:75,599,740...75,627,277
JBrowse link
G Onecut2 one cut homeobox 2 acts_upstream_of_or_within ISO MGI:1196423 (MGI:3763866|PMID:17936262) RGD PMID:17936262 MGI:3763866 NCBI chr18:57,831,647...57,881,287
Ensembl chr18:57,832,111...57,879,629
JBrowse link
G Otc ornithine transcarbamylase IEP RGD PMID:8690412 RGD:4144072 NCBI chr  X:12,453,834...12,529,954
Ensembl chr  X:12,453,834...12,566,918
JBrowse link
G Pcsk9 proprotein convertase subtilisin/kexin type 9 involved_in
acts_upstream_of_or_within
IEP
ISO
PMID:12552133
(PMID:12552133)
RGD PMID:12552133 PMID:12552133 RGD:629554 NCBI chr 5:121,211,278...121,233,688
Ensembl chr 5:121,211,278...121,233,688
JBrowse link
G Pdx1 pancreatic and duodenal homeobox 1 acts_upstream_of_or_within ISO MGI:2388676 (MGI:4355651|PMID:19619492) RGD PMID:19619492 MGI:4355651 NCBI chr12:7,757,865...7,763,064
Ensembl chr12:7,757,865...7,763,064
JBrowse link
G Pik3ca phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit alpha acts_upstream_of_or_within ISO MGI:4845856 (MGI:5582991|PMID:24691033) RGD PMID:24691033 MGI:5582991 NCBI chr 2:115,175,275...115,249,034
Ensembl chr 2:115,174,984...115,249,032
JBrowse link
G Pkd1 polycystin 1, transient receptor potential channel interacting acts_upstream_of_or_within ISO MGI:1099818 (MGI:5441703|PMID:21685914) RGD PMID:21685914 MGI:5441703 NCBI chr10:13,573,779...13,621,138
Ensembl chr10:13,573,021...13,621,128
JBrowse link
G Pkd2 polycystin 2, transient receptor potential cation channel involved_in
acts_upstream_of_or_within
ISO (PMID:11891195)
MGI:97603 (MGI:5441703|PMID:21685914)
RGD PMID:11891195 PMID:21685914 MGI:5441703 NCBI chr14:5,237,135...5,280,455
Ensembl chr14:5,237,135...5,280,825
JBrowse link
G Pkm pyruvate kinase M1/2 IDA RGD PMID:7327170 RGD:2303137 NCBI chr 8:60,057,629...60,079,600
Ensembl chr 8:60,057,402...60,079,599
JBrowse link
G Prkcsh protein kinase C substrate 80K-H involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
MGI:2155302 (MGI:5441703|PMID:21685914)
RGD PMID:21685914 PMID:21873635 MGI:5441703, RGD:13792537 NCBI chr 8:20,534,787...20,546,493
Ensembl chr 8:20,534,880...20,546,492
JBrowse link
G Proc protein C, inactivator of coagulation factors Va and VIIIa acts_upstream_of_or_within IEP
ISO
MGI:2183063 (MGI:1306904|PMID:9788960) RGD PMID:9788960 PMID:7660357 MGI:1306904, RGD:1299299 NCBI chr18:23,764,367...23,774,816
Ensembl chr18:23,764,368...23,775,133
JBrowse link
G Pros1 protein S IEP RGD PMID:7660357 RGD:1299299 NCBI chr11:230,597...311,288
Ensembl chr11:230,696...311,286
JBrowse link
G Prox1 prospero homeobox 1 involved_in IEP
ISO
(PMID:11789987) RGD PMID:11789987 PMID:16770575 RGD:5133274 NCBI chr13:101,669,184...101,719,804
Ensembl chr13:101,669,184...101,711,183
JBrowse link
G Psmb9 proteasome 20S subunit beta 9 IEP RGD PMID:24707720 RGD:9854625 NCBI chr20:4,667,044...4,672,512
Ensembl chr20:4,666,046...4,672,512
JBrowse link
G Ptcd2 pentatricopeptide repeat domain 2 acts_upstream_of_or_within ISO MGI:3830811 (MGI:3829520|PMID:18729827) RGD PMID:18729827 MGI:3829520 NCBI chr 2:30,712,276...30,739,968
Ensembl chr 2:30,712,280...30,739,942
JBrowse link
G Ptn pleiotrophin IEP RGD PMID:12057922 RGD:727382 NCBI chr 4:65,293,731...65,375,572
Ensembl chr 4:65,293,734...65,375,456
JBrowse link
G Qdpr quinoid dihydropteridine reductase IEP RGD PMID:710385 RGD:5128606 NCBI chr14:65,670,251...65,683,853
Ensembl chr14:65,670,131...65,683,854
JBrowse link
G Rara retinoic acid receptor, alpha IEP RGD PMID:15388488 RGD:2314298 NCBI chr10:83,883,490...83,928,932
Ensembl chr10:83,893,384...83,928,142
JBrowse link
G Rb1cc1 RB1-inducible coiled-coil 1 acts_upstream_of_or_within ISO MGI:3690329 (MGI:3689241|PMID:17015619) RGD PMID:17015619 MGI:3689241 NCBI chr 5:13,161,648...13,225,560
Ensembl chr 5:13,161,648...13,225,560
JBrowse link
G Rela RELA proto-oncogene, NF-kB subunit involved_in ISO (MGI:76008|PMID:7603567) RGD PMID:7603567 MGI:76008 NCBI chr 1:202,925,001...202,935,484
Ensembl chr 1:202,924,945...202,935,484
JBrowse link
G Rgn regucalcin IEP RGD PMID:9546611 PMID:8794449 RGD:9590173, RGD:9590212 NCBI chr  X:1,619,030...1,634,456
Ensembl chr  X:1,619,032...1,634,450
JBrowse link
G Rhbdd3 rhomboid domain containing 3 acts_upstream_of_or_within ISO MGI:5516031 (MGI:5492204|PMID:23610400) RGD PMID:23610400 MGI:5492204 NCBI chr14:79,994,111...80,000,294
Ensembl chr14:79,994,158...80,000,175
JBrowse link
G Rpgrip1l Rpgrip1-like acts_upstream_of_or_within ISO MGI:3716208 (MGI:3716248|PMID:17558409) RGD PMID:17558409 MGI:3716248 NCBI chr19:15,692,189...15,785,083
Ensembl chr19:15,692,150...15,785,083
JBrowse link
G Runx1 RUNX family transcription factor 1 acts_upstream_of_or_within ISO MGI:3043614 (MGI:3759935|PMID:16174759) RGD PMID:16174759 MGI:3759935 NCBI chr11:31,839,880...32,074,427
Ensembl chr11:31,843,764...32,074,542
JBrowse link
G Rxra retinoid X receptor alpha IEP RGD PMID:14729401 RGD:1643117 NCBI chr 3:10,989,832...11,076,366
Ensembl chr 3:10,989,832...11,073,712
JBrowse link
G Sec63 SEC63 homolog, protein translocation regulator acts_upstream_of_or_within ISO MGI:107877|MGI:5442171 (MGI:5441703|PMID:21685914) RGD PMID:21685914 MGI:5441703 NCBI chr20:46,245,101...46,314,055
Ensembl chr20:46,245,101...46,314,055
JBrowse link
G Slc25a4 solute carrier family 25 member 4 IEP RGD PMID:9468308 RGD:9681468 NCBI chr16:46,072,935...46,076,730
Ensembl chr16:46,072,939...46,076,733
JBrowse link
G Slco1b2 solute carrier organic anion transporter family member 1B2 IEP RGD PMID:15288467 RGD:2303131 NCBI chr 4:174,551,463...174,619,988
Ensembl chr 4:174,551,480...174,619,981
JBrowse link
G Slco2b1 solute carrier organic anion transporter family, member 2b1 IEP RGD PMID:15345472 RGD:2316987 NCBI chr 1:153,959,288...154,007,294
Ensembl chr 1:153,959,293...154,007,353
JBrowse link
G Smad3 SMAD family member 3 acts_upstream_of_or_within ISO MGI:108051 (MGI:3618021|PMID:15183723) RGD PMID:15183723 MGI:3618021 NCBI chr 8:64,126,829...64,236,960
Ensembl chr 8:64,110,039...64,236,960
JBrowse link
G Smarca4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 acts_upstream_of_or_within ISO MGI:2386105|MGI:3611933 (MGI:3610843|PMID:16287714) RGD PMID:16287714 MGI:3610843 NCBI chr 8:20,167,717...20,258,975
Ensembl chr 8:20,167,717...20,258,975
JBrowse link
G Sod2 superoxide dismutase 2 acts_upstream_of_or_within ISO MGI:2177602|MGI:2447406 (MGI:3718142|PMID:17367743) RGD PMID:17367743 MGI:3718142 NCBI chr 1:47,638,318...47,645,163
Ensembl chr 1:47,636,528...47,645,189
JBrowse link
G Sp1 Sp1 transcription factor acts_upstream_of_or_within ISO MGI:1277166 (MGI:3717030|PMID:17584888) RGD PMID:17584888 MGI:3717030 NCBI chr 7:133,541,302...133,571,961
Ensembl chr 7:133,541,491...133,571,961
JBrowse link
G Sp3 Sp3 transcription factor acts_upstream_of_or_within ISO MGI:98372 (MGI:3717030|PMID:17584888) RGD PMID:17584888 MGI:3717030 NCBI chr 3:57,811,855...57,857,150
Ensembl chr 3:57,812,075...57,860,342
JBrowse link
G Srd5a1 steroid 5 alpha-reductase 1 IEP RGD PMID:8770891 RGD:4892048 NCBI chr 1:33,686,069...33,720,468
Ensembl chr 1:33,686,391...33,720,461
JBrowse link
G Srsf5 serine and arginine rich splicing factor 5 IEP RGD PMID:9199345 RGD:11039429 NCBI chr 6:100,605,165...100,610,192
Ensembl chr 6:100,605,456...100,610,177
JBrowse link
G Stat5b signal transducer and activator of transcription 5B IDA RGD PMID:17565389 RGD:2291935 NCBI chr10:85,704,841...85,775,856
Ensembl chr10:85,705,670...85,775,668
JBrowse link
G Taf10 TATA-box binding protein associated factor 10 acts_upstream_of_or_within ISO MGI:2176946|MGI:3606185 (MGI:3806427|PMID:18722179) RGD PMID:18722179 MGI:3806427 NCBI chr 1:160,095,108...160,096,401
Ensembl chr 1:160,095,108...160,096,376
JBrowse link
G Tgfbr3 transforming growth factor beta receptor 3 involved_in ISO (MGI:2663364|PMID:12773577) RGD PMID:12773577 MGI:2663364 NCBI chr14:2,489,397...2,665,383
Ensembl chr14:2,489,397...2,663,341
JBrowse link
G Thra thyroid hormone receptor alpha IEP RGD PMID:17496154 RGD:2314319 NCBI chr10:83,701,885...83,729,408
Ensembl chr10:83,700,755...83,729,936
JBrowse link
G Thra_v1 thyroid hormone receptor alpha, variant 1 IEP RGD PMID:17496154 RGD:2314319
G Thra_v2 thyroid hormone receptor alpha, variant 2 IEP RGD PMID:17496154 RGD:2314319
G Tk1 thymidine kinase 1 IEP RGD PMID:995499 RGD:2317236 NCBI chr10:103,034,755...103,046,125
Ensembl chr10:103,031,521...103,046,920
JBrowse link
G Ugt1a1 UDP glucuronosyltransferase family 1 member A1 IEP RGD PMID:16310220 PMID:18938141 RGD:2315453, RGD:2317023 NCBI chr 9:88,801,344...88,808,465
Ensembl chr 9:88,713,184...88,808,465
JBrowse link
G Ugt1a2 UDP glucuronosyltransferase 1 family, polypeptide A2 IEP RGD PMID:18938141 RGD:2317023 NCBI chr 9:88,791,216...88,808,465
Ensembl chr 9:88,713,184...88,808,465
JBrowse link
G Ugt1a5 UDP glucuronosyltransferase family 1 member A5 IEP RGD PMID:18938141 RGD:2317023 NCBI chr 9:88,762,250...88,808,465
Ensembl chr 9:88,713,184...88,808,465
JBrowse link
G Ugt1a6 UDP glucuronosyltransferase family 1 member A6 IEP RGD PMID:18938141 RGD:2317023 NCBI chr 9:88,747,229...88,808,465
Ensembl chr 9:88,713,184...88,808,465
JBrowse link
G Ugt1a7c UDP glucuronosyltransferase 1 family, polypeptide A7C IEP RGD PMID:18938141 RGD:2317023 NCBI chr 9:88,739,577...88,808,465
Ensembl chr 9:88,713,184...88,808,465
JBrowse link
G Upb1 beta-ureidopropionase 1 IDA RGD PMID:6870258 RGD:2317093 NCBI chr20:13,217,252...13,243,590
Ensembl chr20:13,217,258...13,243,590
JBrowse link
G Upf2 UPF2, regulator of nonsense mediated mRNA decay acts_upstream_of_or_within ISO MGI:3790198 (MGI:4821037|PMID:20657840) RGD PMID:20657840 MGI:4821037 NCBI chr17:72,224,575...72,335,896
Ensembl chr17:72,225,316...72,335,855
JBrowse link
G Urod uroporphyrinogen decarboxylase IEP RGD PMID:6219675 RGD:4145103 NCBI chr 5:130,464,695...130,468,783
Ensembl chr 5:130,455,217...130,468,808
JBrowse link
G Vwf von Willebrand factor acts_upstream_of_or_within ISO MGI:1857656 (MGI:70957|PMID:7854452) RGD PMID:7854452 MGI:70957 NCBI chr 4:158,360,152...158,491,539
Ensembl chr 4:158,360,152...158,491,539
JBrowse link
G Wnt4 Wnt family member 4 involved_in IEA
ISO
GO_REF:0000107
(PMID:15312687)
Ensembl
RGD
PMID:15312687 GO_REF:0000107 NCBI chr 5:149,513,573...149,535,415
Ensembl chr 5:149,514,018...149,532,859
JBrowse link
G Xbp1 X-box binding protein 1 involved_in ISS
ISO
GO_REF:0000024
(MGI:1352298|PMID:10652269)
UniProt
RGD
PMID:10652269 GO_REF:0000024 MGI:1352298 NCBI chr14:80,390,629...80,395,713
Ensembl chr14:80,390,643...80,395,693
JBrowse link
G Zmpste24 zinc metallopeptidase STE24 acts_upstream_of_or_within ISO MGI:2180033 (MGI:5609934|PMID:23117660) RGD PMID:23117660 MGI:5609934 NCBI chr 5:134,627,218...134,660,360
Ensembl chr 5:134,627,229...134,660,110
JBrowse link
liver morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cul3 cullin 3 acts_upstream_of_or_within ISO MGI:3714267 (MGI:3713609|PMID:17339333) RGD PMID:17339333 MGI:3713609 NCBI chr 9:81,592,641...81,670,428
Ensembl chr 9:81,592,641...81,670,462
JBrowse link
G Notch2 notch receptor 2 acts_upstream_of_or_within ISO MGI:3617328 (MGI:5616947|PMID:25446530) RGD PMID:25446530 MGI:5616947 NCBI chr 2:185,610,594...185,744,088
Ensembl chr 2:185,610,589...185,744,088
JBrowse link
G Tet2 tet methylcytosine dioxygenase 2 acts_upstream_of_or_within ISO MGI:5301343 (MGI:5298314|PMID:21803851) RGD PMID:21803851 MGI:5298314 NCBI chr 2:221,988,645...222,072,813
Ensembl chr 2:221,988,645...222,072,534
JBrowse link
liver regeneration term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adrb2 adrenoceptor beta 2 IEP RGD PMID:8855951 RGD:8548508 NCBI chr18:55,642,459...55,644,501
Ensembl chr18:55,502,903...55,644,512
JBrowse link
G Afp alpha-fetoprotein IEP RGD PMID:2460696 RGD:126848734 NCBI chr14:17,573,412...17,591,476
Ensembl chr14:17,573,412...17,591,480
JBrowse link
G Alas2 5'-aminolevulinate synthase 2 IEP RGD PMID:6895999 RGD:11035238 NCBI chr  X:19,463,146...19,486,526
Ensembl chr  X:19,463,171...19,486,519
JBrowse link
G Angpt1 angiopoietin 1 IEP RGD PMID:11549276 RGD:704403 NCBI chr 7:73,528,345...73,783,953
Ensembl chr 7:73,531,486...73,784,067
JBrowse link
G Atp2a3 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 3 IEP RGD PMID:11032760 RGD:13782137 NCBI chr10:57,581,742...57,612,758
Ensembl chr10:57,582,128...57,612,748
JBrowse link
G Aurka aurora kinase A acts_upstream_of_or_within ISO (PMID:19435814) RGD PMID:19435814 NCBI chr 3:161,128,309...161,144,524
Ensembl chr 3:161,128,313...161,144,390
JBrowse link
G Bcl2 BCL2, apoptosis regulator IEP RGD PMID:21503946 RGD:11531107 NCBI chr13:22,689,783...22,853,920 JBrowse link
G Ccnd1 cyclin D1 acts_upstream_of_or_within ISO (MGI:5515698|PMID:23740243) RGD PMID:23740243 MGI:5515698 NCBI chr 1:200,089,002...200,098,524
Ensembl chr 1:200,089,002...200,098,602
JBrowse link
G Cebpb CCAAT/enhancer binding protein beta involved_in ISS
ISO
GO_REF:0000024
(MGI:1277818|PMID:9727068)
UniProt
RGD
PMID:9727068 GO_REF:0000024 MGI:1277818 NCBI chr 3:156,398,035...156,399,466
Ensembl chr 3:156,397,052...156,399,473
JBrowse link
G Cftr CF transmembrane conductance regulator IEP RGD PMID:1378998 RGD:11567227 NCBI chr 4:46,561,269...46,728,759
Ensembl chr 4:46,560,885...46,728,756
JBrowse link
G Cldn1 claudin 1 IEP RGD PMID:15826721 RGD:11344894 NCBI chr11:74,421,569...74,436,728
Ensembl chr11:74,421,569...74,436,724
JBrowse link
G Cpb2 carboxypeptidase B2 IEP RGD PMID:19386599 RGD:7243112 NCBI chr15:50,557,722...50,606,569
Ensembl chr15:50,557,717...50,606,556
JBrowse link
G Cpt1a carnitine palmitoyltransferase 1A IEP RGD PMID:31953200 RGD:25823179 NCBI chr 1:200,564,634...200,627,059
Ensembl chr 1:200,565,613...200,627,055
JBrowse link
G Csnk2a1 casein kinase 2 alpha 1 IEP RGD PMID:8573159 RGD:11565141 NCBI chr 3:140,709,984...140,756,757
Ensembl chr 3:140,709,991...140,756,696
JBrowse link
G Csnk2a2 casein kinase 2 alpha 2 IEP RGD PMID:8573159 RGD:11565141 NCBI chr19:9,556,443...9,596,080
Ensembl chr19:9,556,260...9,596,080
JBrowse link
G Csnk2b casein kinase 2 beta IEP RGD PMID:8573159 RGD:11565141 NCBI chr20:3,700,363...3,705,331
Ensembl chr20:3,698,733...3,707,133
JBrowse link
G Egfr epidermal growth factor receptor IEP
IMP
RGD PMID:2401457 PMID:20395437 RGD:10395295, RGD:38599218 NCBI chr14:91,176,931...91,349,722
Ensembl chr14:91,177,067...91,344,382
JBrowse link
G Ezh1 enhancer of zeste 1 polycomb repressive complex 2 subunit acts_upstream_of_or_within ISO MGI:107940 (MGI:5637451|PMID:25477280) RGD PMID:25477280 MGI:5637451 NCBI chr10:86,126,023...86,162,001
Ensembl chr10:86,126,015...86,161,921
JBrowse link
G Ezh2 enhancer of zeste 2 polycomb repressive complex 2 subunit acts_upstream_of_or_within ISO MGI:1097695 (MGI:5637451|PMID:25477280) RGD PMID:25477280 MGI:5637451 NCBI chr 4:76,624,399...76,687,362
Ensembl chr 4:76,624,399...76,687,362
JBrowse link
G Fas Fas cell surface death receptor IEP RGD PMID:10632538 RGD:8662889 NCBI chr 1:231,798,963...231,832,591
Ensembl chr 1:231,798,960...231,832,591
JBrowse link
G Fga fibrinogen alpha chain IEP RGD PMID:3817019 RGD:728788 NCBI chr 2:168,365,364...168,381,533
Ensembl chr 2:168,374,120...168,381,528
JBrowse link
G Flt1 Fms related receptor tyrosine kinase 1 IEP RGD PMID:16162160 RGD:10402121 NCBI chr12:7,296,899...7,468,626
Ensembl chr12:7,297,292...7,468,626
JBrowse link
G Gfer growth factor, augmenter of liver regeneration IMP RGD PMID:24880092 RGD:9685725 NCBI chr10:13,718,489...13,721,782
Ensembl chr10:13,718,489...13,720,869
JBrowse link
G Ggt1 gamma-glutamyltransferase 1 IEP RGD PMID:10934156 RGD:14701049 NCBI chr20:13,074,695...13,104,095
Ensembl chr20:13,074,700...13,108,442
JBrowse link
G Gli1 GLI family zinc finger 1 acts_upstream_of_or_within IEP
ISO
MGI:1857797 (MGI:5515698|PMID:23740243) RGD PMID:23740243 PMID:22790641 PMID:22024090 MGI:5515698, RGD:12832760, RGD:12911223 NCBI chr 7:63,156,926...63,169,579
Ensembl chr 7:63,156,926...63,169,251
JBrowse link
G Gli3 GLI family zinc finger 3 IEP RGD PMID:22024090 RGD:12911223 NCBI chr17:49,438,567...49,709,712
Ensembl chr17:49,438,567...49,709,712
JBrowse link
G Hamp hepcidin antimicrobial peptide IEP RGD PMID:22364558 RGD:8694419 NCBI chr 1:86,170,926...86,172,865
Ensembl chr 1:86,170,901...86,172,891
JBrowse link
G Hfe homeostatic iron regulator IEP RGD PMID:22364558 RGD:8694419 NCBI chr17:41,413,451...41,421,502
Ensembl chr17:41,413,451...41,421,502
JBrowse link
G Hmox1 heme oxygenase 1 IMP RGD PMID:24815159 RGD:10755743 NCBI chr19:13,466,287...13,474,082
Ensembl chr19:13,467,244...13,474,079
JBrowse link
G Hsd3b7 hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7 IEP RGD PMID:16081591 RGD:1599972 NCBI chr 1:182,411,836...182,415,447
Ensembl chr 1:182,412,151...182,415,442
JBrowse link
G Ihh Indian hedgehog signaling molecule IEP RGD PMID:22024090 RGD:12911223 NCBI chr 9:76,504,315...76,510,532
Ensembl chr 9:76,504,315...76,510,532
JBrowse link
G Il10 interleukin 10 IEP RGD PMID:11813605 RGD:11049526 NCBI chr13:42,472,625...42,477,308
Ensembl chr13:42,472,839...42,477,313
JBrowse link
G Il18 interleukin 18 IEP RGD PMID:24412291 RGD:14696652 NCBI chr 8:50,904,630...50,932,887
Ensembl chr 8:50,906,960...50,932,887
JBrowse link
G Il6 interleukin 6 involved_in ISS
ISO
GO_REF:0000024
(MGI:84432|PMID:8910279)
UniProt
RGD
PMID:8910279 GO_REF:0000024 MGI:84432 NCBI chr 4:5,214,602...5,219,178
Ensembl chr 4:5,213,394...5,219,178
JBrowse link
G Insr insulin receptor IEP RGD PMID:23633480 RGD:9685423 NCBI chr12:1,193,193...1,330,976
Ensembl chr12:1,197,100...1,330,883
JBrowse link
G Itpr1 inositol 1,4,5-trisphosphate receptor, type 1 IMP RGD PMID:24814243 RGD:13793384 NCBI chr 4:141,187,377...141,554,240
Ensembl chr 4:141,187,418...141,510,491
JBrowse link
G Klkb1 kallikrein B1 IEP RGD PMID:9869390 RGD:7297052 NCBI chr16:46,958,634...46,982,054
Ensembl chr16:46,958,707...46,982,053
JBrowse link
G Myc MYC proto-oncogene, bHLH transcription factor IEP RGD PMID:3335218 RGD:10059623 NCBI chr 7:93,593,705...93,598,633
Ensembl chr 7:93,593,705...93,598,630
JBrowse link
G Ncl nucleolin IEP RGD PMID:7490256 RGD:9686389 NCBI chr 9:86,999,588...87,008,112
Ensembl chr 9:86,998,019...87,008,136
JBrowse link
G Nfkbia NFKB inhibitor alpha IEP RGD PMID:24446557 RGD:150429839 NCBI chr 6:72,858,713...72,861,941
Ensembl chr 6:72,858,712...72,861,941
JBrowse link
G Npm1 nucleophosmin 1 IEP RGD PMID:14635188 RGD:11534994 NCBI chr10:17,741,512...17,751,626
Ensembl chr10:17,739,941...17,751,645
JBrowse link
G Nr1h4 nuclear receptor subfamily 1, group H, member 4 IEP RGD PMID:29138817 RGD:15042871 NCBI chr 7:23,846,122...23,942,085
Ensembl chr 7:23,846,122...23,942,047
JBrowse link
G Pcna proliferating cell nuclear antigen IEP RGD PMID:7906221 RGD:10448980 NCBI chr 3:119,499,039...119,502,911
Ensembl chr 3:119,498,810...119,502,995
JBrowse link
G Pnpt1 polyribonucleotide nucleotidyltransferase 1 IEP RGD PMID:191106 RGD:11554175 NCBI chr14:102,877,553...102,908,696
Ensembl chr14:102,877,553...102,908,696
JBrowse link
G Pou2f1 POU class 2 homeobox 1 IEP RGD PMID:1841628 RGD:9743904 NCBI chr13:78,120,617...78,263,306
Ensembl chr13:78,130,685...78,263,363
JBrowse link
G Prmt1 protein arginine methyltransferase 1 IEP RGD PMID:15837430 RGD:2299961 NCBI chr 1:95,458,853...95,468,176
Ensembl chr 1:95,458,850...95,468,345
JBrowse link
G Prmt5 protein arginine methyltransferase 5 IEP RGD PMID:15837430 RGD:2299961 NCBI chr15:27,968,893...27,978,291
Ensembl chr15:27,968,910...27,978,296
JBrowse link
G Ptch1 patched 1 IEP RGD PMID:22024090 RGD:12911223 NCBI chr17:1,542,705...1,607,730
Ensembl chr17:1,542,877...1,607,333
JBrowse link
G Ptpn3 protein tyrosine phosphatase, non-receptor type 3 IEP RGD PMID:7591957 RGD:1599982 NCBI chr 5:71,908,520...72,027,323
Ensembl chr 5:71,911,135...72,065,443
JBrowse link
G Rap1a RAP1A, member of RAS oncogene family IEP RGD PMID:9015365 RGD:10003155 NCBI chr 2:193,208,631...193,286,513
Ensembl chr 2:193,208,635...193,286,501
JBrowse link
G Rapgef3 Rap guanine nucleotide exchange factor 3 IEP RGD PMID:22227930 RGD:9850085 NCBI chr 7:128,875,772...128,898,203
Ensembl chr 7:128,875,773...128,898,521
JBrowse link
G Reg1a regenerating family member 1 alpha IEP RGD PMID:19284990 RGD:10044030 NCBI chr 4:110,892,451...110,895,115
Ensembl chr 4:110,892,453...110,895,570
JBrowse link
G Rgn regucalcin IEP RGD PMID:7759556 RGD:9590197 NCBI chr  X:1,619,030...1,634,456
Ensembl chr  X:1,619,032...1,634,450
JBrowse link
G Rpl10 ribosomal protein L10 IEP RGD PMID:6121318 RGD:11038709 NCBI chr  X:152,054,547...152,056,757
Ensembl chr  X:152,054,452...152,056,761
JBrowse link
G Rpl13 ribosomal protein L13 IEP RGD PMID:6121318 RGD:11038709 NCBI chr19:51,153,990...51,156,541
Ensembl chr19:51,153,924...51,163,014
JBrowse link
G Rpl18 ribosomal protein L18 IEP RGD PMID:6121318 RGD:11038709 NCBI chr 1:96,188,811...96,191,452
Ensembl chr 1:96,188,112...96,191,452
JBrowse link
G Rpl19 ribosomal protein L19 IEP RGD PMID:6121318 RGD:11038709 NCBI chr10:83,022,503...83,026,030
Ensembl chr10:83,019,257...83,052,112
JBrowse link
G Rpl30 ribosomal protein L30 IEP RGD PMID:6121318 RGD:11038709 NCBI chr 7:65,648,470...65,651,363
Ensembl chr10:36,831,500...36,831,990
Ensembl chr 7:36,831,500...36,831,990
JBrowse link
G Rpl32 ribosomal protein L32 IEP RGD PMID:6121318 RGD:11038709 NCBI chr 4:148,864,048...148,867,612
Ensembl chr 4:148,864,044...148,867,612
JBrowse link
G Rpl7 ribosomal protein L7 IEP RGD PMID:6121318 RGD:11038709 NCBI chr 5:3,217,184...3,220,192 JBrowse link
G Rps15 ribosomal protein S15 IEP RGD PMID:2829897 RGD:11040696 NCBI chr 7:9,416,003...9,417,442
Ensembl chr 7:9,416,004...9,417,450
JBrowse link
G Rps16 ribosomal protein S16 IEP RGD PMID:6121318 RGD:11038709 NCBI chr 1:83,643,066...83,646,056
Ensembl chr 1:83,643,130...83,646,206
JBrowse link
G Rps24 ribosomal protein S24 IEP RGD PMID:7612009 RGD:11041663 NCBI chr16:89,538...94,267
Ensembl chr16:89,604...94,279
JBrowse link
G Serpina10 serpin family A member 10 IEP RGD PMID:8670294 RGD:729731 NCBI chr 6:122,756,106...122,764,544
Ensembl chr 6:122,756,108...122,764,544
JBrowse link
G Shh sonic hedgehog signaling molecule IEP RGD PMID:22790641 RGD:12832760 NCBI chr 4:6,954,017...6,963,170
Ensembl chr 4:6,954,017...6,963,170
JBrowse link
G Srsf1 serine and arginine rich splicing factor 1 IEP RGD PMID:23633480 RGD:9685423 NCBI chr10:72,838,926...72,859,066
Ensembl chr10:72,839,274...72,845,336
JBrowse link
G Srsf5 serine and arginine rich splicing factor 5 IEP RGD PMID:7686911 RGD:729792 NCBI chr 6:100,605,165...100,610,192
Ensembl chr 6:100,605,456...100,610,177
JBrowse link
G Sulf2 sulfatase 2 acts_upstream_of_or_within ISO MGI:3587954 (MGI:5515698|PMID:23740243) RGD PMID:23740243 MGI:5515698 NCBI chr 3:154,822,079...154,904,566
Ensembl chr 3:154,822,085...154,904,415
JBrowse link
G Tgfb1 transforming growth factor, beta 1 IEP RGD PMID:25862490 RGD:11073669 NCBI chr 1:81,196,532...81,212,848
Ensembl chr 1:81,196,532...81,212,847
JBrowse link
G Tnf tumor necrosis factor IEP RGD PMID:9178702 RGD:14995465 NCBI chr20:3,622,011...3,624,629
Ensembl chr20:3,622,011...3,624,629
JBrowse link
G Tyms thymidylate synthetase IEP RGD PMID:2707640 RGD:2317422 NCBI chr 9:113,313,454...113,329,551
Ensembl chr 9:113,313,452...113,329,536
JBrowse link
G Ucp2 uncoupling protein 2 IEP RGD PMID:19104935 RGD:7204431 NCBI chr 1:154,839,242...154,845,612
Ensembl chr 1:154,839,209...154,845,611
JBrowse link
G Vtn vitronectin IDA RGD PMID:10988248 RGD:10003090 NCBI chr10:63,394,732...63,397,812
Ensembl chr10:63,394,719...63,397,810
JBrowse link
G Vwf von Willebrand factor IEP RGD PMID:12217600 RGD:727737 NCBI chr 4:158,360,152...158,491,539
Ensembl chr 4:158,360,152...158,491,539
JBrowse link
G Wdr35 WD repeat domain 35 IEP RGD PMID:18472094 RGD:11553927 NCBI chr 6:31,771,315...31,831,450
Ensembl chr 6:31,771,360...31,831,029
JBrowse link
negative regulation of hepatocyte differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Frzb frizzled-related protein acts_upstream_of_or_within ISO (MGI:4356222|PMID:19562671) RGD PMID:19562671 MGI:4356222 NCBI chr 3:65,332,274...65,365,208
Ensembl chr 3:65,332,277...65,365,208
JBrowse link
negative regulation of hepatocyte proliferation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdkn2a cyclin-dependent kinase inhibitor 2A IMP RGD PMID:24190239 RGD:11252157 NCBI chr 5:103,984,949...103,992,143
Ensembl chr 5:103,984,949...104,003,149
JBrowse link
G Ceacam1 CEA cell adhesion molecule 1 involved_in IMP
ISO
ISS
PMID:15467833
(MGI:3057041|PMID:15467833)
GO_REF:0000024
RGD
UniProt
PMID:15467833 PMID:15467833 GO_REF:0000024 MGI:3057041, RGD:11059592 NCBI chr 1:81,043,595...81,060,050
Ensembl chr 1:81,043,595...81,059,992
JBrowse link
G Cpb2 carboxypeptidase B2 IMP RGD PMID:19386599 RGD:7243112 NCBI chr15:50,557,722...50,606,569
Ensembl chr15:50,557,717...50,606,556
JBrowse link
G Lims1 LIM zinc finger domain containing 1 acts_upstream_of_or_within ISO MGI:2385067 (MGI:5559100|PMID:24058607) RGD PMID:24058607 MGI:5559100 NCBI chr20:26,309,833...26,418,511
Ensembl chr20:26,309,895...26,418,500
JBrowse link
G Lims2 LIM zinc finger domain containing 2 acts_upstream_of_or_within ISO MGI:1195263 (MGI:5559100|PMID:24058607) RGD PMID:24058607 MGI:5559100 NCBI chr18:23,553,813...23,592,137
Ensembl chr18:23,553,937...23,592,137
JBrowse link
G Smo smoothened, frizzled class receptor IMP RGD PMID:22994359 RGD:150521663 NCBI chr 4:58,344,101...58,372,828
Ensembl chr 4:58,343,529...58,373,829
JBrowse link
positive regulation of hepatocyte differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp4 bone morphogenetic protein 4 IMP RGD PMID:19229878 RGD:8885195 NCBI chr15:19,618,538...19,633,494
Ensembl chr15:19,618,542...19,623,306
JBrowse link
G Foxa3 forkhead box A3 IMP RGD PMID:9878541 RGD:2315086 NCBI chr 1:78,662,067...78,672,321
Ensembl chr 1:78,662,431...78,672,155
JBrowse link
G Mesp1 mesoderm posterior bHLH transcription factor 1 involved_in ISO (MGI:4441249|PMID:18593560) RGD PMID:18593560 MGI:4441249 NCBI chr 1:133,738,357...133,739,875
Ensembl chr 1:133,738,357...133,739,875
JBrowse link
positive regulation of hepatocyte proliferation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cflar CASP8 and FADD-like apoptosis regulator IMP RGD PMID:16033771 RGD:11341689 NCBI chr 9:60,185,338...60,236,173
Ensembl chr 9:60,185,452...60,237,034
JBrowse link
G Fgf1 fibroblast growth factor 1 involved_in IDA PMID:16756958 UniProt PMID:16756958 RGD:10047366 NCBI chr18:30,686,555...30,772,667
Ensembl chr18:30,686,581...30,772,357
JBrowse link
G Fgf18 fibroblast growth factor 18 involved_in IDA PMID:16756958 UniProt PMID:16756958 RGD:10047366 NCBI chr10:17,706,011...17,737,702
Ensembl chr10:17,706,174...17,736,818
JBrowse link
G Hpn hepsin involved_in ISO
ISS
(PMID:15614436)
GO_REF:0000024
RGD
UniProt
PMID:15614436 GO_REF:0000024 NCBI chr 1:86,337,085...86,352,785
Ensembl chr 1:86,337,087...86,352,811
JBrowse link
G Il18 interleukin 18 IDA RGD PMID:24412291 RGD:14696652 NCBI chr 8:50,904,630...50,932,887
Ensembl chr 8:50,906,960...50,932,887
JBrowse link
G Itpr1 inositol 1,4,5-trisphosphate receptor, type 1 IMP RGD PMID:24814243 RGD:13793384 NCBI chr 4:141,187,377...141,554,240
Ensembl chr 4:141,187,418...141,510,491
JBrowse link
G Mdk midkine involved_in ISS
ISO
GO_REF:0000024
(MGI:3606557|PMID:15482347)
UniProt
RGD
PMID:15482347 GO_REF:0000024 MGI:3606557 NCBI chr 3:77,901,156...77,903,997
Ensembl chr 3:77,901,158...77,903,130
JBrowse link
G Med1 mediator complex subunit 1 acts_upstream_of_or_within ISO MGI:2176946|MGI:3511276 (MGI:3719773|PMID:17438330) RGD PMID:17438330 MGI:3719773 NCBI chr10:83,145,538...83,189,260
Ensembl chr10:83,145,568...83,189,299
JBrowse link
G Ptn pleiotrophin involved_in IDA
ISO
(MGI:3606557|PMID:15482347) RGD PMID:15482347 PMID:16226713 MGI:3606557, RGD:9834996 NCBI chr 4:65,293,731...65,375,572
Ensembl chr 4:65,293,734...65,375,456
JBrowse link
G Rtn4 reticulon 4 involved_in ISS
ISO
GO_REF:0000024
(MGI:6282933|PMID:23299899)
UniProt
RGD
PMID:23299899 GO_REF:0000024 MGI:6282933 NCBI chr14:103,450,074...103,497,687
Ensembl chr14:103,449,930...103,497,686
JBrowse link
G Tnf tumor necrosis factor IMP
IDA
with PCB 126 or TCDD RGD PMID:9111198 PMID:17557910 RGD:14995469, RGD:14995481 NCBI chr20:3,622,011...3,624,629
Ensembl chr20:3,622,011...3,624,629
JBrowse link
G Tnfaip3 TNF alpha induced protein 3 involved_in ISO (MGI:4943408|PMID:15962316) RGD PMID:15962316 MGI:4943408 NCBI chr 1:13,709,211...13,724,291
Ensembl chr 1:13,709,206...13,725,282
JBrowse link
G Wnt3a Wnt family member 3A acts_upstream_of_or_within ISO (MGI:5515698|PMID:23740243) RGD PMID:23740243 MGI:5515698 NCBI chr10:44,034,174...44,078,463
Ensembl chr10:44,034,194...44,078,324
JBrowse link
G Xbp1 X-box binding protein 1 involved_in ISS
ISO
GO_REF:0000024
(MGI:1352298|PMID:10652269)
UniProt
RGD
PMID:10652269 GO_REF:0000024 MGI:1352298 NCBI chr14:80,390,629...80,395,713
Ensembl chr14:80,390,643...80,395,693
JBrowse link
regulation of hepatocyte proliferation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gli1 GLI family zinc finger 1 acts_upstream_of_or_within ISO (MGI:5515698|PMID:23740243) RGD PMID:23740243 MGI:5515698 NCBI chr 7:63,156,926...63,169,579
Ensembl chr 7:63,156,926...63,169,251
JBrowse link
G Ifng interferon gamma IDA RGD PMID:15799032 RGD:8142374 NCBI chr 7:53,903,339...53,907,375
Ensembl chr 7:53,903,337...53,907,375
JBrowse link
G Plau plasminogen activator, urokinase IMP RGD PMID:17587687 RGD:6484147 NCBI chr15:3,456,230...3,462,732
Ensembl chr15:3,456,232...3,462,775
JBrowse link
G Sulf2 sulfatase 2 acts_upstream_of_or_within ISO MGI:3587954 (MGI:5515698|PMID:23740243) RGD PMID:23740243 MGI:5515698 NCBI chr 3:154,822,079...154,904,566
Ensembl chr 3:154,822,085...154,904,415
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19512
    multicellular organismal process 9052
      multicellular organism development 5773
        system development 5413
          hepaticobiliary system development 267
            common bile duct development + 8
            gall bladder development 3
            liver development + 264
Path 2
Term Annotations click to browse term
  biological_process 19512
    developmental process 6931
      anatomical structure development 6346
        multicellular organism development 5773
          system development 5413
            hepaticobiliary system development 267
              common bile duct development + 8
              gall bladder development 3
              liver development + 264
paths to the root