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ONTOLOGY REPORT - ANNOTATIONS

Term:regulation of gene silencing by regulatory ncRNA
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Accession:GO:0060966 term browser browse the term
Definition:Any process that regulates the rate, frequency, or extent of gene silencing by RNA. Gene silencing by RNA is the process in which RNA molecules inactivate expression of target genes.
Synonyms:related_synonym: regulation of gene silencing by RNA


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negative regulation of miRNA processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hnf1a HNF1 homeobox A IMP RGD PMID:23674172 RGD:150540303 NCBI chr12:41,638,536...41,672,806
Ensembl chr12:41,645,587...41,672,104 		JBrowse link
G Tp53 tumor protein p53 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:1890508 (PMID:21522133)		 Ensembl
RGD		 PMID:21522133 GO_REF:0000107 NCBI chr10:54,300,070...54,311,525
Ensembl chr10:54,300,048...54,311,524 		JBrowse link
G Zc3h10 zinc finger CCCH type containing 10 involved_in ISO (PMID:28431233) RGD PMID:28431233 NCBI chr 7:973,415...977,742
Ensembl chr 7:972,855...979,349 		JBrowse link
G Zmpste24 zinc metallopeptidase STE24 acts_upstream_of_or_within ISO MGI:2180033|MGI:98834 (PMID:21522133) RGD PMID:21522133 NCBI chr 5:134,627,218...134,660,360
Ensembl chr 5:134,627,229...134,660,110 		JBrowse link
negative regulation of miRNA-mediated gene silencing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dnd1 DND microRNA-mediated repression inhibitor 1 involved_in ISO
IBA		 (PMID:18155131)
GO_REF:0000033		 RGD
GO_Central		 PMID:18155131 GO_REF:0000033 NCBI chr18:28,378,692...28,381,316
Ensembl chr18:28,378,692...28,381,316 		JBrowse link
G Elavl1 ELAV like RNA binding protein 1 involved_in ISS
ISO		 GO_REF:0000024
(PMID:26595526)		 UniProt
RGD		 PMID:26595526 GO_REF:0000024 NCBI chr12:2,640,936...2,684,787
Ensembl chr12:2,645,061...2,684,784 		JBrowse link
G ENSRNOG00000066668 involved_in IEA GO_REF:0000118 TreeGrafter GO_REF:0000118 Ensembl chr  X:31,590,108...31,590,900 JBrowse link
G Fmr1 fragile X messenger ribonucleoprotein 1 involved_in ISS
ISO		 GO_REF:0000024
(PMID:25464849)		 UniProt
RGD		 PMID:25464849 GO_REF:0000024 NCBI chr  X:147,240,239...147,278,057
Ensembl chr  X:147,240,301...147,278,050 		JBrowse link
negative regulation of post-transcriptional gene silencing by regulatory ncRNA term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adar adenosine deaminase, RNA-specific involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
(PMID:15556947)		 Ensembl
RGD		 PMID:15556947 GO_REF:0000107 NCBI chr 2:175,138,391...175,178,280
Ensembl chr 2:175,138,403...175,178,282 		JBrowse link
negative regulation of pre-miRNA processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bcdin3d BCDIN3 domain containing RNA methyltransferase involved_in ISO
IBA
ISS		 (PMID:23063121)
GO_REF:0000033
GO_REF:0000024		 RGD
GO_Central
UniProt		 PMID:23063121 GO_REF:0000024 GO_REF:0000033 NCBI chr 7:130,605,540...130,610,134
Ensembl chr 7:130,605,541...130,610,115 		JBrowse link
G Lin28a lin-28 homolog A involved_in ISO (PMID:21247876) RGD PMID:21247876 NCBI chr 5:146,227,119...146,244,122
Ensembl chr 5:146,227,119...146,244,122 		JBrowse link
G Lin28b lin-28 homolog B involved_in ISO (PMID:18951094) RGD PMID:18951094 NCBI chr20:48,865,329...48,964,769
Ensembl chr20:48,869,485...48,955,077 		JBrowse link
negative regulation of primary miRNA processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Il6 interleukin 6 acts_upstream_of ISO UniProtKB:P40763 (PMID:31507089) RGD PMID:31507089 NCBI chr 4:5,214,602...5,219,178
Ensembl chr 4:5,213,394...5,219,178 		JBrowse link
G Lin28b lin-28 homolog B involved_in ISO (PMID:18951094) RGD PMID:18951094 NCBI chr20:48,865,329...48,964,769
Ensembl chr20:48,869,485...48,955,077 		JBrowse link
G Mecp2 methyl CpG binding protein 2 IMP RGD PMID:24636259 RGD:12789709 NCBI chr  X:151,781,177...151,844,687
Ensembl chr  X:151,789,930...151,844,689 		JBrowse link
G Stat3 signal transducer and activator of transcription 3 involved_in ISO
IEA		 (PMID:31507089)
GO_REF:0000107		 RGD
Ensembl		 PMID:31507089 GO_REF:0000107 NCBI chr10:85,811,206...85,863,057
Ensembl chr10:85,811,218...85,863,057 		JBrowse link
positive regulation of miRNA processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ripk1 receptor interacting serine/threonine kinase 1 acts_upstream_of ISO (PMID:26020802) RGD PMID:26020802 NCBI chr17:30,839,639...30,871,824
Ensembl chr17:30,839,650...30,871,824 		JBrowse link
positive regulation of miRNA-mediated gene silencing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ajuba ajuba LIM protein involved_in IEA GO_REF:0000118 TreeGrafter GO_REF:0000118 NCBI chr15:28,019,775...28,031,537
Ensembl chr15:28,019,778...28,030,021 		JBrowse link
G Fmr1 fragile X messenger ribonucleoprotein 1 involved_in ISO
ISS		 (PMID:17057366)
GO_REF:0000024		 RGD
UniProt		 PMID:17057366 GO_REF:0000024 NCBI chr  X:147,240,239...147,278,057
Ensembl chr  X:147,240,301...147,278,050 		JBrowse link
G Fxr1 FMR1 autosomal homolog 1 involved_in ISS
ISO
IEA		 GO_REF:0000024
(PMID:17057366)
GO_REF:0000107		 UniProt
RGD
Ensembl		 PMID:17057366 GO_REF:0000024 GO_REF:0000107 NCBI chr 2:116,884,167...116,937,590
Ensembl chr 2:116,884,248...116,937,590 		JBrowse link
G Limd1 LIM domain containing 1 involved_in IEA GO_REF:0000118 TreeGrafter GO_REF:0000118 NCBI chr 8:123,121,363...123,168,476
Ensembl chr 8:123,122,460...123,167,714 		JBrowse link
G Pum1 pumilio RNA-binding family member 1 involved_in ISO (PMID:20818387), (PMID:22345517) RGD PMID:20818387 PMID:22345517 NCBI chr 5:142,836,933...142,954,331
Ensembl chr 5:142,837,127...142,954,039 		JBrowse link
G Pum2 pumilio RNA-binding family member 2 involved_in ISO (PMID:22345517) RGD PMID:22345517 NCBI chr 6:31,462,879...31,542,976
Ensembl chr 6:31,462,872...31,542,976 		JBrowse link
G Tial1 Tia1 cytotoxic granule-associated RNA binding protein-like 1 involved_in ISO FB:FBgn0005649 (PMID:33203680) RGD PMID:33203680 NCBI chr 1:183,008,358...183,045,092
Ensembl chr 1:183,009,253...183,031,637 		JBrowse link
G Trim71 tripartite motif containing 71 acts_upstream_of_or_within ISO (PMID:19898466) RGD PMID:19898466 NCBI chr 8:114,193,439...114,250,807
Ensembl chr 8:114,199,187...114,250,807 		JBrowse link
G Wtip WT1 interacting protein involved_in IEA GO_REF:0000118 TreeGrafter GO_REF:0000118 NCBI chr 1:86,731,214...86,764,939
Ensembl chr 1:86,731,265...86,765,014 		JBrowse link
G Zfp36 zinc finger protein 36 involved_in ISS
ISO		 GO_REF:0000024
(PMID:15766526)		 UniProt
RGD		 PMID:15766526 GO_REF:0000024 NCBI chr 1:83,669,084...83,671,564
Ensembl chr 1:83,669,084...83,671,564 		JBrowse link
positive regulation of post-transcriptional gene silencing by RNA term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ago2 argonaute RISC catalytic component 2 IMP RGD PMID:15147961 RGD:401900682 NCBI chr 7:105,018,202...105,105,118
Ensembl chr 7:105,029,120...105,104,974 		JBrowse link
positive regulation of pre-miRNA processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dgcr8 DGCR8 microprocessor complex subunit involved_in ISO (PMID:15574589), (PMID:32926445) RGD PMID:15574589 PMID:32926445 NCBI chr11:82,704,673...82,737,251
Ensembl chr11:82,704,729...82,737,242 		JBrowse link
G Trub1 TruB pseudouridine synthase family member 1 involved_in ISS
ISO		 GO_REF:0000024
(PMID:32926445)		 UniProt
RGD		 PMID:32926445 GO_REF:0000024 NCBI chr 1:256,513,418...256,554,549
Ensembl chr 1:256,515,562...256,552,814 		JBrowse link
positive regulation of primary miRNA processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp4 bone morphogenetic protein 4 involved_in ISO
IEA		 (PMID:18548003)
GO_REF:0000107		 RGD
Ensembl		 PMID:18548003 GO_REF:0000107 NCBI chr15:19,618,538...19,633,494
Ensembl chr15:19,618,542...19,623,306 		JBrowse link
G Linc00176 long intergenic non-protein coding RNA 176 involved_in IEA GO_REF:0000118 TreeGrafter GO_REF:0000118 NCBI chr 3:168,771,350...168,775,133
Ensembl chr 3:168,704,299...168,774,991 		JBrowse link
G Prpf6 pre-mRNA processing factor 6 involved_in IEA GO_REF:0000118 TreeGrafter GO_REF:0000118 NCBI chr 3:168,706,952...168,771,191
Ensembl chr 3:168,704,299...168,774,991 		JBrowse link
G Tgfb1 transforming growth factor, beta 1 involved_in ISO (PMID:18548003) RGD PMID:18548003 NCBI chr 1:81,196,532...81,212,848
Ensembl chr 1:81,196,532...81,212,847 		JBrowse link
regulation of miRNA processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tarbp2 Tarbp2 subunit of RISC loading complex involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000002
MGI:2135565|MGI:5645258 (PMID:27159388)		 InterPro
RGD		 PMID:27159388 GO_REF:0000002 NCBI chr 7:133,649,118...133,654,306
Ensembl chr 7:133,649,090...133,654,314 		JBrowse link
regulation of miRNA-mediated gene silencing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lin28a lin-28 homolog A acts_upstream_of_or_within ISO MGI:2685973 (PMID:19898466) RGD PMID:19898466 NCBI chr 5:146,227,119...146,244,122
Ensembl chr 5:146,227,119...146,244,122 		JBrowse link
G Mael maelstrom spermatogenic transposon silencer involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr13:78,457,073...78,496,657
Ensembl chr13:78,457,073...78,496,657 		JBrowse link
G Mir154 microRNA 154 acts_upstream_of_or_within ISO (PMID:25959411) RGD PMID:25959411 NCBI chr 6:128,752,947...128,753,030
Ensembl chr 6:128,752,947...128,753,030 		JBrowse link
G Tnrc6c trinucleotide repeat containing adaptor 6C acts_upstream_of_or_within ISO MGI:4124681 (PMID:22187428) RGD PMID:22187428 NCBI chr10:102,908,958...102,979,543
Ensembl chr10:102,868,828...102,978,194 		JBrowse link
G Trim71 tripartite motif containing 71 acts_upstream_of_or_within ISO MGI:1890546 (PMID:19898466) RGD PMID:19898466 NCBI chr 8:114,193,439...114,250,807
Ensembl chr 8:114,199,187...114,250,807 		JBrowse link
regulation of regulatory ncRNA processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Prkra protein activator of interferon induced protein kinase EIF2AK2 involved_in IEA
IBA		 GO_REF:0000118
GO_REF:0000033		 TreeGrafter
GO_Central		 GO_REF:0000033 GO_REF:0000118 NCBI chr 3:61,575,447...61,594,393
Ensembl chr 3:61,575,447...61,594,347 		JBrowse link
G Tarbp2 Tarbp2 subunit of RISC loading complex involved_in IEA
IBA		 GO_REF:0000118
GO_REF:0000033		 TreeGrafter
GO_Central		 GO_REF:0000033 GO_REF:0000118 NCBI chr 7:133,649,118...133,654,306
Ensembl chr 7:133,649,090...133,654,314 		JBrowse link
regulation of siRNA processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tarbp2 Tarbp2 subunit of RISC loading complex involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 7:133,649,118...133,654,306
Ensembl chr 7:133,649,090...133,654,314 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20413
    metabolic process 11835
      regulation of metabolic process 6641
        regulation of macromolecule metabolic process 6086
          regulation of macromolecule biosynthetic process 5286
            regulation of gene expression 5170
              regulation of gene silencing by regulatory ncRNA 37
                negative regulation of gene silencing by regulatory ncRNA + 15
                regulation of post-transcriptional gene silencing by regulatory ncRNA + 35
                regulation of regulatory ncRNA processing + 19
                regulation of regulatory ncRNA-mediated heterochromatin formation + 0
Path 2
Term Annotations click to browse term
  biological_process 20413
    biological regulation 13755
      regulation of biological process 13322
        regulation of metabolic process 6641
          regulation of biosynthetic process 5478
            regulation of cellular biosynthetic process 5386
              regulation of macromolecule biosynthetic process 5286
                regulation of gene expression 5170
                  negative regulation of gene expression 1382
                    regulatory ncRNA-mediated gene silencing 331
                      regulation of gene silencing by regulatory ncRNA 37
                        negative regulation of gene silencing by regulatory ncRNA + 15
                        regulation of post-transcriptional gene silencing by regulatory ncRNA + 35
                        regulation of regulatory ncRNA processing + 19
                        regulation of regulatory ncRNA-mediated heterochromatin formation + 0
paths to the root