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ONTOLOGY REPORT - ANNOTATIONS


Term:pattern specification involved in kidney development
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Accession:GO:0061004 term browser browse the term
Definition:Any developmental process that results in the creation of defined areas or spaces within the kidney to which cells respond and eventually are instructed to differentiate.
Synonyms:exact_synonym: kidney pattern specification
 related_synonym: kidney pattern formation;   pattern formation involved in kidney development



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metanephric capsule specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxd1 forkhead box D1 involved_in ISS
ISO
IEA
GO_REF:0000024
(MGI:3525902|PMID:15634693)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:15634693 GO_REF:0000024 GO_REF:0000107 MGI:3525902 NCBI chr 2:29,702,558...29,704,978
Ensembl chr 2:29,702,558...29,704,978
JBrowse link
pattern specification involved in metanephros development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxd1 forkhead box D1 involved_in ISO (MGI:3525902|PMID:15634693) RGD PMID:15634693 MGI:3525902 NCBI chr 2:29,702,558...29,704,978
Ensembl chr 2:29,702,558...29,704,978
JBrowse link
G Osr1 odd-skipped related transcription factor 1 involved_in ISS
ISO
GO_REF:0000024
(MGI:3826342|PMID:18835385)
UniProt
RGD
PMID:18835385 GO_REF:0000024 MGI:3826342 NCBI chr 6:32,369,561...32,380,822
Ensembl chr 6:32,373,816...32,380,817
JBrowse link
pronephric field specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pax2 paired box 2 involved_in
acts_upstream_of_or_within
ISS
ISO
GO_REF:0000024
(PMID:12435636)
UniProt
RGD
PMID:12435636 GO_REF:0000024 NCBI chr 1:243,616,509...243,697,454
Ensembl chr 1:243,616,606...243,695,321
JBrowse link
G Pax8 paired box 8 involved_in
acts_upstream_of_or_within
ISS
ISO
GO_REF:0000024
(PMID:12435636)
UniProt
RGD
PMID:12435636 GO_REF:0000024 NCBI chr 3:7,185,721...7,242,363
Ensembl chr 3:7,185,723...7,242,363
JBrowse link
proximal/distal pattern formation involved in metanephric nephron development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Irx1 iroquois homeobox 1 acts_upstream_of_or_within ISO (PMID:17875669) RGD PMID:17875669 NCBI chr 1:31,294,615...31,300,444
Ensembl chr 1:31,294,615...31,300,444
JBrowse link
G Irx2 iroquois homeobox 2 acts_upstream_of_or_within ISO (PMID:17875669) RGD PMID:17875669 NCBI chr 1:30,660,960...30,666,378
Ensembl chr 1:30,660,960...30,666,378
JBrowse link
proximal/distal pattern formation involved in nephron development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Irx3 iroquois homeobox 3 acts_upstream_of_or_within ISO (PMID:17875669) RGD PMID:17875669 NCBI chr19:15,211,882...15,215,323
Ensembl chr19:15,211,878...15,215,317
JBrowse link
specification of anterior mesonephric tubule identity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Osr1 odd-skipped related transcription factor 1 involved_in ISS
ISO
GO_REF:0000024
(MGI:3697513|PMID:16790474)
UniProt
RGD
PMID:16790474 GO_REF:0000024 MGI:3697513 NCBI chr 6:32,369,561...32,380,822
Ensembl chr 6:32,373,816...32,380,817
JBrowse link
specification of loop of Henle identity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hes5 hes family bHLH transcription factor 5 acts_upstream_of_or_within ISO (PMID:15821257) RGD PMID:15821257 NCBI chr 5:165,522,138...165,523,684
Ensembl chr 5:165,522,234...165,523,001
JBrowse link
G Irx1 iroquois homeobox 1 acts_upstream_of_or_within ISO (PMID:17875669) RGD PMID:17875669 NCBI chr 1:31,294,615...31,300,444
Ensembl chr 1:31,294,615...31,300,444
JBrowse link
G Irx2 iroquois homeobox 2 acts_upstream_of_or_within ISO (PMID:17875669) RGD PMID:17875669 NCBI chr 1:30,660,960...30,666,378
Ensembl chr 1:30,660,960...30,666,378
JBrowse link
G Irx3 iroquois homeobox 3 acts_upstream_of_or_within ISO (PMID:17875669) RGD PMID:17875669 NCBI chr19:15,211,882...15,215,323
Ensembl chr19:15,211,878...15,215,317
JBrowse link
specification of posterior mesonephric tubule identity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Osr1 odd-skipped related transcription factor 1 involved_in ISS
ISO
GO_REF:0000024
(MGI:3697513|PMID:16790474)
UniProt
RGD
PMID:16790474 GO_REF:0000024 MGI:3697513 NCBI chr 6:32,369,561...32,380,822
Ensembl chr 6:32,373,816...32,380,817
JBrowse link
specification of ureteric bud anterior/posterior symmetry by BMP signaling pathway term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp4 bone morphogenetic protein 4 involved_in ISS
ISO
IEA
GO_REF:0000024
(PMID:10706139), (PMID:17118062)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:10706139 PMID:17118062 GO_REF:0000024 GO_REF:0000107 NCBI chr15:19,618,538...19,633,494
Ensembl chr15:19,618,542...19,623,306
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19497
    multicellular organismal process 8976
      pattern specification process 496
        pattern specification involved in kidney development 9
          anterior/posterior pattern specification involved in kidney development + 2
          kidney field specification + 2
          pattern specification involved in mesonephros development + 2
          pattern specification involved in metanephros development + 4
          pattern specification involved in pronephros development + 2
          proximal/distal pattern formation involved in nephron development + 5
          renal capsule specification + 1
          specification of nephron tubule identity + 5
Path 2
Term Annotations click to browse term
  biological_process 19497
    developmental process 6889
      anatomical structure development 6306
        multicellular organism development 5727
          system development 5373
            urogenital system development 439
              renal system development 391
                renal system pattern specification 9
                  pattern specification involved in kidney development 9
                    anterior/posterior pattern specification involved in kidney development + 2
                    kidney field specification + 2
                    pattern specification involved in mesonephros development + 2
                    pattern specification involved in metanephros development + 4
                    pattern specification involved in pronephros development + 2
                    proximal/distal pattern formation involved in nephron development + 5
                    renal capsule specification + 1
                    specification of nephron tubule identity + 5
paths to the root