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ONTOLOGY REPORT - ANNOTATIONS


Term:regulation of gene silencing by RNA
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Accession:GO:0060966 term browser browse the term
Definition:Any process that regulates the rate, frequency, or extent of gene silencing by RNA. Gene silencing by RNA is the process in which RNA molecules inactivate expression of target genes.


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negative regulation of miRNA maturation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Esr1 estrogen receptor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936489:4,616,839...4,887,179 JBrowse link
G Hnf1a HNF1 homeobox A ISO RGD PMID:23674172 RGD:150540303 NCBI chrNW_004936668:62,103...81,549 JBrowse link
G Ncor1 nuclear receptor corepressor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936821:382,756...538,254 JBrowse link
G Ncor2 nuclear receptor corepressor 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936558:658,723...775,263 JBrowse link
G Ppp3ca protein phosphatase 3 catalytic subunit alpha involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936520:1,987,989...2,146,473 JBrowse link
G Tgfb1 transforming growth factor beta 1 involved_in ISO (PMID:22269326) BHF-UCL PMID:22269326 NCBI chrNW_004936661:3,742,080...3,758,266 JBrowse link
G Tnf tumor necrosis factor acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:31124343), (PMID:31824476) ARUK-UCL
Ensembl
PMID:31124343 PMID:31824476 GO_REF:0000107 NCBI chrNW_004936727:1,936,066...1,937,766 JBrowse link
G Tp53 tumor protein p53 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5013521|PMID:21522133) MGI
Ensembl
PMID:21522133 GO_REF:0000107 MGI:5013521 NCBI chrNW_004936595:919,807...935,367 JBrowse link
G Zc3h10 zinc finger CCCH-type containing 10 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936646:528,455...534,267 JBrowse link
G Zc3h12a zinc finger CCCH-type containing 12A involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936474:19,714,145...19,722,512 JBrowse link
G Zmpste24 zinc metallopeptidase STE24 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5013521|PMID:21522133) MGI
Ensembl
PMID:21522133 GO_REF:0000107 MGI:5013521 NCBI chrNW_004936474:22,035,059...22,077,846 JBrowse link
negative regulation of miRNA-mediated gene silencing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dnd1 DND microRNA-mediated repression inhibitor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936531:9,607,678...9,610,245 JBrowse link
G Elavl1 ELAV like RNA binding protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936588:4,931,665...4,959,032 JBrowse link
G Pou5f1 POU class 5 homeobox 1 involved_in ISO (PMID:19409607) UniProt PMID:19409607 NCBI chrNW_004936837:827,568...838,933 JBrowse link
G Pparg peroxisome proliferator activated receptor gamma involved_in ISO (PMID:28522568) BHF-UCL PMID:28522568 NCBI chrNW_004936602:1,230,907...1,368,588 JBrowse link
G Tgfb1 transforming growth factor beta 1 involved_in ISS BHF-UCL GO_REF:0000024 NCBI chrNW_004936661:3,742,080...3,758,266 JBrowse link
negative regulation of post-transcriptional gene silencing by RNA term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adar adenosine deaminase RNA specific acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3573853|PMID:15556947) MGI
Ensembl
PMID:15556947 GO_REF:0000107 MGI:3573853 NCBI chrNW_004936580:4,183,016...4,208,341 JBrowse link
negative regulation of pre-miRNA processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bcdin3d BCDIN3 domain containing RNA methyltransferase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936512:7,516,324...7,521,063 JBrowse link
G Lin28b lin-28 homolog B involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936564:1,646,469...1,768,879 JBrowse link
negative regulation of primary miRNA processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Il6 interleukin 6 acts_upstream_of ISO (PMID:31507089) ARUK-UCL PMID:31507089 NCBI chrNW_004936549:7,015,595...7,016,246 JBrowse link
G Lin28b lin-28 homolog B involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936564:1,646,469...1,768,879 JBrowse link
G Mecp2 methyl-CpG binding protein 2 ISO RGD PMID:24636259 RGD:12789709 NCBI chrNW_004936809:902,938...967,771 JBrowse link
G Stat3 signal transducer and activator of transcription 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936490:17,119,189...17,178,402 JBrowse link
negative regulation of siRNA production term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tert telomerase reverse transcriptase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936815:468,987...492,666 JBrowse link
positive regulation of miRNA maturation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp4 bone morphogenetic protein 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936697:1,054,237...1,061,468 JBrowse link
G Ddx5 DEAD-box helicase 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936541:5,005,211...5,013,439 JBrowse link
G Egfr epidermal growth factor receptor involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936678:365,005...560,546 JBrowse link
G Il6 interleukin 6 acts_upstream_of_or_within ISO (PMID:27252421) ARUK-UCL PMID:27252421 NCBI chrNW_004936549:7,015,595...7,016,246 JBrowse link
G Lin28a lin-28 homolog A involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936474:10,896,153...10,909,247 JBrowse link
G Map2k1 mitogen-activated protein kinase kinase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936471:26,589,251...26,628,302 JBrowse link
G Map2k2 mitogen-activated protein kinase kinase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936588:2,338,127...2,377,090 JBrowse link
G Nr2f1 nuclear receptor subfamily 2 group F member 1 acts_upstream_of_or_within ISO (MGI:5574156|PMID:24349493) MGI PMID:24349493 MGI:5574156 NCBI chrNW_004936523:9,508,204...9,517,266 JBrowse link
G Ripk1 receptor interacting serine/threonine kinase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936534:9,326,307...9,361,943 JBrowse link
G Tgfb1 transforming growth factor beta 1 involved_in ISO (PMID:18548003) BHF-UCL PMID:18548003 NCBI chrNW_004936661:3,742,080...3,758,266 JBrowse link
G Tp53 tumor protein p53 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936595:919,807...935,367 JBrowse link
positive regulation of miRNA-mediated gene silencing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ajuba ajuba LIM protein involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936722:1,331,568...1,341,854 JBrowse link
G Dhx9 DExH-box helicase 9 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936481:6,896,487...6,934,938 JBrowse link
G Fmr1 Fragile X messenger ribonucleoprotein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936513:1,290,038...1,327,850 JBrowse link
G Fxr1 FMR1 autosomal homolog 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936566:2,354,301...2,425,140 JBrowse link
G Limd1 LIM domain containing 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936695:260,586...314,521 JBrowse link
G LOC101967491 WT1 interacting protein involved_in ISO (PMID:20616046) UniProt PMID:20616046 NCBI chrNW_004936570:1,469,181...1,494,574 JBrowse link
G Nfkb1 nuclear factor kappa B subunit 1 involved_in ISO PMID:24676391 BHF-UCL PMID:24676391 RGD:10400879 NCBI chrNW_004936520:733,760...850,563 JBrowse link
G Pum1 pumilio RNA binding family member 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936474:14,243,325...14,363,461 JBrowse link
G Pum2 pumilio RNA binding family member 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936493:11,067,318...11,154,133 JBrowse link
G Stat3 signal transducer and activator of transcription 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936490:17,119,189...17,178,402 JBrowse link
G Tial1 TIA1 cytotoxic granule associated RNA binding protein like 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936486:8,925,819...8,947,872 JBrowse link
G Trim71 tripartite motif containing 71 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:4438512|PMID:19898466) MGI
Ensembl
PMID:19898466 GO_REF:0000107 MGI:4438512 NCBI chrNW_004936473:23,223,984...23,290,177 JBrowse link
G Zfp36 ZFP36 ring finger protein involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936661:2,251,148...2,253,527 JBrowse link
positive regulation of post-transcriptional gene silencing by RNA term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Xpo5 exportin 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936476:16,434,629...16,481,044 JBrowse link
positive regulation of pre-miRNA processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Trub1 TruB pseudouridine synthase family member 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936486:5,135,379...5,166,858 JBrowse link
regulation of miRNA maturation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tarbp2 TARBP2 subunit of RISC loading complex involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:6094668|PMID:27159388) Ensembl
MGI
InterPro
PMID:27159388 GO_REF:0000002 GO_REF:0000107 MGI:6094668 NCBI chrNW_004936512:10,774,793...10,780,041 JBrowse link
regulation of miRNA-mediated gene silencing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fmr1 Fragile X messenger ribonucleoprotein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936513:1,290,038...1,327,850 JBrowse link
G Lin28a lin-28 homolog A acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:4438512|PMID:19898466) MGI
Ensembl
PMID:19898466 GO_REF:0000107 MGI:4438512 NCBI chrNW_004936474:10,896,153...10,909,247 JBrowse link
G Mael maelstrom spermatogenic transposon silencer involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004936481:18,903,153...18,928,195 JBrowse link
G Tnrc6c trinucleotide repeat containing adaptor 6C acts_upstream_of_or_within ISO (MGI:5315650|PMID:22187428) MGI PMID:22187428 MGI:5315650 NCBI chrNW_004936594:2,656,079...2,741,254 JBrowse link
G Trim71 tripartite motif containing 71 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:4438512|PMID:19898466) MGI
Ensembl
PMID:19898466 GO_REF:0000107 MGI:4438512 NCBI chrNW_004936473:23,223,984...23,290,177 JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 14973
    regulation of biological process 10142
      regulation of metabolic process 5612
        regulation of macromolecule metabolic process 5154
          regulation of gene expression 3948
            regulation of gene silencing by RNA 47
              negative regulation of gene silencing by RNA + 21
              regulation of post-transcriptional gene silencing by RNA + 45
              regulation of production of small RNA involved in gene silencing by RNA + 27
Path 2
Term Annotations click to browse term
  biological_process 14973
    biological regulation 10690
      regulation of biological process 10142
        regulation of metabolic process 5612
          negative regulation of metabolic process 2702
            negative regulation of macromolecule metabolic process 2480
              negative regulation of gene expression 952
                gene silencing by RNA 98
                  regulation of gene silencing by RNA 47
                    negative regulation of gene silencing by RNA + 21
                    regulation of post-transcriptional gene silencing by RNA + 45
                    regulation of production of small RNA involved in gene silencing by RNA + 27
paths to the root