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ONTOLOGY REPORT - ANNOTATIONS

Term:regulation of dendritic spine morphogenesis
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Accession:GO:0061001 term browser browse the term
Definition:Any process that modulates the rate, frequency, or extent of dendritic spine morphogenesis, the process in which the anatomical structures of a dendritic spine are generated and organized. A dendritic spine is a protrusion from a dendrite and a specialized subcellular compartment involved in synaptic transmission.


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regulation of dendritic spine morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abi2 abl-interactor 2 involved_in ISO (MGI:3525751|PMID:15572692)
(PMID:15572692)		 RGD PMID:15572692 MGI:3525751 NCBI chr 9:61,827,186...61,905,703
Ensembl chr 9:61,827,139...61,905,699 		JBrowse link
G Abi3bp ABI family member 3 binding protein involved_in IMP PMID:22485184 ARUK-UCL PMID:22485184 RGD:42721990 NCBI chr11:43,912,187...44,128,888
Ensembl chr11:43,913,043...44,128,929 		JBrowse link
G Adam10 ADAM metallopeptidase domain 10 IMP RGD PMID:22328515 RGD:13703034 NCBI chr 8:71,346,008...71,477,889
Ensembl chr 8:71,345,837...71,477,889 		JBrowse link
G Arc activity-regulated cytoskeleton-associated protein involved_in IGI PMID:15537891 ARUK-UCL PMID:15537891 RGD:13210528 NCBI chr 7:106,555,968...106,559,697
Ensembl chr 7:106,555,785...106,559,378 		JBrowse link
G Arhgap33 Rho GTPase activating protein 33 IMP RGD PMID:24003235 RGD:13508596 NCBI chr 1:85,776,112...85,789,767
Ensembl chr 1:85,776,108...85,789,678 		JBrowse link
G Arhgap44 Rho GTPase activating protein 44 involved_in ISO
IBA		 (MGI:5582709|PMID:24352656)
(PMID:24352656)
GO_REF:0000033		 RGD
GO_Central		 PMID:24352656 GO_REF:0000033 MGI:5582709 NCBI chr10:49,655,583...49,822,876
Ensembl chr10:49,655,584...49,824,297 		JBrowse link
G Cdk5 cyclin-dependent kinase 5 involved_in ISS
ISO
IEA		 GO_REF:0000024
(PMID:17143272)
GO_REF:0000107
(MGI:3696283|PMID:17143272)		 UniProt
RGD
Ensembl		 PMID:17143272 GO_REF:0000024 GO_REF:0000107 MGI:3696283 NCBI chr 4:10,754,682...10,760,110
Ensembl chr 4:10,754,687...10,760,112 		JBrowse link
G Cdk5r1 cyclin-dependent kinase 5 regulatory subunit 1 involved_in ISS
ISO		 GO_REF:0000024
(PMID:17143272)
(MGI:3696283|PMID:17143272)		 UniProt
RGD		 PMID:17143272 GO_REF:0000024 MGI:3696283 NCBI chr10:65,484,266...65,485,467
Ensembl chr10:65,483,941...65,488,456 		JBrowse link
G Cfl1 cofilin 1 involved_in ISO
ISS		 (PMID:24464040)
GO_REF:0000024		 RGD
ParkinsonsUK-UCL		 PMID:24464040 GO_REF:0000024 NCBI chr 1:202,796,012...202,801,337
Ensembl chr 1:202,786,627...202,817,587 		JBrowse link
G Dnm3 dynamin 3 IMP RGD PMID:15741233 RGD:8554738 NCBI chr13:74,359,043...74,838,135
Ensembl chr13:74,359,213...74,838,108 		JBrowse link
G Epha4 Eph receptor A4 involved_in ISS
ISO		 GO_REF:0000024
(PMID:17143272)
(MGI:3696283|PMID:17143272)		 UniProt
RGD		 PMID:17143272 GO_REF:0000024 MGI:3696283 NCBI chr 9:78,815,460...78,958,139
Ensembl chr 9:78,815,460...78,958,139 		JBrowse link
G Kif1a kinesin family member 1A involved_in IMP PMID:30021165 UniProt PMID:30021165 RGD:14995321 NCBI chr 9:93,563,033...93,647,412
Ensembl chr 9:93,563,045...93,647,480 		JBrowse link
G Lrrk2 leucine-rich repeat kinase 2 involved_in ISO
ISS		 (PMID:21168496)
UniProtKB:P23528 (PMID:24464040)
UniProtKB:P23528 (MGI:5553024|PMID:24464040)
GO_REF:0000024		 RGD
ParkinsonsUK-UCL		 PMID:21168496 PMID:24464040 GO_REF:0000024 MGI:5553024 NCBI chr 7:122,826,696...122,987,711
Ensembl chr 7:122,826,696...122,987,703 		JBrowse link
G Lzts3 leucine zipper tumor suppressor family member 3 involved_in IMP
IBA		 PMID:27252646
GO_REF:0000033		 GO_Central PMID:27252646 GO_REF:0000033, RGD:13210540 NCBI chr 3:117,850,286...117,861,132
Ensembl chr 3:117,851,702...117,860,081 		JBrowse link
G Nlgn3 neuroligin 3 involved_in ISS
ISO		 GO_REF:0000024
(PMID:21808020)
(MGI:5286761|PMID:21808020)		 BHF-UCL
RGD		 PMID:21808020 PMID:21808020 GO_REF:0000024 MGI:5286761, RGD:8553412 NCBI chr  X:66,427,926...66,457,378
Ensembl chr  X:66,429,458...66,451,876 		JBrowse link
G Pdlim5 PDZ and LIM domain 5 involved_in IDA PMID:19900557 UniProt PMID:19900557 RGD:8554803 NCBI chr 2:230,952,251...231,120,329
Ensembl chr 2:230,952,248...231,120,275 		JBrowse link
G Ppfia2 PTPRF interacting protein alpha 2 involved_in ISO (PMID:30021165) RGD PMID:30021165 NCBI chr 7:41,765,716...42,240,104
Ensembl chr 7:41,765,575...42,239,599 		JBrowse link
G Ppp1r9a protein phosphatase 1, regulatory subunit 9A IMP RGD PMID:15473970 RGD:10043779 NCBI chr 4:32,970,501...33,292,360
Ensembl chr 4:33,024,450...33,286,907 		JBrowse link
G Shank3 SH3 and multiple ankyrin repeat domains 3 involved_in IEA
ISO
ISS		 GO_REF:0000107
(PMID:21795692)
(MGI:5320264|PMID:21795692)		 Ensembl
RGD		 PMID:21795692 PMID:21795692 GO_REF:0000107 MGI:5320264, RGD:7349315 NCBI chr 7:120,568,707...120,630,796
Ensembl chr 7:120,570,402...120,630,374 		JBrowse link
G Sipa1l1 signal-induced proliferation-associated 1 like 1 involved_in IDA PMID:11502259 UniProt PMID:11502259 RGD:8554032 NCBI chr 6:101,839,351...102,118,408
Ensembl chr 6:101,839,404...102,116,950 		JBrowse link
G Srcin1 SRC kinase signaling inhibitor 1 involved_in ISO
IBA
IEA
ISS		 (PMID:19146815)
GO_REF:0000033
GO_REF:0000107
GO_REF:0000024		 RGD
GO_Central
Ensembl
UniProt		 PMID:19146815 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr10:82,502,911...82,569,882
Ensembl chr10:82,504,393...82,571,040 		JBrowse link
G Tanc2 tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 involved_in IMP
IBA		 PMID:30021165
GO_REF:0000033		 GO_Central PMID:30021165 GO_REF:0000033, RGD:14995321 NCBI chr10:90,553,124...90,873,477
Ensembl chr10:90,553,002...90,868,756 		JBrowse link
G Zdhhc15 zinc finger DHHC-type palmitoyltransferase 15 involved_in IMP PMID:31189538 UniProt PMID:31189538 RGD:25671406 NCBI chr  X:69,568,086...69,701,756
Ensembl chr  X:69,574,124...69,701,756 		JBrowse link
negative regulation of dendritic spine morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dnm3 dynamin 3 IDA RGD PMID:17880892 RGD:8553820 NCBI chr13:74,359,043...74,838,135
Ensembl chr13:74,359,213...74,838,108 		JBrowse link
G Dtnbp1 dystrobrevin binding protein 1 IMP
IDA		 RGD PMID:20531346 PMID:20531346 RGD:11251757, RGD:11251757 NCBI chr17:19,685,218...19,776,668
Ensembl chr17:19,685,215...19,776,661 		JBrowse link
G Efna1 ephrin A1 involved_in ISS
ISO		 GO_REF:0000024
(PMID:17143272)
(MGI:3696283|PMID:17143272)		 UniProt
RGD		 PMID:17143272 GO_REF:0000024 MGI:3696283 NCBI chr 2:174,681,676...174,689,061
Ensembl chr 2:174,681,682...174,690,866 		JBrowse link
G Ngef neuronal guanine nucleotide exchange factor involved_in ISS
ISO		 GO_REF:0000024
(MGI:3696283|PMID:17143272)		 UniProt
RGD		 PMID:17143272 GO_REF:0000024 MGI:3696283 NCBI chr 9:88,146,956...88,244,454
Ensembl chr 9:88,146,956...88,244,914 		JBrowse link
G Nlgn1 neuroligin 1 involved_in ISO
IEA
ISS		 UniProtKB:Q99K10 (PMID:23143522)
GO_REF:0000107
(MGI:5493186|PMID:23143522)
GO_REF:0000024		 RGD
Ensembl
BHF-UCL		 PMID:23143522 GO_REF:0000024 GO_REF:0000107 MGI:5493186 NCBI chr 2:108,256,236...109,181,530
Ensembl chr 2:108,257,824...109,002,464 		JBrowse link
G Nlgn3 neuroligin 3 involved_in ISO (MGI:5286761|PMID:21808020)
(PMID:21808020)		 RGD PMID:21808020 MGI:5286761 NCBI chr  X:66,427,926...66,457,378
Ensembl chr  X:66,429,458...66,451,876 		JBrowse link
G Pten phosphatase and tensin homolog involved_in ISO (MGI:3629385|PMID:16675393)
(PMID:16675393)		 RGD PMID:16675393 MGI:3629385 NCBI chr 1:230,630,443...230,697,070
Ensembl chr 1:230,630,338...230,696,838 		JBrowse link
G Ube3a ubiquitin protein ligase E3A IMP RGD PMID:25867122 RGD:11079590 NCBI chr 1:110,070,260...110,161,675
Ensembl chr 1:110,070,480...110,157,250 		JBrowse link
positive regulation of dendritic spine morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Actr2 actin related protein 2 IMP RGD PMID:23441206 RGD:11530033 NCBI chr14:94,296,443...94,333,735
Ensembl chr14:94,296,443...94,340,524 		JBrowse link
G Actr3 actin related protein 3 IMP RGD PMID:23441206 RGD:11530033 NCBI chr13:36,800,739...36,843,837
Ensembl chr13:36,800,093...36,844,124 		JBrowse link
G Afdn afadin, adherens junction formation factor IMP RGD PMID:22948147 RGD:13838731 NCBI chr 1:53,905,344...54,034,216
Ensembl chr 1:53,905,373...54,034,216 		JBrowse link
G Baiap2 BAR/IMD domain containing adaptor protein 2 IMP RGD PMID:15673667 RGD:9684988 NCBI chr10:105,223,065...105,290,130
Ensembl chr10:105,223,090...105,290,134 		JBrowse link
G Camk2b calcium/calmodulin-dependent protein kinase II beta involved_in IMP PMID:12873385 UniProt PMID:12873385 RGD:8553829 NCBI chr14:80,845,206...80,934,172
Ensembl chr14:80,845,238...80,933,994 		JBrowse link
G Caprin1 cell cycle associated protein 1 involved_in ISS
ISO
IEA		 GO_REF:0000024
(MGI:4888105|PMID:20516077)
GO_REF:0000107		 UniProt
RGD
Ensembl		 PMID:20516077 GO_REF:0000024 GO_REF:0000107 MGI:4888105 NCBI chr 3:90,152,305...90,230,447
Ensembl chr 3:90,153,620...90,230,502 		JBrowse link
G Caprin2 caprin family member 2 involved_in ISO (MGI:4888105|PMID:20516077) RGD PMID:20516077 MGI:4888105 NCBI chr 4:181,806,105...181,860,754
Ensembl chr 4:181,806,575...181,860,830 		JBrowse link
G Cask calcium/calmodulin dependent serine protein kinase IMP RGD PMID:18606847 RGD:11576294 NCBI chr  X:8,899,500...9,243,014
Ensembl chr  X:8,899,833...9,238,694 		JBrowse link
G Cux2 cut-like homeobox 2 involved_in ISO (MGI:4836115|PMID:20510857)
(PMID:20510857)		 RGD PMID:20510857 MGI:4836115 NCBI chr12:34,507,723...34,707,581
Ensembl chr12:34,520,959...34,705,806 		JBrowse link
G Dbn1 drebrin 1 involved_in IMP
IEA
ISS
ISO
IBA		 GO_REF:0000107
GO_REF:0000024
(MGI:5688247|PMID:25865831)
GO_REF:0000033
(PMID:25865831)		 Ensembl
UniProt
RGD
GO_Central		 PMID:25865831 PMID:19174472 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 MGI:5688247, RGD:10398809 NCBI chr17:9,150,608...9,164,982
Ensembl chr17:9,150,659...9,164,984 		JBrowse link
G Dbnl drebrin-like involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr14:80,666,115...80,681,155
Ensembl chr14:80,666,124...80,681,155 		JBrowse link
G Dhx36 DEAH-box helicase 36 involved_in IMP PMID:23651854 UniProt PMID:23651854 RGD:13792545 NCBI chr 2:146,856,469...146,894,577
Ensembl chr 2:146,856,469...146,894,572 		JBrowse link
G Dnm1l dynamin 1-like IMP RGD PMID:19605646 RGD:7800727 NCBI chr11:84,581,216...84,632,382
Ensembl chr11:84,581,216...84,631,482 		JBrowse link
G Eef2k eukaryotic elongation factor-2 kinase IMP RGD PMID:20427644 RGD:10401235 NCBI chr 1:175,393,119...175,456,756
Ensembl chr 1:175,393,154...175,455,164 		JBrowse link
G Ephb2 Eph receptor B2 IMP RGD PMID:21364901 RGD:127285794 NCBI chr 5:148,889,574...149,077,027
Ensembl chr 5:148,897,246...149,077,059 		JBrowse link
G Gprasp3 G protein-coupled receptor associated sorting protein family member 3 involved_in ISO (MGI:5545985|PMID:21199326)
(PMID:21199326)		 RGD PMID:21199326 MGI:5545985 NCBI chr  X:98,847,591...98,854,949
Ensembl chr  X:98,817,593...98,854,545 		JBrowse link
G Il1rapl1 interleukin 1 receptor accessory protein-like 1 involved_in ISO (PMID:21940441) BHF-UCL PMID:21940441 NCBI chr  X:51,371,969...52,876,726
Ensembl chr  X:51,378,215...52,876,772 		JBrowse link
G Itpka inositol-trisphosphate 3-kinase A acts_upstream_of_or_within IMP PMID:19890013 MGI PMID:19890013 RGD:8553536 NCBI chr 3:106,726,036...106,734,601
Ensembl chr 3:106,726,036...106,734,600 		JBrowse link
G Kalrn kalirin, RhoGEF kinase involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:4358076 (PMID:19625617)		 Ensembl
RGD		 PMID:19625617 GO_REF:0000107 NCBI chr11:66,198,155...66,803,166
Ensembl chr11:66,198,173...66,797,610 		JBrowse link
G Lrp8 LDL receptor related protein 8 involved_in ISO (MGI:5426130|PMID:21852430)
(PMID:21852430)		 RGD PMID:21852430 MGI:5426130 NCBI chr 5:122,563,468...122,635,434
Ensembl chr 5:122,563,453...122,631,352 		JBrowse link
G Marcks myristoylated alanine rich protein kinase C substrate IMP RGD PMID:16202710 RGD:9685333 NCBI chr20:40,685,315...40,691,012
Ensembl chr20:40,685,315...40,691,012 		JBrowse link
G Mfn1 mitofusin 1 IMP RGD PMID:19605646 RGD:7800727 NCBI chr 2:115,313,380...115,359,651
Ensembl chr 2:115,313,401...115,359,640 		JBrowse link
G Mfn2 mitofusin 2 IMP RGD PMID:19605646 RGD:7800727 NCBI chr 5:158,304,285...158,335,502
Ensembl chr 5:158,304,287...158,335,342 		JBrowse link
G Opa1 OPA1, mitochondrial dynamin like GTPase IMP RGD PMID:19605646 RGD:7800727 NCBI chr11:71,108,100...71,185,170
Ensembl chr11:71,109,873...71,185,109 		JBrowse link
G Pafah1b1 platelet-activating factor acetylhydrolase 1b, regulatory subunit 1 involved_in ISO (MGI:5619436|PMID:23483716)
(PMID:23483716)		 RGD PMID:23483716 MGI:5619436 NCBI chr10:59,533,042...59,591,808
Ensembl chr10:59,534,117...59,591,808 		JBrowse link
G Pak3 p21 (RAC1) activated kinase 3 IMP RGD PMID:18481281 RGD:7775053 NCBI chr  X:107,116,308...107,374,342
Ensembl chr  X:107,260,898...107,368,314 		JBrowse link
G Ptprd protein tyrosine phosphatase, receptor type, D involved_in IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr 5:90,046,993...90,698,977
NCBI chr 5:91,122,354...91,641,754
Ensembl chr 5:90,048,966...92,369,396 		JBrowse link
G Reln reelin involved_in IEA
ISO		 GO_REF:0000107
(MGI:5286805|PMID:21664258), (MGI:5426130|PMID:21852430)
(PMID:21664258), (PMID:21852430)		 Ensembl
RGD		 PMID:21664258 PMID:21852430 GO_REF:0000107 MGI:5286805 MGI:5426130 NCBI chr 4:12,736,177...13,162,956
Ensembl chr 4:12,736,130...13,162,211 		JBrowse link
G Slc30a1 solute carrier family 30 member 1 IMP RGD PMID:25319628 RGD:11057402 NCBI chr13:103,491,037...103,494,910
Ensembl chr13:103,491,037...103,494,910 		JBrowse link
G Stau2 staufen double-stranded RNA binding protein 2 IMP RGD PMID:16418534 RGD:10043163 NCBI chr 5:2,840,741...3,084,935
Ensembl chr 5:2,840,765...3,084,929 		JBrowse link
G Tiam1 TIAM Rac1 associated GEF 1 IMP RGD PMID:16474385 RGD:10043325 NCBI chr11:29,031,347...29,380,153
Ensembl chr11:29,031,348...29,159,901 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20134
    developmental process 7034
      anatomical structure morphogenesis 2975
        regulation of anatomical structure morphogenesis 998
          regulation of dendritic spine morphogenesis 60
            negative regulation of dendritic spine morphogenesis 8
            positive regulation of dendritic spine morphogenesis 31
Path 2
Term Annotations click to browse term
  biological_process 20134
    developmental process 7034
      anatomical structure development 6553
        multicellular organism development 5285
          system development 4565
            nervous system development 2825
              neurogenesis 2087
                generation of neurons 1798
                  neuron differentiation 1714
                    neuron development 1408
                      neuron projection development 1234
                        dendrite development 332
                          dendrite morphogenesis 198
                            dendritic spine morphogenesis 77
                              regulation of dendritic spine morphogenesis 60
                                negative regulation of dendritic spine morphogenesis 8
                                positive regulation of dendritic spine morphogenesis 31
paths to the root